BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031600
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 81 LQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAENIA 139
L+ V+ +A QL +D + + P++ F DL ADSLD+VE++MA EE+FGVS+ +E A IA
Sbjct: 9 LERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIA 68
Query: 140 TVQDAADLIEKVKA 153
TVQDA IEK K+
Sbjct: 69 TVQDALSYIEKAKS 82
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 76 AQPETLQTVQSTIAKQLSIDLSAV-TPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEG 134
A+ ET+ V + ++L++ V T D++F+ LGADSLDTVEI+M LEE+FG++V E+
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDK 60
Query: 135 AENIATVQDAADLIE 149
A++I+T+Q AAD+IE
Sbjct: 61 AQDISTIQQAADVIE 75
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 76 AQPETLQTVQSTIAKQLSIDLSAV-TPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEG 134
A+ ET+ V + ++L++ V T D++F+ LGAD LDTVEI+M LEE+FG++V E+
Sbjct: 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVEIVMNLEEEFGINVDEDK 60
Query: 135 AENIATVQDAADLIE 149
A++I+T+Q AAD+IE
Sbjct: 61 AQDISTIQQAADVIE 75
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 80 TLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENI 138
T ++ I+KQLS++ + ++ F DLGADSLD VE++MALEE+F V++ ++ A I
Sbjct: 6 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKI 65
Query: 139 ATVQDAADLIEK 150
TVQDA D IEK
Sbjct: 66 NTVQDAIDYIEK 77
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 80 TLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENI 138
T ++ I+KQLS++ + ++ F DLGADSLD VE++MALEE+F V++ ++ A I
Sbjct: 4 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKI 63
Query: 139 ATVQDAADLIEK 150
TVQDA D IEK
Sbjct: 64 NTVQDAIDYIEK 75
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ IA+QL ++ +TP+ KF DLGADSLD VE++MA EE+FG+ + +E AE I T
Sbjct: 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQT 63
Query: 141 VQDAAD-LIEKV 151
V D + L EKV
Sbjct: 64 VGDVINYLKEKV 75
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 77 QPETLQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGA 135
+ E + V++ IA +L ++ VT + +F DLGADSLDTVE++M LE++FG+ + +E A
Sbjct: 3 EQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62
Query: 136 ENIATVQDAADLI 148
E I TV+DA + I
Sbjct: 63 EKIRTVKDAVEYI 75
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 76 AQPETLQTVQSTIAKQLSIDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGEEG 134
+ +T + V+ + + L +D VT F D LGADSLDTVE++MA EE+FGV + ++
Sbjct: 1 SMSDTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDA 60
Query: 135 AENIATVQDAADLIEKVKA 153
AE I TV DA I+K A
Sbjct: 61 AETILTVGDAVKFIDKASA 79
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL + VT + F DLGADSLDTVE++MALEE+F + +E AE I T
Sbjct: 5 ERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 141 VQDAADLI 148
VQ A D I
Sbjct: 65 VQAAIDYI 72
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL + VT + F DLGADSLDTVE++MALEE+F + +E AE I T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 65
Query: 141 VQDAADLI 148
VQ A D I
Sbjct: 66 VQAAIDYI 73
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL + VT + F DLGADSLDTVE++MALEE+F + +E AE I T
Sbjct: 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 84
Query: 141 VQDAADLI 148
VQ A D I
Sbjct: 85 VQAAIDYI 92
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL + VT + F DLGADSLDTVE++MALEE+F + +E AE I T
Sbjct: 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 141 VQDAADLI 148
VQ A D I
Sbjct: 65 VQAAIDYI 72
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL +D + V + F D LGADSLDTVE++MALEE+F + +E AE I T
Sbjct: 9 ERVKKIIVEQLGVDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 68
Query: 141 VQDAADLI 148
VQ A D +
Sbjct: 69 VQAAIDYV 76
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
+ V+ I +QL + VT + F DLGADSLDTVE++MALEE+F + +E AE + T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65
Query: 141 VQDAADLI 148
VQ A D I
Sbjct: 66 VQAAIDYI 73
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGEEGAEN 137
E V+ I +L +D VT D F D LGADSLD E++M LE++FG + +E AE
Sbjct: 26 ENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEK 85
Query: 138 IATVQDAADLI 148
I TV DA I
Sbjct: 86 INTVGDAVKFI 96
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAEN 137
+TL+ V I +L +D + V + F DLGADSLD VE++M LE++F + + +E AE
Sbjct: 4 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEK 63
Query: 138 IATVQDAADLIE 149
IATV DA + I+
Sbjct: 64 IATVGDAVNYIQ 75
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAEN 137
+TL+ V I +L +D + V + F DLGADSLD VE++M LE++F + + +E AE
Sbjct: 2 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEK 61
Query: 138 IATVQDAADLIE 149
IATV DA + I+
Sbjct: 62 IATVGDAVNYIQ 73
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAEN 137
+TL+ V I +L +D + V + F DLGAD LD VE++M LE++F + + +E AE
Sbjct: 7 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEK 66
Query: 138 IATVQDAADLIEK 150
IATV DA + I+
Sbjct: 67 IATVGDAVNYIQN 79
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
Q V +A++L+ D + +T D++F DL ADSLDTVE+MMA+E ++G+ + ++ A I T
Sbjct: 9 QKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKT 68
Query: 141 VQDA 144
V D
Sbjct: 69 VSDV 72
>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia
Burgdorferi
Length = 84
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGE 132
S E V+S I++QL +T D++F DL ADSLD E++ LEE F + E
Sbjct: 4 SMDNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPE 63
Query: 133 EGAENIATVQDAADLIEKVKA 153
A TV D + I+K K
Sbjct: 64 NEANEFETVGDVVNFIKKRKG 84
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 74 SAAQPETLQTVQSTIAKQLS----IDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGV 128
S P TL+ +Q + L ID ++ ++ F DLG DSLD VEI+MA+E++FG
Sbjct: 6 SGMPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGF 65
Query: 129 SVGEEGAENIATVQDAADLI 148
+ + AE + Q+ D I
Sbjct: 66 EIPDIDAEKLMCPQEIVDYI 85
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 99 VTPDTKFADLGA------DSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLI--EK 150
VTP +K +L D LDTVE ++ +EE F V+V +E A+N T+Q+ AD + E+
Sbjct: 38 VTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSER 97
Query: 151 VKAA 154
KA
Sbjct: 98 AKAG 101
>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein From
Anaplasma Phagocytophilum. Seattle Structural Genomics
Center For Infectious Disease Target Anpha.01018.A
Length = 88
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 107 DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQD 143
D DSLD V+++M+LEE+F + + +E A+ + TV D
Sbjct: 40 DFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDD 76
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
Length = 92
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 89 AKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLI 148
++ S+ L +T DT+ LG DSL +++ LE+ +G+ + A+ + + + D++
Sbjct: 22 GERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVV 81
Query: 149 EKVKA 153
E V+
Sbjct: 82 EAVRG 86
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 94 IDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152
I+ S +TP+ F D L DSL VEI + E+++GV + +E + TV D I+K++
Sbjct: 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLE 81
>pdb|2KR5|A Chain A, Solution Structure Of An Acyl Carrier Protein Domain From
Fu I Polyketide Synthase
Length = 89
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEE 133
E L V ++++ I L +T D+ FAD+G DSL ++ I E G+ +G E
Sbjct: 11 EKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPE 65
>pdb|1VKU|A Chain A, Crystal Structure Of Acyl Carrier Protein (Tm0175) From
Thermotoga Maritima At 2.00 A Resolution
Length = 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 95 DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLI 148
DL V + F +LG DS+D ++++ E++F + + +E I V+D D++
Sbjct: 33 DLETVDEENTFKELGFDSIDVIDLVXFFEDEFALRIEDEEISKIRKVKDLIDIV 86
>pdb|1AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, Minimized Average
Structure
Length = 86
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 95 DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154
DLS D +F D+G DSL +E LE ++GVS+ ++ A + T ++ DLI A
Sbjct: 25 DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAE 84
Query: 155 SA 156
+A
Sbjct: 85 AA 86
>pdb|2K0X|A Chain A, The Actinorhodin Holo Acyl Carrier Protein From S.
Coelicolor
pdb|2K0Y|A Chain A, The Actinorhodin Apo Acyl Carrier Protein From S.
Coelicolor
pdb|2KG6|A Chain A, Solution Structure Of The Acetyl Actinorhodin Acyl Carrier
Protein From Streptomyces Coelicolor
pdb|2KG8|A Chain A, Nmr Solution Structures Of Malonyl Acp From The
Actinorhodin Polyketide Synthase In Streptomyces
Coelicolor
pdb|2KG9|A Chain A, Nmr Solution Structures Of Butyryl-Acp (A Non-Polar, Non
Pathway Intermediate) From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGA|A Chain A, Nmr Solution Structures Of Hexanoyl Acp (A Non Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGC|A Chain A, Nmr Solution Structures Of Octanoyl Acp (A Non-Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGD|A Chain A, Nmr Solution Structures Of 3-Oxo-Butyl-Acp, An
Intermediate Mimic From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGE|A Chain A, Nmr Solution Structures Of 3,5-Dioxohexyl Acp (A Triketide
Mimic) From The Actinorhodin Polyketide Synthase In
Streptomyces Coelicolor
Length = 86
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 95 DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154
DLS D +F D+G DSL +E LE ++GVS+ ++ A + T ++ DLI A
Sbjct: 25 DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAE 84
Query: 155 SA 156
+A
Sbjct: 85 AA 86
>pdb|2CNR|A Chain A, Structural Studies On The Interaction Of Scfas Acp With
Acps
Length = 82
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGE 132
+A Q E + + + + I + V D F D L DSL VE+++A EE+F V + +
Sbjct: 2 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPD 61
Query: 133 EGAENIATVQDAADLI 148
+ +N+ TV DA I
Sbjct: 62 DDVKNLKTVGDATKYI 77
>pdb|2KOO|A Chain A, Nmr Solution Structures Of Hexanoyl-Acp From The
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOP|A Chain A, Nmr Solution Structures Of 3-Oxooctanyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOQ|A Chain A, Nmr Solution Structures Of 3-Hydroxyoctanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOR|A Chain A, Nmr Solution Structures Of 2-Octenoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOS|A Chain A, Nmr Solution Structures Of Octanoyl-Acp From Streptomyces
Coelicolor Fatty Acid Synthase
Length = 81
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFAD-LGADSLDTVEIMMALEEQFGVSVGE 132
+A Q E + + + + I + V D F D L DSL VE+++A EE+F V + +
Sbjct: 1 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPD 60
Query: 133 EGAENIATVQDAADLI 148
+ +N+ TV DA I
Sbjct: 61 DDVKNLKTVGDATKYI 76
>pdb|2CGQ|A Chain A, A Putative Acyl Carrier Protein(Rv0033) From Mycobacterium
Tuberculosis
Length = 113
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 82 QTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATV 141
+ + +TI + L D DLG DSL +++ LE++F +++ A+NI TV
Sbjct: 29 EAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTV 88
Query: 142 QDA 144
D
Sbjct: 89 GDV 91
>pdb|3LMO|A Chain A, Crystal Structure Of Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2KW2|A Chain A, Solution Nmr Of The Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2LL8|A Chain A, Solution Nmr Structure Of The Specialized Holo-Acyl
Carrier Protein Rpa2022 From Rhodopseudomonas Palustris
Refined With Nh Rdcs, Northeast Structural Genomics
Consortium Target Rpr324
pdb|2LPK|A Chain A, Solution Nmr Of The Specialized Apo-Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
Length = 101
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 80 TLQTVQSTIAKQLSIDLSAVTPDTK-FADLGADSLDTVEIMMALEEQFGVSV 130
T V + IA+ I +TP++ DLG DSLD ++I A+++ FG+ +
Sbjct: 4 TFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKL 55
>pdb|2LTE|A Chain A, Solution Nmr Structure Of The Specialized Acyl Carrier
Protein Pa3334 (Apo) From Pseudomonas Aeruginosa,
Northeast Structural Genomics Consortium Target Pat415
Length = 103
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 80 TLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIA 139
T+ +V S + K+ ++ D++ DL DSL E+ + L ++FGV+ ++ + +
Sbjct: 33 TVLSVASGVPKE------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLE 86
Query: 140 TVQDAADLIEKVKAASA 156
TV + L+EK +AA +
Sbjct: 87 TVDELFQLVEKHRAAGS 103
>pdb|2CG5|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 91
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 88 IAKQLSI-DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGV 128
+A L I DL+AV D+ ADLG D+L +VE+ LE + +
Sbjct: 15 VAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNL 56
>pdb|1NQ4|A Chain A, Solution Structure Of Oxytetracycline Acyl Carrier Protein
Length = 95
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 89 AKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIAT 140
++ SIDL D F LG DSL + + +E +GV +G++ E T
Sbjct: 18 GEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATT 69
>pdb|2L22|A Chain A, Mupirocin Didomain Acp
Length = 212
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 74 SAAQPETLQ-TVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGE 132
++AQ E++Q ++ ++ + L +D + +F DLG DS+ + M + F + +
Sbjct: 124 ASAQRESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAA 183
Query: 133 EGAENIATVQDAADLIEK 150
+ T++ AD +++
Sbjct: 184 DAIYTWPTLKSLADEVDR 201
>pdb|1OR5|A Chain A, Solution Structure Of The Holo-Form Of The Frenolicin Acyl
Carrier Protein, Minimized Mean Structure
Length = 83
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 93 SIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAAD 146
S+DL+ DT F DLG DSL +E L++++G+++ +E + T ++ D
Sbjct: 22 SVDLAGEL-DTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLD 74
>pdb|2PNG|A Chain A, Type I Rat Fatty Acid Synthase Acyl Carrier Protein (Acp)
Domain
Length = 89
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 88 IAKQLSI-DLSAVTPDTKFADLGADSLDTVEIMMALEEQF 126
+A L I DL+ + D+ ADLG DSL VE+ LE +
Sbjct: 13 VAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREH 52
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 95 DLSAVTPDTKFADLGADSLDTVEIMMALEEQ 125
D++++ PD+ DLG DSL VE+ LE +
Sbjct: 2140 DVASINPDSTLVDLGLDSLMGVEVRQILERE 2170
>pdb|2LIU|A Chain A, Nmr Structure Of Holo-Acpi Domain From Cura Module From
Lyngbya Majuscula
pdb|2LIW|A Chain A, Nmr Structure Of Hmg-Acpi Domain From Cura Module From
Lyngbya Majuscula
Length = 99
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 79 ETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSV 130
E Q ++ +A+ L + S + D KF DLG DS+ VE + + + +++
Sbjct: 21 EIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNL 72
>pdb|1RQT|A Chain A, Nmr Structure Of Dimeric N-Terminal Domain Of Ribosomal
Protein L7 From E.Coli
pdb|1RQT|B Chain B, Nmr Structure Of Dimeric N-Terminal Domain Of Ribosomal
Protein L7 From E.Coli
Length = 37
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 113 LDTVEIMMALEEQFGVS 129
+D VE++ A+EE+FGVS
Sbjct: 17 MDVVELISAMEEKFGVS 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,265,276
Number of Sequences: 62578
Number of extensions: 94772
Number of successful extensions: 294
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 53
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)