Query 031600
Match_columns 156
No_of_seqs 165 out of 1141
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.7 3.8E-18 8.3E-23 125.4 4.9 80 75-154 49-129 (131)
2 PRK07117 acyl carrier protein; 99.7 1.3E-17 2.8E-22 113.8 6.9 76 77-152 3-79 (79)
3 PRK05883 acyl carrier protein; 99.7 4.9E-17 1.1E-21 113.6 8.7 80 75-154 10-90 (91)
4 PRK08172 putative acyl carrier 99.7 3.1E-17 6.6E-22 112.6 7.1 78 78-155 3-81 (82)
5 PRK05828 acyl carrier protein; 99.7 6.8E-17 1.5E-21 111.4 8.0 80 76-155 2-82 (84)
6 PRK05350 acyl carrier protein; 99.7 4.7E-17 1E-21 111.2 7.2 79 76-154 3-82 (82)
7 CHL00124 acpP acyl carrier pro 99.7 1.5E-16 3.2E-21 108.4 7.2 78 77-154 3-81 (82)
8 PRK12449 acyl carrier protein; 99.7 2.3E-16 4.9E-21 107.0 7.9 76 77-152 3-79 (80)
9 TIGR00517 acyl_carrier acyl ca 99.6 4.2E-16 9.1E-21 104.9 6.7 74 78-151 2-76 (77)
10 PRK07639 acyl carrier protein; 99.6 1.3E-15 2.8E-20 105.4 8.6 79 76-154 2-84 (86)
11 PTZ00171 acyl carrier protein; 99.6 8.5E-16 1.8E-20 116.2 8.2 82 74-155 65-147 (148)
12 PRK00982 acpP acyl carrier pro 99.6 1.3E-15 2.8E-20 102.6 6.7 75 78-152 2-77 (78)
13 COG0236 AcpP Acyl carrier prot 99.6 2.7E-15 5.8E-20 102.1 6.6 76 77-152 3-79 (80)
14 PF00550 PP-binding: Phosphopa 99.6 8.2E-15 1.8E-19 95.2 7.5 67 82-148 1-67 (67)
15 PRK09184 acyl carrier protein; 99.6 7.8E-15 1.7E-19 102.2 7.8 77 77-153 4-88 (89)
16 PRK06508 acyl carrier protein; 99.5 1.2E-14 2.7E-19 102.0 6.1 78 78-155 2-91 (93)
17 PRK07081 acyl carrier protein; 99.5 1.9E-14 4.2E-19 98.8 6.6 75 81-155 2-80 (83)
18 PRK05087 D-alanine--poly(phosp 99.4 8E-13 1.7E-17 89.9 7.1 73 79-151 2-77 (78)
19 TIGR01688 dltC D-alanine--poly 99.2 2.3E-11 5E-16 81.8 4.7 68 82-149 2-72 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.0 2.7E-09 5.9E-14 73.6 6.9 77 76-153 7-89 (96)
21 smart00823 PKS_PP Phosphopante 98.9 1.2E-08 2.7E-13 66.7 8.1 74 78-151 11-85 (86)
22 PRK06060 acyl-CoA synthetase; 98.7 6.4E-08 1.4E-12 87.7 8.1 75 79-153 545-620 (705)
23 TIGR02813 omega_3_PfaA polyket 98.7 3.7E-08 8.1E-13 100.2 7.1 79 75-153 1303-1384(2582)
24 TIGR03443 alpha_am_amid L-amin 98.5 2.6E-07 5.7E-12 89.3 8.0 77 76-152 845-921 (1389)
25 PRK10252 entF enterobactin syn 98.5 4.1E-07 8.8E-12 87.1 7.7 75 75-151 974-1048(1296)
26 PRK12467 peptide synthase; Pro 98.4 6.9E-07 1.5E-11 94.2 7.8 76 73-150 3599-3674(3956)
27 PRK05691 peptide synthase; Val 98.4 8.5E-07 1.9E-11 94.0 8.1 76 74-151 4236-4311(4334)
28 COG3433 Aryl carrier domain [S 98.3 1.2E-06 2.6E-11 58.4 4.9 71 84-155 3-73 (74)
29 PRK12467 peptide synthase; Pro 98.3 2.1E-06 4.5E-11 90.7 7.7 76 74-151 1025-1100(3956)
30 PRK12316 peptide synthase; Pro 98.2 2.4E-06 5.2E-11 91.8 7.8 76 74-151 5067-5142(5163)
31 PRK05691 peptide synthase; Val 98.2 3E-06 6.6E-11 89.9 8.1 76 74-151 1633-1708(4334)
32 PRK12316 peptide synthase; Pro 98.1 6.2E-06 1.3E-10 88.7 7.4 76 74-151 2511-2586(5163)
33 TIGR02813 omega_3_PfaA polyket 98.0 8.1E-06 1.8E-10 83.7 5.7 78 75-152 1207-1287(2582)
34 KOG1202 Animal-type fatty acid 97.3 0.00011 2.4E-09 70.8 1.9 53 83-135 2008-2061(2376)
35 PF07377 DUF1493: Protein of u 96.8 0.003 6.5E-08 45.3 5.4 58 78-135 2-64 (111)
36 PF10501 Ribosomal_L50: Riboso 96.5 0.026 5.5E-07 40.6 8.1 75 76-150 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 94.4 0.21 4.6E-06 42.9 7.9 77 75-151 3-92 (386)
38 KOG2452 Formyltetrahydrofolate 92.5 0.34 7.4E-06 43.5 6.1 76 78-154 321-397 (881)
39 KOG1178 Non-ribosomal peptide 91.9 0.21 4.6E-06 48.3 4.3 66 83-150 602-667 (1032)
40 PF08766 DEK_C: DEK C terminal 72.7 10 0.00022 23.4 4.3 24 109-132 17-40 (54)
41 TIGR03853 matur_matur probable 41.0 59 0.0013 22.0 3.9 40 112-151 17-57 (77)
42 PF03471 CorC_HlyC: Transporte 39.3 42 0.00091 22.0 3.1 27 119-148 16-42 (81)
43 PF10678 DUF2492: Protein of u 39.3 76 0.0017 21.5 4.3 41 111-151 18-59 (78)
44 KOG2573 Ribosome biogenesis pr 29.8 35 0.00077 30.2 1.8 47 97-143 222-271 (498)
45 COG1151 6Fe-6S prismane cluste 24.3 83 0.0018 29.0 3.2 28 105-132 464-493 (576)
46 PF00763 THF_DHG_CYH: Tetrahyd 24.3 1.6E+02 0.0035 20.9 4.2 45 110-154 41-85 (117)
47 PF00874 PRD: PRD domain; Int 22.6 77 0.0017 19.9 2.1 21 115-135 59-79 (89)
48 COG1669 Predicted nucleotidylt 20.3 3.2E+02 0.0069 19.2 8.2 61 79-139 9-83 (97)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=3.8e-18 Score=125.40 Aligned_cols=80 Identities=48% Similarity=0.651 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhh
Q 031600 75 AAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKA 153 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~ 153 (156)
..+.++.++|..++..+..++++.++.+++|. |||+|||+.|||+|.||++||++||+++.+++.|+++.++||..+..
T Consensus 49 l~k~~v~~RVl~VVk~~dki~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 49 LAKKEVVDRVLDVVKKFDKIDPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhccc
Confidence 45889999999999999999999999999998 99999999999999999999999999999999999999999998765
Q ss_pred c
Q 031600 154 A 154 (156)
Q Consensus 154 ~ 154 (156)
.
T Consensus 129 ~ 129 (131)
T KOG1748|consen 129 V 129 (131)
T ss_pred c
Confidence 4
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.72 E-value=1.3e-17 Score=113.77 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHh-CCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 77 QPETLQTVQSTIAKQL-SIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 77 ~~ei~~~I~~ii~~~l-~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
++++.++|++++++++ +++.++++++++|.|||+|||+.+++++.+|++||++||++++.++.|++++++||.+++
T Consensus 3 ~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 3 KQRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 6789999999999999 799999999999999999999999999999999999999999999999999999999863
No 3
>PRK05883 acyl carrier protein; Validated
Probab=99.71 E-value=4.9e-17 Score=113.62 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhh
Q 031600 75 AAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKA 153 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~ 153 (156)
.+..+|.+++++++++.++++.+.++++++|. +||||||..++++..||++||++|+++++.++.||+++++||.++++
T Consensus 10 ~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~~ 89 (91)
T PRK05883 10 SSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKVR 89 (91)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHcc
Confidence 56889999999999999999999999999995 99999999999999999999999999999999999999999999875
Q ss_pred c
Q 031600 154 A 154 (156)
Q Consensus 154 ~ 154 (156)
.
T Consensus 90 ~ 90 (91)
T PRK05883 90 D 90 (91)
T ss_pred C
Confidence 4
No 4
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.71 E-value=3.1e-17 Score=112.62 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhcc
Q 031600 78 PETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAAS 155 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~~ 155 (156)
.++.+++++++++.++++.++++++++|. |||||||++++++..+|++||++||.+++.++.|++++++||.++++++
T Consensus 3 m~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~~ 81 (82)
T PRK08172 3 MDIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLESR 81 (82)
T ss_pred ccHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999995 9999999999999999999999999999999999999999999988764
No 5
>PRK05828 acyl carrier protein; Validated
Probab=99.70 E-value=6.8e-17 Score=111.43 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHH-HhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhc
Q 031600 76 AQPETLQTVQSTIAK-QLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~-~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~ 154 (156)
.+.+|.++|++++++ .++++.+.++.++.|.|||+|||+.+++++.+|++||++||++++.++.|++++++||.++++.
T Consensus 2 ~~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~~~ 81 (84)
T PRK05828 2 QEMEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELKKQ 81 (84)
T ss_pred CHHHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHHhc
Confidence 478999999999998 6899999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 031600 155 S 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 82 ~ 82 (84)
T PRK05828 82 K 82 (84)
T ss_pred c
Confidence 3
No 6
>PRK05350 acyl carrier protein; Provisional
Probab=99.70 E-value=4.7e-17 Score=111.22 Aligned_cols=79 Identities=27% Similarity=0.492 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhc
Q 031600 76 AQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~ 154 (156)
.++++.++|++++++.++++.+.++++++|. +||+||++.++++..+|++||++|+++++.++.|++++++||.+++++
T Consensus 3 ~~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~~~ 82 (82)
T PRK05350 3 TREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLKE 82 (82)
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999985 999999999999999999999999999999999999999999998753
No 7
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.67 E-value=1.5e-16 Score=108.36 Aligned_cols=78 Identities=46% Similarity=0.707 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhc
Q 031600 77 QPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154 (156)
Q Consensus 77 ~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~ 154 (156)
++++.+++++++++.++++.+.++++++|. +||+||++.++|+..+|++||++++.+++.++.|++++++||.++++.
T Consensus 3 ~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 81 (82)
T CHL00124 3 KNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKINK 81 (82)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhcc
Confidence 678999999999999999989999999997 599999999999999999999999999999999999999999998764
No 8
>PRK12449 acyl carrier protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=106.98 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 77 QPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 77 ~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
++++.+++++++++.++++...+++++.|. ||||||++.+++++.+|++||+++|+.++.++.|++++++||.+++
T Consensus 3 ~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 3 REEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 678999999999999999889999999995 9999999999999999999999999999999999999999999875
No 9
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.64 E-value=4.2e-16 Score=104.95 Aligned_cols=74 Identities=54% Similarity=0.795 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 78 PETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
+++.++|++++++.++++.+++++++.|. +||+||++.++++..+|++||+++|.+++.++.|++++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 46889999999999999989999999995 899999999999999999999999999999999999999999875
No 10
>PRK07639 acyl carrier protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=105.41 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccc--cCCCCHHHHHHHHHHH
Q 031600 76 AQPETLQTVQSTIAKQLSIDL-SAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGA--ENIATVQDAADLIEKV 151 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~~l~~~~-~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l--~~~~Tv~~l~~~I~~~ 151 (156)
.++++.++|+.++++.++.+. ++++++++|. +||+||++.+++++.||++||++||++++ .++.|++++++||.++
T Consensus 2 ~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~ 81 (86)
T PRK07639 2 RREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEEL 81 (86)
T ss_pred CHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHh
Confidence 367899999999999999975 8899999997 89999999999999999999999999987 6999999999999988
Q ss_pred hhc
Q 031600 152 KAA 154 (156)
Q Consensus 152 ~~~ 154 (156)
.+.
T Consensus 82 ~~~ 84 (86)
T PRK07639 82 QPL 84 (86)
T ss_pred hcc
Confidence 753
No 11
>PTZ00171 acyl carrier protein; Provisional
Probab=99.64 E-value=8.5e-16 Score=116.18 Aligned_cols=82 Identities=39% Similarity=0.641 Sum_probs=77.0
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
...++++.++|++++++.++++.+.++++++|. |||||||+.+||+..||++||+.||++++.++.|++++++||.++.
T Consensus 65 ~~~~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 65 LLSKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 355889999999999999999999999999996 9999999999999999999999999999999999999999999987
Q ss_pred hcc
Q 031600 153 AAS 155 (156)
Q Consensus 153 ~~~ 155 (156)
...
T Consensus 145 ~~~ 147 (148)
T PTZ00171 145 MAK 147 (148)
T ss_pred hcc
Confidence 654
No 12
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.62 E-value=1.3e-15 Score=102.60 Aligned_cols=75 Identities=53% Similarity=0.808 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCc-cccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 78 PETLQTVQSTIAKQLSIDLSAVTPDTKF-ADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~i~~d~~f-~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
.++.+.+++++++.+|++.+.++++++| .++|+||++.++++..+|++||+++|.+++.++.|++++++||.+++
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 4588999999999999999999999999 69999999999999999999999999999999999999999998765
No 13
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=2.7e-15 Score=102.05 Aligned_cols=76 Identities=45% Similarity=0.668 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 77 QPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 77 ~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
.+.+..++++++.+.++++..+++.++.|. |||+|||+.++|++.||++||++||++++.++.|++++++||.++.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred hHHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 456899999999999999988999999997 7999999999999999999999999999999999999999999864
No 14
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.58 E-value=8.2e-15 Score=95.23 Aligned_cols=67 Identities=37% Similarity=0.640 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHH
Q 031600 82 QTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLI 148 (156)
Q Consensus 82 ~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I 148 (156)
++|+++++++++++.++++++++|.++|+||+..+++...++++||++++..++.+++|++++++||
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4789999999999999999999999999999999999999999999999999999999999999986
No 15
>PRK09184 acyl carrier protein; Provisional
Probab=99.58 E-value=7.8e-15 Score=102.18 Aligned_cols=77 Identities=17% Similarity=0.389 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHhCC---CCCCCCCCCCc-c-ccCCChHHHHHHHHHHHHHhCCccCcccc---cCCCCHHHHHHHH
Q 031600 77 QPETLQTVQSTIAKQLSI---DLSAVTPDTKF-A-DLGADSLDTVEIMMALEEQFGVSVGEEGA---ENIATVQDAADLI 148 (156)
Q Consensus 77 ~~ei~~~I~~ii~~~l~~---~~~~i~~d~~f-~-dLGlDSL~~veii~~iee~f~i~I~~~~l---~~~~Tv~~l~~~I 148 (156)
.++++++|++++.+.+++ ++++++++++| . +||+||++.++|++.+|++||++|+.++. ..+.||+++++||
T Consensus 4 ~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I 83 (89)
T PRK09184 4 MTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYV 83 (89)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHH
Confidence 567999999999999985 88999999998 3 69999999999999999999999986654 5689999999999
Q ss_pred HHHhh
Q 031600 149 EKVKA 153 (156)
Q Consensus 149 ~~~~~ 153 (156)
.++..
T Consensus 84 ~~~~~ 88 (89)
T PRK09184 84 AAHRT 88 (89)
T ss_pred HHhhc
Confidence 98653
No 16
>PRK06508 acyl carrier protein; Provisional
Probab=99.54 E-value=1.2e-14 Score=101.97 Aligned_cols=78 Identities=28% Similarity=0.459 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCccccc-----------CCCCHHHHH
Q 031600 78 PETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGAE-----------NIATVQDAA 145 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l~-----------~~~Tv~~l~ 145 (156)
..+.++|++++++.++++.+.+++++.|. +||||||++++|+..+|++|||.||.+++. .+.|+++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~ 81 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLC 81 (93)
T ss_pred hHHHHHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHH
Confidence 45889999999999999999999999986 999999999999999999999999998875 444788889
Q ss_pred HHHHHHhhcc
Q 031600 146 DLIEKVKAAS 155 (156)
Q Consensus 146 ~~I~~~~~~~ 155 (156)
.+|.+..++.
T Consensus 82 ~~i~~~~~~~ 91 (93)
T PRK06508 82 AKIDELVAAK 91 (93)
T ss_pred HHHHHHHHhh
Confidence 9998877654
No 17
>PRK07081 acyl carrier protein; Provisional
Probab=99.53 E-value=1.9e-14 Score=98.83 Aligned_cols=75 Identities=21% Similarity=0.432 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhCC--CCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCccccc--CCCCHHHHHHHHHHHhhcc
Q 031600 81 LQTVQSTIAKQLSI--DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAE--NIATVQDAADLIEKVKAAS 155 (156)
Q Consensus 81 ~~~I~~ii~~~l~~--~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~--~~~Tv~~l~~~I~~~~~~~ 155 (156)
+++|++++.+.++. +.+.++.+++|.++|+||++.++++..||++||++||++++. ++.|++.+++||.++++..
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~~ 80 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDAE 80 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhhh
Confidence 57889999998554 667899999999999999999999999999999999999984 5999999999999987654
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.41 E-value=8e-13 Score=89.93 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCccccC-CChHHHHHHHHHHHHHhCCccCccccc--CCCCHHHHHHHHHHH
Q 031600 79 ETLQTVQSTIAKQLSIDLSAVTPDTKFADLG-ADSLDTVEIMMALEEQFGVSVGEEGAE--NIATVQDAADLIEKV 151 (156)
Q Consensus 79 ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLG-lDSL~~veii~~iee~f~i~I~~~~l~--~~~Tv~~l~~~I~~~ 151 (156)
+++++|++++.+.++.+..+++.+++|.+.| +||++.+++++.+|++||++||++++. ++.|++.+++||.++
T Consensus 2 ~i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 4788999999999998877889999998655 899999999999999999999999985 599999999999875
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.20 E-value=2.3e-11 Score=81.77 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCccccCC-ChHHHHHHHHHHHHHhCCccCcccc--cCCCCHHHHHHHHH
Q 031600 82 QTVQSTIAKQLSIDLSAVTPDTKFADLGA-DSLDTVEIMMALEEQFGVSVGEEGA--ENIATVQDAADLIE 149 (156)
Q Consensus 82 ~~I~~ii~~~l~~~~~~i~~d~~f~dLGl-DSL~~veii~~iee~f~i~I~~~~l--~~~~Tv~~l~~~I~ 149 (156)
++|++++.++.|.+..+...+++|++.|+ ||+..++++..||++|||++|..++ .++.|++.+++++.
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 57889999998877656788999999996 9999999999999999999999998 79999999999875
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=98.96 E-value=2.7e-09 Score=73.61 Aligned_cols=77 Identities=34% Similarity=0.469 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc------ccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHH
Q 031600 76 AQPETLQTVQSTIAKQLSIDLSAVTPDTKFA------DLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIE 149 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~------dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~ 149 (156)
+-+.+.++|..++..++.-. .+++.++.+. ++-||||+.||++..+|++|++.||++.+.++.|++++++|+.
T Consensus 7 d~nav~~~i~g~~kkyl~~~-~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 7 DINAVTEYILGMLKKYLSEG-EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp -HHHHHHHHHHHHHTTB-TT-----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCC-CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 34568889999999888543 2355555553 5779999999999999999999999999999999999999998
Q ss_pred HHhh
Q 031600 150 KVKA 153 (156)
Q Consensus 150 ~~~~ 153 (156)
+.-+
T Consensus 86 ~~r~ 89 (96)
T PF14573_consen 86 QERQ 89 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.89 E-value=1.2e-08 Score=66.71 Aligned_cols=74 Identities=27% Similarity=0.314 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-CCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 78 PETLQTVQSTIAKQLSIDLSA-VTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~-i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
..+...+...+.+.++..... ++.+.+|.++|+||+..+++...++++|+++++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 446778888888998887655 48899999999999999999999999999999999999999999999999865
No 22
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.67 E-value=6.4e-08 Score=87.73 Aligned_cols=75 Identities=25% Similarity=0.244 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCC-CCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhh
Q 031600 79 ETLQTVQSTIAKQLSID-LSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKA 153 (156)
Q Consensus 79 ei~~~I~~ii~~~l~~~-~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~ 153 (156)
.+.+.|+..+++++|.+ .+.++.+.+|++||+|||+.+++..+|++.||+++|...+++++|+.+++++|...+.
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 35567888999999985 5679999999999999999999999999999999999999999999999999988764
No 23
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.67 E-value=3.7e-08 Score=100.24 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CccCcccccCCCCHHHHHHHHHHH
Q 031600 75 AAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFG--VSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~--i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
.+..++.++|++++++.+|++.++++.+.+|. |||+||++.+||++.++++|+ .+++++++.+++|++++++||..+
T Consensus 1303 ~~~~~v~~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1303 TDLIQIQNVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred ccHHHHHHHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 34578999999999999999999999999997 999999999999999999998 899999999999999999999876
Q ss_pred hh
Q 031600 152 KA 153 (156)
Q Consensus 152 ~~ 153 (156)
..
T Consensus 1383 ~~ 1384 (2582)
T TIGR02813 1383 VP 1384 (2582)
T ss_pred cc
Confidence 53
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.52 E-value=2.6e-07 Score=89.29 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHh
Q 031600 76 AQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVK 152 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~ 152 (156)
...++++.+.++++++++.+.++++.+++|+++|+|||..+++..+|++.||+.++..++.+.+|+.+++++|....
T Consensus 845 ~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 845 EFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 45678899999999999998778999999999999999999999999999999999999999999999999997643
No 25
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.47 E-value=4.1e-07 Score=87.06 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 75 AAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
....++++.+.+++++++|++ .++.+++|+++|.|||..+++..+|++.||++++..++.+.+|+++++++|.+.
T Consensus 974 ~~~~~~e~~l~~~~~~~l~~~--~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 974 APKTGTETIIAAAFSSLLGCD--VVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 456778899999999999987 689999999999999999999999999999999999999999999999999764
No 26
>PRK12467 peptide synthase; Provisional
Probab=98.39 E-value=6.9e-07 Score=94.18 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=70.6
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHH
Q 031600 73 CSAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEK 150 (156)
Q Consensus 73 ~~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~ 150 (156)
+..+..++++.+.++++++||++ .++.+++|++||.|||..++++.++++.||++++..++++.+|++++++++..
T Consensus 3599 ~~~p~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3599 YVAPRSEVEQQLAAIWADVLGVE--QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCC--CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 34567889999999999999986 49999999999999999999999999999999999999999999999999865
No 27
>PRK05691 peptide synthase; Validated
Probab=98.37 E-value=8.5e-07 Score=93.97 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=70.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
..++.++++.|.++++++|+++ .++.+++|+++|.|||..+.++.++++.||++++..++++++|+++++++|...
T Consensus 4236 ~~p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4236 LAPRNELEQTLATIWADVLKVE--RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 4567899999999999999985 599999999999999999999999999999999999999999999999999753
No 28
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.32 E-value=1.2e-06 Score=58.39 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhcc
Q 031600 84 VQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAAS 155 (156)
Q Consensus 84 I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~~ 155 (156)
+++.+.+.++..++++.++.++.+.|+||+-.|.+..+.++ -|..|+..++...+|++.+.+.+..+....
T Consensus 3 Lr~~~~~Ll~e~~~~l~dqeNLi~~GLDSiR~M~L~~~wR~-~G~~i~F~~La~~PTl~aW~qLl~~~~~~~ 73 (74)
T COG3433 3 LREQIAELLGESVEELDDQENLIDYGLDSIRMMALLERWRK-RGADIDFAQLAANPTLAAWWQLLSTRSKQP 73 (74)
T ss_pred HHHHHHHHHcCChhhcCchhhHHHhchhHHHHHHHHHHHHH-cCCcccHHHHHhCccHHHHHHHHHhcccCC
Confidence 45667777777888999999999999999999999999976 688889999999999999999999877654
No 29
>PRK12467 peptide synthase; Provisional
Probab=98.26 E-value=2.1e-06 Score=90.71 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
..+..++++.+.+++++++|++ .++.+++|++||.|||..++++.+++++||++++..++++.+|++++++++...
T Consensus 1025 ~~p~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1025 VAPQTELEKRLAAIWADVLKVE--RVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred cCCCCHHHHHHHHHHHHHhCCC--CCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 4557789999999999999985 599999999999999999999999999999999999999999999999998754
No 30
>PRK12316 peptide synthase; Provisional
Probab=98.24 E-value=2.4e-06 Score=91.76 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
.....++++.+..+++++|+++ .++.+++|++||+|||..+.+..+|+++||++++..++++.+|+++|+++|...
T Consensus 5067 ~~~~~~~e~~l~~i~~~vL~~~--~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5067 VAPRSELEQQVAAIWAEVLQLE--RVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCCCcHHHHHHHHHHHHHhCCC--CCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 3456789999999999999875 599999999999999999999999999999999999999999999999999754
No 31
>PRK05691 peptide synthase; Validated
Probab=98.22 E-value=3e-06 Score=89.95 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
.....++++.+.++++++||++ .++.+++|++||.|||..+.++.+++++||++++..++++.+|++++++++...
T Consensus 1633 ~~p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~ 1708 (4334)
T PRK05691 1633 VEPRTELQQQIAAIWREVLGLP--RVGLRDDFFALGGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVARI 1708 (4334)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--CCCCCCchHHhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhh
Confidence 3456789999999999999986 589999999999999999999999999999999999999999999999999764
No 32
>PRK12316 peptide synthase; Provisional
Probab=98.10 E-value=6.2e-06 Score=88.70 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHH
Q 031600 74 SAAQPETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 74 ~~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
.....++++.+..+++++++++ .++.+++|++||+|||..++++.+++++||++++..++++.+|+++++..+...
T Consensus 2511 ~~p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2511 VAPQEGLEQRLAAIWQAVLKVE--QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred cCCCCHHHHHHHHHHHHHhCCC--ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 3557788999999999999985 589999999999999999999999999999999999999999999999988654
No 33
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.00 E-value=8.1e-06 Score=83.72 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhC--CccCcccccCCCCHHHHHHHHHHH
Q 031600 75 AAQPETLQTVQSTIAKQLSIDLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFG--VSVGEEGAENIATVQDAADLIEKV 151 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~--i~I~~~~l~~~~Tv~~l~~~I~~~ 151 (156)
....++.+.+.+++++.+|++.+.++.+.+|. |||+||+..+||+..++++|+ .+++++++.+++|++++++|+...
T Consensus 1207 ~~~~~~~~~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1207 VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred cchhHHHHHHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 34677999999999999999999999999997 999999999999999999997 788899999999999999998654
Q ss_pred h
Q 031600 152 K 152 (156)
Q Consensus 152 ~ 152 (156)
.
T Consensus 1287 ~ 1287 (2582)
T TIGR02813 1287 V 1287 (2582)
T ss_pred c
Confidence 3
No 34
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.29 E-value=0.00011 Score=70.78 Aligned_cols=53 Identities=42% Similarity=0.583 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCC-CCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccc
Q 031600 83 TVQSTIAKQLSI-DLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGA 135 (156)
Q Consensus 83 ~I~~ii~~~l~~-~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l 135 (156)
.+...++.++|+ |...+++++++.|||+||||.+||...+|++|++-++..++
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEi 2061 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEI 2061 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHH
Confidence 466778889998 78899999999999999999999999999999999987776
No 35
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=96.84 E-value=0.003 Score=45.34 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhCC----CCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHhCCccCcccc
Q 031600 78 PETLQTVQSTIAKQLSI----DLSAVTPDTKFA-DLGADSLDTVEIMMALEEQFGVSVGEEGA 135 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~----~~~~i~~d~~f~-dLGlDSL~~veii~~iee~f~i~I~~~~l 135 (156)
+++.+.|.+.+.+..|. ....++.++++. |||++.-+..+++....++|+|++..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 46889999999999987 577899999996 99999999999999999999999865443
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=96.47 E-value=0.026 Score=40.61 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCC-CCCCCccccCC-ChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHH
Q 031600 76 AQPETLQTVQSTIAKQLSIDLSAV-TPDTKFADLGA-DSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEK 150 (156)
Q Consensus 76 ~~~ei~~~I~~ii~~~l~~~~~~i-~~d~~f~dLGl-DSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~ 150 (156)
+..++.+.|.+...+.++.+.... ..+..+.++-+ |--.-..+..++.+.+|..||+..+-.+.|++++.+|+..
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~~~~~~~~~~~~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEGFGSQSWNNDWLDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccCCccccccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 467889999999999998765443 34555655544 4456779999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=94.42 E-value=0.21 Score=42.87 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCC---------CCCCCCCCcc--ccCCChHHHHHHHHHHHHHhCCc-cCcccc-cCCCCH
Q 031600 75 AAQPETLQTVQSTIAKQLSIDL---------SAVTPDTKFA--DLGADSLDTVEIMMALEEQFGVS-VGEEGA-ENIATV 141 (156)
Q Consensus 75 ~~~~ei~~~I~~ii~~~l~~~~---------~~i~~d~~f~--dLGlDSL~~veii~~iee~f~i~-I~~~~l-~~~~Tv 141 (156)
...+.+...+..+|...+.--. ..+..|..+. ++|+|||..++|..++.+.|++. -..+++ ..-+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (386)
T TIGR02372 3 LDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRI 82 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccH
Confidence 3466788888899888874322 2377777773 78999999999999999999884 233443 567899
Q ss_pred HHHHHHHHHH
Q 031600 142 QDAADLIEKV 151 (156)
Q Consensus 142 ~~l~~~I~~~ 151 (156)
++++|.|.+.
T Consensus 83 ~~~~~~~~~~ 92 (386)
T TIGR02372 83 GEWVDLIAHH 92 (386)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 38
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=92.53 E-value=0.34 Score=43.46 Aligned_cols=76 Identities=22% Similarity=0.244 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhC-CccCcccccCCCCHHHHHHHHHHHhhc
Q 031600 78 PETLQTVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFG-VSVGEEGAENIATVQDAADLIEKVKAA 154 (156)
Q Consensus 78 ~ei~~~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~-i~I~~~~l~~~~Tv~~l~~~I~~~~~~ 154 (156)
..+.++++.++..+|.- .-++..+++|++-|..|.+.+.++..+....| .++..+++..-+|+++.++.+.+++..
T Consensus 321 ~~t~~~~~~iw~~il~k-v~~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lrg 397 (881)
T KOG2452|consen 321 LVTAEAVRSVWQRILPK-VLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLRG 397 (881)
T ss_pred HHHHHHHHHHHHHhcch-heeecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhcC
Confidence 34667888888888752 23478899999999999999999999998875 899999999999999999999888753
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.87 E-value=0.21 Score=48.30 Aligned_cols=66 Identities=26% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHH
Q 031600 83 TVQSTIAKQLSIDLSAVTPDTKFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEK 150 (156)
Q Consensus 83 ~I~~ii~~~l~~~~~~i~~d~~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~ 150 (156)
.+++.+-...+ ...+.++++|+++|+||+..+-++..++..+.++.|..-..+..|+..+..-+..
T Consensus 602 ~v~d~~l~~~~--~~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 602 TVFDLWLSIGS--LAIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred chhhhhhhhcC--ccccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 34444444444 2568889999999999999999999999999999999988999998887754443
No 40
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=72.71 E-value=10 Score=23.40 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=15.9
Q ss_pred CCChHHHHHHHHHHHHHhCCccCc
Q 031600 109 GADSLDTVEIMMALEEQFGVSVGE 132 (156)
Q Consensus 109 GlDSL~~veii~~iee~f~i~I~~ 132 (156)
+++++..-++...++++||+++..
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~ 40 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSS 40 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHH
Confidence 567888899999999999998874
No 41
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=41.00 E-value=59 Score=21.99 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHhCCccCcccc-cCCCCHHHHHHHHHHH
Q 031600 112 SLDTVEIMMALEEQFGVSVGEEGA-ENIATVQDAADLIEKV 151 (156)
Q Consensus 112 SL~~veii~~iee~f~i~I~~~~l-~~~~Tv~~l~~~I~~~ 151 (156)
++..-+|...|.++||-+.-...= .+-.|.++|++|+.++
T Consensus 17 ~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 17 PYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred CcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC
Confidence 445567888888888876544332 4667888888888765
No 42
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=39.35 E-value=42 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=18.9
Q ss_pred HHHHHHHhCCccCcccccCCCCHHHHHHHH
Q 031600 119 MMALEEQFGVSVGEEGAENIATVQDAADLI 148 (156)
Q Consensus 119 i~~iee~f~i~I~~~~l~~~~Tv~~l~~~I 148 (156)
+..+++.||++++.+ ++.|+++++-..
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~ 42 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQ 42 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHH
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHH
Confidence 345788899999884 566998876443
No 43
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=39.25 E-value=76 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHhCCccCcccc-cCCCCHHHHHHHHHHH
Q 031600 111 DSLDTVEIMMALEEQFGVSVGEEGA-ENIATVQDAADLIEKV 151 (156)
Q Consensus 111 DSL~~veii~~iee~f~i~I~~~~l-~~~~Tv~~l~~~I~~~ 151 (156)
.++..-+|...|.++||-+.-...= .+-.|.++|++|+.++
T Consensus 18 ~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 18 NPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred CCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 3455678888888888876554332 4667888888888765
No 44
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=29.75 E-value=35 Score=30.23 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=38.5
Q ss_pred CCCCCCC---CccccCCChHHHHHHHHHHHHHhCCccCcccccCCCCHHH
Q 031600 97 SAVTPDT---KFADLGADSLDTVEIMMALEEQFGVSVGEEGAENIATVQD 143 (156)
Q Consensus 97 ~~i~~d~---~f~dLGlDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~ 143 (156)
..++.|. .+.+||.||=..-+|+..-..-.|-+|++-|+.++.++.+
T Consensus 222 ~~l~ed~~~~~~e~l~~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~ 271 (498)
T KOG2573|consen 222 EKLNEDGLHELLEDLGVDSEKAQEIIEAAKNSMGQDISPADLENIRKFAE 271 (498)
T ss_pred hhccccchhHHHHHhcCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4455554 3458999999999999999999999999999988887764
No 45
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=24.31 E-value=83 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=24.6
Q ss_pred ccccC--CChHHHHHHHHHHHHHhCCccCc
Q 031600 105 FADLG--ADSLDTVEIMMALEEQFGVSVGE 132 (156)
Q Consensus 105 f~dLG--lDSL~~veii~~iee~f~i~I~~ 132 (156)
+.|+| .|+-..+.|...|.+.||++||+
T Consensus 464 VLd~GqCnD~~r~~~la~aLae~lgvdI~d 493 (576)
T COG1151 464 VLDFGQCNDIYRIIVLALALAEVLGLDIND 493 (576)
T ss_pred cccccccchHHHHHHHHHHHHHHhCCCCcc
Confidence 45777 79999999999999999998774
No 46
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.25 E-value=1.6e+02 Score=20.86 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHHhCCccCcccccCCCCHHHHHHHHHHHhhc
Q 031600 110 ADSLDTVEIMMALEEQFGVSVGEEGAENIATVQDAADLIEKVKAA 154 (156)
Q Consensus 110 lDSL~~veii~~iee~f~i~I~~~~l~~~~Tv~~l~~~I~~~~~~ 154 (156)
-+|...+....+.-+++|++.....+....|-+++.+.|.+....
T Consensus 41 ~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 41 PASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 578889999999999999999999998889999999998876554
No 47
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=22.57 E-value=77 Score=19.94 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCccCcccc
Q 031600 115 TVEIMMALEEQFGVSVGEEGA 135 (156)
Q Consensus 115 ~veii~~iee~f~i~I~~~~l 135 (156)
.-++...+++.||+.++++++
T Consensus 59 a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 59 AKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 457788889999999998875
No 48
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=20.29 E-value=3.2e+02 Score=19.20 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCC---------CCCCCCCCCc--c-c--cCCChHHHHHHHHHHHHHhCCccCcccccCCC
Q 031600 79 ETLQTVQSTIAKQLSID---------LSAVTPDTKF--A-D--LGADSLDTVEIMMALEEQFGVSVGEEGAENIA 139 (156)
Q Consensus 79 ei~~~I~~ii~~~l~~~---------~~~i~~d~~f--~-d--LGlDSL~~veii~~iee~f~i~I~~~~l~~~~ 139 (156)
++.++++..+.+..|+. ..+-++++++ . + -|..-++.+++...|++-||+.++.-.-..+.
T Consensus 9 ~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~~ai~ 83 (97)
T COG1669 9 KILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTKDAIH 83 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecccccC
Confidence 34667777777665432 3344455544 2 3 47899999999999999999998754443333
Done!