Query 031602
Match_columns 156
No_of_seqs 141 out of 1086
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 100.0 9.9E-31 2.1E-35 186.6 13.2 131 11-154 5-137 (137)
2 PRK11597 heat shock chaperone 100.0 3.8E-30 8.3E-35 184.2 13.5 104 43-155 31-136 (142)
3 COG0071 IbpA Molecular chapero 100.0 1.2E-28 2.7E-33 177.9 14.3 108 42-154 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.6E-26 3.6E-31 154.6 11.8 92 46-141 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 3.6E-25 7.9E-30 148.3 11.0 92 45-141 1-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 1.4E-24 3E-29 147.4 12.2 100 48-154 1-102 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.3E-24 7.1E-29 143.0 12.0 89 45-141 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 6.7E-23 1.5E-27 135.5 10.6 82 48-141 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.9 8.6E-23 1.9E-27 133.4 8.6 79 48-141 2-81 (81)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 2.8E-22 6.2E-27 131.7 10.3 82 48-141 1-83 (83)
11 cd06498 ACD_alphaB-crystallin_ 99.9 2.7E-22 5.9E-27 132.0 9.9 82 49-142 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.9 1.1E-21 2.3E-26 129.8 10.0 82 47-140 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 1.2E-21 2.7E-26 128.6 9.8 81 49-141 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 2.1E-21 4.6E-26 128.6 9.6 83 51-141 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 1.2E-20 2.7E-25 123.9 11.1 88 48-141 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 6.6E-21 1.4E-25 125.9 9.6 82 51-141 5-87 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.3E-20 2.8E-25 123.6 9.7 79 50-140 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.4E-20 3.1E-25 123.5 8.4 78 52-141 5-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 2.1E-18 4.5E-23 130.1 7.1 110 42-154 82-193 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 1.3E-17 2.7E-22 111.0 8.7 80 49-140 10-90 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 5.5E-16 1.2E-20 114.5 11.0 100 44-155 62-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 7E-14 1.5E-18 88.8 9.5 80 49-141 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 6.8E-12 1.5E-16 80.8 9.6 70 49-143 1-70 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 3.5E-10 7.6E-15 83.1 11.2 78 44-145 91-171 (177)
25 cd06463 p23_like Proteins cont 99.1 1.4E-09 3E-14 70.1 9.4 75 50-144 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.8E-08 6E-13 64.6 8.0 76 48-143 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.5E-06 3.2E-11 55.3 11.1 77 45-141 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 1.2E-05 2.7E-10 54.8 10.3 78 45-143 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.3 7.3E-06 1.6E-10 65.9 9.3 65 53-140 260-327 (328)
30 cd06467 p23_NUDC_like p23_like 98.1 7E-05 1.5E-09 48.6 9.6 75 47-144 1-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 98.1 4.2E-05 9.2E-10 49.7 8.5 76 48-143 1-76 (84)
32 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00022 4.9E-09 46.5 10.0 75 47-144 1-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.9 0.00025 5.4E-09 46.7 10.3 79 46-144 3-85 (92)
34 cd06494 p23_NUDCD2_like p23-li 97.9 0.0003 6.4E-09 47.0 9.9 77 43-143 4-82 (93)
35 cd06488 p23_melusin_like p23_l 97.8 0.00046 1E-08 45.3 9.8 78 46-143 2-79 (87)
36 cd00237 p23 p23 binds heat sho 97.4 0.0045 9.8E-08 42.2 10.6 77 45-143 2-78 (106)
37 cd06492 p23_mNUDC_like p23-lik 96.8 0.033 7.1E-07 36.5 9.6 73 48-143 2-78 (87)
38 PLN03088 SGT1, suppressor of 96.8 0.012 2.5E-07 48.3 8.9 79 45-143 157-235 (356)
39 KOG1309 Suppressor of G2 allel 96.8 0.0072 1.6E-07 44.8 6.8 79 44-142 3-81 (196)
40 cd06495 p23_NUDCD3_like p23-li 96.4 0.067 1.5E-06 36.2 9.4 80 43-143 3-86 (102)
41 cd06490 p23_NCB5OR p23_like do 96.3 0.11 2.5E-06 33.9 9.8 75 47-143 1-79 (87)
42 KOG2265 Nuclear distribution p 93.3 1.1 2.4E-05 33.2 8.6 81 39-142 13-95 (179)
43 cd06482 ACD_HspB10 Alpha cryst 87.4 1.6 3.4E-05 28.6 4.6 34 109-143 8-41 (87)
44 cd06477 ACD_HspB3_Like Alpha c 86.1 3.4 7.4E-05 26.7 5.6 34 109-143 7-40 (83)
45 KOG3158 HSP90 co-chaperone p23 85.9 4.6 0.0001 30.0 6.7 80 41-142 4-83 (180)
46 cd06470 ACD_IbpA-B_like Alpha- 84.9 2.7 5.8E-05 27.4 4.8 35 109-144 11-45 (90)
47 cd06476 ACD_HspB2_like Alpha c 84.8 3.5 7.5E-05 26.6 5.2 33 109-142 7-39 (83)
48 cd06497 ACD_alphaA-crystallin_ 84.7 4 8.6E-05 26.5 5.4 33 109-142 10-42 (86)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 84.6 4.6 0.0001 25.9 5.7 33 109-142 7-39 (83)
50 PRK10743 heat shock protein Ib 84.5 4.8 0.0001 28.6 6.2 34 109-143 45-78 (137)
51 cd06471 ACD_LpsHSP_like Group 82.5 3.5 7.5E-05 26.8 4.6 34 109-143 10-43 (93)
52 PRK11597 heat shock chaperone 82.4 6.1 0.00013 28.3 6.1 32 111-143 45-76 (142)
53 cd06479 ACD_HspB7_like Alpha c 82.2 3.9 8.4E-05 26.3 4.6 33 109-142 8-40 (81)
54 cd06526 metazoan_ACD Alpha-cry 81.0 3.7 8E-05 26.2 4.2 33 110-143 8-40 (83)
55 COG5091 SGT1 Suppressor of G2 80.2 1.2 2.6E-05 35.6 1.9 81 44-143 176-256 (368)
56 cd06475 ACD_HspB1_like Alpha c 78.1 8 0.00017 25.0 5.1 34 109-143 10-43 (86)
57 cd06498 ACD_alphaB-crystallin_ 77.9 9.5 0.00021 24.6 5.4 33 109-142 7-39 (84)
58 cd06481 ACD_HspB9_like Alpha c 76.9 6.7 0.00015 25.4 4.5 34 109-143 7-40 (87)
59 KOG1667 Zn2+-binding protein M 76.8 18 0.00038 28.7 7.4 83 43-144 213-295 (320)
60 cd06472 ACD_ScHsp26_like Alpha 75.8 10 0.00022 24.6 5.2 34 109-143 9-43 (92)
61 PF00011 HSP20: Hsp20/alpha cr 74.6 12 0.00025 24.5 5.3 33 109-142 7-39 (102)
62 cd06464 ACD_sHsps-like Alpha-c 71.9 10 0.00023 23.6 4.4 35 109-144 7-41 (88)
63 COG0071 IbpA Molecular chapero 66.9 13 0.00029 26.3 4.5 32 111-143 52-83 (146)
64 PRK05518 rpl6p 50S ribosomal p 66.9 42 0.00091 25.0 7.3 45 67-140 13-57 (180)
65 PF13349 DUF4097: Domain of un 66.2 43 0.00094 23.6 8.5 82 45-138 66-147 (166)
66 PF14913 DPCD: DPCD protein fa 66.1 55 0.0012 24.7 9.3 77 44-143 86-170 (194)
67 PF01954 DUF104: Protein of un 65.3 7 0.00015 23.8 2.4 17 124-140 3-19 (60)
68 cd06480 ACD_HspB8_like Alpha-c 65.2 17 0.00037 24.0 4.4 30 54-83 58-88 (91)
69 PF12992 DUF3876: Domain of un 64.3 24 0.00051 23.5 5.0 40 43-83 24-68 (95)
70 cd06469 p23_DYX1C1_like p23_li 62.8 24 0.00053 21.6 4.7 29 54-83 36-65 (78)
71 TIGR03653 arch_L6P archaeal ri 61.7 62 0.0014 23.8 7.4 45 67-140 7-51 (170)
72 PTZ00027 60S ribosomal protein 61.4 52 0.0011 24.7 6.9 47 67-140 13-59 (190)
73 TIGR03654 L6_bact ribosomal pr 60.8 55 0.0012 24.1 6.9 44 67-140 11-54 (175)
74 cd06467 p23_NUDC_like p23_like 57.7 25 0.00054 22.0 4.1 31 110-140 9-39 (85)
75 PRK05498 rplF 50S ribosomal pr 56.1 67 0.0014 23.7 6.7 44 67-140 12-55 (178)
76 PF08308 PEGA: PEGA domain; I 55.8 40 0.00088 20.4 4.8 38 46-83 26-64 (71)
77 KOG3413 Mitochondrial matrix p 54.6 6 0.00013 28.5 0.9 25 118-142 66-90 (156)
78 PF14814 UB2H: Bifunctional tr 52.9 38 0.00083 21.7 4.4 45 94-139 27-73 (85)
79 KOG3260 Calcyclin-binding prot 52.5 62 0.0013 24.4 5.8 77 46-142 76-153 (224)
80 KOG3591 Alpha crystallins [Pos 51.8 24 0.00052 26.1 3.7 26 59-84 120-146 (173)
81 cd01759 PLAT_PL PLAT/LH2 domai 50.8 79 0.0017 21.7 7.2 43 109-155 44-87 (113)
82 PTZ00179 60S ribosomal protein 50.1 93 0.002 23.3 6.7 47 67-140 12-58 (189)
83 cd06494 p23_NUDCD2_like p23-li 49.3 38 0.00083 22.2 4.0 32 109-140 15-46 (93)
84 CHL00140 rpl6 ribosomal protei 46.1 95 0.0021 23.0 6.2 44 67-140 12-55 (178)
85 PF01491 Frataxin_Cyay: Fratax 45.5 27 0.00059 23.6 3.0 19 124-142 30-48 (109)
86 PRK00446 cyaY frataxin-like pr 44.5 22 0.00047 24.1 2.3 17 126-142 29-45 (105)
87 cd00503 Frataxin Frataxin is a 44.3 23 0.0005 23.9 2.4 18 124-141 28-45 (105)
88 TIGR03421 FeS_CyaY iron donor 43.1 25 0.00055 23.6 2.4 18 125-142 26-43 (102)
89 PF04972 BON: BON domain; Int 42.7 47 0.001 19.5 3.5 22 63-85 12-33 (64)
90 PF11033 ComJ: Competence prot 41.1 1.2E+02 0.0025 21.4 5.5 33 109-142 63-97 (125)
91 PF10988 DUF2807: Protein of u 40.6 96 0.0021 22.2 5.5 42 112-154 22-63 (181)
92 KOG3247 Uncharacterized conser 35.7 25 0.00053 29.8 1.8 77 43-144 2-81 (466)
93 TIGR03422 mito_frataxin fratax 35.5 25 0.00054 23.5 1.5 16 127-142 30-45 (97)
94 PRK14282 chaperone protein Dna 34.1 2.2E+02 0.0048 23.4 7.2 29 114-142 283-312 (369)
95 PF00347 Ribosomal_L6: Ribosom 32.9 1.2E+02 0.0026 18.5 5.7 17 67-84 2-18 (77)
96 PRK14298 chaperone protein Dna 31.5 2.7E+02 0.0058 23.1 7.3 31 112-142 270-300 (377)
97 cd02175 GH16_lichenase lichena 31.1 1.7E+02 0.0036 21.9 5.6 48 67-120 31-80 (212)
98 PF08845 SymE_toxin: Toxin Sym 30.3 94 0.002 18.6 3.3 22 61-83 34-56 (57)
99 PF06964 Alpha-L-AF_C: Alpha-L 29.8 2.1E+02 0.0047 20.5 6.0 28 115-142 149-176 (177)
100 PLN02355 probable galactinol-- 29.5 2.8E+02 0.006 25.6 7.3 38 117-154 716-757 (758)
101 PRK10568 periplasmic protein; 28.7 1E+02 0.0022 23.2 4.0 22 63-85 73-94 (203)
102 PF06977 SdiA-regulated: SdiA- 28.2 2.5E+02 0.0055 21.9 6.2 70 56-138 10-81 (248)
103 PRK14284 chaperone protein Dna 27.5 2.7E+02 0.0059 23.2 6.7 31 112-142 283-315 (391)
104 COG1965 CyaY Protein implicate 26.7 50 0.0011 22.5 1.8 17 126-142 30-46 (106)
105 PRK14296 chaperone protein Dna 24.6 3.8E+02 0.0082 22.2 7.0 29 114-142 281-309 (372)
106 PF05258 DUF721: Protein of un 23.2 79 0.0017 19.6 2.2 24 118-141 34-57 (89)
107 PRK14297 chaperone protein Dna 22.9 4.4E+02 0.0095 21.8 7.9 29 114-142 279-307 (380)
108 PRK14290 chaperone protein Dna 22.1 4.5E+02 0.0097 21.6 7.9 32 111-142 274-305 (365)
109 PF14869 DUF4488: Domain of un 22.0 2.6E+02 0.0057 19.8 4.7 30 44-76 26-55 (133)
110 COG0097 RplF Ribosomal protein 21.8 3.5E+02 0.0075 20.2 6.6 19 65-84 10-28 (178)
111 PRK01379 cyaY frataxin-like pr 21.7 80 0.0017 21.3 2.0 15 126-140 30-44 (103)
112 COG4004 Uncharacterized protei 21.2 2.4E+02 0.0052 18.7 4.1 33 46-83 25-57 (96)
113 COG2880 Uncharacterized protei 21.0 8.4 0.00018 24.0 -2.6 11 126-136 7-17 (67)
114 PF12970 DUF3858: Domain of Un 20.7 2.4E+02 0.0051 19.6 4.2 34 109-142 37-74 (116)
115 PRK14281 chaperone protein Dna 20.5 5.1E+02 0.011 21.6 7.0 29 114-142 293-321 (397)
116 PRK14291 chaperone protein Dna 20.3 3.9E+02 0.0085 22.1 6.3 29 114-142 282-311 (382)
117 PRK14301 chaperone protein Dna 20.2 4.7E+02 0.01 21.6 6.7 29 114-142 271-299 (373)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.97 E-value=9.9e-31 Score=186.55 Aligned_cols=131 Identities=21% Similarity=0.371 Sum_probs=106.2
Q ss_pred HhhhhhcchHHhhhhcCCCCCCCcccCCCCCcccceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEe
Q 031602 11 AVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILD-SPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRK 89 (156)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~i~e-~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~ 89 (156)
.|.+|..+...||++|+..+.... ......|++||++ ++++|.|.++|||++++||+|.+++ +.|+|+ |+++
T Consensus 5 ~~~~~~~~~~~~d~lf~~~~~~~~----~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~--ge~~ 77 (137)
T PRK10743 5 DLSPLYRSAIGFDRLFNLLENNQS----QSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVK--GAHA 77 (137)
T ss_pred ccChhhhcccCHHHHhhhhhhhhh----cccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEC
Confidence 566666777788888876654331 1111348999994 8999999999999999999999999 799999 6655
Q ss_pred ccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEecCCC-CCCCeEEEEe
Q 031602 90 REDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPP-PPKPKTVEVA 154 (156)
Q Consensus 90 ~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~~-~~~~~~I~I~ 154 (156)
.+ .++..|+++|+.+ |+|+|+|.||++|+.++ |+|+||||+|++||..+ ..++|+|+|+
T Consensus 78 ~~---~~~~~~~~~Er~~-g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 78 DE---QKERTYLYQGIAE-RNFERKFQLAENIHVRG--ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred cc---ccCCcEEEEEEEC-CEEEEEEECCCCcccCc--CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 43 3456799999998 99999999999999994 99999999999999743 4678999985
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=3.8e-30 Score=184.18 Aligned_cols=104 Identities=23% Similarity=0.364 Sum_probs=90.9
Q ss_pred ccceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCc
Q 031602 43 SSIPVDILD-SPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDA 121 (156)
Q Consensus 43 ~~p~~~i~e-~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v 121 (156)
..|++||+| ++++|+|.++|||++++||+|.+++ +.|+|+ |+++. +.++..|+++|+++ |.|+|+|.||++|
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~--ge~~~---~~~~~~~~~~Er~~-g~F~R~f~LP~~v 103 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVK--GTPEQ---PEKEVKWLHQGLVN-QPFSLSFTLAENM 103 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEE--EEEcc---ccCCCcEEEEEEeC-cEEEEEEECCCCc
Confidence 469999998 5789999999999999999999999 799999 55543 23566899999998 9999999999999
Q ss_pred ccCceEEEEeCcEEEEEEecCCC-CCCCeEEEEec
Q 031602 122 NVSAISAKCENGVLTIVVEKLPP-PPKPKTVEVAI 155 (156)
Q Consensus 122 ~~~~i~A~~~~GvL~I~~pK~~~-~~~~~~I~I~~ 155 (156)
|.+ +|+|+||||+|+|||..+ ..++++|+|+-
T Consensus 104 d~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 104 EVS--GATFVNGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred ccC--cCEEcCCEEEEEEeccCccccCCcEEEECC
Confidence 998 699999999999999743 46789999963
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=177.92 Aligned_cols=108 Identities=41% Similarity=0.661 Sum_probs=95.9
Q ss_pred cccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCc
Q 031602 42 VSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDA 121 (156)
Q Consensus 42 ~~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v 121 (156)
...|++||+++++.|+|.++|||++++||+|.+++ +.|+|+ |+++.+ ...+...|.++|+.+ |.|+|+|.||..|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~--g~~~~~-~~~~~~~~~~~e~~~-~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIR--GEREEE-EEEEEEGYLRRERAY-GEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEE--EEeccc-ccccCCceEEEEEEe-eeEEEEEECcccc
Confidence 46899999999999999999999999999999999 799999 667653 345566788899998 9999999999999
Q ss_pred ccCceEEEEeCcEEEEEEecCCCC-CCCeEEEEe
Q 031602 122 NVSAISAKCENGVLTIVVEKLPPP-PKPKTVEVA 154 (156)
Q Consensus 122 ~~~~i~A~~~~GvL~I~~pK~~~~-~~~~~I~I~ 154 (156)
+.+.++|+|+||+|+|+|||..++ .++++|+|+
T Consensus 113 ~~~~~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 113 DPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred cccceeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999999654 368888774
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=1.6e-26 Score=154.61 Aligned_cols=92 Identities=45% Similarity=0.716 Sum_probs=82.2
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCc
Q 031602 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSA 125 (156)
Q Consensus 46 ~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~ 125 (156)
++||+|++++|+|.++|||++++||+|++.+++.|+|+ |++..+ ....+..|++.|+.+ |.|+|+|.||.+|+.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~--g~~~~~-~~~~~~~~~~~e~~~-g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRIS--GERKKE-EEKKGDDWHRVERSS-GRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEE--EEeccc-ccccCCCEEEEEEec-cEEEEEEECCCCCCHHH
Confidence 47999999999999999999999999999974589999 666544 234466789999997 99999999999999999
Q ss_pred eEEEEeCcEEEEEEec
Q 031602 126 ISAKCENGVLTIVVEK 141 (156)
Q Consensus 126 i~A~~~~GvL~I~~pK 141 (156)
|+|+|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=3.6e-25 Score=148.26 Aligned_cols=92 Identities=36% Similarity=0.545 Sum_probs=81.4
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccC-CccccceEEEeeeeeCCeEEEEEECCCCccc
Q 031602 45 IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKRED-GEEEGCKCIRLERRVPQKLLRKFKLPEDANV 123 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~-~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~ 123 (156)
+++||+|+++.|+|.++|||++++||+|.+.+ +.|+|+ |+++... ....++.|+++|+.+ |.|+|+|.|| +++.
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~--g~~~~~~~~~~~~~~~~~~e~~~-g~f~r~~~lp-~v~~ 75 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTIS--AKRDESKDEKDKKGNYIRRERYY-GSFSRSFYLP-NVDE 75 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEccccccccccCCEEEEeeec-cEEEEEEECC-CCCH
Confidence 46899999999999999999999999999999 799999 5565432 223345799999998 9999999999 7999
Q ss_pred CceEEEEeCcEEEEEEec
Q 031602 124 SAISAKCENGVLTIVVEK 141 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK 141 (156)
+.|+|+|+||+|+|++||
T Consensus 76 ~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 76 EEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHCEEEEECCEEEEEEcC
Confidence 999999999999999998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=1.4e-24 Score=147.44 Aligned_cols=100 Identities=43% Similarity=0.669 Sum_probs=80.4
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
||.+++++|.|.++|||+++++|+|++.+ +.|+|+ |++. ....+..+...++++ +.|.|+|.||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~--g~~~---~~~~~~~~~~~~~~~-~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVIS--GKRK---EEEEDDRYYRSERRY-GSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEE--EEEE---GEECTTCEEEE-S-S-EEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Ccccee--ceee---eeeeeeeeeeccccc-ceEEEEEcCCCcCCcceEE
Confidence 78999999999999999999999999999 799999 5565 234445667778887 9999999999999999999
Q ss_pred EEEeCcEEEEEEecCCCCC--CCeEEEEe
Q 031602 128 AKCENGVLTIVVEKLPPPP--KPKTVEVA 154 (156)
Q Consensus 128 A~~~~GvL~I~~pK~~~~~--~~~~I~I~ 154 (156)
|.|+||+|+|++||..... .+++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999999996653 68999985
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=3.3e-24 Score=142.98 Aligned_cols=89 Identities=28% Similarity=0.487 Sum_probs=79.4
Q ss_pred ceeeEEECC-CeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCccc
Q 031602 45 IPVDILDSP-KDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANV 123 (156)
Q Consensus 45 p~~~i~e~~-~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~ 123 (156)
|++||++++ +.|.|.++|||+++++|+|.+.+ +.|+|+ |+++... ..+.+|+++|+.+ |.|+|+|.||.+++.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~--g~~~~~~--~~~~~~~~~e~~~-g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVT--GKKADEE--NEEREYLHRGIAK-RAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEcccc--cCCCcEEEEEEec-eEEEEEEECCCCceE
Confidence 689999975 99999999999999999999999 799999 6666552 2566788899997 999999999999987
Q ss_pred CceEEEEeCcEEEEEEec
Q 031602 124 SAISAKCENGVLTIVVEK 141 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK 141 (156)
. +|+|+||+|+|+||+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=6.7e-23 Score=135.51 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=70.8
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
+|+++++.|.|.++|||+++++|+|++.+ +.|+|+ |++... . ++..|.+ ..|+|+|.||++||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~--g~~~~~--~-~~~~~~~------~ef~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIH--GKHSER--Q-DDHGYIS------REFHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEcce--e-CCCCEEE------EEEEEEEECCCCCChHHeE
Confidence 69999999999999999999999999999 799999 555432 2 2334543 4599999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031602 128 AKC-ENGVLTIVVEK 141 (156)
Q Consensus 128 A~~-~~GvL~I~~pK 141 (156)
|+| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=8.6e-23 Score=133.36 Aligned_cols=79 Identities=25% Similarity=0.451 Sum_probs=70.1
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
+|.|+++.|.|.++|||++|+||+|++.+ +.|+|+ |+++.+ . + ..+ |+|+|+|.||.+||.++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~--ger~~~--~--~-------~~~-g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVH--AEKLAS--D--G-------TVM-NTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEecc--C--C-------CEE-EEEEEEEECCCCcCHHHeE
Confidence 68899999999999999999999999999 799999 666533 1 1 133 8999999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031602 128 AKC-ENGVLTIVVEK 141 (156)
Q Consensus 128 A~~-~~GvL~I~~pK 141 (156)
|+| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 997 99999999985
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=2.8e-22 Score=131.70 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=69.5
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
+|.+++++|.|.++|||++++||+|++.+ +.|+|+ |++... . .+..|++ ..|+|+|.||.+||.++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~--g~~~~~--~-~~~~~~~------~ef~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIH--GKHEER--Q-DEHGFIS------REFHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEceE--c-CCCCEEE------EEEEEEEECCCCcChHHeE
Confidence 47889999999999999999999999999 799999 554332 1 2233443 4599999999999999999
Q ss_pred EEE-eCcEEEEEEec
Q 031602 128 AKC-ENGVLTIVVEK 141 (156)
Q Consensus 128 A~~-~~GvL~I~~pK 141 (156)
|+| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 69999999997
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=2.7e-22 Score=132.02 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=69.7
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEE
Q 031602 49 ILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISA 128 (156)
Q Consensus 49 i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A 128 (156)
+.+++++|.|.++|||++++||+|++.+ +.|+|+ |++... . ++..|++ +.|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~--g~~~~~--~-~~~~~~~------~eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIH--GKHEER--Q-DEHGFIS------REFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEcce--e-CCCCEEE------EEEEEEEECCCCCChHHcEE
Confidence 6788999999999999999999999999 799999 555432 1 2333442 56999999999999999999
Q ss_pred EEe-CcEEEEEEecC
Q 031602 129 KCE-NGVLTIVVEKL 142 (156)
Q Consensus 129 ~~~-~GvL~I~~pK~ 142 (156)
+|+ ||+|+|++||.
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999984
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.1e-21 Score=129.75 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=70.0
Q ss_pred eeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCce
Q 031602 47 VDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAI 126 (156)
Q Consensus 47 ~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i 126 (156)
.+|+|+++.|.|.++|||+++++|+|++.+ +.|+|+ |++... .. ...+. . ++|+|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~--g~~~~~--~~-~~~~~-----~-~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEIT--GKHEEK--QD-EHGFV-----S-RCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEE--EEECcC--cC-CCCEE-----E-EEEEEEEECCCCCCHHHc
Confidence 589999999999999999999999999999 799999 555432 12 22222 2 679999999999999999
Q ss_pred EEEEe-CcEEEEEEe
Q 031602 127 SAKCE-NGVLTIVVE 140 (156)
Q Consensus 127 ~A~~~-~GvL~I~~p 140 (156)
+|+|+ ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99997 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1.2e-21 Score=128.57 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=67.8
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEE
Q 031602 49 ILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISA 128 (156)
Q Consensus 49 i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A 128 (156)
+..+++.|.|.++|||++++||+|++.+ +.|+|+ |++... .+ ...++ . +.|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~--g~~~~~--~~-~~~~~-----~-~eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVS--ARHPQR--MD-RHGFV-----S-REFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEE--EEEcce--ec-CCCEE-----E-EEEEEEEECCCCCChhhEEE
Confidence 4567899999999999999999999999 799999 555432 11 22233 2 67999999999999999999
Q ss_pred EEe-CcEEEEEEec
Q 031602 129 KCE-NGVLTIVVEK 141 (156)
Q Consensus 129 ~~~-~GvL~I~~pK 141 (156)
+|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 995 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=2.1e-21 Score=128.61 Aligned_cols=83 Identities=29% Similarity=0.504 Sum_probs=69.2
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEE
Q 031602 51 DSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKC 130 (156)
Q Consensus 51 e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~ 130 (156)
+..+.|.|.++||||+++||+|.+.+ +.|+|+ |++.... ......|. +.+ +.|+|+|.||.+||.++|+|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~--g~~~~~~-~~~~~~~~---~~~-~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVT--GKREKKN-EDEKGSFS---YEY-QEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEE--EEEeeec-ccCCCcEE---EEe-eEEEEEEECCCCcChHHeEEEe
Confidence 45689999999999999999999999 799999 5554432 22333443 344 8999999999999999999999
Q ss_pred -eCcEEEEEEec
Q 031602 131 -ENGVLTIVVEK 141 (156)
Q Consensus 131 -~~GvL~I~~pK 141 (156)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=1.2e-20 Score=123.94 Aligned_cols=88 Identities=43% Similarity=0.675 Sum_probs=76.8
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
++.++++.|.|.++|||+++++|+|++.+ +.|.|+ |++.... .....+...++.+ +.|.|+|.||..++.++++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~--g~~~~~~--~~~~~~~~~~~~~-~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTIS--GEREEEE--EEEENYLRRERSY-GSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEeccc--ccCCcEEEEEEeC-cEEEEEEECCCCcCHHHcE
Confidence 47889999999999999999999999999 799999 5565442 2222566778886 9999999999999999999
Q ss_pred EEEeCcEEEEEEec
Q 031602 128 AKCENGVLTIVVEK 141 (156)
Q Consensus 128 A~~~~GvL~I~~pK 141 (156)
|.|+||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=6.6e-21 Score=125.95 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=69.0
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEE
Q 031602 51 DSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKC 130 (156)
Q Consensus 51 e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~ 130 (156)
.+++.|+|.++|||++++||+|++.+ +.|+|+ |+++.+.+ ..+ ..++.+ |+|+|+|.||.+||.++|+|+|
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~--ger~~~~e-~~~----~~er~~-g~F~R~f~LP~~Vd~d~i~A~~ 75 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKD-GKVQVS--AERENRYD-CLG----SKKYSY-MNICKEFSLPPGVDEKDVTYSY 75 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEecccc-cCC----ccEEEE-EEEEEEEECCCCcChHHcEEEE
Confidence 35789999999999999999999999 799999 66655422 112 236776 9999999999999999999999
Q ss_pred eCc-EEEEEEec
Q 031602 131 ENG-VLTIVVEK 141 (156)
Q Consensus 131 ~~G-vL~I~~pK 141 (156)
+|| +|+|.-|.
T Consensus 76 ~~~~~l~i~~~~ 87 (87)
T cd06482 76 GLGSVVKIETPC 87 (87)
T ss_pred cCCCEEEEeeCC
Confidence 876 99999873
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=1.3e-20 Score=123.55 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=66.6
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEE
Q 031602 50 LDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAK 129 (156)
Q Consensus 50 ~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~ 129 (156)
-++++.|.|.++|||++|+||+|++.+ +.|+|+ |++..+. .+ ..+. . ++|+|+|.||.+|+.++|+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~--ge~~~~~--~~-~~~~-----~-r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIK--GQHGVRM--DE-HGFI-----S-RSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEE--EEEcccc--CC-CCEE-----E-EEEEEEEECCCCcchheEEEE
Confidence 367899999999999999999999999 799999 6665432 12 2232 1 579999999999999999999
Q ss_pred E-eCcEEEEEEe
Q 031602 130 C-ENGVLTIVVE 140 (156)
Q Consensus 130 ~-~~GvL~I~~p 140 (156)
| +||+|+|+.|
T Consensus 71 ~~~dGvL~I~~~ 82 (83)
T cd06477 71 LCHDGILVVETK 82 (83)
T ss_pred EcCCCEEEEEec
Confidence 8 8999999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.4e-20 Score=123.54 Aligned_cols=78 Identities=26% Similarity=0.501 Sum_probs=66.3
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEe
Q 031602 52 SPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCE 131 (156)
Q Consensus 52 ~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~ 131 (156)
.++.|.|.++||||+++||+|++.+ +.|+|+ |+++... . +. ++.+ +.|.|+|.||.+||.++++|+|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~--g~~~~~~--~-~~-----~~~~-~~f~r~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSD-NKLVVE--GKHEERE--D-EH-----GYVS-REFTRRYQLPEGVDPDSVTSSLS 72 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEEC-CEEEEE--EEEeeec--c-CC-----CEEE-EEEEEEEECCCCCChHHeEEEeC
Confidence 3469999999999999999999999 799999 5665431 1 11 2333 88999999999999999999999
Q ss_pred C-cEEEEEEec
Q 031602 132 N-GVLTIVVEK 141 (156)
Q Consensus 132 ~-GvL~I~~pK 141 (156)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 8 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.1e-18 Score=130.09 Aligned_cols=110 Identities=47% Similarity=0.753 Sum_probs=91.7
Q ss_pred cccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCc-cccceEEEeeeeeCCeEEEEEECCCC
Q 031602 42 VSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGE-EEGCKCIRLERRVPQKLLRKFKLPED 120 (156)
Q Consensus 42 ~~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~-~~~~~~~~~e~~~~~~f~r~~~LP~~ 120 (156)
.+.+++++.++.+.|.+.+++||+.+++++|.++++++|+|+ |+++.+..+ ..+..+++.|+.+ |.|.|.+.||++
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~is--Ge~~~e~e~~~~~~~~~~~E~~~-g~F~r~~~lPen 158 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTIS--GERKKEEEESGSGKKWKRVERKL-GKFKRRFELPEN 158 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEe--cccccccccccCCccceeehhcc-cceEeeecCCcc
Confidence 356788999999999999999999999999999995589999 666655322 2556788889997 999999999999
Q ss_pred cccCceEEEEeCcEEEEEEecCCCC-CCCeEEEEe
Q 031602 121 ANVSAISAKCENGVLTIVVEKLPPP-PKPKTVEVA 154 (156)
Q Consensus 121 v~~~~i~A~~~~GvL~I~~pK~~~~-~~~~~I~I~ 154 (156)
++.+.|+|.|+||||+|++||..+. .+.+...|.
T Consensus 159 v~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~ 193 (196)
T KOG0710|consen 159 VDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIA 193 (196)
T ss_pred ccHHHHHHHhhCCeEEEEEecccccccCCccceee
Confidence 9999999999999999999999652 344444433
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=1.3e-17 Score=111.00 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=67.5
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEE
Q 031602 49 ILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISA 128 (156)
Q Consensus 49 i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A 128 (156)
+..+++.|.|.+|+.||+++||+|++.+ +.|+|+ |+++... .++ .+. .++|.|+|.||.+||.+.|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~--Gkh~~~~--~e~-g~~------~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVS--GKHEEQQ--KEG-GIV------SKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEE--EEECccc--CCC-CEE------EEEEEEEEECCCCCCchhEEE
Confidence 3456889999999999999999999999 799999 5665432 222 232 278999999999999999999
Q ss_pred EEe-CcEEEEEEe
Q 031602 129 KCE-NGVLTIVVE 140 (156)
Q Consensus 129 ~~~-~GvL~I~~p 140 (156)
++. ||+|+|++|
T Consensus 78 ~l~~dGvL~IeaP 90 (91)
T cd06480 78 SLSPEGLLIIEAP 90 (91)
T ss_pred EeCCCCeEEEEcC
Confidence 997 999999998
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.5e-16 Score=114.49 Aligned_cols=100 Identities=25% Similarity=0.488 Sum_probs=82.5
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCccc
Q 031602 44 SIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANV 123 (156)
Q Consensus 44 ~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~ 123 (156)
....++..+++.|.|.+|+..|+|++|+|++.| +.|.|. |++... + +++.|. .++|.|+|.||.+||+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~--gkHeer--~-d~~G~v------~R~F~R~y~LP~~vdp 129 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVE--GKHEEK--E-DEHGYV------SRSFVRKYLLPEDVDP 129 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEE--eeeccc--c-CCCCeE------EEEEEEEecCCCCCCh
Confidence 346788899999999999999999999999999 799999 444432 2 233333 3789999999999999
Q ss_pred CceEEEE-eCcEEEEEEecCCCCC-CCeEEEEec
Q 031602 124 SAISAKC-ENGVLTIVVEKLPPPP-KPKTVEVAI 155 (156)
Q Consensus 124 ~~i~A~~-~~GvL~I~~pK~~~~~-~~~~I~I~~ 155 (156)
++|++++ .||+|+|++||..... ..|.|+|+.
T Consensus 130 ~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 130 TSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred hheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 9999999 6899999999995433 488998874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.55 E-value=7e-14 Score=88.81 Aligned_cols=80 Identities=41% Similarity=0.633 Sum_probs=68.0
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEE
Q 031602 49 ILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISA 128 (156)
Q Consensus 49 i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A 128 (156)
++++++.|.|.+++||+.+++++|.+.+ +.|.|+ +...... . .+... +.|.+.+.||..+++++++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~--~~~~~~~--~-------~~~~~-~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTIS--GKREEEE--E-------RERSY-GEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEcCCC--c-------ceEee-eeEEEEEECCCCcCHHHCEE
Confidence 4678899999999999999999999999 799999 4443321 1 13333 78999999999999999999
Q ss_pred EEeCcEEEEEEec
Q 031602 129 KCENGVLTIVVEK 141 (156)
Q Consensus 129 ~~~~GvL~I~~pK 141 (156)
.+.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.38 E-value=6.8e-12 Score=80.82 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=63.0
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEE
Q 031602 49 ILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISA 128 (156)
Q Consensus 49 i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A 128 (156)
++++++.+.|.+.+||+++++++|.+++ +.|.|+ + ..|.+.+.||..|++++.+|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~--~----------------------~~~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVN--F----------------------PPYLFELDLAAPIDDEKSSA 55 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEc--C----------------------CCEEEEEeCcccccccccEE
Confidence 3678999999999999999999999999 788886 2 23778899999999999999
Q ss_pred EEeCcEEEEEEecCC
Q 031602 129 KCENGVLTIVVEKLP 143 (156)
Q Consensus 129 ~~~~GvL~I~~pK~~ 143 (156)
++.+|.|.|+|+|.+
T Consensus 56 ~~~~~~l~i~L~K~~ 70 (78)
T cd06469 56 KIGNGVLVFTLVKKE 70 (78)
T ss_pred EEeCCEEEEEEEeCC
Confidence 999999999999984
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.19 E-value=3.5e-10 Score=83.13 Aligned_cols=78 Identities=32% Similarity=0.529 Sum_probs=62.7
Q ss_pred cceeeEEECCC-eEEEEEEcCCCCCCC-eEEEEecC-cEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCC
Q 031602 44 SIPVDILDSPK-DYIFFMDVPGRPKSD-IQVTVEDE-RTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPED 120 (156)
Q Consensus 44 ~p~~~i~e~~~-~~~l~~~lpG~~~ed-i~V~~~~~-~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~ 120 (156)
.+.+++.+.++ .++|.++|||+++++ |+|.+..+ ..|+|++ .+.+.+++.||..
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-----------------------~~~~~krv~L~~~ 147 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-----------------------GEKYLKRVALPWP 147 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-----------------------CCceEeeEecCCC
Confidence 57789998887 699999999999888 99999951 4555541 1446678999966
Q ss_pred cccCceEEEEeCcEEEEEEecCCCC
Q 031602 121 ANVSAISAKCENGVLTIVVEKLPPP 145 (156)
Q Consensus 121 v~~~~i~A~~~~GvL~I~~pK~~~~ 145 (156)
+.+.++|+|+||||+|++-+..+.
T Consensus 148 -~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 148 -DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred -ccceeeEEEeCceEEEEEeecCCC
Confidence 688899999999999999988543
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.09 E-value=1.4e-09 Score=70.12 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=65.0
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEE
Q 031602 50 LDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAK 129 (156)
Q Consensus 50 ~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~ 129 (156)
+++++.+.|.+.+||..+++++|.+.+ +.|.|++. .. . .+.|...+.|+..|++++.+++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~--~~-~----------------~~~~~~~~~L~~~I~~~~s~~~ 61 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVK--GG-G----------------GKEYLLEGELFGPIDPEESKWT 61 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEee--CC-C----------------CCceEEeeEccCccchhhcEEE
Confidence 578899999999999999999999999 79999843 11 0 2567888999999999999999
Q ss_pred EeCcEEEEEEecCCC
Q 031602 130 CENGVLTIVVEKLPP 144 (156)
Q Consensus 130 ~~~GvL~I~~pK~~~ 144 (156)
+.+|.|.|+|+|..+
T Consensus 62 ~~~~~l~i~L~K~~~ 76 (84)
T cd06463 62 VEDRKIEITLKKKEP 76 (84)
T ss_pred EeCCEEEEEEEECCC
Confidence 999999999999854
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.83 E-value=2.8e-08 Score=64.59 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=65.5
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
|++++++.+.|.+.+||+.++++.|.+.+ +.|.|++. .. + ...|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~--~~-------~----------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSII--LP-------G----------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEE--CC-------C----------CCeEEEecccccccCchhcE
Confidence 57889999999999999999999999999 79999732 10 0 14577788999999999999
Q ss_pred EEEeCcEEEEEEecCC
Q 031602 128 AKCENGVLTIVVEKLP 143 (156)
Q Consensus 128 A~~~~GvL~I~~pK~~ 143 (156)
+.+.+|.|.|+|.|..
T Consensus 61 ~~~~~~~vei~L~K~~ 76 (84)
T cd06466 61 VSVLPTKVEITLKKAE 76 (84)
T ss_pred EEEeCeEEEEEEEcCC
Confidence 9999999999999985
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.62 E-value=1.5e-06 Score=55.27 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=62.6
Q ss_pred ceeeEEECCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcc
Q 031602 45 IPVDILDSPKDYIFFMDVPGR--PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDAN 122 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~--~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~ 122 (156)
|.++++++++.+.|.+.+++. ++++++|.+.+ +.|.|++. ... ...|.-.+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~--~~~-----------------~~~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIK--SGD-----------------GKEYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEE--ETT-----------------SCEEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEE--ccC-----------------CceEEEEEEEeeeEc
Confidence 678999999999999999665 49999999999 79999722 111 134666788999999
Q ss_pred cCceEEEEeCcEEEEEEec
Q 031602 123 VSAISAKCENGVLTIVVEK 141 (156)
Q Consensus 123 ~~~i~A~~~~GvL~I~~pK 141 (156)
++..+..+.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.32 E-value=1.2e-05 Score=54.84 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=65.7
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 45 IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
|+++++.+.+.+.|.+.+||+ +++.|.+.. +.|.|++.+ .. + ...|.-.+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~--~~------~----------~~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKG--GG------G----------GKKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEc--CC------C----------CeeEEEEeEhhhhcccc
Confidence 578999999999999999998 889999999 799998421 00 1 13366678999999999
Q ss_pred ceEEEEeCcEEEEEEecCC
Q 031602 125 AISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 125 ~i~A~~~~GvL~I~~pK~~ 143 (156)
..+..+.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999986
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.26 E-value=7.3e-06 Score=65.95 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEe
Q 031602 53 PKDYIFFMDVPGR-PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCE 131 (156)
Q Consensus 53 ~~~~~l~~~lpG~-~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~ 131 (156)
.+.++|++.|||+ +..+|++.+.+ ..|.|... ...|.-.+.||..|+.+..+|.|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~----------------------~~~y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSP----------------------KPKYRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeC----------------------CCceEEEccCCCcccCCCceEEEc
Confidence 5899999999999 78999999999 79999621 124667899999999999999995
Q ss_pred --CcEEEEEEe
Q 031602 132 --NGVLTIVVE 140 (156)
Q Consensus 132 --~GvL~I~~p 140 (156)
.++|+|++|
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 499999998
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.09 E-value=7e-05 Score=48.55 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=60.1
Q ss_pred eeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCc
Q 031602 47 VDILDSPKDYIFFMDVP-GRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSA 125 (156)
Q Consensus 47 ~~i~e~~~~~~l~~~lp-G~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~ 125 (156)
+.++++++.+.|.+.+| ++.+++++|.+.. +.|.|+..+ . .+.-.-.|...|+++.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~----~------------------~~~l~~~L~~~I~~~~ 57 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG----G------------------EPLLDGELYAKVKVDE 57 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC----C------------------CceEcCcccCceeEcC
Confidence 35788999999999998 7899999999999 799997431 0 0111235888999999
Q ss_pred eEEEEeC-cEEEEEEecCCC
Q 031602 126 ISAKCEN-GVLTIVVEKLPP 144 (156)
Q Consensus 126 i~A~~~~-GvL~I~~pK~~~ 144 (156)
....+.+ ..|.|+|+|..+
T Consensus 58 s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 58 STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEEeCCCEEEEEEEECCC
Confidence 8888999 999999999853
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.08 E-value=4.2e-05 Score=49.74 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=62.9
Q ss_pred eEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceE
Q 031602 48 DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAIS 127 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~ 127 (156)
|++++++.+.|.+.++|+.++++.|.+.+ +.|.+++.+ . + ...|.-.+.|...|++++.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~--~-------~----------~~~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKL--P-------S----------GNDYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEEC--C-------C----------CCcEEEeeecCceecchhcE
Confidence 56788999999999999999999999999 799997431 0 0 12466678899999999888
Q ss_pred EEEeCcEEEEEEecCC
Q 031602 128 AKCENGVLTIVVEKLP 143 (156)
Q Consensus 128 A~~~~GvL~I~~pK~~ 143 (156)
.....+-+.|.|.|..
T Consensus 61 ~~v~~~kiei~L~K~~ 76 (84)
T cd06489 61 YKILSTKIEIKLKKTE 76 (84)
T ss_pred EEEeCcEEEEEEEcCC
Confidence 8888999999999984
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.94 E-value=0.00022 Score=46.52 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=58.7
Q ss_pred eeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCc
Q 031602 47 VDILDSPKDYIFFMDVP-GRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSA 125 (156)
Q Consensus 47 ~~i~e~~~~~~l~~~lp-G~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~ 125 (156)
++++++.+...|.+.+| |..++|++|.+.. +.|.|... .. ..+ -.-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~----~~-----------------~~~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK----DQ-----------------APL-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC----CC-----------------CeE-EeCcccCcccccC
Confidence 46788999999999996 9999999999999 78998621 00 011 1236889999999
Q ss_pred eEEEEeCc-EEEEEEecCCC
Q 031602 126 ISAKCENG-VLTIVVEKLPP 144 (156)
Q Consensus 126 i~A~~~~G-vL~I~~pK~~~ 144 (156)
..-.+++| .|.|.|.|..+
T Consensus 58 Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred cEEEEeCCCEEEEEEEECCC
Confidence 77777777 79999999853
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.94 E-value=0.00025 Score=46.74 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=63.4
Q ss_pred eeeEEECCCeEEEEEEcCCCCC---CCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEE-CCCCc
Q 031602 46 PVDILDSPKDYIFFMDVPGRPK---SDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFK-LPEDA 121 (156)
Q Consensus 46 ~~~i~e~~~~~~l~~~lpG~~~---edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~-LP~~v 121 (156)
.++++++++.+.|.+.+|+..+ +++.|.+.. +.|.|++.+ . + ...|.-.+. |-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~---~-----~-----------~~~~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHD---L-----N-----------GKNYRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEEC---C-----C-----------CcEEEEEehHhhCcc
Confidence 5789999999999999999976 999999999 799997321 0 1 123443454 88999
Q ss_pred ccCceEEEEeCcEEEEEEecCCC
Q 031602 122 NVSAISAKCENGVLTIVVEKLPP 144 (156)
Q Consensus 122 ~~~~i~A~~~~GvL~I~~pK~~~ 144 (156)
+++..+..+..+-+.|+|.|..+
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99998899999999999999853
No 34
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.89 E-value=0.0003 Score=46.98 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=62.8
Q ss_pred ccceeeEEECCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCc
Q 031602 43 SSIPVDILDSPKDYIFFMDVP-GRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDA 121 (156)
Q Consensus 43 ~~p~~~i~e~~~~~~l~~~lp-G~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v 121 (156)
..+.+.+..+.+.+.|.+.+| |.+..|+.|.+.. +.|.|...|+. + - .| .|+..|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~~-----------~-----l-~G------~L~~~I 59 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQE-----------V-----L-KG------KLFDSV 59 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCEE-----------E-----E-cC------cccCcc
Confidence 367899999999999999998 8999999999999 79999732211 1 0 13 578899
Q ss_pred ccCceEEEEeCcE-EEEEEecCC
Q 031602 122 NVSAISAKCENGV-LTIVVEKLP 143 (156)
Q Consensus 122 ~~~~i~A~~~~Gv-L~I~~pK~~ 143 (156)
+++.-.-++++|- |.|.|.|..
T Consensus 60 ~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 60 VADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcccCEEEEECCcEEEEEEEeCC
Confidence 9999888898875 899999984
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.81 E-value=0.00046 Score=45.27 Aligned_cols=78 Identities=14% Similarity=0.041 Sum_probs=64.6
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCc
Q 031602 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSA 125 (156)
Q Consensus 46 ~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~ 125 (156)
.+|++++++.+.|.+.+.|+.++++.|.+.. +.|.|++. - . + ...|.-.+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~--~--~-----~----------~~~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIV--F--E-----G----------NKEFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEE--C--C-----C----------CceEEEEeeccceEChhH
Confidence 4689999999999999999999999999998 78887621 1 0 0 124677788999999999
Q ss_pred eEEEEeCcEEEEEEecCC
Q 031602 126 ISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 126 i~A~~~~GvL~I~~pK~~ 143 (156)
.+.....+-+.|++.|.+
T Consensus 62 s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred cEEEecCcEEEEEEEeCC
Confidence 887888999999999985
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.42 E-value=0.0045 Score=42.24 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=60.4
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 45 IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
|++++++..+.+.|++.+|+ ..+++|.++. +.|.++|.+. ++ ..|.-.+.|-..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~--------~g-----------~~y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG--------DN-----------VKIYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC--------CC-----------cEEEEEEEeecccCcc
Confidence 77899999999999999999 5899999999 7999984321 11 2244467788889999
Q ss_pred ceEEEEeCcEEEEEEecCC
Q 031602 125 AISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 125 ~i~A~~~~GvL~I~~pK~~ 143 (156)
+.+.....--+.|.|.|..
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred cCeEEeCCceEEEEEEeCC
Confidence 8666666778888999985
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.78 E-value=0.033 Score=36.53 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=55.5
Q ss_pred eEEECCCeEEEEEEcC-C--CCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 48 DILDSPKDYIFFMDVP-G--RPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 48 ~i~e~~~~~~l~~~lp-G--~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
.+..+.+...|++.|| | .++.|++|.+.. +.|.|...|+. .+. .| .|...|+.+
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~----------~~i------~G------~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP----------PII------DG------ELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCCc----------eEE------eC------cccCccccc
Confidence 3566788899999996 4 789999999999 79999632110 010 13 578889999
Q ss_pred ceEEEEeCc-EEEEEEecCC
Q 031602 125 AISAKCENG-VLTIVVEKLP 143 (156)
Q Consensus 125 ~i~A~~~~G-vL~I~~pK~~ 143 (156)
.-.-++++| .|.|.|-|..
T Consensus 59 es~Wtled~~~l~i~L~K~~ 78 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKIN 78 (87)
T ss_pred ccEEEEeCCCEEEEEEEECC
Confidence 888889886 8999999984
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.75 E-value=0.012 Score=48.33 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=65.0
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 45 IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
+..+++.+++.+.|.+-+.|+.++++.|.+.. +.|.|+.. . . + ...|.-.+.|-..|+++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~--~--~-----~----------~~~y~~~~~L~~~I~p~ 216 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIE--V--P-----G----------EDAYHLQPRLFGKIIPD 216 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEe--c--C-----C----------Ccceeeccccccccccc
Confidence 66899999999999999999999999999999 78988732 1 1 1 12355567888999999
Q ss_pred ceEEEEeCcEEEEEEecCC
Q 031602 125 AISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 125 ~i~A~~~~GvL~I~~pK~~ 143 (156)
..+..+...-+.|+|.|..
T Consensus 217 ~s~~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 217 KCKYEVLSTKIEIRLAKAE 235 (356)
T ss_pred ccEEEEecceEEEEEecCC
Confidence 9888888789999999985
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.75 E-value=0.0072 Score=44.83 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=60.4
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCccc
Q 031602 44 SIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANV 123 (156)
Q Consensus 44 ~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~ 123 (156)
.+.+|++++....+|.+-.+|+.++|+.|.+.+ +.|.+... ... ...|.-...|-..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~--~~~-----------------g~~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQ--LPS-----------------GSEYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEe--cCC-----------------chhhhhhHHhcccccc
Confidence 567899999999999999999999999999998 78888622 111 1234444456677888
Q ss_pred CceEEEEeCcEEEEEEecC
Q 031602 124 SAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK~ 142 (156)
++.+-..----+.|+|+|.
T Consensus 63 e~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cceeeEeeeeeEEEEeccc
Confidence 8766666667788888885
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.41 E-value=0.067 Score=36.24 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=60.8
Q ss_pred ccceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEeCcEEeccCCccccc-eEEEeeeeeCCeEEEEEECCC
Q 031602 43 SSIPVDILDSPKDYIFFMDVP-GR-PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGC-KCIRLERRVPQKLLRKFKLPE 119 (156)
Q Consensus 43 ~~p~~~i~e~~~~~~l~~~lp-G~-~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~-~~~~~e~~~~~~f~r~~~LP~ 119 (156)
....+.+..|-+.+.|.+.|| |. +..+|.|.+.. +.|.|...+ .++. .+. .| .|+.
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~--------~~~~~~~i------~G------~L~~ 61 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRD--------GGGEKVLM------EG------EFTH 61 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEec--------CCCCceEE------eC------cccC
Confidence 356789999999999999999 64 57899999999 799996211 0000 111 13 5788
Q ss_pred CcccCceEEEEeCc-EEEEEEecCC
Q 031602 120 DANVSAISAKCENG-VLTIVVEKLP 143 (156)
Q Consensus 120 ~v~~~~i~A~~~~G-vL~I~~pK~~ 143 (156)
.|+.+.-.-++++| .|.|+|-|..
T Consensus 62 ~V~~des~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 62 KINTENSLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred cccCccceEEEeCCCEEEEEEEECC
Confidence 99999888889986 5899999984
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.30 E-value=0.11 Score=33.88 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=53.8
Q ss_pred eeEEECCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 47 VDILDSPKDYIFFMDVPGR--PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 47 ~~i~e~~~~~~l~~~lpG~--~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
.|++.+++...|.+-..+. ...++.+.... +.|.|+.. .. + ..|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~--~~-------~-----------~~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEII--LG-------D-----------KSYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEE--CC-------C-----------ceEEEeeeccccCCCC
Confidence 4789999999999998864 44556666666 68888621 10 0 2366677888888877
Q ss_pred ceEEEEe--CcEEEEEEecCC
Q 031602 125 AISAKCE--NGVLTIVVEKLP 143 (156)
Q Consensus 125 ~i~A~~~--~GvL~I~~pK~~ 143 (156)
. +..+. -|-+.|+|.|.+
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKE 79 (87)
T ss_pred c-EEEEcccCceEEEEEEcCC
Confidence 5 55554 789999999985
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=93.25 E-value=1.1 Score=33.23 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCCcccceeeEEECCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEE
Q 031602 39 SKGVSSIPVDILDSPKDYIFFMDVP-GR-PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFK 116 (156)
Q Consensus 39 ~~~~~~p~~~i~e~~~~~~l~~~lp-G~-~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~ 116 (156)
..+...+.+.+..|=..+.|.+.+| |+ +..+|.+.+.. ..|.|...|.. -+. .| .
T Consensus 13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~----------~il------dG------~ 69 (179)
T KOG2265|consen 13 GNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP----------PIL------DG------E 69 (179)
T ss_pred cCCccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC----------cee------cC------c
Confidence 4455678899999999999999887 88 88999999999 89998522111 111 24 5
Q ss_pred CCCCcccCceEEEEeCcEEEEEEecC
Q 031602 117 LPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 117 LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
|...|+.+...-++++|.+.|.+-++
T Consensus 70 L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 70 LSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cccccccccceEEecCCEEEEEEeec
Confidence 77788889888999999777766665
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=87.40 E-value=1.6 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=30.4
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-+..|| +++++.|+-++.+|.|+|+.-+..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 4577789999 999999999999999999998864
No 44
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=86.08 E-value=3.4 Score=26.74 Aligned_cols=34 Identities=12% Similarity=-0.041 Sum_probs=30.4
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-++.|| +++++.|+-.+++|.|+|+--+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 7 PMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred ceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4578889999 999999999999999999998764
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=4.6 Score=29.96 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=57.7
Q ss_pred CcccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCC
Q 031602 41 GVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPED 120 (156)
Q Consensus 41 ~~~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~ 120 (156)
.+..|.+.+++..+-+.+++.++-. .+..|.++. ..|+++|. .... ...+..+|.|=..
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k--~~~d----------------~~~~~~~ief~~e 62 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCK--SGAD----------------NHKYENEIEFFDE 62 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEec--cCCC----------------ceeeEEeeehhhh
Confidence 3457888999999999999999854 566778888 68999843 2221 2446667888889
Q ss_pred cccCceEEEEeCcEEEEEEecC
Q 031602 121 ANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 121 v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
|++++.+-+-. +.+...++++
T Consensus 63 Idpe~sk~k~~-~r~if~i~~K 83 (180)
T KOG3158|consen 63 IDPEKSKHKRT-SRSIFCILRK 83 (180)
T ss_pred cCHhhcccccc-ceEEEEEEEc
Confidence 99998766555 6666666655
No 46
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=84.93 E-value=2.7 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.7
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPP 144 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~~ 144 (156)
..|.-.+.|| +++.+.|+-.++++.|+|+..+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 4688889999 8999999999999999999887643
No 47
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=84.77 E-value=3.5 Score=26.62 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=29.8
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| +++++.|+.++.||.|+|+.-+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5688889999 99999999999999999999764
No 48
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=84.66 E-value=4 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=29.8
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| +++++.|+..+.+|.|+|+.-+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5688899999 99999999999999999998754
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=84.59 E-value=4.6 Score=25.92 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=29.7
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5688899999 99999999999999999999754
No 50
>PRK10743 heat shock protein IbpA; Provisional
Probab=84.52 E-value=4.8 Score=28.60 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=28.5
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-...|| +++.+.|+.++++|+|+|+.-+..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 3455567899 999999999999999999997664
No 51
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=82.53 E-value=3.5 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 5677889999 899999999999999999988763
No 52
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=82.45 E-value=6.1 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=27.1
Q ss_pred EEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 111 LLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 111 f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
|.-+..|| +++.+.|.-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44457899 999999999999999999998653
No 53
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=82.23 E-value=3.9 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=29.8
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| .++++.|+-++++|.|+|+.-|.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 5688889999 99999999999999999998875
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=81.00 E-value=3.7 Score=26.15 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=30.0
Q ss_pred eEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 110 KLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 110 ~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
.|.-.+.|| ++.++.|+..++++.|+|+..+..
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 688899999 799999999999999999998774
No 55
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=80.15 E-value=1.2 Score=35.58 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=61.7
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCccc
Q 031602 44 SIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANV 123 (156)
Q Consensus 44 ~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~ 123 (156)
...++..+|.+...|-+--|-+..++|.+.+++ ++|.|+. +... .+ --|.-.++|-..|.+
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~--q~~~-------------~~---~~~~~~~~Ly~ev~P 236 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISY--QPRR-------------LR---LWNDITISLYKEVYP 236 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeee--eccc-------------cc---hHHHhhhhhhhhcCc
Confidence 355677889999999999999999999999999 8999972 1111 11 235557788889999
Q ss_pred CceEEEEeCcEEEEEEecCC
Q 031602 124 SAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK~~ 143 (156)
+..+-..---++.|++-|..
T Consensus 237 ~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 237 DIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred chhhhhhcchhheehhhhhh
Confidence 98777765678888888873
No 56
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=78.07 E-value=8 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=30.5
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 5688899999 999999999999999999997753
No 57
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=77.90 E-value=9.5 Score=24.56 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=29.4
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| +++++.|+..+.+|.|+|..-+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 5688889998 99999999999999999999654
No 58
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=76.87 E-value=6.7 Score=25.43 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=30.0
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..|.-.+.|| .+.++.|+.+++++.|+|+.-+..
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 4588889999 999999999999999999998753
No 59
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=76.82 E-value=18 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=67.6
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcc
Q 031602 43 SSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDAN 122 (156)
Q Consensus 43 ~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~ 122 (156)
..-..|+..++..++|.+..-|.-++.--|...+ ..|.|+. .-.. + ...|...+.|=.-|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~i--vf~~------g----------na~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSI--VFGF------G----------NASFDLDYKLWGVVN 273 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEE--EecC------C----------Cceeeccceeeeeec
Confidence 4566799999999999999999999998898888 7888862 1111 1 156888888888889
Q ss_pred cCceEEEEeCcEEEEEEecCCC
Q 031602 123 VSAISAKCENGVLTIVVEKLPP 144 (156)
Q Consensus 123 ~~~i~A~~~~GvL~I~~pK~~~ 144 (156)
++..++.+-.--..|+|+|.++
T Consensus 274 ve~s~v~m~~tkVEIsl~k~ep 295 (320)
T KOG1667|consen 274 VEESSVVMGETKVEISLKKAEP 295 (320)
T ss_pred hhhceEEeecceEEEEEeccCC
Confidence 9999999999999999999865
No 60
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=75.80 E-value=10 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.8
Q ss_pred CeEEEEEECCCCcccCceEEEEeCc-EEEEEEecCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENG-VLTIVVEKLP 143 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~G-vL~I~~pK~~ 143 (156)
..|.-.+.|| ++..+.|+-.+.+| +|+|+--+..
T Consensus 9 ~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 9 EAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred CeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 5677889999 79999999999865 9999997653
No 61
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=74.57 E-value=12 Score=24.51 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
..|.-.+.|| +++.+.|+-.++++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 5688899999 89999999999999999999887
No 62
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.91 E-value=10 Score=23.56 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=30.4
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEecCCC
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPP 144 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~~ 144 (156)
..|.-.+.|| +++.+.++-.+.++.|.|+..+...
T Consensus 7 ~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 7 DAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 4677889999 6999999999999999999888743
No 63
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.90 E-value=13 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=27.6
Q ss_pred EEEEEECCCCcccCceEEEEeCcEEEEEEecCC
Q 031602 111 LLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 111 f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
|.-++.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 44457898 999999999999999999999874
No 64
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=66.89 E-value=42 Score=24.99 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++++|++.+ +.++|+|. -|+..+.|.-| .++...+||.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp----------------------~G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGP----------------------KGELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECC----------------------CeEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 7889999999 79999842 25565554322 4556678888877754
No 65
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=66.18 E-value=43 Score=23.55 Aligned_cols=82 Identities=27% Similarity=0.182 Sum_probs=47.3
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccC
Q 031602 45 IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVS 124 (156)
Q Consensus 45 p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~ 124 (156)
..+.|...+ ...+++.. ..+.+++..++ +.|.|+. . ..+ ......+..... . ..-.-.+.||.....+
T Consensus 66 ~~V~I~~~~-~~~i~v~~---~~k~~~~~~~~-~~L~I~~--~-~~~--~~~~~~~~~~~~-~-~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSD-DDKIKVEY---NGKKPEISVEG-GTLTIKS--K-DRE--SFFFKGFNFNNS-D-NKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcC-CccEEEEE---cCcEEEEEEcC-CEEEEEE--e-ccc--ccccceEEEccc-C-CCcEEEEEECCCCcee
Confidence 344555533 23344444 21168888888 7999972 2 111 000111111111 1 3456689999999888
Q ss_pred ceEEEEeCcEEEEE
Q 031602 125 AISAKCENGVLTIV 138 (156)
Q Consensus 125 ~i~A~~~~GvL~I~ 138 (156)
+++....+|-++|.
T Consensus 134 ~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 134 KIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEeccccEEEE
Confidence 99999999977765
No 66
>PF14913 DPCD: DPCD protein family
Probab=66.06 E-value=55 Score=24.71 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=55.3
Q ss_pred cceeeEEECCCeEEEEE-EcCCCCCCCeEEEEecC-cEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCC--
Q 031602 44 SIPVDILDSPKDYIFFM-DVPGRPKSDIQVTVEDE-RTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPE-- 119 (156)
Q Consensus 44 ~p~~~i~e~~~~~~l~~-~lpG~~~edi~V~~~~~-~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~-- 119 (156)
.|-+-=.+|...|.-++ .|| +.++-.+|.++++ +.++|+ -. ...|.+.|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvR--Tt--------------------NKKYyKk~~IPDl~ 142 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVR--TT--------------------NKKYYKKFSIPDLD 142 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEE--Cc--------------------CccceeEecCCcHH
Confidence 45555667888888888 555 5677777777763 467776 11 145666788884
Q ss_pred ----CcccCceEEEEeCcEEEEEEecCC
Q 031602 120 ----DANVSAISAKCENGVLTIVVEKLP 143 (156)
Q Consensus 120 ----~v~~~~i~A~~~~GvL~I~~pK~~ 143 (156)
..+.+.++....|..|.|+..|..
T Consensus 143 R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhCCCcchhhceeeeecCeEEEEecCcH
Confidence 347778899999999999999863
No 67
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=65.35 E-value=7 Score=23.77 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=11.8
Q ss_pred CceEEEEeCcEEEEEEe
Q 031602 124 SAISAKCENGVLTIVVE 140 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~p 140 (156)
..|+|.|+||||.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999975433
No 68
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=65.21 E-value=17 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.2
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCcEEEEE
Q 031602 54 KDYIFFMDVP-GRPKSDIQVTVEDERTLVIR 83 (156)
Q Consensus 54 ~~~~l~~~lp-G~~~edi~V~~~~~~~L~I~ 83 (156)
..|.=.+.|| +++.++|+-.+..++.|+|.
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 4667788899 99999999999933799997
No 69
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=64.32 E-value=24 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=32.1
Q ss_pred ccceeeEEECCCeEEEEEEcCCC-----CCCCeEEEEecCcEEEEE
Q 031602 43 SSIPVDILDSPKDYIFFMDVPGR-----PKSDIQVTVEDERTLVIR 83 (156)
Q Consensus 43 ~~p~~~i~e~~~~~~l~~~lpG~-----~~edi~V~~~~~~~L~I~ 83 (156)
..|.+.|+++++.|.|.+--+.- +++...|.-++ +.|.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 47999999999999998866543 67777788777 688885
No 70
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=62.84 E-value=24 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=25.4
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCcEEEEE
Q 031602 54 KDYIFFMDVP-GRPKSDIQVTVEDERTLVIR 83 (156)
Q Consensus 54 ~~~~l~~~lp-G~~~edi~V~~~~~~~L~I~ 83 (156)
+.|.+.++|| .+++++.+..+.+ +.|.|+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~ 65 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFT 65 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEE
Confidence 6789999998 5599999999999 689997
No 71
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=61.67 E-value=62 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++++|++.+ +.++|+|. -|+..+.+. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp----------------------~G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGP----------------------KGEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECC----------------------CeEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6889999999 79999832 255555443 32 3555678888877754
No 72
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=61.39 E-value=52 Score=24.72 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++++|++.+ +.++|+|. .|+.++.|.=| . ..+....+||.|.|+-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp----------------------~G~L~~~~~~~-~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGK----------------------YGELTRSFRHL-P---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECC----------------------CceEEEEecCC-C---ceEEEEeCCCEEEEEeC
Confidence 7899999999 79999832 26666554322 1 34666678888777754
No 73
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=60.77 E-value=55 Score=24.15 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++|+|.+++ +.++|+|. -|..++.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp----------------------~G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGP----------------------KGELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcC----------------------CeEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6889999999 79999832 25565555 43 3455678887777754
No 74
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=57.65 E-value=25 Score=21.99 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.4
Q ss_pred eEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 110 KLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 110 ~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
...-+|.+|..+..+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3555788999999999999999998999886
No 75
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=56.13 E-value=67 Score=23.73 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++|+|.+.+ +.|+|+|. .|...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp----------------------~G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGP----------------------KGELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECC----------------------CEEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6899999999 79999842 25566555 433 445567887777644
No 76
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=55.76 E-value=40 Score=20.35 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=29.7
Q ss_pred eeeEE-ECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEE
Q 031602 46 PVDIL-DSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIR 83 (156)
Q Consensus 46 ~~~i~-e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~ 83 (156)
++.+. -....|.|++..+|+.+-.-.|.+..+....|+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~ 64 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVN 64 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEE
Confidence 34555 457899999999999998888888865677776
No 77
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=54.63 E-value=6 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.4
Q ss_pred CCCcccCceEEEEeCcEEEEEEecC
Q 031602 118 PEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 118 P~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
-+.+..+.--+.|.||||+|.++-.
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg~~ 90 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLGSV 90 (156)
T ss_pred HhhcCccccccccccceEEEEecCc
Confidence 3445455566889999999999843
No 78
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=52.93 E-value=38 Score=21.72 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=27.9
Q ss_pred ccccceEEEeeeeeCCeEEEEEECCCCcccCc-eEEEEeCcEE-EEEE
Q 031602 94 EEEGCKCIRLERRVPQKLLRKFKLPEDANVSA-ISAKCENGVL-TIVV 139 (156)
Q Consensus 94 ~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~-i~A~~~~GvL-~I~~ 139 (156)
-...+.|.+..... --|.|.|.+|+...+.. +.-+|.+|-+ .|+-
T Consensus 27 ~~~pG~y~~~g~~i-~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 27 PDRPGEYSRSGNRI-EIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp --STTEEEEETTEE-EEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCCCeEEEEECCEE-EEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 34455676666665 67999999999986666 8888888744 3543
No 79
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=52.50 E-value=62 Score=24.41 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=53.3
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEE-ECCCCcccC
Q 031602 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKF-KLPEDANVS 124 (156)
Q Consensus 46 ~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~-~LP~~v~~~ 124 (156)
.+.+-..++...+.+.|-|+..++|+|.+.. ..|-+..+ .. + + ..|.-.+ .|-..++++
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~---dl---q--G-----------K~y~~~vnnLlk~I~vE 135 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVH---DL---Q--G-----------KNYRMIVNNLLKPISVE 135 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecc-cceeeeee---ec---C--C-----------cceeeehhhhccccChh
Confidence 3567778889999999999999999999999 78888622 11 1 1 1222111 234667778
Q ss_pred ceEEEEeCcEEEEEEecC
Q 031602 125 AISAKCENGVLTIVVEKL 142 (156)
Q Consensus 125 ~i~A~~~~GvL~I~~pK~ 142 (156)
+-+-..+-....|.+.|.
T Consensus 136 ks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 136 KSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hcccccccceEEEeehhh
Confidence 766667777677777555
No 80
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=51.79 E-value=24 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.9
Q ss_pred EEEcC-CCCCCCeEEEEecCcEEEEEe
Q 031602 59 FMDVP-GRPKSDIQVTVEDERTLVIRS 84 (156)
Q Consensus 59 ~~~lp-G~~~edi~V~~~~~~~L~I~~ 84 (156)
+.-|| |++++.|.=.+..+++|+|+|
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~a 146 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEA 146 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEc
Confidence 45688 999999999999778999984
No 81
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=50.78 E-value=79 Score=21.66 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=29.4
Q ss_pred CeEEEEEECCCCc-ccCceEEEEeCcEEEEEEecCCCCCCCeEEEEec
Q 031602 109 QKLLRKFKLPEDA-NVSAISAKCENGVLTIVVEKLPPPPKPKTVEVAI 155 (156)
Q Consensus 109 ~~f~r~~~LP~~v-~~~~i~A~~~~GvL~I~~pK~~~~~~~~~I~I~~ 155 (156)
..|+.-|....++ +...++-.+++.+|-...|+. ..++|.|+.
T Consensus 44 ~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~----~~~~I~Vq~ 87 (113)
T cd01759 44 NTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV----GAEKITVQS 87 (113)
T ss_pred CEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE----EEEEEEEEe
Confidence 5677677777777 666788888888776555554 366777763
No 82
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=50.05 E-value=93 Score=23.33 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|++|+|++++ +.|+|+|. .|+.++. ||.. .-.+....++|.|.|+-+
T Consensus 12 P~~V~V~i~~-~~ItVkGp----------------------kG~Ls~~--~~~~--~~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGK----------------------RGTLTKD--LRHL--QLDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECC----------------------CcEEEEE--cCCC--CcEEEEEecCCEEEEEeC
Confidence 6899999999 79999842 2555443 3421 013555677788877744
No 83
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=49.29 E-value=38 Score=22.25 Aligned_cols=32 Identities=9% Similarity=0.302 Sum_probs=26.8
Q ss_pred CeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 109 QKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
..-.-+|+||.++....+...+...-|+|.+.
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 34555788999999999999999999999873
No 84
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=46.13 E-value=95 Score=22.96 Aligned_cols=44 Identities=18% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVE 140 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~p 140 (156)
|+.|+|.+++ +.|+|+|. + |+..+ .||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp--~--------------------G~l~~--~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGP--K--------------------GTLSR--KIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECC--C--------------------EEEEE--ECCC-----CeEEEEeCCEEEEEcC
Confidence 6789999999 79999832 2 44443 4554 3455668887777644
No 85
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=45.47 E-value=27 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.9
Q ss_pred CceEEEEeCcEEEEEEecC
Q 031602 124 SAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK~ 142 (156)
..+.+.+.+|||+|+++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3578999999999999754
No 86
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=44.49 E-value=22 Score=24.11 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.7
Q ss_pred eEEEEeCcEEEEEEecC
Q 031602 126 ISAKCENGVLTIVVEKL 142 (156)
Q Consensus 126 i~A~~~~GvL~I~~pK~ 142 (156)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999854
No 87
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=44.35 E-value=23 Score=23.95 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.1
Q ss_pred CceEEEEeCcEEEEEEec
Q 031602 124 SAISAKCENGVLTIVVEK 141 (156)
Q Consensus 124 ~~i~A~~~~GvL~I~~pK 141 (156)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 457788899999999984
No 88
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=43.07 E-value=25 Score=23.64 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.8
Q ss_pred ceEEEEeCcEEEEEEecC
Q 031602 125 AISAKCENGVLTIVVEKL 142 (156)
Q Consensus 125 ~i~A~~~~GvL~I~~pK~ 142 (156)
.+.+.+.+|||+|+++..
T Consensus 26 d~D~e~~~gVLti~f~~~ 43 (102)
T TIGR03421 26 DIDCERAGGVLTLTFENG 43 (102)
T ss_pred CeeeecCCCEEEEEECCC
Confidence 367888999999999843
No 89
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=42.66 E-value=47 Score=19.50 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=16.9
Q ss_pred CCCCCCCeEEEEecCcEEEEEeC
Q 031602 63 PGRPKSDIQVTVEDERTLVIRSN 85 (156)
Q Consensus 63 pG~~~edi~V~~~~~~~L~I~~~ 85 (156)
++++..+|+|.+.+ +.++++|.
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~ 33 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGE 33 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEE
T ss_pred cccCCCeEEEEEEC-CEEEEEee
Confidence 46777789999999 79999943
No 90
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=41.10 E-value=1.2e+02 Score=21.37 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=24.4
Q ss_pred CeEEEEEECCCCcccCce--EEEEeCcEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSAI--SAKCENGVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~i--~A~~~~GvL~I~~pK~ 142 (156)
....|++.+|..|..+.| ++-+.+ .|.+.+||.
T Consensus 63 ~~~~R~i~VPF~V~~d~i~V~Svls~-~~~~~ip~G 97 (125)
T PF11033_consen 63 EDAQRTISVPFTVKGDGIEVSSVLSE-KLSFDIPKG 97 (125)
T ss_pred ccceEEEEeeEEEcCCCEEEEEeecC-cEEEecCCC
Confidence 557899999999977775 444566 577877764
No 91
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=40.57 E-value=96 Score=22.16 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=27.1
Q ss_pred EEEEECCCCcccCceEEEEeCcEEEEEEecCCCCCCCeEEEEe
Q 031602 112 LRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPPKPKTVEVA 154 (156)
Q Consensus 112 ~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~~~~~~~~I~I~ 154 (156)
.-++.-|+.+ .+.++...+||.|.|...+.-...++-.|.|.
T Consensus 22 ~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~~~~~~~v~V~ 63 (181)
T PF10988_consen 22 SVEVEADENL-LDRIKVEVKDGTLKISYKKNISGSKPVKVRVT 63 (181)
T ss_dssp EEEEEEEHHH-HCCEEEEEETTEEEEEE-SCCTCTSTEEEEEE
T ss_pred EEEEEEChhh-cceEEEEEECCEEEEEECCCcCCCccEEEEEE
Confidence 3455556544 67788999999999999965333334455554
No 92
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.74 E-value=25 Score=29.80 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=52.6
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCc-
Q 031602 43 SSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDA- 121 (156)
Q Consensus 43 ~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v- 121 (156)
..|.+.+..+++...|.+..|-.+...+.+...+ +....+ .+.|.-+..+|--+
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~------------------------~~pyflrl~~p~~~~ 56 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS------------------------AGPYFLRLAGPGMVE 56 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc------------------------cchhHHhhcCcchhh
Confidence 3678889999999999999996666777766666 444443 23344455666555
Q ss_pred ccCceEEEE--eCcEEEEEEecCCC
Q 031602 122 NVSAISAKC--ENGVLTIVVEKLPP 144 (156)
Q Consensus 122 ~~~~i~A~~--~~GvL~I~~pK~~~ 144 (156)
+...-.|+| ++|...|++||.++
T Consensus 57 ~d~~~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 57 DDARPNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred hhccccCccccccceeEEeecCCCc
Confidence 333344544 68999999999754
No 93
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=35.48 E-value=25 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.1
Q ss_pred EEEEeCcEEEEEEecC
Q 031602 127 SAKCENGVLTIVVEKL 142 (156)
Q Consensus 127 ~A~~~~GvL~I~~pK~ 142 (156)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5678899999999754
No 94
>PRK14282 chaperone protein DnaJ; Provisional
Probab=34.07 E-value=2.2e+02 Score=23.42 Aligned_cols=29 Identities=3% Similarity=0.012 Sum_probs=17.7
Q ss_pred EEECCCCcccCceEEEEeCc-EEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENG-VLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~G-vL~I~~pK~ 142 (156)
.|+|.+.+--..+....-+| .|+|++|+.
T Consensus 283 ~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g 312 (369)
T PRK14282 283 TIDYLQAILGTTVEVPLPEGGTTMLKIPPG 312 (369)
T ss_pred EeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence 44444555555555554456 689999865
No 95
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=32.94 E-value=1.2e+02 Score=18.50 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=14.2
Q ss_pred CCCeEEEEecCcEEEEEe
Q 031602 67 KSDIQVTVEDERTLVIRS 84 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~ 84 (156)
|+.++|.+.+ ..+.+.|
T Consensus 2 P~gV~v~~~~-~~i~v~G 18 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKG 18 (77)
T ss_dssp STTCEEEEET-TEEEEES
T ss_pred CCcEEEEEeC-cEEEEEC
Confidence 5788999999 7899883
No 96
>PRK14298 chaperone protein DnaJ; Provisional
Probab=31.52 E-value=2.7e+02 Score=23.10 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=19.1
Q ss_pred EEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 112 LRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 112 ~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
...|+|.+.+.-..+...--+|.+.|++|..
T Consensus 270 ~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g 300 (377)
T PRK14298 270 EIPISFTQAALGADIMVPTLYGKVKMNIPPG 300 (377)
T ss_pred EEEeCHHHHhCCCeEEEecCCCCEEEEeCCC
Confidence 3345555566556666555567678888854
No 97
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=31.09 E-value=1.7e+02 Score=21.89 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=25.7
Q ss_pred CCCeEEEEecCcEEEEEeCcEEeccC-CccccceEEEe-eeeeCCeEEEEEECCCC
Q 031602 67 KSDIQVTVEDERTLVIRSNGKRKRED-GEEEGCKCIRL-ERRVPQKLLRKFKLPED 120 (156)
Q Consensus 67 ~edi~V~~~~~~~L~I~~~~~~~~~~-~~~~~~~~~~~-e~~~~~~f~r~~~LP~~ 120 (156)
+++++|. + +.|.|++. ++... ..-.++.+..+ ...| |.|+-++.+|..
T Consensus 31 ~~nv~v~--~-g~L~l~~~--~~~~~~~~~tsg~i~S~~~f~y-G~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--D-GGLALTLT--NDTYGEKPYACGEYRTRGFYGY-GRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--C-CeEEEEEe--CCcCCCCccccceEEECceEEe-eEEEEEEEcCCC
Confidence 5666554 6 57888743 22110 11223333332 2344 899999999853
No 98
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=30.35 E-value=94 Score=18.57 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.8
Q ss_pred EcCCCCC-CCeEEEEecCcEEEEE
Q 031602 61 DVPGRPK-SDIQVTVEDERTLVIR 83 (156)
Q Consensus 61 ~lpG~~~-edi~V~~~~~~~L~I~ 83 (156)
.-.||.. +.|+|.+.. +.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEEC-CEEEEe
Confidence 4468976 569999999 699986
No 99
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=29.83 E-value=2.1e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=20.1
Q ss_pred EECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 115 FKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 115 ~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
+.=|..|.+........+|-++++||+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 3567778777666666789999999974
No 100
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=29.53 E-value=2.8e+02 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCCC--cccCceEEEEeC--cEEEEEEecCCCCCCCeEEEEe
Q 031602 117 LPED--ANVSAISAKCEN--GVLTIVVEKLPPPPKPKTVEVA 154 (156)
Q Consensus 117 LP~~--v~~~~i~A~~~~--GvL~I~~pK~~~~~~~~~I~I~ 154 (156)
+|.. ||...+..+|++ |.|+|.+|-.+++..-..|.|.
T Consensus 716 ~P~~c~vd~~~~~f~y~~~~g~~~~~~~~~~~~~~~~~~~~~ 757 (758)
T PLN02355 716 RPRRVTVDSKEVEFRYEEGSGLVTFDLGVPEEELYLWNVTVE 757 (758)
T ss_pred CCcEEEECCeEeeeEEcCCCCeEEEEcCCCcccCceeEEEEe
Confidence 5654 466667777866 9999999987545556667664
No 101
>PRK10568 periplasmic protein; Provisional
Probab=28.68 E-value=1e+02 Score=23.23 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.0
Q ss_pred CCCCCCCeEEEEecCcEEEEEeC
Q 031602 63 PGRPKSDIQVTVEDERTLVIRSN 85 (156)
Q Consensus 63 pG~~~edi~V~~~~~~~L~I~~~ 85 (156)
++++..+|+|.+.+ +.++++|.
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~ 94 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGF 94 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEE
Confidence 66777889999999 69999954
No 102
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=28.17 E-value=2.5e+02 Score=21.87 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=35.3
Q ss_pred EEEE-EEcCCCCCCCeEEEEec-CcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCc
Q 031602 56 YIFF-MDVPGRPKSDIQVTVED-ERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENG 133 (156)
Q Consensus 56 ~~l~-~~lpG~~~edi~V~~~~-~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~G 133 (156)
+.|. -.|||+..+==.|.... .+.|..- .++.+..+.... .|..-|+++|...-|++.|.. +.||
T Consensus 10 ~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV----------~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y-~g~~ 76 (248)
T PF06977_consen 10 VVIEAKPLPGILDELSGLTYNPDTGTLFAV----------QDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITY-LGNG 76 (248)
T ss_dssp EEEEEEE-TT--S-EEEEEEETTTTEEEEE----------ETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE--STT
T ss_pred EEEeeeECCCccCCccccEEcCCCCeEEEE----------ECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEE-ECCC
Confidence 3443 47999988633345542 2566553 122333443332 378999999987779998865 5677
Q ss_pred EEEEE
Q 031602 134 VLTIV 138 (156)
Q Consensus 134 vL~I~ 138 (156)
.+.|+
T Consensus 77 ~~vl~ 81 (248)
T PF06977_consen 77 RYVLS 81 (248)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66553
No 103
>PRK14284 chaperone protein DnaJ; Provisional
Probab=27.50 E-value=2.7e+02 Score=23.15 Aligned_cols=31 Identities=6% Similarity=-0.087 Sum_probs=19.8
Q ss_pred EEEEECCCCcccCceEEE-Ee-CcEEEEEEecC
Q 031602 112 LRKFKLPEDANVSAISAK-CE-NGVLTIVVEKL 142 (156)
Q Consensus 112 ~r~~~LP~~v~~~~i~A~-~~-~GvL~I~~pK~ 142 (156)
...|+|.+.+.-..++.. +. +|.|+|++|..
T Consensus 283 ~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g 315 (391)
T PRK14284 283 ELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG 315 (391)
T ss_pred EEEecHHHHhCCCeEEEeecCCCcEEEEEECCc
Confidence 334555566666666664 33 48899999965
No 104
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=26.72 E-value=50 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.0
Q ss_pred eEEEEeCcEEEEEEecC
Q 031602 126 ISAKCENGVLTIVVEKL 142 (156)
Q Consensus 126 i~A~~~~GvL~I~~pK~ 142 (156)
+-+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 55778899999999865
No 105
>PRK14296 chaperone protein DnaJ; Provisional
Probab=24.58 E-value=3.8e+02 Score=22.17 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=17.2
Q ss_pred EEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
.|+|.+.+---.+.-.-=||-++|++|..
T Consensus 281 ~Isl~eAllG~~~~i~tldG~~~v~ip~~ 309 (372)
T PRK14296 281 NISYLDAILGNEIIIKTLDGDIKYKLPKS 309 (372)
T ss_pred ecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence 34444555555555554467688888854
No 106
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=23.16 E-value=79 Score=19.58 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=14.9
Q ss_pred CCCcccCceEEEEeCcEEEEEEec
Q 031602 118 PEDANVSAISAKCENGVLTIVVEK 141 (156)
Q Consensus 118 P~~v~~~~i~A~~~~GvL~I~~pK 141 (156)
|..+-...--..+++|+|.|.+.-
T Consensus 34 g~~l~~~~~~~~i~~g~L~i~v~~ 57 (89)
T PF05258_consen 34 GPELAQHTRPVSIKDGTLVIEVDS 57 (89)
T ss_pred CHHHHccEEEEEEECCEEEEEECC
Confidence 444433333345789999998763
No 107
>PRK14297 chaperone protein DnaJ; Provisional
Probab=22.92 E-value=4.4e+02 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=17.8
Q ss_pred EEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
.|+|.+.+....++...-+|.+.|.+|..
T Consensus 279 ~Isl~eAl~G~~~~i~~ldg~~~v~ip~g 307 (380)
T PRK14297 279 HISFAKAALGTEIKVPTVDGEVKYEVPAG 307 (380)
T ss_pred EeCHHHHhCCCcEEEEcCCCcEEEEECCC
Confidence 44454555555555555567778888854
No 108
>PRK14290 chaperone protein DnaJ; Provisional
Probab=22.14 E-value=4.5e+02 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=22.2
Q ss_pred EEEEEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 111 LLRKFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 111 f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
....|+|.+.+....+.-..-+|.++|.+|..
T Consensus 274 ~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g 305 (365)
T PRK14290 274 VDQKINFPQAALGGEIEIKLFREKYNLKIPEG 305 (365)
T ss_pred EEEEeCHHHHhCCCEEEEEcCCceEEEEECCc
Confidence 34456666666666666666778899999854
No 109
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=22.02 E-value=2.6e+02 Score=19.81 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=18.6
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCCeEEEEec
Q 031602 44 SIPVDILDSPKDYIFFMDVPGRPKSDIQVTVED 76 (156)
Q Consensus 44 ~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~ 76 (156)
.|.+.+...++.|.-.+-.|+-+ --|...+
T Consensus 26 ~~~lKilS~Dgtf~Ni~~~~~~~---aiIt~~G 55 (133)
T PF14869_consen 26 SNVLKILSDDGTFVNITMIPKSG---AIITGYG 55 (133)
T ss_pred cccEEEEcCCCcEEEEEEeCCCC---cEEEEeE
Confidence 45678888888777666655443 3344444
No 110
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=21.84 E-value=3.5e+02 Score=20.20 Aligned_cols=19 Identities=11% Similarity=0.358 Sum_probs=15.8
Q ss_pred CCCCCeEEEEecCcEEEEEe
Q 031602 65 RPKSDIQVTVEDERTLVIRS 84 (156)
Q Consensus 65 ~~~edi~V~~~~~~~L~I~~ 84 (156)
.-|++++|++++ +.++++|
T Consensus 10 ~~P~gV~V~i~~-~~v~vkG 28 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKG 28 (178)
T ss_pred ecCCCeEEEEec-cEEEEEC
Confidence 348999999998 7999983
No 111
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=21.73 E-value=80 Score=21.32 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=11.7
Q ss_pred eEEEEeCcEEEEEEe
Q 031602 126 ISAKCENGVLTIVVE 140 (156)
Q Consensus 126 i~A~~~~GvL~I~~p 140 (156)
+.+.+.+|||+|+++
T Consensus 30 ~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 30 IDVDLQGDILNLDTD 44 (103)
T ss_pred eeeeccCCEEEEEeC
Confidence 667788999998854
No 112
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.19 E-value=2.4e+02 Score=18.74 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.7
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEE
Q 031602 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIR 83 (156)
Q Consensus 46 ~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~ 83 (156)
-+++.+.+| .|....||.+ .|.|+.++ +.|.|.
T Consensus 25 g~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~ 57 (96)
T COG4004 25 GWTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVN 57 (96)
T ss_pred CeeEeeccc--EEEEecCCce--EEEEeccc-ceEEEe
Confidence 367788888 7778899975 58888888 789997
No 113
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.99 E-value=8.4 Score=24.01 Aligned_cols=11 Identities=64% Similarity=0.773 Sum_probs=9.6
Q ss_pred eEEEEeCcEEE
Q 031602 126 ISAKCENGVLT 136 (156)
Q Consensus 126 i~A~~~~GvL~ 136 (156)
|.|-|+||||.
T Consensus 7 IEaiYEnGVfK 17 (67)
T COG2880 7 IEAIYENGVLK 17 (67)
T ss_pred HHHHHhccccc
Confidence 67889999997
No 114
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=20.74 E-value=2.4e+02 Score=19.57 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred CeEEEEEECCCCcccCc--eEEEEeC--cEEEEEEecC
Q 031602 109 QKLLRKFKLPEDANVSA--ISAKCEN--GVLTIVVEKL 142 (156)
Q Consensus 109 ~~f~r~~~LP~~v~~~~--i~A~~~~--GvL~I~~pK~ 142 (156)
..|+.++.+|++-+... ..-.++| |.|.|++.+.
T Consensus 37 E~ytyti~~pegm~l~t~~~~K~I~N~~Gk~~isv~~~ 74 (116)
T PF12970_consen 37 ETYTYTIELPEGMKLVTPPMEKKIDNPVGKVSISVKPE 74 (116)
T ss_dssp EEEEEEEEE-TT-EE-S--S-EEEEETTEEEEEEEEEE
T ss_pred cceEEEEEcCCCCeeecCccceeccCCcceEEEEEEec
Confidence 45788999999876444 3344665 9999999877
No 115
>PRK14281 chaperone protein DnaJ; Provisional
Probab=20.47 E-value=5.1e+02 Score=21.62 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=18.3
Q ss_pred EEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
.|+|.+.+.-..+....=||.++|.+|..
T Consensus 293 ~Isl~eAl~G~~~~i~tldg~i~v~ip~g 321 (397)
T PRK14281 293 AVSYPDLVLGTKVEVPTLDGAVKLTIPAG 321 (397)
T ss_pred EecHHHHhcCCeEEeecCCccEEEEeCCc
Confidence 34455555555555554578788888854
No 116
>PRK14291 chaperone protein DnaJ; Provisional
Probab=20.25 E-value=3.9e+02 Score=22.12 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=17.7
Q ss_pred EEECCCCcccCceEEEEeCc-EEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENG-VLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~G-vL~I~~pK~ 142 (156)
.++|.+.+.-..+....-+| .|+|.+|..
T Consensus 282 ~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g 311 (382)
T PRK14291 282 NITVAEAVLGTELEVPLLDGKKEKVKIPPG 311 (382)
T ss_pred EeeHHHHhCCCEEEEecCCCCEEEEEECCc
Confidence 34444555555555554567 689999865
No 117
>PRK14301 chaperone protein DnaJ; Provisional
Probab=20.16 E-value=4.7e+02 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=19.0
Q ss_pred EEECCCCcccCceEEEEeCcEEEEEEecC
Q 031602 114 KFKLPEDANVSAISAKCENGVLTIVVEKL 142 (156)
Q Consensus 114 ~~~LP~~v~~~~i~A~~~~GvL~I~~pK~ 142 (156)
.|+|.+.+....+....-+|-++|.+|+.
T Consensus 271 ~Isl~eAl~G~~~~v~tldG~i~v~ip~g 299 (373)
T PRK14301 271 EISFVQAALGDRIEVPTLDDPVTLDIPKG 299 (373)
T ss_pred EecHHHHhCCCeEEEecCCccEEEEECCC
Confidence 44444556666666655577789999865
Done!