RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031602
(156 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 112 bits (282), Expect = 1e-32
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 13 NHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQV 72
L+ P + F + + +++ ++ +D ++P+ ++F D+PG K +++V
Sbjct: 14 ADLWADP--FDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKV 71
Query: 73 TVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCEN 132
VED LV+ G+R +E E++ K R+ER K +R+F+L EDA V + A EN
Sbjct: 72 EVEDGNVLVVS--GERTKEK-EDKNDKWHRVERSS-GKFVRRFRLLEDAKVEEVKAGLEN 127
Query: 133 GVLTIVVEKLPPPPKPKTVEVAIS 156
GVLT+ V K KP+ + IS
Sbjct: 128 GVLTVTVPKA-EVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 90.2 bits (225), Expect = 1e-24
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLER 105
VDI + ++ + D+PG S I+V ++ L IR G+RK E E + R+ER
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIR--GERKSES-STETERFSRIER 61
Query: 106 RVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLP 143
R R+F LP+ A+ I+A NGVL I + K P
Sbjct: 62 RY-GSFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 87.9 bits (218), Expect = 5e-23
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 5/135 (3%)
Query: 19 PETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDER 78
T + G +P+ I++ + +PG K DI +
Sbjct: 31 SSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-D 89
Query: 79 TLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIV 138
TL IR KR E + I E +++ R KLP SAK ENGVL+++
Sbjct: 90 TLEIR--AKRSPLM-ITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVI 146
Query: 139 VEKLPPPPKPKTVEV 153
+ K K + +
Sbjct: 147 LPKA-ESSIKKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 81.5 bits (202), Expect = 6e-21
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 29 SRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKR 88
+ + + + PVD+ + + D+ G K I+ V + L+I +R
Sbjct: 9 QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIE--AER 66
Query: 89 KREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANV-SAISAKCENGVLTIVVEKLPPPPK 147
+ + + L +R P+ + + +LP + + IS K ENGVLTI +
Sbjct: 67 EITEPGVK-----YLTQR-PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI-AGTSV 119
Query: 148 PK 149
K
Sbjct: 120 FK 121
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 61.9 bits (150), Expect = 6e-13
Identities = 18/125 (14%), Positives = 44/125 (35%), Gaps = 13/125 (10%)
Query: 30 RSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRK 89
P + ++ + +DV +++V V + + GK +
Sbjct: 49 LRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVH--GKHE 105
Query: 90 REDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAK-CENGVLTIVVEKLPPPPKP 148
E + ++ RK+++P D + I++ +GVLT+ +
Sbjct: 106 ERQDEH---------GFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE 156
Query: 149 KTVEV 153
+T+ +
Sbjct: 157 RTIPI 161
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 57.5 bits (139), Expect = 7e-12
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 47 VDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERR 106
+ P + +DV +I V V + + + + E+ +E R
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHA----RHEERPDEHGFIAR---- 54
Query: 107 VPQKLLRKFKLPEDANVSAISAK-CENGVLTIVVEKLPPPPKPKTVEVA 154
+ R+++LP + +A+++ GVL+I + A
Sbjct: 55 ---EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 56.4 bits (136), Expect = 2e-11
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 46 PVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLER 105
++ ++ F+DV D+ V V+++ + +GK +
Sbjct: 4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEI---HGKHNERQDD---------HG 51
Query: 106 RVPQKLLRKFKLPEDANVSAISAK-CENGVLTIVVEKLPPPPKPKTVEVAI 155
+ ++ R+++LP + + SA+S +G+LT K+P E AI
Sbjct: 52 YISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 51.7 bits (124), Expect = 9e-10
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 56 YIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKF 115
+ +DV +++V V + + GK + E + ++ RK+
Sbjct: 8 FSVNLDVKHFSPEELKVKVLG-DVIEVH--GKHEERQDE---------HGFISREFHRKY 55
Query: 116 KLPEDANVSAISAK-CENGVLTIVVEKLPPPPKPK 149
++P D + I++ +GVLT+ + P+
Sbjct: 56 RIPADVDPLTITSSMSSDGVLTVNGPR-KQVSGPE 89
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 51.2 bits (123), Expect = 1e-09
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 51 DSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQK 110
+ + +DV ++ V +D + I K ++E R
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKD-GVVEITG----KHAARQDEHGYISR-------C 51
Query: 111 LLRKFKLPEDANVSAISAK-CENGVLTIVVEKLPPPPKPK 149
RK+ LP + + +S+ G LT+ P PK
Sbjct: 52 FTRKYTLPPGVDPTQVSSSLSPEGTLTVEA------PMPK 85
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 51.8 bits (123), Expect = 1e-08
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 16 FDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDV---PGRPKSDIQV 72
I + EK S QE + + +++ P D++V
Sbjct: 193 KAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKV 252
Query: 73 TVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCEN 132
+ + V +G +E+ E ++ + F PE + S A+ +
Sbjct: 253 WAKGNKVYV---HGVTGKEEKTENASHSEH------REFYKAFVTPEVVDASKTQAEIVD 303
Query: 133 GVLTIVVEKLPPPPKPK 149
G++ + P K
Sbjct: 304 GLMVVEA------PLFK 314
Score = 47.5 bits (112), Expect = 3e-07
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 14/101 (13%)
Query: 51 DSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQK 110
D + + +V +I + + LV+R+ D +
Sbjct: 109 DGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMS------------ES 155
Query: 111 LLRKFKLPEDANVSAISAK-CENGVLTIVVEKLPPPPKPKT 150
+ R LP + + I A + VL I P K
Sbjct: 156 VGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.007
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 104 ERRVPQKLLRKFKL--PEDANVSAISAKCE 131
E++ +KL KL + A AI A E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.53
Identities = 29/168 (17%), Positives = 45/168 (26%), Gaps = 72/168 (42%)
Query: 1 MSRVIDDVAAAVNHLFDIPETMEKFTTPS------------RSPHQETNKSKGVSSIPVD 48
+ + AV ++ E F R ++ +S+P
Sbjct: 270 ATGHSQGLVTAV--AIAETDSWESFFVSVRKAITVLFFIGVRC-YEAY----PNTSLPPS 322
Query: 49 ILD----------SPKDYIFFM-DVPGRPKSDIQVTVE-------DERTLVIRS--NGKR 88
IL+ SP M + + +Q V + + I S NG +
Sbjct: 323 ILEDSLENNEGVPSP------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAK 375
Query: 89 KREDGEEEGCKCIRLERRV----PQKL------LRKFKLPEDANVSAI 126
V PQ L LRK K P + S I
Sbjct: 376 ----------------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 29.1 bits (66), Expect = 0.67
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 66 PKSDIQVTVEDERTLVIRSNGKRK 89
P +D + VED +V++ NGK +
Sbjct: 808 PVADEKAMVEDSTLVVVQVNGKVR 831
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 27.6 bits (62), Expect = 2.4
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 66 PKSDIQVTVEDERTLVIRSNGKRK 89
P+ D + +D + ++ NG
Sbjct: 805 PELDEKALEKDVVEVAVQVNGAVA 828
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 27.4 bits (61), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 125 AISAKCENGVLTIVVEKLPPP 145
A+SA+ + G I++EK P P
Sbjct: 142 AVSAR-DAGAKVILLEKEPIP 161
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid;
2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Length = 394
Score = 26.3 bits (57), Expect = 5.0
Identities = 13/71 (18%), Positives = 21/71 (29%)
Query: 25 FTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRS 84
TP+ + H+ G I D LD P + +D Q T +
Sbjct: 172 VLTPNGTWHEHGILESGTECIWQDGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTY 231
Query: 85 NGKRKREDGEE 95
G ++
Sbjct: 232 GGPALLPQLDK 242
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 26.2 bits (58), Expect = 6.4
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 125 AISAKCENGVLTIVVEKLPPP 145
AISA ++G I++EK P
Sbjct: 142 AISAT-DSGAKVILIEKEPVI 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.380
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,464,912
Number of extensions: 142896
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 23
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)