RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031602
         (156 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 78.7 bits (193), Expect = 6e-20
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 13  NHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQV 72
             L+  P   + F +   +     +++   ++  +D  ++P+ ++F  D+PG  K +++V
Sbjct: 13  ADLWADP--FDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKV 70

Query: 73  TVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCEN 132
            VED   LV+   G+R +E  ++          R   K +R+F+L EDA V  + A  EN
Sbjct: 71  EVEDGNVLVVS--GERTKEKEDKNDKWHRV--ERSSGKFVRRFRLLEDAKVEEVKAGLEN 126

Query: 133 GVLTIVVEKLPPP-PKPKTVEVA 154
           GVLT+ V K     P+ K ++++
Sbjct: 127 GVLTVTVPKAEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 72.4 bits (177), Expect = 7e-18
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 41  GVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKC 100
           G   +P+ I++  +       +PG  K DI +    +   +      ++      E  + 
Sbjct: 7   GKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRA----KRSPLMITESERI 62

Query: 101 IRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPPKPKTVEV 153
           I  E    +++ R  KLP        SAK ENGVL++++ K       K + +
Sbjct: 63  IYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK-AESSIKKGINI 114


>d1jhsa_ d.107.1.1 (A:) Ran-binding protein mog1p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 14/113 (12%)

Query: 12  VNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILD--SPKDY-----IFFMDVPG 64
            + L ++P+T   +    R   +  +      SI VD+L+     D          D+  
Sbjct: 24  ASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTE 83

Query: 65  RPKSDIQVTVEDER-------TLVIRSNGKRKREDGEEEGCKCIRLERRVPQK 110
              +     ++++        T ++     +  +    +         R+ Q 
Sbjct: 84  LNGTTKWEALQEDTVQQGTKFTGLVMEVANKWGKPDLAQTVVIGVALIRLTQF 136


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
          domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 51 DSPKDYIFFMDVPGRPKSDIQVTVED 76
               Y FF+       +DI+  +  
Sbjct: 40 TQLGMYRFFVQADSAITTDIKKVIAI 65


>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}
          Length = 128

 Score = 24.3 bits (52), Expect = 4.8
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 1   MSRVIDDVAAAVNHLFDIPETMEK--FTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIF 58
           M  +  D  +A      + +   +    T      +     K   +  V  L + + Y F
Sbjct: 56  MQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGE-----KDSVTFDVSKLAAGEKYGF 110

Query: 59  FMDVPG 64
           F   PG
Sbjct: 111 FCSFPG 116


>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 355

 Score = 24.3 bits (52), Expect = 8.3
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 25  FTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDV 62
             TP+ + H+      G   I  D LD P      ++ 
Sbjct: 134 VLTPNGTWHEHGILESGTECIWQDGLDIP--LTNCLEA 169


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,571
Number of extensions: 27332
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 14
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.1 bits)