BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031606
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D7STK2|GATC_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC
PE=3 SV=1
Length = 137
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 78/113 (69%), Gaps = 15/113 (13%)
Query: 1 MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
MGSR LLLLK + +F T S FS + N TR+ ST RS+L P
Sbjct: 1 MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45
Query: 61 PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RA ++
Sbjct: 46 PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTE 98
>sp|B9RRX2|GATC_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Ricinus communis GN=GATC
PE=3 SV=1
Length = 143
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 55/64 (85%)
Query: 52 TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
T SSL+PPDV RLA+TARISL +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RA
Sbjct: 43 ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102
Query: 112 SKRE 115
S+ E
Sbjct: 103 SEGE 106
>sp|B9INH0|GATC_POPTR Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Populus trichocarpa
GN=GATC PE=3 SV=1
Length = 141
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 70/117 (59%), Gaps = 19/117 (16%)
Query: 1 MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
MGSR +LLLKG +P H + N+ K S S R T S
Sbjct: 1 MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSK 113
SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW L VDLDSV+P++RA ++
Sbjct: 47 SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRADTE 102
>sp|Q7XZZ1|GATC_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Oryza sativa subsp.
japonica GN=GATC PE=2 SV=1
Length = 153
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 50/55 (90%)
Query: 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
LEPPD+PRLA ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG+
Sbjct: 58 LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGT 112
>sp|A2XK57|GATC_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Oryza sativa subsp.
indica GN=GATC PE=3 SV=1
Length = 153
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 50/55 (90%)
Query: 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGS 112
LEPPD+PRLA ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG+
Sbjct: 58 LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGT 112
>sp|F4JV80|GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=GATC PE=2 SV=1
Length = 155
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 1 MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYD--YNNR-TRNCSTTTTRSS 57
M +R LL + A+P + ++ I S + +YY N+R R+ S+ + S
Sbjct: 1 MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60
Query: 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
L+PPDV RLAQTARISLTP E+EE KIR+VIDWFGQLQ VD++SV+PA+RA
Sbjct: 61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRA 113
>sp|C5WR30|GATC_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATC
PE=3 SV=1
Length = 146
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 30 KMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89
+ P Y+ ++ + LEPPD+ RLA ARISL+P E E+F PKIRQV
Sbjct: 23 RRPAARTYWPRPLSSSSHVTPAAAGAGELEPPDLTRLANAARISLSPQEAEDFEPKIRQV 82
Query: 90 IDWFGQLQDVDLDSVDPALRAGS 112
+DWFGQLQ VDL+S++P+LRAG+
Sbjct: 83 VDWFGQLQAVDLESIEPSLRAGT 105
>sp|A9P2J1|GATC_PICSI Glutamyl-tRNA(Gln) amidotransferase subunit C,
chloroplastic/mitochondrial OS=Picea sitchensis GN=GATC
PE=2 SV=1
Length = 181
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 44 NRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS 103
+R++ + ++ E PDV +LA ARISLTP EVE++ PKI QVIDWFGQLQ V+L++
Sbjct: 70 SRSQPWRFYSVHNNFEAPDVVQLAAKARISLTPKEVEDYGPKIGQVIDWFGQLQGVNLEN 129
Query: 104 VDPALRAGSKREKN 117
V+PA+RA + + N
Sbjct: 130 VEPAIRADTDKLSN 143
>sp|Q5FND2|GATC_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Gluconobacter oxydans (strain 621H) GN=gatC PE=3 SV=1
Length = 95
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
SL+ V R+A+ ARI L P E+E + +IDW QL++VD+ VDP + G
Sbjct: 2 SLDAKTVTRIARLARIGLQPEEIETLGKDMGSIIDWVEQLKEVDVTGVDPMIGTG 56
>sp|B7K034|GATC_CYAP8 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Cyanothece sp. (strain PCC 8801) GN=gatC PE=3 SV=1
Length = 98
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ +TP E E FAP++ ++ +F QL ++D ++V P RA
Sbjct: 7 VEKIAHLARLEITPAEEEAFAPQLNSILQYFDQLSELDTENVPPMTRA 54
>sp|B0BZ26|GATC_ACAM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Acaryochloris marina (strain MBIC 11017) GN=gatC PE=3
SV=1
Length = 96
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
LE +V ++A AR+SLT E E+F ++ ++D+F QL ++D+ V+P RA
Sbjct: 2 LERAEVDKVAHLARLSLTDAESEQFTTQLGDILDYFEQLSELDVAEVEPTTRA 54
>sp|Q2ND76|GATC_ERYLH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Erythrobacter litoralis (strain HTCC2594) GN=gatC
PE=3 SV=1
Length = 100
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
S++ V ++A ARI +T E+E+ AP++ ++DW QL +VD V+P
Sbjct: 2 SVDKETVAKIASLARIKMTDAELEKMAPELSNILDWVEQLGEVDTSDVEP 51
>sp|B1X0Z4|GATC_CYAA5 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Cyanothece sp. (strain ATCC 51142) GN=gatC PE=3 SV=1
Length = 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ +T E E+FA ++ ++D+F QL ++D ++V P RA
Sbjct: 7 VQKIAHLARLDITSEEEEKFADQLSDILDYFEQLSELDTENVPPTTRA 54
>sp|Q55450|GATC_SYNY3 Glutamyl-tRNA(Gln) amidotransferase subunit C OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=gatC PE=3 SV=1
Length = 104
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
L+ V ++A AR+ +TP E +FA ++ ++D+F QL ++ + V+P RA
Sbjct: 2 LDQSQVQKIAHLARLEITPEEESQFASQLSSILDYFDQLNELPTEGVEPTTRA 54
>sp|B5YEC9|GATC_DICT6 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM
3960 / H-6-12) GN=gatC PE=3 SV=1
Length = 100
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+ + A AR+ LTP E E FA +++ ++D+F +LQ++D +V+P
Sbjct: 10 LKKTAHLARLHLTPEEEELFAKQLQNILDYFKKLQELDTSNVEP 53
>sp|B2J1S6|GATC_NOSP7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=gatC PE=3 SV=1
Length = 97
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ LTP E E+F ++ ++D+ QL ++D+ +V P RA
Sbjct: 7 VHKVANLARLELTPEEEEQFTTQLGSILDYIQQLDELDVSNVPPTTRA 54
>sp|A9HRJ1|GATC_GLUDA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
DSM 5601 / PAl5) GN=gatC PE=3 SV=1
Length = 95
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
SL+P V R+A+ ARI + ++ ++ ++ W QL +VD+D V+P + G
Sbjct: 2 SLDPATVRRIARLARIGIDESDLHALQGELNGILGWIEQLNEVDIDGVEPMVGTG 56
>sp|Q12VH0|GATC_METBU Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Methanococcoides burtonii (strain DSM 6242) GN=gatC
PE=3 SV=1
Length = 93
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+V + ARI + E E++A K+ V+D+FGQL +VD + V+P
Sbjct: 6 EVEHVGWLARIEIGAAEAEDYAVKLSSVLDYFGQLDEVDTEGVEP 50
>sp|B8E2U4|GATC_DICTD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724)
GN=gatC PE=3 SV=1
Length = 100
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+ + A AR+ LTP E E +A +++ ++D+F +LQ+VD +++P
Sbjct: 10 LKKTAHLARLYLTPEEEELYAKQLQDILDYFKKLQEVDTSNIEP 53
>sp|Q3M691|GATC_ANAVT Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=gatC PE=3 SV=1
Length = 96
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA----GSKREKNT 118
V ++A AR+ LTP E E+F ++ ++D+ QL ++D+ +V P RA RE N
Sbjct: 7 VRKVALLARLELTPQEEEQFTTQLGSILDYVEQLNELDVSNVPPTARAIDVSNITREDNL 66
Query: 119 LCYYPR 124
Y R
Sbjct: 67 QPYADR 72
>sp|P58527|GATC_NOSS1 Glutamyl-tRNA(Gln) amidotransferase subunit C OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=gatC PE=3 SV=1
Length = 96
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA----GSKREKNT 118
V ++A AR+ LTP E E+F ++ ++D+ QL ++D+ +V P RA RE N
Sbjct: 7 VRKVALLARLELTPEEEEQFTTQLGSILDYVEQLNELDVSNVPPTARAIDVSNITREDNL 66
Query: 119 LCYYPR 124
Y R
Sbjct: 67 QPYADR 72
>sp|A5V3V1|GATC_SPHWW Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
10273) GN=gatC PE=3 SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
S++ V ++A ARI++T +VE P++ ++ W QL +VD D V P
Sbjct: 2 SVDAATVRKIASLARIAVTDGDVEAMVPELNNILGWIEQLGEVDTDGVAP 51
>sp|Q1DCA4|GATC_MYXXD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Myxococcus xanthus (strain DK 1622) GN=gatC PE=3 SV=1
Length = 95
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 66 LAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+A AR+SLTP E + F ++ V+D QLQ +D+++V+P
Sbjct: 11 VATLARLSLTPEEEQRFTTQLSAVLDAVEQLQSLDVEAVEP 51
>sp|A2C068|GATC_PROM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain NATL1A) GN=gatC PE=3
SV=1
Length = 95
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
DV ++AQ AR+ L ++E + ++ +++ + QLQ++D +++ P RA
Sbjct: 8 DVRKVAQLARLELPEDQIETYTEQLEEILSYVDQLQEIDTENIPPTTRA 56
>sp|B1XNN1|GATC_SYNP2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=gatC PE=3 SV=1
Length = 97
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ LTP E + ++ ++D+ QL ++D D+V+P RA
Sbjct: 7 VRKVAHLARLELTPEEEQRLPSQLSAILDYVEQLSELDTDNVEPTTRA 54
>sp|A8G2P3|GATC_PROM2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain MIT 9215) GN=gatC
PE=3 SV=1
Length = 97
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
S + +V ++AQ AR+ L +E+ A ++ +++D+ QL+ +D D+V RA
Sbjct: 2 SRINKEEVKKVAQLARLELNINEINNHAEQLEKILDYIRQLEKIDTDNVPCTTRA 56
>sp|B7KKZ9|GATC_CYAP7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Cyanothece sp. (strain PCC 7424) GN=gatC PE=3 SV=1
Length = 98
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ +TP + E+F ++ ++++F QL ++D V P RA
Sbjct: 7 VKKIAHLARLEITPEQEEQFTGQLSSILEYFDQLSELDTTDVPPTTRA 54
>sp|B0K3S2|GATC_THEPX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Thermoanaerobacter sp. (strain X514) GN=gatC PE=3
SV=1
Length = 95
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+V +A+ AR+ + E+EEF ++ ++ID+ +L ++D ++V+P
Sbjct: 7 EVEHVAKLARLKFSQEEIEEFTVQLSKIIDYVNKLNELDTENVEP 51
>sp|B0KBN5|GATC_THEP3 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=gatC PE=3 SV=1
Length = 95
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+V +A+ AR+ + E+EEF ++ ++ID+ +L ++D ++V+P
Sbjct: 7 EVEHVAKLARLKFSQEEIEEFTVQLSKIIDYVNKLNELDTENVEP 51
>sp|Q2IH93|GATC_ANADE Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gatC
PE=3 SV=1
Length = 97
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP---ALRAGS 112
+L +V R+AQ AR+ L+ E FA ++ ++D QL+++D+ +V+P AL AG
Sbjct: 2 ALSLEEVRRIAQLARLRLSEEEERTFAGQLSAILDHVRQLEELDVTAVEPMTHALAAGE 60
>sp|Q46HD8|GATC_PROMT Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain NATL2A) GN=gatC PE=3
SV=1
Length = 95
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
DV ++AQ AR+ L ++E + ++ +++ + QLQ++D ++ P RA
Sbjct: 8 DVRKVAQLARLELPEDQIETYTEQLEEILSYVDQLQEIDTKNIPPTTRA 56
>sp|B0JVY2|GATC_MICAN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Microcystis aeruginosa (strain NIES-843) GN=gatC PE=3
SV=1
Length = 98
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ + E E+FA ++ ++D+F QL ++D ++V P RA
Sbjct: 7 VEKIAHLARLEINSGEEEQFALQLSGILDYFEQLSELDTENVLPTTRA 54
>sp|B2A5W6|GATC_NATTJ Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=gatC PE=3 SV=1
Length = 95
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGSKR 114
+V +A+ ++ L EVE F K+ Q+++W +L ++DL+ ++P A +R
Sbjct: 7 EVLHVAKLGQLDLDQEEVEMFQDKLSQILEWQEKLDELDLEGLEPTAHALERR 59
>sp|A5GW52|GATC_SYNR3 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Synechococcus sp. (strain RCC307) GN=gatC PE=3 SV=1
Length = 97
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
DV ++AQ AR+ L + F P++ +++D+ QL+ +D + + P RA
Sbjct: 8 DVRKVAQLARLDLPDDSIATFTPQLERILDFVAQLEAIDTEGLPPTTRA 56
>sp|C4LJJ2|GATC_CORK4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Corynebacterium kroppenstedtii (strain DSM 44385 /
CCUG 35717) GN=gatC PE=3 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALR----AG 111
SS+ +V LA+ +R+SLT E++EFA +I +I+ ++ +VD + V+P AG
Sbjct: 2 SSISRDEVAHLARLSRLSLTDDELDEFADQIDGIIEHVQKVSNVDTEGVEPMSHPSDLAG 61
Query: 112 SKREKNTLCYYPRICA 127
RE +P + A
Sbjct: 62 VMREDEV---HPTLTA 74
>sp|A1UT21|GATC_BARBK Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
GN=gatC PE=3 SV=1
Length = 95
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPAL 108
S+ + R+A ARI++ +E E K ++D+ QL ++D+ VDP +
Sbjct: 2 SVNDKTIKRIAHLARIAIHDNETERITKKFNAILDFAKQLDEIDVTGVDPLI 53
>sp|B8HU22|GATC_CYAP4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatC
PE=3 SV=1
Length = 97
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
V ++A AR+ L+ EV +F ++ ++D+F QL+++++ V P RA
Sbjct: 7 VKKVAHLARLELSGEEVAQFTTQLGSILDYFQQLEELNVTDVPPTTRA 54
>sp|A7NR21|GATC_ROSCS Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
GN=gatC PE=3 SV=1
Length = 98
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
DV +A+ AR+ L+P E+E ++ +++D F LQ +D+ +V P
Sbjct: 7 DVEHVARLARLRLSPDELEHMRDQLSKILDHFQMLQQIDVSAVPP 51
>sp|B1HTW8|GATC_LYSSC Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Lysinibacillus sphaericus (strain C3-41) GN=gatC PE=3
SV=1
Length = 95
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+ L +V +A AR+++T E E+FA ++ ++ D+ QL ++D +V+P
Sbjct: 2 AKLTKEEVKHVANLARLAITEEEAEKFAEQLGKITDFAEQLNELDTANVEP 52
>sp|Q0W278|GATC_UNCMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Uncultured methanogenic archaeon RC-I GN=gatC PE=3
SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
DV + A I L+P E FA + ++D+F +L +V+ D V+P
Sbjct: 6 DVEHIGSLACIDLSPEETGLFAKQFNSILDYFRELDEVNTDGVEP 50
>sp|Q8NR18|GATC_CORGL Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM
20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=gatC PE=3
SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
V LA+ +R++LT E+E+FA +I ++ + +Q+VD V+P
Sbjct: 9 VAHLAKLSRLALTEEELEQFAGQIDDIVGYVSAVQNVDAAGVEP 52
>sp|A4QDK7|GATC_CORGB Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Corynebacterium glutamicum (strain R) GN=gatC PE=3
SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
V LA+ +R++LT E+E+FA +I ++ + +Q+VD V+P
Sbjct: 9 VAHLAKLSRLALTEEELEQFAGQIDDIVGYVSAVQNVDAAGVEP 52
>sp|Q7VDV3|GATC_PROMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=gatC PE=3 SV=1
Length = 97
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
DV ++++ AR+ ++ VE +A ++ +++++ QL+ +D ++ P RA
Sbjct: 8 DVRKVSKLARLEISEEHVETYANQLEEILEYIAQLEKIDTKNIPPTTRA 56
>sp|B6IN24|GATC_RHOCS Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=gatC PE=3 SV=1
Length = 95
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
SL+ V ++A ARI + E E A ++ ++ W QL +VD D V P
Sbjct: 2 SLDKATVAKIAHLARIRVPEEEQEHLAQELNGILGWVEQLGEVDTDGVQP 51
>sp|A8FAR9|GATC_BACP2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Bacillus pumilus (strain SAFR-032) GN=gatC PE=3 SV=1
Length = 96
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+R S+E +V +A AR+++T E E F ++ +I + QL +VD ++V+P
Sbjct: 2 SRISIE--EVKHVAHLARLAITEEEAEMFTEQLDSIISFAEQLNEVDTENVEP 52
>sp|A5USE7|GATC_ROSS1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Roseiflexus sp. (strain RS-1) GN=gatC PE=3 SV=1
Length = 97
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
DV +A+ AR+ L+P E+E+ ++ ++D F LQ +D+ +V P
Sbjct: 7 DVEHVARLARLRLSPAELEKMRDQLSNILDHFQMLQQIDVSAVPP 51
>sp|A2BP33|GATC_PROMS Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain AS9601) GN=gatC PE=3
SV=1
Length = 97
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
+V ++A AR+ L +E+ A ++ +++D+ QL+ +D D V RA
Sbjct: 8 EVNKVAHLARLELNENEINNHAEQLEKILDYIRQLEKIDTDDVPCTTRA 56
>sp|A7HIH1|GATC_ANADF Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Anaeromyxobacter sp. (strain Fw109-5) GN=gatC PE=3
SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+V R+A AR+ L+P E FA ++ ++D QL ++D+ V+P
Sbjct: 7 EVRRIAALARLRLSPEEERTFAGQLSAILDHVAQLAELDVSGVEP 51
>sp|A3PAV5|GATC_PROM0 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Prochlorococcus marinus (strain MIT 9301) GN=gatC
PE=3 SV=1
Length = 97
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
+V ++A AR+ L +E+ A ++ +++D+ QL+ +D D V RA
Sbjct: 8 EVNKVANLARLELNENEINNHAEQLEKILDYIRQLEKIDTDDVPCTTRA 56
>sp|A7Z266|GATC_BACA2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Bacillus amyloliquefaciens (strain FZB42) GN=gatC
PE=3 SV=1
Length = 96
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 54 TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
+R S+E +V +A AR+++T E E F ++ +I + +L +VD D+V+P
Sbjct: 2 SRISIE--EVKHVAHLARLAITDEEAEMFTEQLDSIISFAEELNEVDTDNVEP 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,373,632
Number of Sequences: 539616
Number of extensions: 2264932
Number of successful extensions: 5832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5540
Number of HSP's gapped (non-prelim): 291
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)