BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031607
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L+SK
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GADVN K+ GRT LHYAA +G +IV+LLIS+GA +N+ D
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ IV++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GRT LHYAA +G +IV+LLIS+GA +N+KD
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+SKGADVN + GRT L A G +IV+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D T LH+AA GHPE+VE+LL + VNA D +GW P+H AA G++ IVE+L
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GADVN ++ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G P+H AA IG+ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA G L+IVE+L+ GA +N++D
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ D T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+L
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
L GADVN ++ G+TA + G + E+L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
AA G V +L++ GADVN +D G T LH AA G +IVE+L+ GA +N++D
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 147 CW 148
W
Sbjct: 80 GW 81
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L+SK
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GADVN K+ GRT LH+AA G ++V+LLIS+GA +N+ D
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ +V++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GRT LH+AA G ++V+LLIS+GA +N+KD
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+SKGADVN + GRT L A G ++V+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA +G L+IVE+L+ GA +N+KDK +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
L GADVN ++ G+T A +G I E+L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA +G L+IVE+L+ GA +N+KDK +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
L GADVN ++ G+T A G I E+L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA +G L+IVE+L+ GA +N+KDK +
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 114
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
L GADVN ++ G+TA + G + E+L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++LLSK
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GAD N K+ GRT LHYAA G +IV+LL+S+GA N+ D
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ NA D +G P+H AA G+ IV++LLSKGAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GRT LHYAA G +IV+LL+S+GA N+KD
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
LSKGAD N + GRT L A G +IV+LL +G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH+AA+ GH E+VE+LL + VNAVD G P+H AAS+G++ IVE+LL GA
Sbjct: 36 RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
DVN K+ G T L+ AA G L+IVE+L+ GA +N++DK
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ AN A D G P+H AA++G++ IVE+LL GADVN +
Sbjct: 9 AARAGQDDEVRILMANGADAN---AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AAS G L+IVE+L+ GA +N+KD
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AAS GH E+VE+LL VNA D G P++ AA G++ IVE+LL GAD
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 127 VNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
+ RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
GADVN K+ GRT LH AA G L++V+LL+ GA +N+KDK
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
L GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AAS GH E+VE+LL ++ VNA D G P+H AA+ G++ IVE+LL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
GADVN ++ G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G+ P+H AAS G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA+ G L+IVE+L+ GA +N+ D
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA D +G P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAAATGHLEIVEVLL---KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN K+D G T LH AA++G L+IVE+L+ GA +N++DK
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA G L+IVE+L+ GA +N+KD
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D+ G P+H AA+ G++ IVE+LL GAD
Sbjct: 82 TPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D+ T LH+AA+ GH E+VE+LL VNA D+ G + + GN + E+L
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+ + GH E++E+LL + A VNA D+ GW P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL VNA+D +G+ P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H + G++ I+E+LL ADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA +G L+IVE+L+ GA +N+ D +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA+D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA +G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA +G L+IVE+L+ GA +N+ D
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA G L+IVE+L+ GA +N+ D
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNAVD G P+H AA +G++ IVE+LL GAD
Sbjct: 82 TPLHLAALIGHLEIVEVLL---KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D +T LH+AA GH E+VE+LL + VNA D+ G P+H AA G++ IVE+L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GADVN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA G L+IVE+L+ GA +N+ D +
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF 114
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G+ P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154
G T LH AA +G L+IVE+L+ GA +N+ D H P
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS----HGFTP 116
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G+ P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAARRGHLEIVEVLL---KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA G L+IVE+L+ GA +N+ D
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNAVD G P+H AA +G++ IVE+LL GAD
Sbjct: 82 TPLHLAALIGHLEIVEVLL---KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL GA
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
DVN K+ G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+ G T LH AA G L+IVE+L+ GA +N+KD
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D EG+ P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAADNGHLEIVEVLL---KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + V+A D G+ P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAYSGHLEIVEVLL---KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G+L+IVE+L+ GA +N++DK
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LL AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GA
Sbjct: 16 RKLLE-AARAGQDDEVRILMA---NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
DV+ + G T LH AA G L+IVE+L+ GA +N+ D
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA+D +G P+H AA G + IVE+LL GAD
Sbjct: 82 TPLHLAAYWGHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
D T LH+AA G+ E+VE+LL + VNA D+ G + GN + E+L
Sbjct: 112 DGMTPLHLAAKWGYLEIVEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + V+A D G+ P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNAVD G P+H AA G++ IVE+LL GADV+ +
Sbjct: 21 AARAGQDDEVRILIA---NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T LH AA G L+IVE+L+ GA +N+ D
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 107 VNLKNDGGRTALHYAASKG 125
VN ++ G+TA + G
Sbjct: 139 VNAQDKFGKTAFDISIDNG 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNAVD G P+ AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G T L AA G L+IVE+L+ GA +N+ D
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T L +AA GH E+VE+LL ++ VNA D EG P+H AA G++ IVE+LL GAD
Sbjct: 82 TPLRLAALFGHLEIVEVLL---KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N+ D A
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLL---KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
KGA VN N G T LHYAASK +I +L+ GA ++KD
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 137 GAKINSKDK 145
GA++N+ ++
Sbjct: 96 GAQVNAVNQ 104
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
+ T +H AA+ G+ +++ ILL S N+ D EG P+H A V ++L+S+G
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQ---DTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIV 130
A + ++N +T L A KG L ++
Sbjct: 196 ASIYIENKEEKTPLQVA--KGGLGLI 219
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
RTALH+A S G +IVE L+ G +N KD A W
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
KGA VN N G T LHYAASK +I +L+ GA ++KD
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 137 GAKINSKDK 145
GA++N+ ++
Sbjct: 97 GAQVNAVNQ 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
+ T +H AA+ G+ +++ ILL S N+ D EG P+H A V ++L+S+G
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQ---DTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIV 130
A + ++N +T L A KG L ++
Sbjct: 197 ASIYIENKEEKTPLQVA--KGGLGLI 220
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
RTALH+A S G +IVE L+ G +N KD A W
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 75
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++LLS+
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLS--QGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GAD N K+ G+T LH AA G ++V+LL+S+GA N+ D
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ VNA D +G P+H AA G+ +V++LLS+GAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
G+T LH AA G ++V+LL+S+GA N+KD
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLS--QGADP-NAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
LS+GAD N + GRT L A G ++V+LL +G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ +VE+LL GAD
Sbjct: 49 TPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G T LH AA+ G L+IVE+L+ GA +N++DK
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA +G L++VE+L+ GA +N+ D +
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EVVE+LL ++ VNA D G+ P+H AA+IG++ IVE+LL GAD
Sbjct: 82 TPLHLAADRGHLEVVEVLL---KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
KGA VN N G T LHYAASK +I +L+ GA ++KD
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 137 GAKINSKDK 145
GA +N+ ++
Sbjct: 96 GAHVNAVNQ 104
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N + T LH AAS E+ +LL E +A D +H AA+ GN+ +V +LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLL---EGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
A N+++ G T LH A + ++ + L+++GA I ++K
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
D T +H AA+ G+ ++V ILL S N+ D EG P+H A V + L+++G
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQ---DTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
A + ++N +T L A KG L ++ ++ G
Sbjct: 196 ASIYIENKEEKTPLQVA--KGGLGLILKRLAEG 226
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
RTALH+A S G +IVE L+ G +N KD A W
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
+ RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
G P+H AA G++ +V++LL GADVN K+ GRT LH AA G L++V+LL+ GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDK 145
N+KDK
Sbjct: 62 NAKDK 66
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGA 105
L GA
Sbjct: 88 LEAGA 92
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
KGA VN N G T LHYAASK +I +L+ GA ++KD
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 137 GAKINSKDK 145
GA +N+ ++
Sbjct: 96 GAHVNAVNQ 104
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N + T LH AAS E+ +LL E +A D +H AA+ GN+ +V +LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLL---EGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
A N+++ G T LH A + ++ + L+++GA I ++K
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
D T +H AA+ G+ ++V ILL S N+ D EG P+H A V + L+++G
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQ---DTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
A + ++N +T L A KG L ++ ++ G
Sbjct: 196 ASIYIENKEEKTPLQVA--KGGLGLILKRLAEG 226
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
RTALH+A S G +IVE L+ G +N KD A W
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA+DE+G P+H AA +G++ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
GADVN ++ G+TA + G + E+L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D+ T LH+AA+ G E+VE+LL ++ VNA D G P+H AA G++ IVE+LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLL---KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
GADVN + G T LH AA G L+IVE+L+ GA +N++D
Sbjct: 93 KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA+ G + V IL++ + VNA D+ G P+H AA+ G + IVE+LL GADVN +
Sbjct: 13 AAAAGQDDEVRILMA---NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
G T LH AA G L+IVE+L+ GA +N+ D+A W
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW 106
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D GW P+H AA G + IVE+LL GAD
Sbjct: 74 TPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G TA + ++G + E+L
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN ++
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
GRT LH AA+ G L+IVE+L+ GA +N++DK
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
GRT LH AA+ G L+IVE+L+ GA +N++DK
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
GRT LH AA+ G L+IVE+L+ GA +N++DK
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH+AA GH E+LL S + VD P+H AAS G+ IVE+LL GADVN
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
K+ TALH+A ++VELLI GA ++++ K C
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ D G +P+H AA G+ + E+LL G + +
Sbjct: 9 AARAGQDDEVRILMA----NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
RT LH AAS+G IVE+L+ GA +N+KD
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ G T LH AA G L+IVE+L+ GA +N++DK
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 42 NDDDR---TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N +DR T LH+AA H E+VE+LL + VNA D +G P+H AA G++ IVE
Sbjct: 41 NANDRKGNTPLHLAADYDHLEIVEVLL---KHGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
+LL GADVN ++ G+TA + G + E+L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D T LH AA GH E V+ LLS VNA ++G P+H AA G+ IV++LL+K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
GADVN ++ G T H A G +IV+LL ++GA +N++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
++G P+H+AA G+ V+ LLSKGADVN ++ G T LH AA G +IV+LL+++GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 139 KINSKDK 145
+N++ K
Sbjct: 67 DVNARSK 73
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ D T LH+AA GH E+V++LL+ VNA ++G P H A G+ IV++L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 101 LSKGADVNLK 110
+KGADVN +
Sbjct: 95 DAKGADVNAR 104
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ D+N + G T LH A K W ++ + LI GA + KDK
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 54 SCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL---K 110
+C E ++ + +++ D++G P+H + S I LLSK +VNL
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAK 139
+D G T H A S G L++V+ L R K
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINS 142
P+H A V+ LL + L+ D GR LH++ S +I L+S+ +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 143 KD 144
D
Sbjct: 65 DD 66
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ D+N + G T LH A K W ++ + LI GA + KDK
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 54 SCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL---K 110
+C E ++ + +++ D++G P+H + S I LLSK +VNL
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAK 139
+D G T H A S G L++V+ L R K
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINS 142
P+H A V+ LL + L+ D GR LH++ S +I L+S+ +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 143 KD 144
D
Sbjct: 65 DD 66
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ D+N + G T LH A K W ++ + LI GA + KDK
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 54 SCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL---K 110
+C E ++ + +++ D++G P+H + S I LLSK +VNL
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAK 139
+D G T H A S G L++V+ L R K
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKINS 142
P+H A V+ LL + L+ D GR LH++ S +I L+S+ +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 143 KD 144
D
Sbjct: 65 DD 66
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL + + VNA D G P+H AA +G++ IVE+LL GADVN
Sbjct: 21 AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
+ GRT LH AA L+IVE+L+ GA +N++DK
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL ++ VNA G P+H AA ++ IVE+LL GA
Sbjct: 48 HTPLHLAAMLGHLEIVEVLL---KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
DVN ++ G+TA + G + E+L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA DE G P++ A + G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
G T LH AA G L+I E+L+ GA +N++DK
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T L++A + GH E+VE+LL ++ VNAVD G+ P+H AA IG++ I E+LL GAD
Sbjct: 49 TPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EVV+ LLS + VN D+ GW P+ A +V +V++LLSKG+D
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLIS 135
+N++++ LH+AA G + I E+L++
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D RT L AA H E V+ L+ ++ +V+ D EG +H AA G+ +V+ LL
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
S G DVN ++DGG T + +A + +V+LL+S+G+ IN +D
Sbjct: 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+ + R+ LH AA GH ++ +L V AN+ + E+ P+ AA ++ V+ L
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHML--VQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACW 148
+ GA V+ K+ G T LH AA KG ++V+ L+S G +N +D W
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R++++ LH AA G ++ EILL+ ++AV+ G +P+H AA V +
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 101 LSKGADVNLKNDGGRTALHYAA--SKGW 126
LS+ +DV LKN G T L A+ S+ W
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVW 224
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
G T LH A G L+IVE+L+ GA +N++DK
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA H E+VE+LL ++ VNA+D G P+H A G++ IVE+LL GAD
Sbjct: 49 TPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N T LH+ A GH V ++L+ + +V+A G+ P+H A+ GN+ +V+ LL
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI---KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
ADVN K G + LH AA +G IV LL+ GA N
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+V +LLS + N+ N + G P+H A G+V + ++L+ G
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGN---KSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--LHSIA 153
V+ G T LH A+ G +K+V+ L+ A +N+K K + LH A
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 352
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+ DD+T LH AA GH +V++LL + + N+ G P+H AA G+V V L
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L K A G T LH AA G +++ ELL+ R A N+ K
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EV + LL ++ VNA ++ P+H AA IG+ +V++LL A+
Sbjct: 49 TPLHMAARAGHTEVAKYLL---QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
NL G T LH AA +G ++ V L+ + A +AC
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEA-----SQACM 142
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA EV LL SAN A +G P+H AA G+ +V +LLSK A+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
NL N G T LH A +G + + ++LI G +++ + +
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E V LL + S + ++G+ P+H AA G V + E+LL + A
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMT---KKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
N G T LH A L IV+LL+ RG +S
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVA+ GH +V+ LL S NV N E P+H AA G+ + + LL A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE---TPLHMAARAGHTEVAKYLLQNKAK 72
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
VN K +T LH AA G +V+LL+ A N
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVAA G V E+LL D N A + G P+H A N+ IV++LL +G
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
+ G T LH AA + +++ L+ G N++
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVA+ G+ ++V+ LL VNA + G++P+H AA G+ IV +LL GA
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
N + G T L A G++ + ++L
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P+H A+ +G++ IV+ LL +GA N+ N T LH AA G ++ + L+ AK+N+K
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 144 DK 145
K
Sbjct: 77 AK 78
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVA + ++V++LL S + + G+ P+H AA V + LL G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA--CWLHSIA 153
N ++ G T LH AA +G ++V LL+S+ A N +K+ LH +A
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 11 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
GADV+ K+ GG LH A S G ++ ELL+ GA +N D K LH A
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 11 DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHPEVVEILLSVD 68
D+ L +AA+ GD T R+ + R T LH AA VVE LL
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLL--- 64
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ V+A D+ G P+H+A S G+ + E+L+ GA VN+ + T LH AA+KG +
Sbjct: 65 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 129 IVELLISRGAKINSKDK 145
I +LL+ GA K++
Sbjct: 125 ICKLLLQHGADPTKKNR 141
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A S GH EV E+L+ + VVN D + P+H AA+ G I ++LL GAD
Sbjct: 81 LHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 137
Query: 109 LKNDGGRTAL 118
KN G T L
Sbjct: 138 KKNRDGNTPL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 9 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
GADV+ K+ GG LH A S G ++ ELL+ GA +N D K LH A
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 11 DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHPEVVEILLSVD 68
D+ L +AA+ GD T R+ + R T LH AA VVE LL
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLL--- 62
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ V+A D+ G P+H+A S G+ + E+L+ GA VN+ + T LH AA+KG +
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 129 IVELLISRGAKINSKDK 145
I +LL+ GA K++
Sbjct: 123 ICKLLLQHGADPTKKNR 139
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A S GH EV E+L+ + VVN D + P+H AA+ G I ++LL GAD
Sbjct: 79 LHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135
Query: 109 LKNDGGRTAL 118
KN G T L
Sbjct: 136 KKNRDGNTPL 145
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 13 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACWLHSIA 153
GADV+ K+ GG LH A S G ++ ELL+ GA +N D K LH A
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 1 MDMDIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHP 58
M + + + D+ L +AA+ GD T R+ + R T LH AA
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRV 59
Query: 59 EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
VVE LL + V+A D+ G P+H+A S G+ + E+L+ GA VN+ + T L
Sbjct: 60 SVVEYLL---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 116
Query: 119 HYAASKGWLKIVELLISRGAKINSKDK 145
H AA+KG +I +LL+ GA K++
Sbjct: 117 HEAAAKGKYEICKLLLQHGADPTKKNR 143
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A S GH EV E+L+ + VVN D + P+H AA+ G I ++LL GAD
Sbjct: 83 LHNACSYGHYEVAELLV---KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 139
Query: 109 LKNDGGRTAL 118
KN G T L
Sbjct: 140 KKNRDGNTPL 149
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKD 144
IV++L+ G +N D
Sbjct: 100 IVKMLLDCGVDVNEYD 115
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 144 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKD 144
IV++L+ G +N D
Sbjct: 82 IVKMLLDCGVDVNEYD 97
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 126 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 159
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKD 144
IV++L+ G +N D
Sbjct: 84 IVKMLLDCGVDVNEYD 99
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINS 142
N G T LH AAS G IV+ L+ A IN+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
N+ G LHYA G ++ E L++ GA ++ +K
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 126 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINS 142
N G T LH AAS G IV+ L+ A IN+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
N+ G LHYA G ++ E L++ GA ++ +K
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 131
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 121 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 155
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N TLLH+A+ G VE LL NV D GW P+H A + G++ +VE+LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
A VN + LH AA G + IV+LL+S GA N+
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A + GH +VVE+LL + +VN + +P+H AA G+V IV++LLS GA
Sbjct: 45 TPLHEACNHGHLKVVELLL---QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 107 VNLKNDGGRTALHYA 121
N N G + Y
Sbjct: 102 RNAVNIFGLRPVDYT 116
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW 148
N G T LH A+ KG + VE L+ G+ N KD A W
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW 44
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RN D LH+A GH +VV+ LL +S N D G P+ A S G+ +V +L
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
L GA +N N+ G TALH A + + +VELL+ GA + +K
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++G +P+H AA G ++ +LL GA+ +N LH A +G ++V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 134 ISRGAKINSKD 144
+ AK N KD
Sbjct: 139 LDSNAKPNKKD 149
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T L A S GH E+V +LL S +NA + +G +H A +V +VE+LL GA
Sbjct: 154 TPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
V + N RTA+ A KI+ELL
Sbjct: 211 VQVLNKRQRTAVDCAEQNS--KIMELL 235
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 62 EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
E L+++ NV +A D P+H AA V IV++LL GADV+ K+ GG LH
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKD 144
A S G ++ ELL+ GA +N+ D
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMD 121
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA +V++LL + V+A D+ G P+H+A S G+ + E+LL GA
Sbjct: 60 TPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
VN + T LH AASK +++ LL+S GA
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 47 TLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
T LH A + HP +V E+LL + ANV N +++ P+H AA + ++E+L
Sbjct: 213 TALHCAVASLHPKRKQVAELLLR--KGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
GA +N + G+TALH AA G L+ LL+S G+
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A S GH EV E+LL + VNA+D + P+H AAS V + +LLS GAD
Sbjct: 95 LHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 109 LKNDGGRTALHYAAS 123
L N G++A+ A +
Sbjct: 152 LVNCHGKSAVDMAPT 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N D T LHVAA H +V+E+L + +NA+D G +H AA G++ +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVL---HKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 101 LSKGADVNLKNDGGRTA 117
LS G+D ++ + G TA
Sbjct: 300 LSYGSDPSIISLQGFTA 316
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 96 IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+ E+LL KGA+VN KN T LH AA + ++E+L GAK+N+ D
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA GN + LL+ +VN GR T LH AA ++IV+LL+ GA +++KDK
Sbjct: 31 AARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
RN D T LHVA + E V++LL E ++AVD + G +P+ A ++++V++
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLL---ERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
LL GA+VN + G +ALH A+ +G L +V L+ GA +S K C
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNC 214
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N+ +T LH+A P VV +L++ S A+D G H A + T + LL
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 102 SKGA----DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
A D+ +N G TALH A + + V+LL+ RGA I++ D
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 78 DEEGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
DE+G P+H A GN+ +V + G ++++ N+ +T LH A +V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 134 ISRGAKINSKDK 145
++ GA + D+
Sbjct: 66 VTAGASPMALDR 77
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
+V++LL ANV NA G + +HSA+ G + +V L+ GAD +LKN T L
Sbjct: 165 MVQLLL--QHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Query: 120 YAASKGWLKIVE 131
A S+ + I+
Sbjct: 222 VARSRRVIDILR 233
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
L+ G T AA G +K+++L +S+GA +N D
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A ++VE+LL A+ V + G P AA G+V ++++ LSKGAD
Sbjct: 41 TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G TA AA G +K ++ L RGA +N + K
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 150 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
GADVN++ + G+T L A K L +V+ L+ +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS + A+V N D G+ AA G V ++ L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLS--KGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKD 144
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
L+ G T AA G +K+++L +S+GA +N D
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECD 122
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A ++VE+LL A+ V + G P AA G+V ++++ LSKGAD
Sbjct: 61 TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
VN + G TA AA G +K ++ L RGA +N + K
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 170 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
GADVN++ + G+T L A K L +V+ L+ +
Sbjct: 228 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS VN D G+ AA G V ++ L
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKD 144
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN ++
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
DVN++++ G LH AA +G L++VE L+ G + + D AC
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACWL 149
DVN++++ G LH AA +G L++VE L+ G + + D AC L
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
DVN++++ G LH AA +G L++VE L+ G + + D AC
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKAC 147
DVN++++ G LH AA +G L++VE L+ G + + D AC
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--L 149
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D W L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 150 HSIA 153
H A
Sbjct: 108 HCAA 111
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 53 ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
A+C + E+L ++ A++ N + +G +H A NV +V+ L+ GA++N ++
Sbjct: 46 AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINS 142
G LH AAS G+L I E LIS+GA + +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH A + ++V+ L V+ AN+ N D EGW P+H+AAS G + I E L+
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFL--VENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 102 SKGADVNLKNDGGRTAL 118
S+GA V N G T L
Sbjct: 127 SQGAHVGAVNSEGDTPL 143
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVAA+ G+ EV+++L+ ++ VN D +GW P+H+AA G +L+ D
Sbjct: 201 TALHVAAAKGYTEVLKLLI---QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 107 VNLKNDGGRTALHYA 121
+ N G+TA A
Sbjct: 258 MEAVNKVGQTAFDVA 272
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
+A S G+ V LL +GAD+N N G TALH A + +V+ L+ GA IN D
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 147 CW--LHSIA 153
W LH+ A
Sbjct: 106 GWIPLHAAA 114
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 34/135 (25%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI------------HSAASIGNVTI 96
LH AASCG+ ++ E L+S V AV+ EG P+ + + V I
Sbjct: 110 LHAAASCGYLDIAEYLIS---QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 97 V------EMLLSKGA----------DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
E ++ + A DV GG TALH AA+KG+ ++++LLI +
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGG-TALHVAAAKGYTEVLKLLIQARYDV 225
Query: 141 NSKDKACW--LHSIA 153
N KD W LH+ A
Sbjct: 226 NIKDYDGWTPLHAAA 240
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
G +H AA+ G ++++L+ DVN+K+ G T LH AA G + +L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW--L 149
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D W L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 150 HSIA 153
H A
Sbjct: 108 HCAA 111
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK H
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HH 68
Query: 152 IAP 154
I P
Sbjct: 69 ITP 71
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 36 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 106 DVNLKNDGGRTAL 118
D +K G TAL
Sbjct: 93 DKTVKGPDGLTAL 105
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 134 ISRGA 138
+S+GA
Sbjct: 88 LSKGA 92
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK H
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HH 73
Query: 152 IAP 154
I P
Sbjct: 74 ITP 76
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 41 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 106 DVNLKNDGGRTAL 118
D +K G TA
Sbjct: 98 DKTVKGPDGLTAF 110
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 134 ISRGA 138
+S+GA
Sbjct: 93 LSKGA 97
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
+L N G T LH A+ G+L IVELL+S GA +N+++
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 146
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEIL---LSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
R+ T LH+A G V +L + +++ A + G +H A+ G + IV
Sbjct: 71 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 98 EMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKIN 141
E+L+S GADVN + GRTALH A +V LL+ GA +N
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
+L N G T LH A+ G+L IVELL+S GA +N+++
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEIL---LSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
R+ T LH+A G V +L + +++ A + G +H A+ G + IV
Sbjct: 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 98 EMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKIN 141
E+L+S GADVN + GRTALH A +V LL+ GA +N
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACWL 149
DVN++++ G LH AA +G L++VE L+ G + + D AC L
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA +N++DK
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ A+V A D+ G P+H AA G++ +V++LL GADVN ++
Sbjct: 13 AARAGQDDEVRILMA--NGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ VNA D+ G + GN + E+L
Sbjct: 41 TPLHLAARNGHLEVVKLLL---EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
D + T LH A GH +V L+ +++ D EG + IH AA G+ +IV L++
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK 145
KG DV++ + G T L +AA + + LL++ +N DK
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWL 127
E+ V D+E +H AA + +V+ +SKGA V+ L D T LH+A +G L
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 128 KIVELLISRGA 138
+V L+ GA
Sbjct: 90 SMVVQLMKYGA 100
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 41/128 (32%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI----------------------- 85
+H+AA GH +V L++ + V+ +D+ G P+
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 86 ------------HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVE 131
H A GN T++ +LL GA+V+ +N G +AL A + W+ I
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM-INH 228
Query: 132 LLISRGAK 139
L +R AK
Sbjct: 229 LQEARQAK 236
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
L+ G DV + T LH+AA + +V+ IS+GA ++
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
LL+ R IN D
Sbjct: 87 LLLERDVDINIYD 99
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L +A++ G+ ++V +LL D N+ D G P+ A +V VE LL++GAD+
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVHGNHVKCVEALLARGADLT 129
Query: 109 LKNDGGRTALHYAASKGWLKIVELL 133
+ D G T + A + G+ K+ +++
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVI 154
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLK 110
A++ G E V LL +++ E S AS G T IV +LL + D+N+
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESAL----SLASTGGYTDIVGLLLERDVDINIY 98
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
+ G T L YA +K VE L++RGA + ++
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVEALLARGADLTTE 131
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
LL+ R IN D
Sbjct: 87 LLLERDVDINIYD 99
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L +A++ G+ ++V +LL D N+ D G P+ A +V VE LL++GAD+
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 109 LKNDGGRTALHYAASKGWLKIVELL 133
+ D G T + A + G+ K+ +++
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVI 154
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLK 110
A++ G E V LL +++ E S AS G T IV +LL + D+N+
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESAL----SLASTGGYTDIVGLLLERDVDINIY 98
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
+ G T L YA +K VE L++RGA + ++
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A + V +ILL A +NA +G P+ AA + +VE L++ A
Sbjct: 85 RTPLHAAVAADAMGVFQILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
D+N ++ G+TALH+AA+ + V +L+ A +++D
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 59 EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
+V+ LL+ + A + +D+ G +H AA + LL GAD N +++ GRT L
Sbjct: 31 QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 119 HYAASKGWLKIVELLI-SRGAKINSK 143
H A + + + ++L+ +R +N++
Sbjct: 89 HAAVAADAMGVFQILLRNRATNLNAR 114
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 96 IVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
++ LL++GA++N D G T+LH AA + L+ GA NS+D
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDN 82
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVEL 132
VN +D+ G ++ A G+ IVE L ++ ++N +N G TALH AA KG+ IV+L
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 133 LISRGAKINSKD 144
L+++GA+ + ++
Sbjct: 159 LLAKGARTDLRN 170
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T L+ A GH ++VE L + N+ +N ++ G +H+AA G IV++LL+KGA
Sbjct: 108 TALYWACHGGHKDIVEXLFT---QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 106 DVNLKN 111
+L+N
Sbjct: 165 RTDLRN 170
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
E P+H AA++ + IV++LL G D + +D G TAL+YA G + V+L + + +
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKACW 148
+ K W
Sbjct: 121 LXFYGKTGW 129
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA + ++DK
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + V A D+ G P+H AA G++ +V++LL GADV ++
Sbjct: 31 AARAGQDDEVRILMA---NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ V A D+ G + GN + E+L
Sbjct: 59 TPLHLAARNGHLEVVKLLL---EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ +RT L VA G ++ L+ E+ + + D EG + A + I E L
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
LSKG++VN K+ G+T L ++ G+ ++ L+ GA +N ++
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+ + G + LL GA+VN +N G T L A+ G +IV+ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 134 ISRGAKINSKD 144
+ GA I+++D
Sbjct: 154 LELGADISARD 164
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D P+ A +G ++ L+ + K+ G TAL +A L I E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 135 SRGAKINSKD 144
S+G+ +N+KD
Sbjct: 89 SKGSNVNTKD 98
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI--GNVT---IVEMLLSKGAD 106
AA GH + V++LL ++ ++ ++ G+ + A + GN IV++L+ GAD
Sbjct: 113 AAEKGHIDNVKLLL--EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
++K++ GRTA+ YA KG+ +I ++L
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
LL A +V EIL ++ V+ VD EG P++ A ++ I + L+ +GAD+
Sbjct: 9 LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLI 134
NL+N + YA ++G +I+ ++
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYML 92
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
LL AA G EVV+ + + N + +EEG +H+A N +IV+ L++ GA+V
Sbjct: 24 LLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
N + G T LH AAS I L+ GA I
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
AA G + +V+ + + D + N+ G TALH A IV+ LI+ GA +NS D
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 148 W--LHSIA 153
W LH A
Sbjct: 88 WTPLHCAA 95
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 80 EGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+G +H AA + N IV+ L+ KG++ + +++ G+T + AA +G +++V LI +GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 139 KINSKD 144
+ + D
Sbjct: 338 SVEAVD 343
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH AA + +V+ L V E + + DE+G PI AA G + +V L+ +GA
Sbjct: 280 RTALHYAAQVSNXPIVKYL--VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
V + TA A + IV++
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANV------VNAVDEEGWAPIHSAASIGNVTIVE 98
+RT+LH AS E E L+ V E+ VNA D + P+ A +V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 99 MLLSKGADVNLKNDGGRTALHYAAS 123
L GAD + N R+ALH AA+
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAA 208
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
GR LH+A G + L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+H A +G+ + + L +GAD+ ++ GR L A IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 134 ISRGAKINSKDKA 146
R AK+ + A
Sbjct: 321 --RLAKMREAEAA 331
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D L
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D L
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 109
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
GR LH+A G + L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+H A +G+ + + L +GAD+ ++ GR L A IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 134 ISRGAKINSKDKA 146
R AK+ + A
Sbjct: 321 --RLAKMREAEAA 331
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
GR LH+A G + L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+H A +G+ + + L +GAD+ ++ GR L A IV LL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 134 ISRGAKINSKDKA 146
R AK+ + A
Sbjct: 321 --RLAKMREAEAA 331
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 133 LISRGAKINSKDK 145
L+ GA I +D+
Sbjct: 129 LVELGADIEVEDE 141
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 131 ELGADIEVEDERGLTALELA 150
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 70 SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
+A+VV+ + W +AA + + LL DV+ ++ GRTAL + A G K
Sbjct: 37 AADVVSEYETPWW----TAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKC 91
Query: 130 VELLISRGAKINSKD 144
V LL GA ++ +D
Sbjct: 92 VRLLAEAGADLDHRD 106
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 133 LISRGAKINSKDK 145
L+ GA I +D+
Sbjct: 130 LVELGADIEVEDE 142
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 132 ELGADIEVEDERGLTALELA 151
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P +AA + + LL DV+ ++ GRTAL + A G K V LL GA ++ +
Sbjct: 48 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 144 D 144
D
Sbjct: 107 D 107
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 54 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 110
Query: 116 TALHYAASKGWLKIVELL 133
+H A +G +V L
Sbjct: 111 LPIHLAIREGHSSVVSFL 128
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D L
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 111
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYA 121
+ GA V + GG TALH A
Sbjct: 66 AAGAGVLVAERGGHTALHLA 85
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSK 143
L+ GA ++
Sbjct: 211 LLKAGADPTAR 221
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKI 140
VE L + GA +
Sbjct: 61 VEKLYAAGAGV 71
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYA 121
+ GA V + GG TALH A
Sbjct: 66 AAGAGVLVAERGGHTALHLA 85
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSK 143
L+ GA ++
Sbjct: 211 LLKAGADPTAR 221
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKI 140
VE L + GA +
Sbjct: 61 VEKLYAAGAGV 71
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 52 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 108
Query: 116 TALHYAASKGWLKIVELL 133
+H A +G +V L
Sbjct: 109 LPIHLAIREGHSSVVSFL 126
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D L
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSL 109
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+PIH AA G+V V L++ G +++ K T L+ A V+ L+ GA +N
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 143 -KDKACWLHSIA 153
K + LH++A
Sbjct: 163 GKGQDSPLHAVA 174
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
+E +L + N+ + G + A S G V +V+ LL+ ADVN+++D G TAL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 121 AASKGWLKIVELLIS 135
A G +I LL++
Sbjct: 223 ACEHGHKEIAGLLLA 237
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACW 148
VN+ + G TALHY+ S +V+ L+ G K++ +++A +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY 146
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++DD T L A GH E+ +LL+V ++ D +G + A G I ML
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML 269
Query: 101 LSK 103
S+
Sbjct: 270 YSR 272
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
R T LH+AA + E +L+ E EG +H A NV +V
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99 MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKD 144
LL++GA V+ + G G L +AA G +IV LLI GA I ++D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
G P+ AA +G+ IV +L+ GAD+ ++ G T LH
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150
G+TALH A + +V L++RGA ++++ H
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFH 111
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+PIH AA G+V V L++ G +++ K T L+ A V+ L+ GA +N
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 143 -KDKACWLHSI 152
K + LH++
Sbjct: 219 GKGQDSPLHAV 229
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA+ + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLISRGA 138
+ ++LI A
Sbjct: 105 VFQILIRNRA 114
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
DVN +D G++ALH+AA+ + +L+ GA
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA+ + + LL AN+ D G P+H+A S + +
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQ 107
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
L GA+ +++N+ T L AA +G + ++L+
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +ILL A ++A +G P+ AA + ++E L++ A
Sbjct: 56 RTPLHAAVSADAQGVFQILLR--NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
DVN +D G++ALH+AA+ + +L+ GA
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 146
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD ++++ GRT LH A S
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 129 IVELLISRGA 138
+ ++L+ A
Sbjct: 70 VFQILLRNRA 79
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 85 RMHDGTTPLILAARLALEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
L GA+ +++N+ T L AA +G + ++L+
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 129 IVELLISRGA 138
+ ++LI A
Sbjct: 73 VFQILIRNRA 82
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 59 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
DVN +D G++ALH+AA+ + +L+ GA
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
L GA+ +++N+ T L AA +G + ++L+
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLISRGA 138
+ ++LI A
Sbjct: 105 VFQILIRNRA 114
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
DVN +D G++ALH+AA+ + +L+ GA
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
L GA+ +++N+ T L AA +G + ++L+
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 129 IVELLISRGA 138
+ ++LI A
Sbjct: 106 VFQILIRNRA 115
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 92 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 149
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
DVN +D G++ALH+AA+ + +L+ GA
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 182
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
L GA+ +++N+ T L AA +G + ++L+
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL E+ + NA + G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALL---EAGALPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKD 144
+ T +H AA +G+L + +L GA+++ +D
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 71 ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA 122
AN++NA D G ++ AA +GN++IV+ LL GAD + N G + + A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
VDE G P+H SI N+ +V+ L+ G++ ++ G + L
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 168
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL + N N+ G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSY---GRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKD 144
+ T +H AA +G+L + +L GA+++ +D
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D+E IH AA G V L+ G ++N G TALH A G + + L S G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 142 SKDKA 146
+ ++A
Sbjct: 254 TVNEA 258
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
+ +LH+A + + ++ + ++ ++A +G +H AA +++LL
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELL 133
A V N+ G TAL A K + ELL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R D T L +AA ++E L++ S VNAVD+ G + +H AA++ NV +L
Sbjct: 11 RMHDGTTPLILAARLALEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
L GA+ +++N+ T L AA +G + ++L+ A
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 105
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 0.48, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 142 SKDKA 146
+ ++A
Sbjct: 235 TVNEA 239
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
+ +LH+A + + ++ + ++ ++A +G +H AA +++LL
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELL 133
A V N+ G TAL A K + ELL
Sbjct: 231 ALVGTVNEAGETALDIARKKHHKECEELL 259
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 25/114 (21%)
Query: 56 GHPEVVEILLSV----DESANVVNAVDE----EGWAPIHSAASIGNVTIVEMLLSKGADV 107
G + + +LL V D VNA +G +H A N T+V +L+ GADV
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADV 127
Query: 108 N-------LKNDGGRTALHY-------AASKGWLKIVELLIS---RGAKINSKD 144
K GR ++ AA L IV+ L+ + A I+++D
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
A GN+ E + S DV + G+TALH A + VELL+ +GA ++++ +
Sbjct: 72 AEKTGNMR--EFINSPFRDVYYR---GQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 148 WLHS 151
+
Sbjct: 127 FFQP 130
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
A GN+ E + S D+ + G+TALH A + VELL+++GA ++++ +
Sbjct: 70 AERTGNMR--EFINSPFRDIYYR---GQTALHIAIERRCKHYVELLVAQGADVHAQARGR 124
Query: 148 WLHS 151
+
Sbjct: 125 FFQP 128
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
EGWA +HS+A G+ + E LL K D +L
Sbjct: 106 EGWAALHSSAERGDWDVAEALLEKMDDPSL 135
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
G +ALH A K L+ V+LL+ GA +++ +AC
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHA--RAC 126
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
G +ALH A K L+ V+LL+ GA ++ +AC
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHL--RAC 134
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
G +ALH A K L+ V+LL+ GA ++ +AC
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHL--RAC 121
>pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
pdb|1S14|B Chain B, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
Length = 194
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 53 ASCGHPEVVEILLSVDESANVVNAVDEEGWA-PIHSAASIGNVTIVEML-----LSKGAD 106
A GH + V+++L D+S V++ D G IH + V ++ + LSK +
Sbjct: 47 ALAGHAKRVDVILHADQSLEVID--DGRGMPVDIHPEEGVPAVELILCISVVNALSKRVE 104
Query: 107 VNLKNDG 113
VN++ DG
Sbjct: 105 VNVRRDG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,024,437
Number of Sequences: 62578
Number of extensions: 134687
Number of successful extensions: 837
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 374
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)