Query 031607
Match_columns 156
No_of_seqs 120 out of 1813
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 03:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 4.3E-35 1.5E-39 183.3 15.5 137 12-153 6-142 (169)
2 4b93_B Ankyrin repeat domain-c 100.0 6.5E-35 2.2E-39 194.9 14.4 148 2-154 78-225 (269)
3 4gpm_A Engineered protein OR26 100.0 2.1E-34 7.2E-39 180.2 14.9 136 2-142 29-164 (169)
4 2rfm_A Putative ankyrin repeat 100.0 9.3E-34 3.2E-38 180.6 14.1 146 3-153 28-173 (192)
5 3twr_A Tankyrase-2; ankyrin re 100.0 4.8E-33 1.6E-37 173.4 14.5 145 6-154 4-148 (165)
6 3v31_A Ankyrin repeat family A 100.0 1.4E-32 4.6E-37 171.6 14.2 140 9-153 2-141 (167)
7 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.8E-32 6.3E-37 171.4 14.8 143 6-153 10-152 (169)
8 3aji_A 26S proteasome non-ATPa 100.0 3.2E-32 1.1E-36 177.8 15.2 148 2-154 65-212 (231)
9 3f6q_A Integrin-linked protein 100.0 3.5E-32 1.2E-36 171.6 14.7 142 9-154 4-145 (179)
10 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-32 5E-37 180.1 13.3 152 2-155 37-192 (236)
11 2dzn_A Probable 26S proteasome 100.0 4.9E-32 1.7E-36 176.5 15.3 147 6-155 68-216 (228)
12 1awc_B Protein (GA binding pro 100.0 5.4E-32 1.9E-36 166.7 14.4 138 10-153 2-139 (153)
13 3hra_A Ankyrin repeat family p 100.0 6.2E-32 2.1E-36 173.1 14.9 148 2-153 31-184 (201)
14 1s70_B 130 kDa myosin-binding 100.0 1E-31 3.6E-36 181.4 16.6 152 2-155 65-273 (299)
15 3v30_A DNA-binding protein rfx 100.0 5.4E-32 1.8E-36 169.6 13.9 139 11-153 3-141 (172)
16 1oy3_D Transcription factor in 100.0 3.3E-32 1.1E-36 182.2 13.7 114 39-155 152-266 (282)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 4.5E-32 1.5E-36 179.6 13.8 147 3-153 83-229 (253)
18 3v30_A DNA-binding protein rfx 100.0 5E-32 1.7E-36 169.8 12.7 143 3-150 29-171 (172)
19 1bi7_B P16INK4A, MTS1, multipl 100.0 8.2E-33 2.8E-37 171.0 8.8 145 4-154 6-151 (156)
20 2rfa_A Transient receptor pote 100.0 2.3E-31 8E-36 173.9 16.1 149 2-153 29-203 (232)
21 1d9s_A Cyclin-dependent kinase 100.0 3E-32 1E-36 164.9 10.6 132 2-139 4-136 (136)
22 3aji_A 26S proteasome non-ATPa 100.0 1.5E-31 5.2E-36 174.6 14.8 146 3-153 33-178 (231)
23 1k1a_A B-cell lymphoma 3-encod 100.0 3.2E-31 1.1E-35 173.9 16.4 150 3-155 72-224 (241)
24 3b7b_A Euchromatic histone-lys 100.0 2.3E-31 7.8E-36 174.4 15.4 147 1-152 2-149 (237)
25 2f8y_A Notch homolog 1, transl 100.0 2.1E-31 7.2E-36 173.1 14.9 142 7-152 22-163 (223)
26 1oy3_D Transcription factor in 100.0 1.1E-31 3.8E-36 179.7 13.9 149 3-153 38-231 (282)
27 2rfa_A Transient receptor pote 100.0 1.5E-31 5.2E-36 174.8 14.1 144 9-153 2-160 (232)
28 3b7b_A Euchromatic histone-lys 100.0 1.7E-31 5.8E-36 175.0 14.2 148 3-154 70-217 (237)
29 2f8y_A Notch homolog 1, transl 100.0 4.1E-31 1.4E-35 171.7 15.5 148 2-153 50-197 (223)
30 1sw6_A Regulatory protein SWI6 100.0 8.4E-32 2.9E-36 184.3 12.1 149 2-155 122-324 (327)
31 1k1a_A B-cell lymphoma 3-encod 100.0 7.1E-31 2.4E-35 172.2 15.7 150 2-153 38-189 (241)
32 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.3E-31 4.5E-36 166.3 11.5 139 9-153 4-143 (162)
33 1yyh_A HN1;, notch 1, ankyrin 100.0 2.1E-31 7.1E-36 176.4 13.2 144 6-153 53-196 (253)
34 2dzn_A Probable 26S proteasome 100.0 5.6E-31 1.9E-35 171.5 14.7 148 5-153 31-180 (228)
35 4hbd_A KN motif and ankyrin re 100.0 1.2E-31 4.3E-36 179.6 11.6 147 3-153 104-256 (276)
36 2xai_A ASB-9, ankyrin repeat a 100.0 8.2E-31 2.8E-35 174.3 15.2 150 2-154 28-206 (261)
37 2etb_A Transient receptor pote 100.0 2.7E-31 9.2E-36 176.0 12.2 147 2-153 31-227 (256)
38 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-30 4.1E-35 173.5 15.0 139 9-153 2-140 (261)
39 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.7E-31 1.9E-35 162.5 12.4 138 10-153 2-139 (156)
40 2vge_A RELA-associated inhibit 100.0 1.6E-31 5.6E-36 174.7 9.7 146 4-154 15-163 (229)
41 3d9h_A CDNA FLJ77766, highly s 100.0 3.2E-30 1.1E-34 173.5 15.7 150 2-154 84-262 (285)
42 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-30 7.5E-35 174.3 14.2 145 3-153 52-196 (285)
43 1n11_A Ankyrin; clathrin, BAND 100.0 1.9E-30 6.4E-35 183.5 14.5 147 2-153 237-383 (437)
44 3utm_A Tankyrase-1; tankyrase, 100.0 4.8E-30 1.6E-34 176.3 15.5 150 2-153 83-319 (351)
45 3ljn_A Hypothetical protein; a 100.0 1.9E-30 6.3E-35 179.8 13.2 149 3-153 13-217 (364)
46 3utm_A Tankyrase-1; tankyrase, 100.0 6.9E-30 2.4E-34 175.5 15.8 147 2-153 50-286 (351)
47 1n0r_A 4ANK, 4 ankyrin repeats 100.0 1.3E-29 4.3E-34 151.0 14.7 126 9-139 1-126 (126)
48 2etb_A Transient receptor pote 100.0 2.1E-30 7.1E-35 171.7 12.4 143 9-153 1-178 (256)
49 3ljn_A Hypothetical protein; a 100.0 1.7E-30 5.7E-35 180.0 12.4 110 41-153 134-250 (364)
50 3hra_A Ankyrin repeat family p 100.0 5.1E-30 1.7E-34 164.1 13.8 143 7-153 2-146 (201)
51 2jab_A H10-2-G3; HER2, darpin, 100.0 7.5E-30 2.6E-34 154.3 13.7 127 6-137 10-136 (136)
52 3jxi_A Vanilloid receptor-rela 100.0 1.3E-30 4.3E-35 173.1 11.0 143 8-153 44-231 (260)
53 3kea_A K1L; tropism, ANK repea 100.0 3E-30 1E-34 173.6 12.8 144 2-153 23-167 (285)
54 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.5E-30 1.9E-34 158.9 13.0 132 2-139 30-162 (162)
55 2y1l_E Darpin-8.4; hydrolase-i 100.0 2E-29 6.8E-34 157.6 15.0 131 2-137 39-169 (169)
56 3f6q_A Integrin-linked protein 100.0 3.7E-30 1.3E-34 162.3 11.4 141 2-147 31-171 (179)
57 4b93_B Ankyrin repeat domain-c 100.0 1.6E-30 5.5E-35 173.6 10.2 146 3-153 45-191 (269)
58 1n11_A Ankyrin; clathrin, BAND 100.0 8.6E-30 2.9E-34 180.1 13.7 146 2-152 6-151 (437)
59 2pnn_A Transient receptor pote 100.0 7.9E-30 2.7E-34 170.4 12.6 145 6-153 50-239 (273)
60 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.3E-30 1.1E-34 169.4 10.5 142 7-154 2-144 (239)
61 1s70_B 130 kDa myosin-binding 100.0 1.4E-29 4.8E-34 171.0 13.8 141 8-153 38-238 (299)
62 3v31_A Ankyrin repeat family A 100.0 2E-29 6.9E-34 157.2 12.5 135 2-141 28-162 (167)
63 3eu9_A Huntingtin-interacting 100.0 4.4E-29 1.5E-33 163.4 14.7 148 2-153 1-148 (240)
64 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-29 6.1E-34 165.4 12.4 150 2-154 70-226 (236)
65 2pnn_A Transient receptor pote 100.0 9.5E-30 3.2E-34 170.0 11.2 151 3-153 6-190 (273)
66 1wdy_A 2-5A-dependent ribonucl 100.0 6.4E-29 2.2E-33 166.2 15.1 141 7-152 36-187 (285)
67 2rfm_A Putative ankyrin repeat 100.0 6.7E-29 2.3E-33 158.1 14.3 131 2-137 60-190 (192)
68 3kea_A K1L; tropism, ANK repea 100.0 6.3E-30 2.1E-34 172.1 9.9 139 9-153 61-201 (285)
69 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-28 4.7E-33 164.6 15.5 144 4-152 99-258 (285)
70 2fo1_E LIN-12 protein; beta-ba 100.0 5.2E-29 1.8E-33 173.2 13.9 149 5-153 194-352 (373)
71 2fo1_E LIN-12 protein; beta-ba 100.0 3E-29 1E-33 174.4 12.4 150 2-153 158-319 (373)
72 3twr_A Tankyrase-2; ankyrin re 100.0 3.6E-29 1.2E-33 155.8 11.5 131 2-138 34-164 (165)
73 3jxi_A Vanilloid receptor-rela 100.0 3.7E-29 1.3E-33 166.0 10.3 145 7-153 2-182 (260)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.1E-28 1.1E-32 150.2 13.4 128 2-136 28-155 (156)
75 1awc_B Protein (GA binding pro 100.0 5.6E-28 1.9E-32 148.7 13.6 123 6-133 30-152 (153)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 6E-29 2.1E-33 163.4 8.9 139 8-151 35-176 (239)
77 3ehr_A Osteoclast-stimulating 100.0 3.1E-29 1.1E-33 163.0 7.4 140 5-149 68-208 (222)
78 3eu9_A Huntingtin-interacting 100.0 5.3E-28 1.8E-32 158.2 12.8 147 2-153 34-216 (240)
79 3t8k_A Uncharacterized protein 100.0 2.1E-29 7.3E-34 159.8 5.6 137 10-153 6-160 (186)
80 3c5r_A BARD-1, BRCA1-associate 100.0 3.9E-29 1.3E-33 151.3 6.2 127 5-136 5-131 (137)
81 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-27 5.2E-32 163.6 14.8 142 9-152 24-207 (337)
82 3c5r_A BARD-1, BRCA1-associate 100.0 2E-27 6.8E-32 143.7 13.3 115 37-155 3-117 (137)
83 2b0o_E UPLC1; arfgap, structur 99.9 3.2E-27 1.1E-31 159.9 12.2 135 10-155 151-294 (301)
84 3t8k_A Uncharacterized protein 99.9 3.3E-28 1.1E-32 154.3 6.6 137 3-144 30-184 (186)
85 3aaa_C Myotrophin, protein V-1 99.9 2.2E-27 7.4E-32 141.1 9.4 111 7-122 4-114 (123)
86 1d9s_A Cyclin-dependent kinase 99.9 2.1E-27 7.3E-32 143.5 9.0 114 36-153 3-117 (136)
87 4hbd_A KN motif and ankyrin re 99.9 8.2E-27 2.8E-31 156.2 11.7 131 2-137 137-273 (276)
88 3aaa_C Myotrophin, protein V-1 99.9 1.5E-26 5E-31 137.5 11.2 111 42-155 4-114 (123)
89 4g8k_A 2-5A-dependent ribonucl 99.9 5.1E-26 1.7E-30 156.1 14.7 147 2-153 117-279 (337)
90 3lvq_E ARF-GAP with SH3 domain 99.9 4.4E-26 1.5E-30 163.7 14.7 132 10-146 132-272 (497)
91 3jue_A Arfgap with coiled-coil 99.9 4.1E-26 1.4E-30 158.0 12.6 143 7-154 196-344 (368)
92 3deo_A Signal recognition part 99.9 3.6E-26 1.2E-30 144.6 10.9 112 7-124 41-153 (183)
93 3ui2_A Signal recognition part 99.9 1.7E-26 5.8E-31 152.2 8.1 127 7-139 42-185 (244)
94 1dcq_A PYK2-associated protein 99.9 2.8E-25 9.4E-30 148.9 14.0 129 9-140 129-264 (278)
95 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-25 4.6E-30 135.6 10.5 109 42-153 11-119 (136)
96 2vge_A RELA-associated inhibit 99.9 2.1E-25 7.1E-30 145.7 11.9 126 26-154 1-128 (229)
97 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7.4E-25 2.5E-29 124.1 11.6 93 44-139 1-93 (93)
98 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.4E-25 2.2E-29 130.5 11.9 107 44-153 1-107 (126)
99 2l6b_A NR1C; ankyrin, consensu 99.9 8.8E-26 3E-30 132.6 7.9 109 40-151 4-112 (115)
100 1bi7_B P16INK4A, MTS1, multipl 99.9 2.9E-25 9.8E-30 137.0 8.2 111 39-153 6-117 (156)
101 3deo_A Signal recognition part 99.9 9.8E-25 3.3E-29 138.0 10.5 108 42-153 41-149 (183)
102 3ehr_A Osteoclast-stimulating 99.9 6.8E-25 2.3E-29 142.5 9.3 112 41-155 69-181 (222)
103 3ui2_A Signal recognition part 99.9 2.7E-24 9.3E-29 141.7 10.1 107 43-153 43-150 (244)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2E-23 6.7E-28 118.2 10.1 93 9-106 1-93 (93)
105 2aja_A Ankyrin repeat family p 99.9 1.6E-25 5.5E-30 155.4 1.1 139 8-154 90-232 (376)
106 1sw6_A Regulatory protein SWI6 99.9 8.3E-25 2.8E-29 149.7 4.1 118 14-136 101-227 (327)
107 2l6b_A NR1C; ankyrin, consensu 99.9 5.1E-24 1.7E-28 125.1 6.2 109 5-118 4-112 (115)
108 2b0o_E UPLC1; arfgap, structur 99.9 3.8E-21 1.3E-25 130.2 13.0 107 44-153 150-265 (301)
109 3jue_A Arfgap with coiled-coil 99.9 1.1E-21 3.9E-26 135.8 10.3 110 41-153 195-307 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.9 3.7E-21 1.3E-25 138.2 12.5 108 43-153 130-246 (497)
111 2aja_A Ankyrin repeat family p 99.9 8.4E-24 2.9E-28 146.9 -2.8 128 6-146 124-257 (376)
112 2zgd_A 3 repeat synthetic anky 99.9 8.1E-21 2.8E-25 110.6 10.0 93 38-133 17-109 (110)
113 1dcq_A PYK2-associated protein 99.8 1.9E-20 6.4E-25 125.5 11.8 108 46-153 131-244 (278)
114 2zgd_A 3 repeat synthetic anky 99.8 3.9E-20 1.3E-24 107.6 9.1 92 4-100 18-109 (110)
115 1gp8_A Protein (scaffolding pr 80.4 2.5 8.6E-05 18.8 2.8 21 12-32 15-35 (40)
116 3zrh_A Ubiquitin thioesterase 56.8 11 0.00036 26.8 3.2 51 16-66 28-90 (454)
117 3qil_A Clathrin heavy chain 1; 50.0 11 0.00038 21.7 2.1 27 7-33 32-58 (125)
118 3gvo_A Pumilio 2, pumilio homo 44.1 27 0.00093 23.9 3.7 26 77-102 213-238 (351)
119 4g26_A Pentatricopeptide repea 41.8 92 0.0032 22.5 6.4 22 12-33 31-52 (501)
120 3gvo_A Pumilio 2, pumilio homo 36.4 55 0.0019 22.3 4.3 25 7-31 70-94 (351)
121 4g26_A Pentatricopeptide repea 30.6 1E+02 0.0034 22.3 5.1 85 11-102 109-199 (501)
122 2dkl_A Trinucleotide repeat co 26.2 59 0.002 17.3 2.4 43 94-142 22-65 (85)
123 1vek_A UBP14, ubiquitin-specif 22.0 1E+02 0.0034 16.3 3.0 44 93-141 29-73 (84)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.3e-35 Score=183.29 Aligned_cols=137 Identities=43% Similarity=0.618 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhc
Q 031607 12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI 91 (156)
Q Consensus 12 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~ 91 (156)
+.|+.|++.|+.++|+.|++.+ ++++.+|..|+||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHHHc
Confidence 4789999999999999999987 78888999999999999999999999999988877 777888999999999999
Q ss_pred CCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||+.
T Consensus 81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~ 142 (169)
T 4gpm_A 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=194.87 Aligned_cols=148 Identities=30% Similarity=0.369 Sum_probs=142.2
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
|+|..+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||+++|+..++.+++++|++.+.+ ++.++..|
T Consensus 78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g 152 (269)
T 4b93_B 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSG 152 (269)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTC
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCC
Confidence 68889999999999999999999999999988 78888999999999999999999999999999887 77889999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||..
T Consensus 153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp CCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.1e-34 Score=180.18 Aligned_cols=136 Identities=38% Similarity=0.556 Sum_probs=125.9
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
|+|..+..|.|||+.|+..++.++++.|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++.++..|
T Consensus 29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad---vn~~d~~G 103 (169)
T 4gpm_A 29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDG 103 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCC
Confidence 78999999999999999999999999999988 78899999999999999999999999999999988 78889999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCc
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~ 142 (156)
+||||+|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+++++|+++|++++-
T Consensus 104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 4
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=9.3e-34 Score=180.62 Aligned_cols=146 Identities=25% Similarity=0.280 Sum_probs=139.2
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
+|.++..|.||||.|+..|+.+++++|++.+ .+++..+..|+||||+|+..++.+++++|++.+.+ ++..+..|.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 102 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGK 102 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence 5678899999999999999999999999988 67888899999999999999999999999999877 777888999
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++.
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 173 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 5
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=4.8e-33 Score=173.37 Aligned_cols=145 Identities=33% Similarity=0.389 Sum_probs=135.2
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
.+..+.++|+.|++.|+.+.+++|++.+ +.+.+..+..|+||||+|+..++.+++++|++.+.+ ++.++..|.|||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L 79 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVPL 79 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCHH
Confidence 4677899999999999999999999975 467777788899999999999999999999999887 778888999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
|+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||++..
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 6
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=1.4e-32 Score=171.62 Aligned_cols=140 Identities=25% Similarity=0.284 Sum_probs=133.1
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
.|.||||.|+..|+.+.+++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 76 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLA 76 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHH
Confidence 4688999999999999999999987 67888999999999999999999999999999877 677788999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||++.
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 141 (167)
T 3v31_A 77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141 (167)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 7
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=1.8e-32 Score=171.44 Aligned_cols=143 Identities=38% Similarity=0.509 Sum_probs=133.7
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
+...+.++++.|++.|+.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.|||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L 84 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPL 84 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHH
Confidence 3456789999999999999999999987 78888999999999999999999999999999877 677888999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 152 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 8
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.2e-32 Score=177.82 Aligned_cols=148 Identities=26% Similarity=0.297 Sum_probs=112.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|++.+.+ ++..+..|
T Consensus 65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g 139 (231)
T 3aji_A 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYD 139 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence 45566666777777777777777777777766 56666677777777777777777777777776665 55667777
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++..
T Consensus 140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 212 (231)
T 3aji_A 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888887754
No 9
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=3.5e-32 Score=171.59 Aligned_cols=142 Identities=27% Similarity=0.340 Sum_probs=132.3
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
.+.++|+.|+..|+.+.+++|++.+ +.+++..+..|+||||+|+..++.+++++|++.+.+ ++.++..|.||||+|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPLHLA 79 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHHHHH
Confidence 4678999999999999999999985 467888999999999999999999999999999877 777888999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 10
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.5e-32 Score=180.10 Aligned_cols=152 Identities=27% Similarity=0.309 Sum_probs=140.2
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccc---ccccccc
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD 78 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~---~~~~~~~ 78 (156)
++|..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|+..+... ...+..+
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence 57888899999999999999999999999987 788889999999999999999999999999987642 2245677
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 79 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
..|.||||+|+..++.+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||+...
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 192 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH
Confidence 8899999999999999999999999999999997 8999999999999999999999999999999999999998753
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.9e-32 Score=176.53 Aligned_cols=147 Identities=26% Similarity=0.279 Sum_probs=121.6
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
.+..|.||||.|+..|+.+++++|++.+.+.+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.|||
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 144 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPL 144 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHH
Confidence 55677888888888888888888888764456777777888888888888888888888887766 667778888888
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHH-HcCCCCCcccccccccccCCC
Q 031607 86 HSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~~~ 155 (156)
|+|+..++.+++++|++.| .+++.++..|.|||++|+..++.+++++|+ ++|++++.+|..|.||++...
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 8888888888888888888 888888888888888888888888888888 788888888888888888653
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-32 Score=166.74 Aligned_cols=138 Identities=35% Similarity=0.445 Sum_probs=129.3
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (156)
Q Consensus 10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (156)
..++|+.|++.|+.+.+++|++.+ .+++ .+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH
Confidence 468999999999999999999998 3444 588899999999999999999999998877 6778889999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus 76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 139 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI 139 (153)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 13
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.2e-32 Score=173.09 Aligned_cols=148 Identities=26% Similarity=0.281 Sum_probs=136.5
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|++.+... ++..+..|
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g 106 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD--LNKHNRYG 106 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTS
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--cccccCCC
Confidence 67888899999999999999999999999987 788889999999999999999999999999654321 67788899
Q ss_pred chHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCC-----HHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..++.+++++|++.| .+++.++..|.||||+|+..+. .+++++|+++|++++.+|..|.||||.
T Consensus 107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 184 (201)
T 3hra_A 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184 (201)
T ss_dssp CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence 99999999999999999999998 8999999999999999999998 899999999999999999999999985
No 14
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1e-31 Score=181.39 Aligned_cols=152 Identities=24% Similarity=0.306 Sum_probs=137.6
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccc------
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN------ 75 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~------ 75 (156)
|+|..+..|.||||.|+..|+.+++++|++.+ .+++..+..|+||||+|+..|+.+++++|++.+.+....+
T Consensus 65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 142 (299)
T 1s70_B 65 DINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142 (299)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 67888899999999999999999999999987 7888899999999999999999999999999876532211
Q ss_pred ---------------------------------------------------cccCCCchHHHHHHhcCCHHHHHHHHHcC
Q 031607 76 ---------------------------------------------------AVDEEGWAPIHSAASIGNVTIVEMLLSKG 104 (156)
Q Consensus 76 ---------------------------------------------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~ 104 (156)
..+..|.||||+|+..++.+++++|++.|
T Consensus 143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 222 (299)
T 1s70_B 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222 (299)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence 02346889999999999999999999999
Q ss_pred CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||++...
T Consensus 223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999763
No 15
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=5.4e-32 Score=169.65 Aligned_cols=139 Identities=23% Similarity=0.298 Sum_probs=91.1
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHh
Q 031607 11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90 (156)
Q Consensus 11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~ 90 (156)
.+|||.|+..|+++.+++|++.+ ...++.++..|+||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST 78 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence 35666666666666666666665 233555666666666666666666666666666655 45556666666666666
Q ss_pred cCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.|||+.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 141 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666653
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.3e-32 Score=182.21 Aligned_cols=114 Identities=28% Similarity=0.335 Sum_probs=67.0
Q ss_pred cCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccC-CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607 39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117 (156)
Q Consensus 39 ~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (156)
+..+..|.||||+|+..|+.+++++|++.+.+ ++..+. .|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus 152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 228 (282)
T 1oy3_D 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228 (282)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence 33444555555555555566666666655554 344443 36777777777777777777777777777777777777
Q ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
|++|+..++.+++++|+++|++++.+|..|.||++.+.
T Consensus 229 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred HHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 77777777777777777777777777777777776543
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.5e-32 Score=179.59 Aligned_cols=147 Identities=27% Similarity=0.338 Sum_probs=94.5
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
++..+..|.||||.|+..|+.+++++|++.+ ..+++.++..|.||||+|+..++.+++++|++.+.+ ++.++..|.
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~ 158 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGK 158 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSC
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCC
Confidence 4444555555555555555555555555544 124445555555566666655555666666555544 455566677
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 229 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777653
No 18
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=5e-32 Score=169.79 Aligned_cols=143 Identities=22% Similarity=0.268 Sum_probs=130.1
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
++..+..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 103 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGG 103 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence 5777889999999999999999999999988 78888999999999999999999999999999887 777889999
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccc
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH 150 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~ 150 (156)
||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++++++..++..|.||
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887
No 19
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=100.00 E-value=8.2e-33 Score=170.98 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=118.4
Q ss_pred ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (156)
Q Consensus 4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (156)
+..+..+.++||.|+..|+.+++++|++.+ .+++.++..|+||||+|+ .++.+++++|++.+.+ ++.++..|.|
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~t 79 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLT 79 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCc
Confidence 455678999999999999999999999987 788889999999999985 8999999999999877 7788889999
Q ss_pred -HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 84 -PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 84 -~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
|||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||...+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643
No 20
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=2.3e-31 Score=173.88 Aligned_cols=149 Identities=21% Similarity=0.198 Sum_probs=119.5
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhh---ccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD 78 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~ 78 (156)
|++..+..|.||||.|+..|+.+++++|++.+.... .+.++..|.||||+|+..|+.+++++|++.+.+ ++..+
T Consensus 29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~ 105 (232)
T 2rfa_A 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS---VSARA 105 (232)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCC
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC---CCccc
Confidence 567778888888888888888888888888773211 155667888888888888888888888888776 33333
Q ss_pred -------------CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHH----HHHHHcCCCC-
Q 031607 79 -------------EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKI- 140 (156)
Q Consensus 79 -------------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~Ll~~g~~~- 140 (156)
..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++ ++|+++|++.
T Consensus 106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 3688888888888888888888888888888888888888888888888877 8888888877
Q ss_pred -----CcccccccccccC
Q 031607 141 -----NSKDKACWLHSIA 153 (156)
Q Consensus 141 -----~~~~~~~~t~l~~ 153 (156)
+.+|..|.||||.
T Consensus 186 ~~~~~~~~~~~g~tpl~~ 203 (232)
T 2rfa_A 186 LKSLELVPNNQGLTPFKL 203 (232)
T ss_dssp SCCGGGCCCTTSCCHHHH
T ss_pred hhhhhccCCCCCCCHHHH
Confidence 4788888888874
No 21
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.98 E-value=3e-32 Score=164.92 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=126.0
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC-
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE- 80 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~- 80 (156)
|++..+..+.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+. ++.+++++|++.+.+ ++.++..
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~ 77 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPAT 77 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTT
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCC
Confidence 68889999999999999999999999999987 7888899999999999999 999999999999887 7778888
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~ 139 (156)
|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.98 E-value=1.5e-31 Score=174.61 Aligned_cols=146 Identities=32% Similarity=0.358 Sum_probs=134.1
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++..+..|.
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 107 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC 107 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCC
Confidence 4566788999999999999999999999987 67888899999999999999999999999998877 677788999
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||||+|+..++.+++++|++.|.+++.++..|.||+++|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 178 (231)
T 3aji_A 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.98 E-value=3.2e-31 Score=173.90 Aligned_cols=150 Identities=27% Similarity=0.343 Sum_probs=103.2
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhh--hhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-C
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-E 79 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~ 79 (156)
++..+..|.+|||.|+..|+.+++++|++.+.. .+++..+..|.||||+|+..++.+++++|++.+.+ ++..+ .
T Consensus 72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~ 148 (241)
T 1k1a_A 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIK 148 (241)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccccc
Confidence 344455555555555555555555555555411 13444555666666666666666666666666554 44444 5
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 80 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
.|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||++...
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 6778888888888888888888888888888888888888888888888888888888888888888888887653
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.98 E-value=2.3e-31 Score=174.37 Aligned_cols=147 Identities=32% Similarity=0.453 Sum_probs=98.3
Q ss_pred CCcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607 1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE 80 (156)
Q Consensus 1 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 80 (156)
+|++..+..|.||||.|+..|+.+++++|++++ .+++..+..|.||||+|+..|+.+++++|++.+.. ++..+..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~ 76 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE 76 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence 456667777777777777777777777777766 56666677777777777777777777777766655 4445556
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI 152 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 152 (156)
|.||||+|+..++.+++++|++.+ .+++.++..|.||+++|+..++.+++++|+++|++++.++..|.||||
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 149 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence 666666666666666666666665 555555556666666666666666666666666666666666666655
No 25
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=2.1e-31 Score=173.08 Aligned_cols=142 Identities=25% Similarity=0.314 Sum_probs=85.6
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+... .+..+..|.||||
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~ 97 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI 97 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHH
Confidence 455666666666666666666666665 455556666666666666666666666666554311 3444555556666
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI 152 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 152 (156)
+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.||||
T Consensus 98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 163 (223)
T 2f8y_A 98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163 (223)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHH
Confidence 666666666666666555555555555556666666655566666666556555555555555554
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=1.1e-31 Score=179.70 Aligned_cols=149 Identities=25% Similarity=0.312 Sum_probs=113.2
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccc-----------
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA----------- 71 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~----------- 71 (156)
++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+...
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 4555666667777777777777777777665 566666666777777777777777777776654321
Q ss_pred ---------------------------------cccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC-CCCcH
Q 031607 72 ---------------------------------NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA 117 (156)
Q Consensus 72 ---------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 117 (156)
..++.++..|.||||+|+..++.+++++|++.|++++.++. .|.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp 195 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence 01334566788899999999999999999999998888875 48899
Q ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 196 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 231 (282)
T 1oy3_D 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH
Confidence 999999999999999999999999999999999875
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.5e-31 Score=174.77 Aligned_cols=144 Identities=28% Similarity=0.310 Sum_probs=131.2
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--cccccCCCchHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--VNAVDEEGWAPIH 86 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~~~l~ 86 (156)
.|.||||.|++.|+.+++++|++.. +.+++.++..|+||||+|+..|+.+++++|++.+..... .+..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 5889999999999999999999982 378889999999999999999999999999998876321 1456778999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccCcC-------------CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 87 SAASIGNVTIVEMLLSKGADVNLKND-------------GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+|+..++.+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999888765 69999999999999999999999999999999999999985
No 28
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.98 E-value=1.7e-31 Score=174.96 Aligned_cols=148 Identities=26% Similarity=0.281 Sum_probs=103.1
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
++..+..|.+||+.|+..|+.+++++|++.+ +.+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.
T Consensus 70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~ 145 (237)
T 3b7b_A 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEEN 145 (237)
T ss_dssp CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCC
Confidence 4445555666666666666666666666654 234555566666666666666666666666666655 555666777
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
||||+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.+|..|.|||+..
T Consensus 146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp CHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 777777777777777777777777777777777788888777777777888777877777777787777653
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=4.1e-31 Score=171.74 Aligned_cols=148 Identities=27% Similarity=0.346 Sum_probs=139.4
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ ..+++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|
T Consensus 50 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g 125 (223)
T 2f8y_A 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLG 125 (223)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTS
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCC
Confidence 57778889999999999999999999999987 347788899999999999999999999999998877 77788899
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.+|..|.||++.
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 197 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 30
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=8.4e-32 Score=184.33 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=134.4
Q ss_pred Cccc-ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC---hHHHHHHHhhc-cccccccc
Q 031607 2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVD-ESANVVNA 76 (156)
Q Consensus 2 ~~~~-~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~---~~~~~~ll~~~-~~~~~~~~ 76 (156)
|+|. .+..|.||||.|+..|+.++|++|++++ ++++.++..|+||||+|+..|+ .++++.|++.+ .+ ++.
T Consensus 122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~---~~~ 196 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---LIL 196 (327)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---GGE
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc---ccC
Confidence 6788 7899999999999999999999999998 7889999999999999999998 67777777765 33 678
Q ss_pred ccCCCchHHHHHHh----cCCHHHHHHHHHcCC---------------------------------------------CC
Q 031607 77 VDEEGWAPIHSAAS----IGNVTIVEMLLSKGA---------------------------------------------DV 107 (156)
Q Consensus 77 ~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~---------------------------------------------~~ 107 (156)
++..|.||||+|+. .++.+++++|++.+. ++
T Consensus 197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~ 276 (327)
T 1sw6_A 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276 (327)
T ss_dssp ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence 89999999999999 899999999987632 47
Q ss_pred ccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 108 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
+.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||...
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 788889999999999999999999999999999999999999999753
No 31
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=7.1e-31 Score=172.25 Aligned_cols=150 Identities=23% Similarity=0.314 Sum_probs=122.7
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc-ccccccCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEE 80 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~ 80 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.... .++..+..
T Consensus 38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 115 (241)
T 1k1a_A 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115 (241)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence 46667777888888888888888888888876 6677777788888888888888888888887765210 15566778
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|.||||+|+..++.+++++|++.|++++.++ ..|.|||++|+..++.+++++|+++|++++.++..|.||||.
T Consensus 116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189 (241)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 8889999998899999999998888888877 678899999999999999999999999999999999999875
No 32
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.3e-31 Score=166.29 Aligned_cols=139 Identities=30% Similarity=0.413 Sum_probs=128.4
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
...++|+.|+..|+.+.+++|++.+ .+++.++..|+||||+|+. ++.+++++|++.+.+ ++.++..|.||||+|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVIHDA 77 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence 4678999999999999999999987 6788889999999999999 999999999998877 677888999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC-CCcccccccccccC
Q 031607 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACWLHSIA 153 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~ 153 (156)
+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++ ++.++..|.||||.
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~ 143 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999998 68999999999975
No 33
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=2.1e-31 Score=176.39 Aligned_cols=144 Identities=25% Similarity=0.307 Sum_probs=135.8
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
.+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+... ++..+..|.|||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L 128 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPL 128 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHH
Confidence 4778999999999999999999999987 788889999999999999999999999999887621 677788999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 196 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=5.6e-31 Score=171.54 Aligned_cols=148 Identities=26% Similarity=0.300 Sum_probs=127.1
Q ss_pred cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (156)
Q Consensus 5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (156)
..+..|.||||.|+..|+.+++++|++.+...+++. .+..|+||||+|+..|+.+++++|++.+.... ++..+..|.|
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t 109 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVT 109 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCC
Confidence 467788999999999999999999999874455555 77889999999999999999999998872211 6677888999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccccccC
Q 031607 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWLHSIA 153 (156)
Q Consensus 84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~ 153 (156)
|||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||.
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~ 180 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999874
No 35
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=179.61 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=137.3
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHH-----HcCChHHHHHHHhhcccccccccc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA-----SCGHPEVVEILLSVDESANVVNAV 77 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~-----~~~~~~~~~~ll~~~~~~~~~~~~ 77 (156)
+|..+..|.||||.|+..|+.+++++|++.+ ..+++..+..|+||||+|+ ..++.+++++|+..+.. .+..
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~ 179 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI---NAKA 179 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---TCCC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---cccc
Confidence 6788999999999999999999999999988 2378889999999999999 56789999999998866 5667
Q ss_pred cCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccccccccC
Q 031607 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACWLHSIA 153 (156)
Q Consensus 78 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~ 153 (156)
+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||.
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~ 256 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999 899999999999999985
No 36
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=174.28 Aligned_cols=150 Identities=24% Similarity=0.183 Sum_probs=96.1
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc---------
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN--------- 72 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~--------- 72 (156)
|+|..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+..
T Consensus 28 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 105 (261)
T 2xai_A 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 105 (261)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHH
Confidence 34445555555555555555555555555554 4444455555555555555555555555544433211
Q ss_pred --------------------ccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHH
Q 031607 73 --------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132 (156)
Q Consensus 73 --------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 132 (156)
.++.++..|.||||+|+..++.+++++|++.|++++. +..|.||||+|+..++.+++++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~ 184 (261)
T 2xai_A 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACL 184 (261)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHH
Confidence 0455566777777777777777777777777777764 6677788888888888888888
Q ss_pred HHHcCCCCCcccccccccccCC
Q 031607 133 LISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 133 Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
|+++|++++.+|..|.||++..
T Consensus 185 Ll~~gad~~~~d~~g~tpl~~A 206 (261)
T 2xai_A 185 LMDFGADTQAKNAEGKRPVELV 206 (261)
T ss_dssp HHHTTCCTTCCCTTSCCGGGGS
T ss_pred HHHcCCCCCCcCCCCCChhhhc
Confidence 8888888888888888888754
No 37
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.7e-31 Score=176.00 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=132.5
Q ss_pred Cccc----ccccCcHHHHHHHhc---CCHHHHHHHHHHHhhhhcc-----------CCCCCCchHHHHHHHcCChHHHHH
Q 031607 2 DMDI----DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLS-----------LRNDDDRTLLHVAASCGHPEVVEI 63 (156)
Q Consensus 2 ~~~~----~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~-----------~~~~~g~~~l~~A~~~~~~~~~~~ 63 (156)
|++. .+..|.||||.|+.. |+.+++++|++.+ .+.+ .+|..|.||||+|+..|+.+++++
T Consensus 31 ~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 108 (256)
T 2etb_A 31 YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108 (256)
T ss_dssp CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence 4565 788999999999999 9999999999998 3333 234679999999999999999999
Q ss_pred HHhhcccccccccccCC-------------CchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHH--CC
Q 031607 64 LLSVDESANVVNAVDEE-------------GWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAAS--KG 125 (156)
Q Consensus 64 ll~~~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~--~~ 125 (156)
|++.+.+ ++.++.. |.||||+|+..++.+++++|++ .|++++.++..|.||||+|+. .+
T Consensus 109 Ll~~ga~---~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~ 185 (256)
T 2etb_A 109 LVENGAD---VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185 (256)
T ss_dssp HHHTTCC---TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HHHcCCC---CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccC
Confidence 9999887 5555554 9999999999999999999999 999999999999999999999 78
Q ss_pred CHH-------HHHHHHHcCCCC-------CcccccccccccC
Q 031607 126 WLK-------IVELLISRGAKI-------NSKDKACWLHSIA 153 (156)
Q Consensus 126 ~~~-------~~~~Ll~~g~~~-------~~~~~~~~t~l~~ 153 (156)
+.+ ++++|+++|+++ +.+|..|.||||.
T Consensus 186 ~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~ 227 (256)
T 2etb_A 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred CchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence 888 999999999999 8999999999985
No 38
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=173.48 Aligned_cols=139 Identities=27% Similarity=0.319 Sum_probs=125.6
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
.|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNA 76 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHH
Confidence 5789999999999999999999987 78889999999999999999999999999999877 777888999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+..++.+++++|++.|++++.. ..|.||+++|+..|+.+++++|+++|++++.++..|.||||.
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 140 (261)
T 2xai_A 77 CVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140 (261)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 9999999999999999888754 458899999999999999999999999999999999999874
No 39
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=5.7e-31 Score=162.53 Aligned_cols=138 Identities=26% Similarity=0.348 Sum_probs=130.1
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHH
Q 031607 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (156)
Q Consensus 10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (156)
+.++|+.|+..|+.+.+++|++. .+.+++..+..|+||||+ +..|+.+++++|++.+.+ ++.++..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHH
Confidence 46899999999999999999998 356888899999999999 999999999999999877 7778899999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ ++++.+|..|.|||+.
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~ 139 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL 139 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHH
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999975
No 40
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=174.65 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=135.5
Q ss_pred ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (156)
Q Consensus 4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (156)
+..+..+.++|+.|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++.++..|.|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t 89 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---VNSPDSHGWT 89 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCC
Confidence 345667889999999999999999999987 68888999999999999999999999999999887 7788899999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHH--HHCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 84 PIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
|||+|+..++.+++++|++.|++++.++ ..|.|||++| +..++.+++++|+++|++++.+|..|.||++..
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~ 163 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCB
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHH
Confidence 9999999999999999999999999986 5999999999 999999999999999999999999999998854
No 41
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=173.45 Aligned_cols=150 Identities=23% Similarity=0.178 Sum_probs=99.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccc---------
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN--------- 72 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~--------- 72 (156)
|++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|++.+.+..
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 161 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHH
Confidence 34455555555555555555555555555554 4444455555555555555555555555544433211
Q ss_pred --------------------ccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHH
Q 031607 73 --------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132 (156)
Q Consensus 73 --------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 132 (156)
.++.++..|.||||+|+..++.+++++|++.|++++. +..|.|||++|+..++.+++++
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL 240 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence 0455667778888888888888888888888877774 6677888888888888888888
Q ss_pred HHHcCCCCCcccccccccccCC
Q 031607 133 LISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 133 Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
|+++|++++.+|..|.|||+..
T Consensus 241 Ll~~gad~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 241 LMDFGADTQAKNAEGKRPVELV 262 (285)
T ss_dssp HHHTTCCTTCCCTTSCCGGGGS
T ss_pred HHHCCCCCCCcCCCCCCHHHHh
Confidence 8888888888888888888765
No 42
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=174.28 Aligned_cols=145 Identities=26% Similarity=0.306 Sum_probs=128.4
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (156)
++.++..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++.++..|.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~ 126 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWH 126 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCC
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCC
Confidence 4557788999999999999999999999987 67888899999999999999999999999999877 677788899
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 83 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|||++|+..++.+++++|++.|++++..+ .|.|||++|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 196 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999888877544 47888888888888888888888888888888888888874
No 43
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=1.9e-30 Score=183.50 Aligned_cols=147 Identities=31% Similarity=0.397 Sum_probs=127.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.|||+.|+..|+.+++++|++++ .+.+..+..|.||||+|+..|+.+++++|++.+.. ++.++..|
T Consensus 237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g 311 (437)
T 1n11_A 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMG 311 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCC
Confidence 45666777888888888888888888888876 66777788888888888888888888888888776 67778889
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus 312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 383 (437)
T 1n11_A 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383 (437)
T ss_dssp CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 44
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=4.8e-30 Score=176.26 Aligned_cols=150 Identities=27% Similarity=0.275 Sum_probs=94.7
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc--------
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------- 73 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~-------- 73 (156)
|++..+..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.+...
T Consensus 83 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 45555666666666666666666666666665 55556666666666666666666666666665443210
Q ss_pred -------------------------------------------------------------------------------c
Q 031607 74 -------------------------------------------------------------------------------V 74 (156)
Q Consensus 74 -------------------------------------------------------------------------------~ 74 (156)
+
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~ 240 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence 2
Q ss_pred ccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 75 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+.++..|.||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.||++.
T Consensus 241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~ 319 (351)
T 3utm_A 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319 (351)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhh
Confidence 2344556666666666666666666666666666666666666666666666666666666666666666666666653
No 45
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.9e-30 Score=179.75 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=94.8
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccc---------
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------- 73 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~--------- 73 (156)
.+..+..|.|+||.|+..|++++|++|++.+ .+++.++..|.||||+|+..|+.+++++|++.+.....
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 4445555666666666666666666666655 45555566666666666666666666666655442111
Q ss_pred -----------------------ccc-----------------ccCCCchHHHHHHhcC--CHHHHHHHHHcCCCCccCc
Q 031607 74 -----------------------VNA-----------------VDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKN 111 (156)
Q Consensus 74 -----------------------~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~~~ 111 (156)
.+. .+..|.||||+|+..+ +.+++++|++.|++++.++
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence 111 4556777777777777 7777777777777777777
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHHcCCC-----CCcccccccccccC
Q 031607 112 DGGRTALHYAASKGWLKIVELLISRGAK-----INSKDKACWLHSIA 153 (156)
Q Consensus 112 ~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~~ 153 (156)
..|.|||++|+..|+.+++++|+++|++ ++.++..|.||||.
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~ 217 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence 7777777777777777777777777776 77777777777764
No 46
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=6.9e-30 Score=175.48 Aligned_cols=147 Identities=32% Similarity=0.357 Sum_probs=125.0
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g 124 (351)
T 3utm_A 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ 124 (351)
T ss_dssp TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence 56778889999999999999999999999987 78888999999999999999999999999999877 67778889
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCC------------------------------------------------------
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADV------------------------------------------------------ 107 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~------------------------------------------------------ 107 (156)
.||||+|+..++.+++++|++.|+++
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 99999999988888888887765543
Q ss_pred ------------------------------------ccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607 108 ------------------------------------NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHS 151 (156)
Q Consensus 108 ------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l 151 (156)
+.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L 284 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 34455677788888888888888888888888888888888887
Q ss_pred cC
Q 031607 152 IA 153 (156)
Q Consensus 152 ~~ 153 (156)
|.
T Consensus 285 ~~ 286 (351)
T 3utm_A 285 HR 286 (351)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 47
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.97 E-value=1.3e-29 Score=151.00 Aligned_cols=126 Identities=41% Similarity=0.606 Sum_probs=119.5
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
.|.|+|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHHHH
Confidence 4789999999999999999999987 67888899999999999999999999999998877 677888999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~ 139 (156)
+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus 76 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999985
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.1e-30 Score=171.73 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=125.9
Q ss_pred cCcHHHHHHHhcCCHHHH----HHHHHHHhhhhccC----CCCCCchHHHHHHHc---CChHHHHHHHhhcccccccc--
Q 031607 9 IKDKDLFKAAETGDSSTF----KSLSKQQLLKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN-- 75 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v----~~ll~~~~~~~~~~----~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~-- 75 (156)
+|.|+||.|+..|+.+.| ++|++.+ .+++. ++..|+||||+|+.. |+.+++++|++.+.......
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 588999999999999855 5555565 67776 799999999999999 99999999999877632111
Q ss_pred ------cccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCC-------------CCcHHHHHHHCCCHHHHHHHHH-
Q 031607 76 ------AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS- 135 (156)
Q Consensus 76 ------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~- 135 (156)
..+..|.||||+|+..++.+++++|++.|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 23467999999999999999999999999999998876 9999999999999999999999
Q ss_pred --cCCCCCcccccccccccC
Q 031607 136 --RGAKINSKDKACWLHSIA 153 (156)
Q Consensus 136 --~g~~~~~~~~~~~t~l~~ 153 (156)
+|++++.+|..|+||||.
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~ 178 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHA 178 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHH
T ss_pred cccCCCcCccCCCCCCHHHH
Confidence 999999999999999985
No 49
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.7e-30 Score=180.00 Aligned_cols=110 Identities=20% Similarity=0.342 Sum_probs=100.8
Q ss_pred CCCCCchHHHHHHHcC--ChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCC-----CccCcCC
Q 031607 41 RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDG 113 (156)
Q Consensus 41 ~~~~g~~~l~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~ 113 (156)
.+..|.||||+|+..| +.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++ ++.++..
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence 5667899999999999 89999999998877 677888999999999999999999999999888 8999999
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 250 (364)
T 3ljn_A 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250 (364)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999975
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=5.1e-30 Score=164.14 Aligned_cols=143 Identities=23% Similarity=0.300 Sum_probs=132.8
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..+.++|+.|+..|+.+.+++++..+ +.+++..+..|+||||+|+..|+.+++++|++.+.+ ++..+..|.||||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~ 77 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYL 77 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHH
Confidence 356889999999999999999999987 357888999999999999999999999999999887 6778889999999
Q ss_pred HHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccccccC
Q 031607 87 SAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWLHSIA 153 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~ 153 (156)
+|+..++.+++++|++ .+.+++.++..|.|||++|+..++.+++++|+++| ++++.++..|.||||.
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 146 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHH
Confidence 9999999999999994 57789999999999999999999999999999999 9999999999999985
No 51
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.97 E-value=7.5e-30 Score=154.31 Aligned_cols=127 Identities=34% Similarity=0.494 Sum_probs=118.2
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
....+.++||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|.|||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L 84 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPL 84 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHH
Confidence 3456899999999999999999999987 78888999999999999999999999999999877 777888999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g 137 (156)
|+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999876
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.3e-30 Score=173.06 Aligned_cols=143 Identities=24% Similarity=0.202 Sum_probs=128.4
Q ss_pred ccCcHHHHHHH---hcCCHHHHHHHHHHHhh---------hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccc
Q 031607 8 TIKDKDLFKAA---ETGDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN 75 (156)
Q Consensus 8 ~~~~~~l~~a~---~~~~~~~v~~ll~~~~~---------~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~ 75 (156)
..|.||||.|+ ..|+.+++++|++.+.. ..+...+..|+||||+|+..|+.+++++|++.+.+ ++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~ 120 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD---VH 120 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC---TT
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC---cC
Confidence 66999999999 77999999999998732 22444566899999999999999999999999887 55
Q ss_pred ccc--------------CCCchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHHCCC---------HHH
Q 031607 76 AVD--------------EEGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------LKI 129 (156)
Q Consensus 76 ~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~ 129 (156)
..+ ..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..++ .++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 555 579999999999999999999999 899999999999999999998877 799
Q ss_pred HHHHHHcCCCC-------CcccccccccccC
Q 031607 130 VELLISRGAKI-------NSKDKACWLHSIA 153 (156)
Q Consensus 130 ~~~Ll~~g~~~-------~~~~~~~~t~l~~ 153 (156)
+++|+++|+++ +.+|..|.||||.
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~ 231 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHHH
Confidence 99999999999 6799999999985
No 53
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=3e-30 Score=173.60 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=104.1
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.. +|+||||+|+..|+.+++++|++.+.+ ++.++..|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g 95 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKG 95 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCC
Confidence 46677778888888888888888888888876 555554 377888888888888888888877766 55667777
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCC-CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..++.+++++|++.|++++.++..| .|||++|+..|+.+++++|+++|++.... ..|.||||.
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~ 167 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHI 167 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHH
Confidence 788888887778888887777777777777766 57777777776666666666666655222 266666653
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=5.5e-30 Score=158.93 Aligned_cols=132 Identities=27% Similarity=0.376 Sum_probs=123.0
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+. |+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 103 (162)
T 1ihb_A 30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEG 103 (162)
T ss_dssp CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred CccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence 577888999999999999 9999999999987 78888999999999999999999999999999877 77888999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCC-CccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~ 139 (156)
.||||+|+..++.+++++|++.|++ ++.++..|.||+++|+..++.+++++|+++|++
T Consensus 104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999987 589999999999999999999999999999985
No 55
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=2e-29 Score=157.64 Aligned_cols=131 Identities=34% Similarity=0.446 Sum_probs=123.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
|+|..+..|.|+||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g 113 (169)
T 2y1l_E 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEG 113 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCC
Confidence 67888899999999999999999999999987 78888999999999999999999999999999887 77788899
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g 137 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|
T Consensus 114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999876
No 56
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=3.7e-30 Score=162.33 Aligned_cols=141 Identities=28% Similarity=0.315 Sum_probs=132.6
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g 105 (179)
T 3f6q_A 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHG 105 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCC
Confidence 57788899999999999999999999999997 78888999999999999999999999999999887 77888999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccc
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 147 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++..+..+
T Consensus 106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999998766443
No 57
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=173.62 Aligned_cols=146 Identities=24% Similarity=0.344 Sum_probs=112.3
Q ss_pred cccccccCcHHHHHHHhcCCHH-HHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 3 MDIDQTIKDKDLFKAAETGDSS-TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~-~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
++..+..+.+||+.|+..+..+ .++.|++.+ .+++.+|.+|+||||+|+..|+.+++++|+..+.+ ++..+..|
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g 119 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQ 119 (269)
T ss_dssp ------------------------------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTC
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCC
Confidence 3455677899999999988765 678888887 78899999999999999999999999999999887 67788899
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||++.|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+++++|+++|++++.++..|.||||.
T Consensus 120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~ 191 (269)
T 4b93_B 120 AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191 (269)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 58
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=8.6e-30 Score=180.10 Aligned_cols=146 Identities=30% Similarity=0.354 Sum_probs=86.7
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|++++|++|++++ .+++.++..|.||||+|+..|+.+++++|++.+.+ ++.++..|
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g 80 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDD 80 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTS
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCC
Confidence 34555666666666666666666666666665 45556666666666666666666666666666555 45555666
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccccc
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSI 152 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~ 152 (156)
.||||+|+..|+.+++++|++.|++++.++..|.|||++|+..|+.+++++|++++++.+..+..|.||||
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 151 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH
Confidence 66666666666666666666666666666655666666666666666656655555555555555555554
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.9e-30 Score=170.42 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=128.9
Q ss_pred ccccCcHHHHHHHhc---CCHHHHHHHHHHHhhh-----hccC----CCCCCchHHHHHHHcCChHHHHHHHhhcccccc
Q 031607 6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLK-----SLSL----RNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~-----~~~~----~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~ 73 (156)
.+..|.||||.|+.. |+.+++++|++.+... .++. .+..|+||||+|+..|+.+++++|++.+.+
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--- 126 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD--- 126 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence 467899999999987 9999999999997321 0222 567899999999999999999999999887
Q ss_pred cccccC--------------CCchHHHHHHhcCCHHHHHHHHH---cCCCCccCcCCCCcHHHHHHHCCC---------H
Q 031607 74 VNAVDE--------------EGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------L 127 (156)
Q Consensus 74 ~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~ 127 (156)
++.++. .|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++ .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 555554 79999999999999999999999 899999999999999999999888 7
Q ss_pred HHHHHHHHcCCCCC-------cccccccccccC
Q 031607 128 KIVELLISRGAKIN-------SKDKACWLHSIA 153 (156)
Q Consensus 128 ~~~~~Ll~~g~~~~-------~~~~~~~t~l~~ 153 (156)
+++++|+++|++++ .+|..|+||||.
T Consensus 207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence 99999999999997 499999999985
No 60
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=3.3e-30 Score=169.40 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=96.9
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
...|.|||+.|++.++.+.++.|++++ .+++. +..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALH 75 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHH
Confidence 456889999999999999999999988 45554 46789999999999999999999988876 6778889999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccc-ccccCC
Q 031607 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACW-LHSIAP 154 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~~~ 154 (156)
+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||||..
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877 998865
No 61
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-29 Score=170.96 Aligned_cols=141 Identities=34% Similarity=0.503 Sum_probs=129.9
Q ss_pred ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHH
Q 031607 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87 (156)
Q Consensus 8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~ 87 (156)
..+.++|+.|+..|+++.|++|++.+ .+++..+..|.||||+||..|+.+++++|++.+.+ ++..+..|.||||+
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~ 112 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHA 112 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHH
Confidence 45789999999999999999999988 77888899999999999999999999999999887 77788899999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccCcC-------------------------------------------------------
Q 031607 88 AASIGNVTIVEMLLSKGADVNLKND------------------------------------------------------- 112 (156)
Q Consensus 88 a~~~~~~~~~~~l~~~~~~~~~~~~------------------------------------------------------- 112 (156)
|+..++.+++++|++.|++++.++.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999988766543
Q ss_pred -----CCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 113 -----GGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 113 -----~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~ 238 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 46788999999999999999999999999999999999985
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2e-29 Score=157.21 Aligned_cols=135 Identities=24% Similarity=0.306 Sum_probs=127.0
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 102 (167)
T 3v31_A 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNG 102 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTS
T ss_pred CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCcCCCCC
Confidence 56788899999999999999999999999987 78888899999999999999999999999999887 77788999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~ 141 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..|+.+++++|++++.++.
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876654
No 63
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=163.36 Aligned_cols=148 Identities=24% Similarity=0.293 Sum_probs=131.6
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
|++..+..+.++|+.|+..|+.+.+++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+... ....+..|
T Consensus 1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~ 76 (240)
T 3eu9_A 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLN 76 (240)
T ss_dssp -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTT
T ss_pred CccccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcC
Confidence 45667788999999999999999999999987 678888899999999999999999999999988763 22344568
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.|||++|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.++..|.||||.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~ 148 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 64
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=1.8e-29 Score=165.44 Aligned_cols=150 Identities=23% Similarity=0.224 Sum_probs=136.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhh----hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccc
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL----KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV 77 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~----~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~ 77 (156)
|++..+..|.||||.|+..|+.+++++|++.+.. ..++..+..|.||||+|+..|+.+++++|++.+.+ ++.+
T Consensus 70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~ 146 (236)
T 1ikn_D 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQ 146 (236)
T ss_dssp CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCC
Confidence 5778889999999999999999999999998731 22567788999999999999999999999999887 6777
Q ss_pred cC-CCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCC--cccccccccccCC
Q 031607 78 DE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--SKDKACWLHSIAP 154 (156)
Q Consensus 78 ~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~~~t~l~~~ 154 (156)
+. .|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++.. .++..+.||....
T Consensus 147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 76 89999999999999999999999999999999999999999999999999999999999876 8889999987653
No 65
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=9.5e-30 Score=170.03 Aligned_cols=151 Identities=24% Similarity=0.292 Sum_probs=127.9
Q ss_pred cccccccCcHHHHHHHhcCCHHHHHHHHHHHhh--hhcc----CCCCCCchHHHHHHHc---CChHHHHHHHhhcccccc
Q 031607 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLS----LRNDDDRTLLHVAASC---GHPEVVEILLSVDESANV 73 (156)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~--~~~~----~~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~ 73 (156)
.+..+..|.++||.|++.|++++|+.|++.+.. .+++ ..+..|+||||+|+.. |+.+++++|++.+.....
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 345678899999999999999999999987532 2222 3478999999999987 999999999998754211
Q ss_pred --------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcC--------------CCCcHHHHHHHCCCHHHHH
Q 031607 74 --------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND--------------GGRTALHYAASKGWLKIVE 131 (156)
Q Consensus 74 --------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~ 131 (156)
....+..|.||||+|+..++.+++++|++.|++++.++. .|.||||+|+..|+.++++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 122566899999999999999999999999999999887 7999999999999999999
Q ss_pred HHHH---cCCCCCcccccccccccC
Q 031607 132 LLIS---RGAKINSKDKACWLHSIA 153 (156)
Q Consensus 132 ~Ll~---~g~~~~~~~~~~~t~l~~ 153 (156)
+|++ +|++++.+|..|+||||.
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~ 190 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHA 190 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred HHHhcccCCCCceeeCCCCCcHHHH
Confidence 9999 999999999999999985
No 66
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=6.4e-29 Score=166.22 Aligned_cols=141 Identities=28% Similarity=0.401 Sum_probs=79.3
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..|.||||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.|||+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~ 110 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM 110 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence 444556666666666666666666655 44555555566666666666666666666655544 4444555555555
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccC----------cCCCCcHHHHHHHCCCHHHHHHHHHc-CCCCCccccccccccc
Q 031607 87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACWLHSI 152 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~ 152 (156)
+|+..++.+++++|++.|++++.+ +..|.|||++|+..++.+++++|+++ |++++.++..|.||||
T Consensus 111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~ 187 (285)
T 1wdy_A 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence 555555555555555555555444 34455555555555555555555554 5555555555555554
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=6.7e-29 Score=158.09 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=124.1
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 134 (192)
T 2rfm_A 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG--SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEG 134 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTC
T ss_pred ccccccccCccHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCC
Confidence 56778889999999999999999999999998 78888999999999999999999999999999887 77888999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g 137 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|
T Consensus 135 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999865
No 68
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=6.3e-30 Score=172.06 Aligned_cols=139 Identities=18% Similarity=0.158 Sum_probs=116.4
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC-chHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHS 87 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~l~~ 87 (156)
.|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++.+.+ ++..+..| .||||+
T Consensus 61 ~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 61 ENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYH 135 (285)
T ss_dssp TTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHH
Confidence 5788999999999999999998887 67778888889999999999999999999888777 66777778 789999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccccccc-ccC
Q 031607 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLH-SIA 153 (156)
Q Consensus 88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~ 153 (156)
|+..++.+++++|++.|.+.... ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||.
T Consensus 136 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~ 201 (285)
T 3kea_A 136 AVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 201 (285)
T ss_dssp HHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHH
T ss_pred HHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHH
Confidence 98888999999888887765322 267888999998888899999988888888888888887 663
No 69
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.4e-28 Score=164.62 Aligned_cols=144 Identities=31% Similarity=0.364 Sum_probs=75.6
Q ss_pred ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC----------CCCCchHHHHHHHcCChHHHHHHHhh-ccccc
Q 031607 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR----------NDDDRTLLHVAASCGHPEVVEILLSV-DESAN 72 (156)
Q Consensus 4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~----------~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~ 72 (156)
+..+..|.|||+.|+..|+.+++++|++.+ .+++.. +..|.||||+|+..++.+++++|++. +.+
T Consensus 99 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-- 174 (285)
T 1wdy_A 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-- 174 (285)
T ss_dssp TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC--
T ss_pred CccCcccCCHHHHHHHhCCHHHHHHHHHhC--CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC--
Confidence 333444444444444444444444444443 222222 33444455555555555555555443 333
Q ss_pred ccccccCCCchHHHHHHhcCC----HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHH-cCCCCCcccccc
Q 031607 73 VVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKAC 147 (156)
Q Consensus 73 ~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~ 147 (156)
++..+..|.||+|+|+..++ .+++++|++.|++++.++..|.||||+|+..++.+++++|++ .|++++.+|..|
T Consensus 175 -~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g 253 (285)
T 1wdy_A 175 -VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253 (285)
T ss_dssp -TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred -CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence 34445555555555555555 555555555555555555566666666666666666666666 566666666666
Q ss_pred ccccc
Q 031607 148 WLHSI 152 (156)
Q Consensus 148 ~t~l~ 152 (156)
.||||
T Consensus 254 ~t~l~ 258 (285)
T 1wdy_A 254 KTALL 258 (285)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 66655
No 70
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=5.2e-29 Score=173.20 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=98.0
Q ss_pred cccccCcHHHHHHHhcCCHHHHHHHHHHHh-hhhccCCCCCCchHHHHHHHcC---ChHHHHHHHhhcccccc-----cc
Q 031607 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQL-LKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV-----VN 75 (156)
Q Consensus 5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~-~~~~~~~~~~g~~~l~~A~~~~---~~~~~~~ll~~~~~~~~-----~~ 75 (156)
..+..|.||||.|+..|+.+++++|++.+. ..+++..+..|.||||+|+..+ +.+++++|++.+.+... .+
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 273 (373)
T 2fo1_E 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273 (373)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence 333344444444444444444444444320 1344444555555555555554 45555555555544221 11
Q ss_pred cccCCCchHHHHHHhcCCHHHHHHHHHcC-CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 76 AVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 76 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
..+..|.||||+|+..++.+++++|++.+ ++++.++..|.|||++|+..|+.+++++|+++|++++.+|..|.|||+.
T Consensus 274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~ 352 (373)
T 2fo1_E 274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352 (373)
T ss_dssp SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence 24557888888888888888888888775 8888888888899999999999999999999999999999999998874
No 71
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=3e-29 Score=174.43 Aligned_cols=150 Identities=23% Similarity=0.290 Sum_probs=136.3
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
|+|..+..|.||||.|+..|+.++|++|++.+ ++++.++..|.||||+|+..|+.+++++|++.+.....++..+..|
T Consensus 158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence 67888999999999999999999999999988 7888999999999999999999999999998762111267788999
Q ss_pred chHHHHHHhcC---CHHHHHHHHHcCCCCcc--------CcCCCCcHHHHHHHCCCHHHHHHHHHcC-CCCCcccccccc
Q 031607 82 WAPIHSAASIG---NVTIVEMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACWL 149 (156)
Q Consensus 82 ~~~l~~a~~~~---~~~~~~~l~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t 149 (156)
.|+||+|+..+ +.+++++|++.|++++. ++..|.||||+|+..|+.+++++|++++ ++++.+|..|.|
T Consensus 236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 99999999987 89999999999998876 5668999999999999999999999886 999999999999
Q ss_pred cccC
Q 031607 150 HSIA 153 (156)
Q Consensus 150 ~l~~ 153 (156)
|||.
T Consensus 316 pL~~ 319 (373)
T 2fo1_E 316 PIML 319 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.6e-29 Score=155.79 Aligned_cols=131 Identities=30% Similarity=0.351 Sum_probs=120.5
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 108 (165)
T 3twr_A 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWK 108 (165)
T ss_dssp TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred CccccccCCCCHHHHHHHcChHHHHHHHHhcC--CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC---CCCcCCCC
Confidence 35566677889999999999999999999988 78888999999999999999999999999999887 77788999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~ 138 (156)
.||||+|+..++.+++++|++.|++++.++..|.||+++|.. ++.+++++|+++|+
T Consensus 109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999999999999999999999999999877 89999999999885
No 73
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.7e-29 Score=165.99 Aligned_cols=145 Identities=26% Similarity=0.294 Sum_probs=125.6
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHH----HHhhhhccCCC----CCCchHHHHHH---HcCChHHHHHHHhhcccccc--
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSK----QQLLKSLSLRN----DDDRTLLHVAA---SCGHPEVVEILLSVDESANV-- 73 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~----~~~~~~~~~~~----~~g~~~l~~A~---~~~~~~~~~~ll~~~~~~~~-- 73 (156)
+.++.++||.|++.|+.+.++.|++ .+ .+++..+ ..|+||||+|+ ..|+.+++++|++.+.....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 4678999999999999997777766 54 4555443 67999999999 67999999999998754211
Q ss_pred ------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc--------------CCCCcHHHHHHHCCCHHHHHHH
Q 031607 74 ------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELL 133 (156)
Q Consensus 74 ------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~L 133 (156)
....+..|.||||+|+..++.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 33445689999999999999999999999999999988 5799999999999999999999
Q ss_pred HH---cCCCCCcccccccccccC
Q 031607 134 IS---RGAKINSKDKACWLHSIA 153 (156)
Q Consensus 134 l~---~g~~~~~~~~~~~t~l~~ 153 (156)
++ +|++++.+|..|+||||.
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~ 182 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHA 182 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHH
T ss_pred HhccccCCCCcccCCCCCcHHHH
Confidence 99 999999999999999985
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=3.1e-28 Score=150.22 Aligned_cols=128 Identities=24% Similarity=0.335 Sum_probs=121.0
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
+++..+..|.||||. +..|+.+++++|++.+ .+++.++..|.||||+|+..|+.+++++|++.+.+ ++.++..|
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 101 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTG 101 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTS
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCC
Confidence 678888999999999 9999999999999987 78889999999999999999999999999999877 77788899
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 136 (156)
.||||+|+..++.+++++|++. ++++.++..|.||+++|+..|+.+++++|+++
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999 99999999999999999999999999999875
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=5.6e-28 Score=148.74 Aligned_cols=123 Identities=33% Similarity=0.389 Sum_probs=116.4
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHH
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI 85 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l 85 (156)
.+..|.||||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|.|||
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L 104 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTAL 104 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC---CCCCCCCCCCHH
Confidence 4667999999999999999999999987 77888999999999999999999999999999877 777889999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHH
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 133 (156)
|+|+..++.+++++|++.|++++.++..|.||+++|+..|+.+++++|
T Consensus 105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999987
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=6e-29 Score=163.40 Aligned_cols=139 Identities=27% Similarity=0.398 Sum_probs=125.9
Q ss_pred ccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHH
Q 031607 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87 (156)
Q Consensus 8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~ 87 (156)
..+.++||.|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.+.+ ++.++..|.||||+
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~ 109 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHC 109 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHH
T ss_pred chhhHHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence 56789999999999999999999988 68899999999999999999999999999999887 78889999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccCcCCCC-cHHHHH--HHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607 88 AASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYA--ASKGWLKIVELLISRGAKINSKDKACWLHS 151 (156)
Q Consensus 88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l 151 (156)
|+..++.+++++|+++|++++.++..+. ||+++| +..|+.+++++|+++|++++..+..+.+++
T Consensus 110 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al 176 (239)
T 1ycs_B 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176 (239)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEES
T ss_pred HHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEE
Confidence 9999999999999999999999998777 999999 778999999999999999988765544433
No 77
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.96 E-value=3.1e-29 Score=162.98 Aligned_cols=140 Identities=24% Similarity=0.295 Sum_probs=114.7
Q ss_pred cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhh-cccccccccccCCCch
Q 031607 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWA 83 (156)
Q Consensus 5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~ 83 (156)
..+..|.|+||.|+..|+.+++++|++.+ .+++.++..|+||||+||..|+.+++++|++. +.+ ++.++..|.|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~t 142 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDT 142 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCC
T ss_pred ccccccccccccccccCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCC
Confidence 34567899999999999999999999987 78888999999999999999999999999988 666 7788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccc
Q 031607 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWL 149 (156)
Q Consensus 84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t 149 (156)
|||+|+..++.+++++|++.|++++.++..|.||+++|+..+..++++.|++.|+.....+..++.
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l 208 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999888877653
No 78
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=158.22 Aligned_cols=147 Identities=27% Similarity=0.304 Sum_probs=85.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCC
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE 80 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 80 (156)
|++..+..|.+||+.|+..|+.+++++|++.+ .+.+. .+..|.||||+|+..++.+++++|++.+.+ ++..+..
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~ 108 (240)
T 3eu9_A 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGE 108 (240)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCC
Confidence 34445555555555555555555555555554 22221 223355555555555555555555555444 3334444
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcC----------------------------------CCCccCcC-CCCcHHHHHHHCC
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKG----------------------------------ADVNLKND-GGRTALHYAASKG 125 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~-~~~~~l~~a~~~~ 125 (156)
|.|||+.|+..++.+++++|++.| ++++..+. .|.|||++|+..+
T Consensus 109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence 555555555555555555555544 44444444 5667777777778
Q ss_pred CHHHHHHHHHcCCCCCcccccccccccC
Q 031607 126 WLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+.+++++|+++|++++.++..|.||++.
T Consensus 189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 216 (240)
T 3eu9_A 189 NTTVISLLLEAGANVDAQNIKGESALDL 216 (240)
T ss_dssp CHHHHHHHHHHTCCTTCBCTTSCBHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 8888888888888888888888888764
No 79
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=2.1e-29 Score=159.76 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=115.8
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCC-CCCchHHHHHHHcCCh----HHHHHHHhhcccccccccccCCCchH
Q 031607 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAP 84 (156)
Q Consensus 10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~g~~~l~~A~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~ 84 (156)
+.++|+.|++.|+++.++.++..+ .+..+ ..|+||||+|+..++. +++++|++.|.+ ++.++..|+||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~Tp 78 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTTL 78 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCCcH
Confidence 456899999999999998888765 34444 6799999999998875 489999998888 77888899999
Q ss_pred HHHHHhcCC------HHHHHHHHHcCCCCccCcCCCC-cHHHHHHHCC-----CHHHHHHHHH-cCCCCCcccccccccc
Q 031607 85 IHSAASIGN------VTIVEMLLSKGADVNLKNDGGR-TALHYAASKG-----WLKIVELLIS-RGAKINSKDKACWLHS 151 (156)
Q Consensus 85 l~~a~~~~~------~~~~~~l~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~t~l 151 (156)
||+|+..++ .+++++|++.|++++.+|..|. ||||+|+..+ ..+++++|++ +|++++.+|..|.|||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 999998876 5789999999999999999999 9999999854 3468899999 8999999999999998
Q ss_pred cC
Q 031607 152 IA 153 (156)
Q Consensus 152 ~~ 153 (156)
|.
T Consensus 159 ~~ 160 (186)
T 3t8k_A 159 EF 160 (186)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=3.9e-29 Score=151.28 Aligned_cols=127 Identities=28% Similarity=0.340 Sum_probs=74.7
Q ss_pred cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP 84 (156)
Q Consensus 5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 84 (156)
.++..|.|+||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|.||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~ 79 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSP 79 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCH
Confidence 34555666666666666666666666654 45555566666666666666666666666655554 44555556666
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc
Q 031607 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136 (156)
Q Consensus 85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 136 (156)
||+|+..++.+++++|++.|++++.++..|.||+++|+..+..+++++|.+.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 6666666666666666666666666666666666666655555555554443
No 81
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=1.5e-27 Score=163.62 Aligned_cols=142 Identities=30% Similarity=0.436 Sum_probs=117.2
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCC-CCchHHHHHHHcCChHHHHHHHhhcccccc--------------
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANV-------------- 73 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~-------------- 73 (156)
.+.|+|+.|++.|++++|++|+++| ++++.++. .|+||||+||..|+.+++++|++++.....
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 4688999999999999999999988 77777764 589999999999999999999988765321
Q ss_pred ----------------cccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccC----------cCCCCcHHHHHHHCCCH
Q 031607 74 ----------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWL 127 (156)
Q Consensus 74 ----------------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~a~~~~~~ 127 (156)
++.++..|.||+++|+..++.++++++++.|++++.+ +..|.|||++|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 3456677888999999999999999888888776543 33577899999998888
Q ss_pred HHHHHHHH-cCCCCCccccccccccc
Q 031607 128 KIVELLIS-RGAKINSKDKACWLHSI 152 (156)
Q Consensus 128 ~~~~~Ll~-~g~~~~~~~~~~~t~l~ 152 (156)
+++++|++ .|++++.++..|.||++
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~ 207 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALI 207 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHH
Confidence 88888886 48888888888888875
No 82
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=2e-27 Score=143.73 Aligned_cols=115 Identities=34% Similarity=0.444 Sum_probs=108.2
Q ss_pred hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCc
Q 031607 37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116 (156)
Q Consensus 37 ~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (156)
+. .++..|+||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus 3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78 (137)
T ss_dssp -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence 44 6788999999999999999999999999877 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 117 ALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 117 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
|||+|+..++.+++++|+++|++++.+|..|.||++...
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 999999999999999999999999999999999999753
No 83
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=159.94 Aligned_cols=135 Identities=20% Similarity=0.199 Sum_probs=122.4
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHhhhhccC------CCCCCchHHHHHHHc---CChHHHHHHHhhcccccccccccCC
Q 031607 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEE 80 (156)
Q Consensus 10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~ 80 (156)
..++|+.|+..|+++.+++|++.+ .+++. .+..|+||||+|+.. ++.+++++|+.++.+ ++.++..
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~ 225 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD 225 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTT
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCC
Confidence 457899999999999999999887 56665 588999999999997 899999999999887 7788999
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++ .|.||||...
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~ 294 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDY 294 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC---
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 5889999753
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=3.3e-28 Score=154.29 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=120.4
Q ss_pred ccccc-ccCcHHHHHHHhcCCH----HHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCC------hHHHHHHHhhcccc
Q 031607 3 MDIDQ-TIKDKDLFKAAETGDS----STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH------PEVVEILLSVDESA 71 (156)
Q Consensus 3 ~~~~~-~~~~~~l~~a~~~~~~----~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~------~~~~~~ll~~~~~~ 71 (156)
++..+ ..|.||||.|+..|+. +++++|+++| ++++.++..|+||||+|+..++ .+++++|++.|.+
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad- 106 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD- 106 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-
Confidence 34444 6799999999999985 4899999988 8999999999999999999987 5789999999988
Q ss_pred cccccccCCCc-hHHHHHHhcC-----CHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc
Q 031607 72 NVVNAVDEEGW-APIHSAASIG-----NVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144 (156)
Q Consensus 72 ~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~ 144 (156)
++.+|..|. ||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..++.+++++|.+.....+.++
T Consensus 107 --in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 107 --ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp --SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred --CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 888899999 9999999844 4568999999 899999999999999999999999999999998765555544
No 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.95 E-value=2.2e-27 Score=141.14 Aligned_cols=111 Identities=33% Similarity=0.479 Sum_probs=84.1
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..+.++||.|+..|+.+.+++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|.||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHH
Confidence 345677888888888888888888776 56677777788888888888888888888877666 5666777788888
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH
Q 031607 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA 122 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~ 122 (156)
+|+..++.+++++|++.|++++.++..|.||+++|.
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 888888888888888777777777777888888773
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.1e-27 Score=143.50 Aligned_cols=114 Identities=26% Similarity=0.333 Sum_probs=108.5
Q ss_pred hhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCC-C
Q 031607 36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-G 114 (156)
Q Consensus 36 ~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~ 114 (156)
.+++..+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+. ++.+++++|++.|++++.++.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence 46788899999999999999999999999999877 77788999999999999 9999999999999999999999 9
Q ss_pred CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..++.+++++|+++|++++.+|..|.||||.
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 117 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 999999999999999999999999999999999999985
No 87
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=8.2e-27 Score=156.24 Aligned_cols=131 Identities=27% Similarity=0.346 Sum_probs=123.1
Q ss_pred CcccccccCcHHHHHHH-----hcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccc
Q 031607 2 DMDIDQTIKDKDLFKAA-----ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA 76 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~-----~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~ 76 (156)
+++..+..|.|||+.|+ ..++.++++.|++.+ ...+..+..|+||||+|+..|+.+++++|++.+.+ ++.
T Consensus 137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~ 211 (276)
T 4hbd_A 137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNV 211 (276)
T ss_dssp CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence 67888999999999999 778999999999988 67777888999999999999999999999999888 778
Q ss_pred ccCCCchHHHHHHhcCCHHHHHHHHH-cCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC
Q 031607 77 VDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137 (156)
Q Consensus 77 ~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g 137 (156)
++..|.||||+|+..++.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++.
T Consensus 212 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 89999999999999999999999999 79999999999999999999999999999999874
No 88
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=1.5e-26 Score=137.54 Aligned_cols=111 Identities=31% Similarity=0.327 Sum_probs=103.3
Q ss_pred CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121 (156)
Q Consensus 42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a 121 (156)
+..|.+|||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC---cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45688999999999999999999998877 777888999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 122 ASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
+..++.+++++|+++|++++.+|..|.||++...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 9999999999999999999999999999998653
No 89
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.94 E-value=5.1e-26 Score=156.06 Aligned_cols=147 Identities=30% Similarity=0.355 Sum_probs=99.8
Q ss_pred CcccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccC----------CCCCCchHHHHHHHcCChHHHHHHHhh-ccc
Q 031607 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL----------RNDDDRTLLHVAASCGHPEVVEILLSV-DES 70 (156)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~----------~~~~g~~~l~~A~~~~~~~~~~~ll~~-~~~ 70 (156)
+++..+..|.||++.|+..|+.++++++++.+ ++++. .+..|.||||+|+..|+.+++++|+.. +.+
T Consensus 117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g--a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad 194 (337)
T 4g8k_A 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194 (337)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC--CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence 56677778888888888888888888888876 33322 344578888888888888888888854 444
Q ss_pred ccccccccCCCchHHHHHHhcCC----HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHc-CCCCCcccc
Q 031607 71 ANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDK 145 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~ 145 (156)
++.++..|.++++.++..+. ..++++|++.|++++.++..|.||||+|+..++.+++++|++. |++++.+|.
T Consensus 195 ---~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 195 ---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp ---TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred ---cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence 55556666666665554322 2355666666666666666666666666666666666666653 666666666
Q ss_pred cccccccC
Q 031607 146 ACWLHSIA 153 (156)
Q Consensus 146 ~~~t~l~~ 153 (156)
.|+||||.
T Consensus 272 ~G~TpL~~ 279 (337)
T 4g8k_A 272 DGKTALLL 279 (337)
T ss_dssp TSCBHHHH
T ss_pred CCCCHHHH
Confidence 66666653
No 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=4.4e-26 Score=163.72 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=116.9
Q ss_pred CcHHHHHHHhcCCHHHHHHHHHHHhhhhccCC------CCCCchHHHHHHH---cCChHHHHHHHhhcccccccccccCC
Q 031607 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR------NDDDRTLLHVAAS---CGHPEVVEILLSVDESANVVNAVDEE 80 (156)
Q Consensus 10 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~------~~~g~~~l~~A~~---~~~~~~~~~ll~~~~~~~~~~~~~~~ 80 (156)
..+.|+.|+..|+++.++.|++.+ .+++.. +..|.||||+||. .|+.+++++|++.+.+ ++.++..
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g--~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~---vn~~d~~ 206 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD 206 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT--CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC---TTCCCSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc--ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC---CCccCCC
Confidence 347899999999999999999998 666666 8899999999977 8999999999999988 7888999
Q ss_pred CchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccc
Q 031607 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146 (156)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~ 146 (156)
|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++++.....
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999999875433
No 91
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.94 E-value=4.1e-26 Score=157.99 Aligned_cols=143 Identities=23% Similarity=0.251 Sum_probs=117.3
Q ss_pred cccCcHHHHHHHhc-CCHHHHHHHHHHHhhhhccCCC--CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607 7 QTIKDKDLFKAAET-GDSSTFKSLSKQQLLKSLSLRN--DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (156)
Q Consensus 7 ~~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~--~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (156)
...+.++||.|+.. |++++++.|++.+ .+++..+ ..|.||||+|+..++.+++++|++++.+ ++.++..|.|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~T 270 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRG 270 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCC
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCC
Confidence 44567899999999 9999999999988 6777777 8899999999999999999999999887 7788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcC---CCCCcccccccccccCC
Q 031607 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG---AKINSKDKACWLHSIAP 154 (156)
Q Consensus 84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~~~t~l~~~ 154 (156)
|||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+..+ .+....+..+.|++...
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 34445566777777643
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.94 E-value=3.6e-26 Score=144.58 Aligned_cols=112 Identities=24% Similarity=0.374 Sum_probs=103.0
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPI 85 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l 85 (156)
+..|.||||.|+..|+.++++.|++ + .+++.++..|+||||+|+..|+.+++++|++.+.+ ++.++ ..|.|||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~g~tpL 114 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSSCCHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCCHH
Confidence 4578899999999999999999999 5 68888999999999999999999999999999887 66666 8899999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~ 124 (156)
|+|+..++.+++++|+++|++++.++..|.||+++|+..
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999875
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=1.7e-26 Score=152.18 Aligned_cols=127 Identities=24% Similarity=0.366 Sum_probs=115.5
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccccc-CCCchHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPI 85 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l 85 (156)
+..|.||||.|+..|+.++++.|++ + .+++.++..|+||||+||..|+.+++++|++.+.+ ++.++ ..|.|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCCCCCCCHH
Confidence 3468999999999999999999999 5 68889999999999999999999999999999887 66666 7899999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHH----------------HCCCHHHHHHHHHcCCC
Q 031607 86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA----------------SKGWLKIVELLISRGAK 139 (156)
Q Consensus 86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~----------------~~~~~~~~~~Ll~~g~~ 139 (156)
|+|+..++.+++++|++.|++++.++..|.||+++|+ ..|+.+++++|++++.+
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998888 56788999999987544
No 94
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.93 E-value=2.8e-25 Score=148.94 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=117.4
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhh----ccCCCCCCchHHHHHHHc---CChHHHHHHHhhcccccccccccCCC
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEG 81 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~----~~~~~~~g~~~l~~A~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (156)
...++|+.|+..|+++.++.+++.+.... ++..+..|+||||+|+.. ++.+++++|++.+.+ ++.++..|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g 205 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCC
Confidence 34679999999999999999999883222 455578899999999999 899999999999988 78889999
Q ss_pred chHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCC
Q 031607 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140 (156)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~ 140 (156)
.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999998754
No 95
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.3e-25 Score=135.56 Aligned_cols=109 Identities=39% Similarity=0.472 Sum_probs=103.2
Q ss_pred CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHH
Q 031607 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121 (156)
Q Consensus 42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a 121 (156)
...+.||||+|+..|+.+++++|++.+.+ ++.++..|.|+||+|+..++.+++++|++.|++++.++..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45689999999999999999999999877 777889999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 122 ASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+..++.+++++|+++|++++.+|..|.||||.
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~ 119 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHH
Confidence 99999999999999999999999999999985
No 96
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=145.72 Aligned_cols=126 Identities=27% Similarity=0.236 Sum_probs=106.2
Q ss_pred HHHHHHHHhhhh-ccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcC
Q 031607 26 FKSLSKQQLLKS-LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104 (156)
Q Consensus 26 v~~ll~~~~~~~-~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~ 104 (156)
++.|++++.... .+..+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 356777762211 233456788999999999999999999999887 7778999999999999999999999999999
Q ss_pred CCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccc-ccccccccCC
Q 031607 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACWLHSIAP 154 (156)
Q Consensus 105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~~ 154 (156)
++++.++..|.|||++|+..|+.+++++|+++|++++.++ ..|+||||..
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999987 6999999975
No 97
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.93 E-value=7.4e-25 Score=124.06 Aligned_cols=93 Identities=49% Similarity=0.757 Sum_probs=82.4
Q ss_pred CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH
Q 031607 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123 (156)
Q Consensus 44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~ 123 (156)
+|+||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 478999999999999999999988877 67788889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCC
Q 031607 124 KGWLKIVELLISRGAK 139 (156)
Q Consensus 124 ~~~~~~~~~Ll~~g~~ 139 (156)
.++.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999998874
No 98
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=6.4e-25 Score=130.51 Aligned_cols=107 Identities=47% Similarity=0.689 Sum_probs=102.1
Q ss_pred CCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHH
Q 031607 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123 (156)
Q Consensus 44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~ 123 (156)
+|+||||+|+..|+.+++++|++.+.+ ++..+..|.|+||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 489999999999999999999999877 67778899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 124 KGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.++.+++++|+++|++++.+|..|.||++.
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~ 107 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 999999999999999999999999999975
No 99
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.93 E-value=8.8e-26 Score=132.62 Aligned_cols=109 Identities=41% Similarity=0.568 Sum_probs=99.4
Q ss_pred CCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHHH
Q 031607 40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119 (156)
Q Consensus 40 ~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 119 (156)
.+|..|+||||+||..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++.++..|.|||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 4688999999999999999999999998877 6778889999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHcCCCCCcccccccccc
Q 031607 120 YAASKGWLKIVELLISRGAKINSKDKACWLHS 151 (156)
Q Consensus 120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l 151 (156)
+|+..++.+++++|+++|++++.++..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999998874
No 100
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.9e-25 Score=137.03 Aligned_cols=111 Identities=28% Similarity=0.361 Sum_probs=101.9
Q ss_pred cCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCc-H
Q 031607 39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-A 117 (156)
Q Consensus 39 ~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 117 (156)
...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+ .++.+++++|++.|++++.++..|.| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 34577899999999999999999999998877 7778889999999985 89999999999999999999999999 9
Q ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 117 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 999999999999999999999999999999999985
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=9.8e-25 Score=137.96 Aligned_cols=108 Identities=31% Similarity=0.386 Sum_probs=101.7
Q ss_pred CCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHH
Q 031607 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHY 120 (156)
Q Consensus 42 ~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~ 120 (156)
+..|.||||+|+..|+.+++++|++ +.+ ++.++..|.||||+|+..++.+++++|++.|++++.++ ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 3468999999999999999999998 665 77889999999999999999999999999999999888 889999999
Q ss_pred HHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 121 AASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 149 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALEL 149 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence 999999999999999999999999999999975
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=6.8e-25 Score=142.50 Aligned_cols=112 Identities=31% Similarity=0.371 Sum_probs=105.4
Q ss_pred CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHc-CCCCccCcCCCCcHHH
Q 031607 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALH 119 (156)
Q Consensus 41 ~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~ 119 (156)
.+..|.||||+||..|+.+++++|++.+.+ ++.++..|.|+||+|+..++.+++++|++. |++++.++..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 356789999999999999999999998877 777889999999999999999999999998 9999999999999999
Q ss_pred HHHHCCCHHHHHHHHHcCCCCCcccccccccccCCC
Q 031607 120 YAASKGWLKIVELLISRGAKINSKDKACWLHSIAPG 155 (156)
Q Consensus 120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~ 155 (156)
+|+..|+.+++++|+++|++++.+|..|.|||+...
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 181 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence 999999999999999999999999999999998653
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=2.7e-24 Score=141.65 Aligned_cols=107 Identities=32% Similarity=0.396 Sum_probs=101.1
Q ss_pred CCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCc-CCCCcHHHHH
Q 031607 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA 121 (156)
Q Consensus 43 ~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~a 121 (156)
..|.||||+|+..|+.+++++|+. +.+ ++.++..|.||||+|+..++.+++++|++.|++++.++ ..|.||||+|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 468999999999999999999998 665 77889999999999999999999999999999999988 7899999999
Q ss_pred HHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 122 ASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 150 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALEL 150 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 99999999999999999999999999999985
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.90 E-value=2e-23 Score=118.16 Aligned_cols=93 Identities=37% Similarity=0.516 Sum_probs=86.1
Q ss_pred cCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHH
Q 031607 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (156)
Q Consensus 9 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (156)
.|.||||.|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++.+.+ ++.++..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHH
Confidence 3789999999999999999999987 78889999999999999999999999999999887 778889999999999
Q ss_pred HhcCCHHHHHHHHHcCCC
Q 031607 89 ASIGNVTIVEMLLSKGAD 106 (156)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~ 106 (156)
+..++.+++++|++.|++
T Consensus 76 ~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 ARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHcCCC
Confidence 999999999999998863
No 105
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.6e-25 Score=155.44 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=111.3
Q ss_pred ccCcHHHHHHHhcCCHHHHHHHHHHHhhh-hccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHH
Q 031607 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (156)
Q Consensus 8 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+.||||.|++.|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++++.+....+..... .||||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence 34579999999999999999999987311 11234556889999999999999999999998542111112222 89999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCcc--CcCCCCcHHHHHH-HCCCHHHHHHHHHcCCCCCcccccccccccCC
Q 031607 87 SAASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGAKINSKDKACWLHSIAP 154 (156)
Q Consensus 87 ~a~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~ 154 (156)
+|+..|+.+++++|++.|++++. .+..|.|||++|+ ..|+.+++++|+++|+ .|.||++..
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~A 232 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHE 232 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCT
T ss_pred HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHH
Confidence 99999999999999999998776 7888999999999 9999999999999774 378888764
No 106
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=8.3e-25 Score=149.68 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=102.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhccC-CCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcC
Q 031607 14 LFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92 (156)
Q Consensus 14 l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~ 92 (156)
.+.|+..+..++++.|++.+ .+++. ++..|+||||+||..|+.+++++|++.+.+ ++.++..|.||||+|+..+
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSS
T ss_pred hHHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhc
Confidence 46677667677777777776 78888 899999999999999999999999999987 7788999999999999998
Q ss_pred C---HHHHHHHHHcC-CCCccCcCCCCcHHHHHHH----CCCHHHHHHHHHc
Q 031607 93 N---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR 136 (156)
Q Consensus 93 ~---~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~ 136 (156)
+ .++++.|++.+ .+++.++..|.||||+|+. .|+.+++++|++.
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 8 67778888775 6789999999999999999 8999999999987
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.90 E-value=5.1e-24 Score=125.05 Aligned_cols=109 Identities=34% Similarity=0.461 Sum_probs=99.9
Q ss_pred cccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchH
Q 031607 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP 84 (156)
Q Consensus 5 ~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 84 (156)
..+..|.|+||.|+..|+.+++++|++.+ .+++.++..|+||||+|+..++.+++++|++.+.+ ++.++..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tp 78 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTP 78 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCH
Confidence 56789999999999999999999999987 77888999999999999999999999999999877 77788899999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcHH
Q 031607 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118 (156)
Q Consensus 85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 118 (156)
|++|+..++.+++++|++.|++++.++..+.+|-
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999998888774
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=130.19 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=98.5
Q ss_pred CCchHHHHHHHcCChHHHHHHHhhccccccccc------ccCCCchHHHHHHhc---CCHHHHHHHHHcCCCCccCcCCC
Q 031607 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNA------VDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGG 114 (156)
Q Consensus 44 ~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~ 114 (156)
...++|+.|+..++.+.++.|+..+.+ ++. .+..|.||||+|+.. ++.+++++|++.|++++.+|..|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d---~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCc---ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence 345779999999999999999988877 444 578899999999987 89999999999999999999999
Q ss_pred CcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 115 RTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 115 ~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
.||||+|+..|+.+++++|+++|++++.+|..|.|||+.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~ 265 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 999999999999999999999999999999999999985
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=1.1e-21 Score=135.78 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=101.6
Q ss_pred CCCCCchHHHHHHHc-CChHHHHHHHhhccccccccccc--CCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607 41 RNDDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117 (156)
Q Consensus 41 ~~~~g~~~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (156)
....+.++||.|+.. ++.+++++|+..+.+ ++..+ ..|.||||+|+..++.+++++|++.|++++.+|..|.||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 344567899999999 999999999999887 56666 789999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 118 LHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~ 307 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHH
Confidence 999999999999999999999999999999999985
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=3.7e-21 Score=138.23 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=99.1
Q ss_pred CCCchHHHHHHHcCChHHHHHHHhhcccccccccc------cCCCchHHHHHHh---cCCHHHHHHHHHcCCCCccCcCC
Q 031607 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV------DEEGWAPIHSAAS---IGNVTIVEMLLSKGADVNLKNDG 113 (156)
Q Consensus 43 ~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~l~~~~~~~~~~~~~ 113 (156)
....+.||.|+..|+.+.++.|+..+.+ ++.. +..|.||||+|+. .++.+++++|++.|++++.+|..
T Consensus 130 ~~~~~~L~~A~~~g~~~~v~~ll~~g~~---~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~ 206 (497)
T 3lvq_E 130 TPEPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD 206 (497)
T ss_dssp C-CHHHHHHHHHHTCHHHHHHHHHTTCC---SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSS
T ss_pred cccHHHHHHHHhccCHHHHHHHHhhccc---ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCC
Confidence 3445789999999999999999999887 4444 7789999999966 89999999999999999999999
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 114 ~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 246 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 9999999999999999999999999999999999999985
No 111
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.85 E-value=8.4e-24 Score=146.87 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=107.9
Q ss_pred ccccCcHHHHHHHhcCCHHHHHHHHHHHhh---hhccCCCCCCchHHHHHHHcCChHHHHHHHhhccccccccc--ccCC
Q 031607 6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLL---KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA--VDEE 80 (156)
Q Consensus 6 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~---~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~--~~~~ 80 (156)
.+..+.+|||.|+..|+.++|++|++.+.. .+++ +.+ +||||+|+..|+.+++++|++++.+ ++. .+..
T Consensus 124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~ 197 (376)
T 2aja_A 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ--AEN-YHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAE 197 (376)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS--HHH-HHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHH
T ss_pred hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC--CCC-CCHHHHHHHCCCHHHHHHHHHcCCc---cchhccCCC
Confidence 344678899999999999999999998832 2333 223 9999999999999999999999876 444 6778
Q ss_pred CchHHHHHH-hcCCHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCHHHHHHHHHcCCCCCccccc
Q 031607 81 GWAPIHSAA-SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146 (156)
Q Consensus 81 ~~~~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~ 146 (156)
|.||||+|+ ..|+.+++++|++.|. .+.||+++|+..|+.+++++|+++|++++..+..
T Consensus 198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~ 257 (376)
T 2aja_A 198 NYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 257 (376)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHH
Confidence 999999999 9999999999998753 2679999999999999999999999888665543
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.85 E-value=8.1e-21 Score=110.57 Aligned_cols=93 Identities=33% Similarity=0.448 Sum_probs=78.3
Q ss_pred ccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCchHHHHHHhcCCHHHHHHHHHcCCCCccCcCCCCcH
Q 031607 38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117 (156)
Q Consensus 38 ~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (156)
....+.+|.|+||+|+..|+.+++++|++.+.+ ++.++..|.|+||+|+..++.+++++|++.|++++.++..|.||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 344577889999999999999999999988776 67778889999999999999999999999999999888899999
Q ss_pred HHHHHHCCCHHHHHHH
Q 031607 118 LHYAASKGWLKIVELL 133 (156)
Q Consensus 118 l~~a~~~~~~~~~~~L 133 (156)
+++|+..++.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999988876
No 113
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=1.9e-20 Score=125.51 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=98.2
Q ss_pred chHHHHHHHcCChHHHHHHHhhcccccc---cccccCCCchHHHHHHhc---CCHHHHHHHHHcCCCCccCcCCCCcHHH
Q 031607 46 RTLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALH 119 (156)
Q Consensus 46 ~~~l~~A~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 119 (156)
.++|+.|+..++.+.+..++..+.+... ++..+..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 4689999999999999999988766321 234477899999999999 8999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHcCCCCCcccccccccccC
Q 031607 120 YAASKGWLKIVELLISRGAKINSKDKACWLHSIA 153 (156)
Q Consensus 120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~ 153 (156)
+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 244 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999985
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.83 E-value=3.9e-20 Score=107.63 Aligned_cols=92 Identities=28% Similarity=0.381 Sum_probs=82.8
Q ss_pred ccccccCcHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCCCchHHHHHHHcCChHHHHHHHhhcccccccccccCCCch
Q 031607 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (156)
Q Consensus 4 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~g~~~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (156)
...+..|.++||.|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|+..+.+ ++.++..|.|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t 92 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKT 92 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCc
Confidence 345677899999999999999999999987 78888999999999999999999999999999877 7778899999
Q ss_pred HHHHHHhcCCHHHHHHH
Q 031607 84 PIHSAASIGNVTIVEML 100 (156)
Q Consensus 84 ~l~~a~~~~~~~~~~~l 100 (156)
||++|+..++.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=80.41 E-value=2.5 Score=18.78 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 031607 12 KDLFKAAETGDSSTFKSLSKQ 32 (156)
Q Consensus 12 ~~l~~a~~~~~~~~v~~ll~~ 32 (156)
.-++.||..|+.+.++.|-.+
T Consensus 15 QqiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 467889999999999877543
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=56.82 E-value=11 Score=26.83 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhh----------hccCC--CCCCchHHHHHHHcCChHHHHHHHh
Q 031607 16 KAAETGDSSTFKSLSKQQLLK----------SLSLR--NDDDRTLLHVAASCGHPEVVEILLS 66 (156)
Q Consensus 16 ~a~~~~~~~~v~~ll~~~~~~----------~~~~~--~~~g~~~l~~A~~~~~~~~~~~ll~ 66 (156)
..+..|+...|+.++..+... -++.. -..|.|.+|+|+++.+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 345669999999998875211 11211 2459999999999999999999986
No 117
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=50.04 E-value=11 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=16.2
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSKQQ 33 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~~~ 33 (156)
|..-..++-.|+..++.+.++.|++-.
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yF 58 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWF 58 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333445666666666666666666654
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=44.07 E-value=27 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=12.6
Q ss_pred ccCCCchHHHHHHhcCCHHHHHHHHH
Q 031607 77 VDEEGWAPIHSAASIGNVTIVEMLLS 102 (156)
Q Consensus 77 ~~~~~~~~l~~a~~~~~~~~~~~l~~ 102 (156)
.|..|+-.+..+...+..+..+.+++
T Consensus 213 ~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 213 QDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCchhhHHHHHH
Confidence 34455555555555555444444443
No 119
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=41.82 E-value=92 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 031607 12 KDLFKAAETGDSSTFKSLSKQQ 33 (156)
Q Consensus 12 ~~l~~a~~~~~~~~v~~ll~~~ 33 (156)
..|-.+++.|+++....+++.-
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M 52 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEA 52 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3456667788888777776654
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=36.37 E-value=55 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=13.6
Q ss_pred cccCcHHHHHHHhcCCHHHHHHHHH
Q 031607 7 QTIKDKDLFKAAETGDSSTFKSLSK 31 (156)
Q Consensus 7 ~~~~~~~l~~a~~~~~~~~v~~ll~ 31 (156)
+.+|+..+-.....++.+....+++
T Consensus 70 d~~gn~vvQklle~~~~~~~~~i~~ 94 (351)
T 3gvo_A 70 DVFGNYVIQKFFEFGSLDQKLALAT 94 (351)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ChhhhHHHHHHHhhCCHHHHHHHHH
Confidence 4455555555555555555555544
No 121
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.64 E-value=1e+02 Score=22.34 Aligned_cols=85 Identities=13% Similarity=-0.039 Sum_probs=42.5
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHhhhhccCCCCC-CchHHHHHHHcCChHHHHHHHh----hcccccccccccCC-CchH
Q 031607 11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDD-DRTLLHVAASCGHPEVVEILLS----VDESANVVNAVDEE-GWAP 84 (156)
Q Consensus 11 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~-g~~~l~~A~~~~~~~~~~~ll~----~~~~~~~~~~~~~~-~~~~ 84 (156)
.+.|...++.|+++....+++.-....+.. |.. -.+.+...|+.|..+-+..+++ .+..+ +.. ..+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P------d~~ty~~L 181 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP------EEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC------CHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------CHHHHHHH
Confidence 445666777788888877777541111111 211 2334555567777655444433 22221 111 2234
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 031607 85 IHSAASIGNVTIVEMLLS 102 (156)
Q Consensus 85 l~~a~~~~~~~~~~~l~~ 102 (156)
+...+..|..+-+..+++
T Consensus 182 i~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHH
Confidence 455566777665544443
No 122
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.18 E-value=59 Score=17.29 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH-HHHHHHHHcCCCCCc
Q 031607 94 VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL-KIVELLISRGAKINS 142 (156)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~g~~~~~ 142 (156)
.+.++.|++.|+..... ..+| ....++. ..++||+.|..+.+.
T Consensus 22 ~~~I~qL~~MGF~~~~a----~~AL--~~~n~n~e~A~ewL~~h~~D~D~ 65 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPA----EEAL--KSNNMNLDQAMSALLEKKVDVDK 65 (85)
T ss_dssp HHHHHHHHHHTCCHHHH----HHHH--HHTTSCHHHHHHHHHTTSCCSSC
T ss_pred HHHHHHHHHcCCCHHHH----HHHH--HHcCCCHHHHHHHHHHCcCCccc
Confidence 45667777766543221 1223 2223334 467788887766653
No 123
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.98 E-value=1e+02 Score=16.30 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=21.6
Q ss_pred CHHHHHHHHHcCCCCccCcCCCCcHHHHHHHCCCH-HHHHHHHHcCCCCC
Q 031607 93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL-KIVELLISRGAKIN 141 (156)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~g~~~~ 141 (156)
+.+.++.|++.|+..... ..+|..+ ..++. ..++||+.|.-+.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a----~~AL~~t-~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHC----QKAAINT-SNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHH----HHHHHHT-TTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHH----HHHHHHH-cCCCHHHHHHHHHhCCCccc
Confidence 456677777776543211 0112211 11233 46778887755443
Done!