Query 031610
Match_columns 156
No_of_seqs 122 out of 1458
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02770 haloacid dehalogenase 99.8 2.7E-18 5.8E-23 129.5 9.8 81 47-128 107-187 (248)
2 TIGR02253 CTE7 HAD superfamily 99.8 4.5E-18 9.8E-23 125.5 10.1 80 48-128 94-173 (221)
3 PRK14988 GMP/IMP nucleotidase; 99.8 4.9E-18 1.1E-22 126.3 9.8 82 47-129 92-173 (224)
4 PRK13288 pyrophosphatase PpaX; 99.8 4.2E-18 9.2E-23 125.4 9.4 82 47-129 81-162 (214)
5 PLN03243 haloacid dehalogenase 99.8 5.4E-18 1.2E-22 128.7 10.1 81 47-128 108-188 (260)
6 COG0546 Gph Predicted phosphat 99.8 1.1E-17 2.4E-22 124.0 11.3 94 47-144 88-181 (220)
7 COG0637 Predicted phosphatase/ 99.8 2.2E-18 4.7E-23 127.9 7.3 81 47-128 85-165 (221)
8 PRK13226 phosphoglycolate phos 99.8 7.4E-18 1.6E-22 125.6 9.8 82 47-129 94-175 (229)
9 PRK10826 2-deoxyglucose-6-phos 99.7 2E-17 4.2E-22 122.5 9.9 82 47-129 91-172 (222)
10 TIGR01428 HAD_type_II 2-haloal 99.7 1.9E-17 4.1E-22 120.5 9.1 82 47-129 91-172 (198)
11 PLN02575 haloacid dehalogenase 99.7 3.5E-17 7.7E-22 129.3 10.2 82 47-129 215-296 (381)
12 PRK11587 putative phosphatase; 99.7 4.5E-17 9.7E-22 120.4 10.1 82 46-129 81-162 (218)
13 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1.8E-17 4E-22 113.2 7.4 101 23-128 1-114 (128)
14 TIGR03351 PhnX-like phosphonat 99.7 6.2E-17 1.4E-21 119.5 10.5 82 47-129 86-170 (220)
15 TIGR01449 PGP_bact 2-phosphogl 99.7 5.9E-17 1.3E-21 118.9 9.1 81 47-128 84-164 (213)
16 TIGR01685 MDP-1 magnesium-depe 99.7 5.7E-17 1.2E-21 115.9 8.3 115 21-139 1-144 (174)
17 TIGR01422 phosphonatase phosph 99.7 1E-16 2.2E-21 120.9 10.0 81 48-129 99-181 (253)
18 PRK13223 phosphoglycolate phos 99.7 1.4E-16 3.1E-21 121.6 10.8 82 47-129 100-181 (272)
19 TIGR01454 AHBA_synth_RP 3-amin 99.7 9.8E-17 2.1E-21 117.4 9.0 82 47-129 74-155 (205)
20 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 4.7E-16 1E-20 110.7 12.1 105 22-129 13-134 (166)
21 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 3E-16 6.6E-21 107.3 9.7 101 23-129 1-110 (132)
22 PRK10725 fructose-1-P/6-phosph 99.7 2.2E-16 4.7E-21 113.9 8.5 92 48-145 88-179 (188)
23 PLN02940 riboflavin kinase 99.7 1.9E-16 4.2E-21 126.1 8.7 82 47-129 92-174 (382)
24 TIGR02009 PGMB-YQAB-SF beta-ph 99.7 2.8E-16 6.1E-21 112.8 8.8 79 47-128 87-165 (185)
25 TIGR02252 DREG-2 REG-2-like, H 99.7 5.4E-16 1.2E-20 113.2 10.2 80 48-129 105-184 (203)
26 PRK13222 phosphoglycolate phos 99.7 9.6E-16 2.1E-20 113.3 11.4 82 47-129 92-173 (226)
27 PRK08942 D,D-heptose 1,7-bisph 99.7 8.9E-16 1.9E-20 110.5 10.6 107 20-129 1-127 (181)
28 TIGR01656 Histidinol-ppas hist 99.7 3.4E-16 7.4E-21 109.2 8.2 106 23-129 1-125 (147)
29 PRK13478 phosphonoacetaldehyde 99.7 7E-16 1.5E-20 117.4 10.5 80 48-128 101-182 (267)
30 TIGR01990 bPGM beta-phosphoglu 99.7 4.5E-16 9.7E-21 111.8 8.7 79 48-129 87-165 (185)
31 PRK09449 dUMP phosphatase; Pro 99.7 6.3E-16 1.4E-20 114.4 9.3 79 48-128 95-174 (224)
32 TIGR00213 GmhB_yaeD D,D-heptos 99.7 1.6E-15 3.4E-20 108.8 10.8 103 23-129 2-130 (176)
33 PF13419 HAD_2: Haloacid dehal 99.6 5.6E-16 1.2E-20 109.3 7.5 88 45-136 74-161 (176)
34 TIGR01261 hisB_Nterm histidino 99.6 1.5E-15 3.3E-20 107.5 9.2 104 23-129 2-127 (161)
35 COG1011 Predicted hydrolase (H 99.6 1.1E-15 2.5E-20 113.0 9.0 80 47-128 98-177 (229)
36 TIGR02254 YjjG/YfnB HAD superf 99.6 2E-15 4.3E-20 111.4 9.4 80 47-128 96-176 (224)
37 PRK06769 hypothetical protein; 99.6 1.6E-15 3.4E-20 108.7 8.4 106 21-129 3-117 (173)
38 TIGR01548 HAD-SF-IA-hyp1 haloa 99.6 4.9E-15 1.1E-19 107.9 10.1 75 53-129 111-185 (197)
39 TIGR01509 HAD-SF-IA-v3 haloaci 99.6 7.6E-15 1.6E-19 104.9 10.5 87 47-138 84-170 (183)
40 TIGR01549 HAD-SF-IA-v1 haloaci 99.6 4.8E-15 1E-19 103.6 9.2 77 47-127 63-139 (154)
41 PRK13225 phosphoglycolate phos 99.6 7E-15 1.5E-19 112.4 9.5 79 47-129 141-219 (273)
42 TIGR02247 HAD-1A3-hyp Epoxide 99.6 6E-15 1.3E-19 108.3 8.5 82 47-128 93-175 (211)
43 PRK10563 6-phosphogluconate ph 99.6 4.2E-15 9.1E-20 109.9 7.6 79 47-129 87-166 (221)
44 TIGR01993 Pyr-5-nucltdase pyri 99.6 8.5E-15 1.8E-19 105.4 8.6 87 48-141 84-174 (184)
45 PRK09456 ?-D-glucose-1-phospha 99.6 6.9E-15 1.5E-19 107.3 7.2 93 48-144 84-177 (199)
46 TIGR01684 viral_ppase viral ph 99.6 1.4E-14 3E-19 110.3 8.8 84 18-109 122-206 (301)
47 PRK06698 bifunctional 5'-methy 99.6 2.2E-14 4.7E-19 116.9 10.4 77 47-127 329-405 (459)
48 TIGR01686 FkbH FkbH-like domai 99.6 3.3E-14 7.2E-19 110.9 10.2 117 21-146 2-124 (320)
49 PF12689 Acid_PPase: Acid Phos 99.6 6.1E-14 1.3E-18 99.7 10.5 110 21-138 2-137 (169)
50 PRK10748 flavin mononucleotide 99.5 2E-14 4.2E-19 107.8 7.9 76 47-129 112-187 (238)
51 TIGR01670 YrbI-phosphatas 3-de 99.5 2.2E-14 4.9E-19 100.9 7.7 105 22-139 1-108 (154)
52 PLN02919 haloacid dehalogenase 99.5 5.2E-14 1.1E-18 124.1 10.6 80 49-129 162-242 (1057)
53 smart00577 CPDc catalytic doma 99.5 9.7E-14 2.1E-18 97.0 10.0 121 23-151 3-144 (148)
54 TIGR02726 phenyl_P_delta pheny 99.5 5.4E-14 1.2E-18 100.3 8.7 109 21-140 6-115 (169)
55 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.5 7.5E-14 1.6E-18 101.3 9.1 81 48-129 80-170 (201)
56 PLN02779 haloacid dehalogenase 99.5 1.3E-13 2.7E-18 106.1 9.8 81 48-129 144-226 (286)
57 cd01427 HAD_like Haloacid deha 99.5 2E-13 4.4E-18 92.1 9.6 106 24-134 1-122 (139)
58 TIGR01493 HAD-SF-IA-v2 Haloaci 99.5 1E-14 2.2E-19 104.0 3.2 74 48-129 90-163 (175)
59 COG4996 Predicted phosphatase 99.5 1.2E-13 2.7E-18 92.7 7.9 110 23-140 1-131 (164)
60 TIGR00338 serB phosphoserine p 99.5 2.2E-13 4.9E-18 100.4 10.2 121 17-139 9-184 (219)
61 PHA03398 viral phosphatase sup 99.5 5.6E-13 1.2E-17 101.6 10.3 73 19-99 125-198 (303)
62 TIGR01663 PNK-3'Pase polynucle 99.4 1.1E-12 2.4E-17 107.8 11.4 108 19-129 165-291 (526)
63 TIGR01668 YqeG_hyp_ppase HAD s 99.4 1.1E-12 2.4E-17 93.7 9.2 91 20-128 23-114 (170)
64 TIGR01672 AphA HAD superfamily 99.4 1.9E-12 4.1E-17 96.9 10.5 111 24-145 65-204 (237)
65 PRK05446 imidazole glycerol-ph 99.4 2.6E-12 5.7E-17 101.1 11.3 106 21-129 1-128 (354)
66 KOG3085 Predicted hydrolase (H 99.4 7.5E-13 1.6E-17 98.4 7.3 87 46-137 111-197 (237)
67 PRK15126 thiamin pyrimidine py 99.4 9.7E-13 2.1E-17 100.2 8.0 63 21-93 1-63 (272)
68 PHA02530 pseT polynucleotide k 99.4 4.4E-12 9.4E-17 97.9 11.6 119 20-142 156-286 (300)
69 PRK09484 3-deoxy-D-manno-octul 99.4 1.2E-12 2.7E-17 94.5 8.0 110 19-139 18-128 (183)
70 PHA02597 30.2 hypothetical pro 99.4 3.1E-12 6.7E-17 93.0 9.1 88 47-144 73-164 (197)
71 PRK10976 putative hydrolase; P 99.4 2.5E-12 5.4E-17 97.6 8.5 63 21-93 1-63 (266)
72 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 2.5E-12 5.4E-17 96.6 8.4 94 19-128 5-101 (242)
73 PRK10530 pyridoxal phosphate ( 99.3 2.8E-12 6E-17 97.4 7.1 63 22-94 3-65 (272)
74 PRK10513 sugar phosphate phosp 99.3 4.1E-12 8.9E-17 96.5 7.9 59 22-90 3-61 (270)
75 COG2179 Predicted hydrolase of 99.3 9.5E-12 2.1E-16 87.0 8.6 94 18-129 24-117 (175)
76 COG1778 Low specificity phosph 99.3 2.7E-12 5.9E-17 88.8 5.8 100 19-129 5-106 (170)
77 PRK01158 phosphoglycolate phos 99.3 3.8E-12 8.3E-17 94.4 6.7 64 21-94 2-65 (230)
78 PRK00192 mannosyl-3-phosphogly 99.3 4.7E-12 1E-16 96.7 6.8 64 21-94 3-66 (273)
79 PRK11133 serB phosphoserine ph 99.3 1.4E-11 3E-16 96.2 9.5 92 47-140 180-281 (322)
80 TIGR01487 SPP-like sucrose-pho 99.3 6.9E-12 1.5E-16 92.4 6.6 63 22-94 1-63 (215)
81 KOG2914 Predicted haloacid-hal 99.3 1.6E-11 3.5E-16 90.8 7.7 80 46-126 90-173 (222)
82 COG0241 HisB Histidinol phosph 99.3 6.9E-11 1.5E-15 84.7 10.5 109 21-131 4-131 (181)
83 COG0561 Cof Predicted hydrolas 99.3 1.2E-11 2.6E-16 93.8 6.8 64 21-94 2-65 (264)
84 PLN02954 phosphoserine phospha 99.3 4.5E-11 9.8E-16 88.4 9.7 73 47-120 83-169 (224)
85 PF08645 PNK3P: Polynucleotide 99.3 3.3E-11 7.1E-16 85.2 8.2 105 23-129 1-125 (159)
86 TIGR01691 enolase-ppase 2,3-di 99.2 9.1E-11 2E-15 87.1 9.7 93 47-145 94-189 (220)
87 PRK03669 mannosyl-3-phosphogly 99.2 2.4E-11 5.2E-16 92.7 6.7 60 20-89 5-64 (271)
88 PRK09552 mtnX 2-hydroxy-3-keto 99.2 5.6E-11 1.2E-15 87.9 8.0 81 46-128 72-166 (219)
89 PRK12702 mannosyl-3-phosphogly 99.2 3.4E-11 7.3E-16 92.0 6.7 63 22-94 1-63 (302)
90 TIGR00099 Cof-subfamily Cof su 99.2 4E-11 8.7E-16 90.5 6.9 60 24-93 1-60 (256)
91 COG0560 SerB Phosphoserine pho 99.1 2.7E-10 5.9E-15 84.1 8.3 94 47-142 76-179 (212)
92 PRK11009 aphA acid phosphatase 99.1 1.3E-09 2.8E-14 81.7 11.9 110 23-145 64-204 (237)
93 PRK13582 thrH phosphoserine ph 99.1 2.3E-10 4.9E-15 83.5 7.6 80 47-128 67-150 (205)
94 PLN02645 phosphoglycolate phos 99.1 4.7E-10 1E-14 87.3 9.6 67 21-97 27-95 (311)
95 TIGR01482 SPP-subfamily Sucros 99.1 1.3E-10 2.7E-15 86.0 5.9 59 25-93 1-59 (225)
96 PTZ00174 phosphomannomutase; P 99.1 1.5E-10 3.3E-15 87.2 6.4 55 21-85 4-58 (247)
97 TIGR01488 HAD-SF-IB Haloacid D 99.1 5.5E-10 1.2E-14 79.5 9.0 81 47-128 72-164 (177)
98 PF08282 Hydrolase_3: haloacid 99.1 1.1E-10 2.3E-15 86.8 5.5 59 25-93 1-59 (254)
99 PLN02887 hydrolase family prot 99.1 1.3E-10 2.9E-15 96.7 6.6 63 17-89 303-365 (580)
100 TIGR02463 MPGP_rel mannosyl-3- 99.1 1.5E-10 3.2E-15 85.6 5.9 61 24-94 1-62 (221)
101 PF13344 Hydrolase_6: Haloacid 99.1 3.9E-10 8.3E-15 73.9 7.1 63 25-97 1-65 (101)
102 TIGR01533 lipo_e_P4 5'-nucleot 99.1 2.5E-09 5.5E-14 81.3 12.4 110 18-137 71-200 (266)
103 PLN02811 hydrolase 99.1 4.2E-10 9.2E-15 83.3 7.7 83 47-129 77-164 (220)
104 TIGR01489 DKMTPPase-SF 2,3-dik 99.1 7E-10 1.5E-14 79.5 8.6 51 47-98 71-121 (188)
105 TIGR02461 osmo_MPG_phos mannos 99.1 2E-10 4.3E-15 85.5 5.9 59 24-93 1-59 (225)
106 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.0 8.9E-10 1.9E-14 80.2 7.2 94 48-143 87-191 (202)
107 PTZ00445 p36-lilke protein; Pr 99.0 1.4E-09 3E-14 79.3 8.0 121 20-143 41-196 (219)
108 KOG3109 Haloacid dehalogenase- 99.0 1.8E-09 3.8E-14 78.8 8.1 85 47-137 99-190 (244)
109 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 6.9E-10 1.5E-14 83.9 6.0 61 24-94 1-61 (256)
110 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.0 1.2E-09 2.6E-14 82.9 7.3 63 22-90 1-65 (257)
111 smart00775 LNS2 LNS2 domain. T 99.0 9.3E-09 2E-13 72.6 11.1 61 24-85 1-66 (157)
112 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.0 1.3E-09 2.8E-14 82.3 7.1 66 22-98 1-69 (249)
113 TIGR01452 PGP_euk phosphoglyco 99.0 6.7E-09 1.4E-13 79.6 9.7 65 22-96 2-68 (279)
114 TIGR02251 HIF-SF_euk Dullard-l 98.9 3E-09 6.5E-14 75.4 7.2 109 23-139 2-126 (162)
115 TIGR01689 EcbF-BcbF capsule bi 98.9 3.7E-09 8E-14 71.8 7.0 50 23-77 2-53 (126)
116 PRK08238 hypothetical protein; 98.9 1.5E-08 3.3E-13 83.0 10.7 92 23-119 11-138 (479)
117 PRK10444 UMP phosphatase; Prov 98.9 3.4E-09 7.3E-14 80.1 6.4 58 22-89 1-60 (248)
118 TIGR02137 HSK-PSP phosphoserin 98.9 9E-09 2E-13 75.5 8.4 45 48-94 68-112 (203)
119 TIGR01544 HAD-SF-IE haloacid d 98.9 4.9E-08 1.1E-12 74.5 12.5 136 1-139 2-227 (277)
120 PRK14502 bifunctional mannosyl 98.9 3E-09 6.6E-14 89.3 6.4 64 21-94 415-478 (694)
121 TIGR03333 salvage_mtnX 2-hydro 98.9 6.8E-09 1.5E-13 76.6 7.0 79 47-126 69-160 (214)
122 TIGR01484 HAD-SF-IIB HAD-super 98.8 1.2E-08 2.5E-13 74.5 6.0 55 24-87 1-55 (204)
123 TIGR01485 SPP_plant-cyano sucr 98.7 1.2E-08 2.7E-13 76.8 4.8 61 24-91 3-63 (249)
124 COG0647 NagD Predicted sugar p 98.7 2E-08 4.4E-13 76.4 5.9 71 17-97 3-76 (269)
125 PLN02423 phosphomannomutase 98.7 2.4E-08 5.2E-13 75.3 5.9 53 21-84 5-58 (245)
126 PF09419 PGP_phosphatase: Mito 98.7 6.4E-08 1.4E-12 68.8 7.1 107 19-147 38-160 (168)
127 TIGR01675 plant-AP plant acid 98.7 2.9E-07 6.3E-12 68.5 10.7 89 3-91 55-165 (229)
128 PRK10187 trehalose-6-phosphate 98.6 5.4E-08 1.2E-12 74.2 5.4 60 23-87 15-75 (266)
129 TIGR02471 sucr_syn_bact_C sucr 98.6 4.8E-08 1E-12 73.0 4.3 55 24-90 1-55 (236)
130 PF05152 DUF705: Protein of un 98.6 4E-07 8.8E-12 69.1 8.8 74 18-98 118-191 (297)
131 TIGR02250 FCP1_euk FCP1-like p 98.6 5.9E-07 1.3E-11 63.3 9.2 80 20-101 4-111 (156)
132 PRK11590 hypothetical protein; 98.6 1.6E-07 3.6E-12 69.1 6.3 40 48-88 95-135 (211)
133 PF03031 NIF: NLI interacting 98.5 2E-07 4.4E-12 65.5 5.0 77 23-101 1-88 (159)
134 COG3769 Predicted hydrolase (H 98.5 3.7E-07 8E-12 67.0 6.1 61 19-90 4-64 (274)
135 TIGR01460 HAD-SF-IIA Haloacid 98.5 4.1E-07 8.9E-12 68.2 6.1 62 25-97 1-66 (236)
136 KOG1615 Phosphoserine phosphat 98.4 1.9E-06 4.1E-11 62.1 8.3 83 44-129 84-180 (227)
137 TIGR01545 YfhB_g-proteo haloac 98.4 8E-07 1.7E-11 65.6 6.5 40 48-88 94-134 (210)
138 PF00702 Hydrolase: haloacid d 98.4 6.5E-07 1.4E-11 65.2 5.7 76 48-129 127-202 (215)
139 TIGR01456 CECR5 HAD-superfamil 98.3 1E-06 2.2E-11 68.9 5.7 56 24-89 2-64 (321)
140 PLN03017 trehalose-phosphatase 98.3 2.1E-06 4.6E-11 68.0 6.7 57 20-82 109-165 (366)
141 TIGR01680 Veg_Stor_Prot vegeta 98.3 1.5E-05 3.2E-10 60.7 10.5 89 3-91 81-190 (275)
142 PF03767 Acid_phosphat_B: HAD 98.2 1.2E-06 2.5E-11 65.6 3.5 71 20-91 70-160 (229)
143 KOG4549 Magnesium-dependent ph 98.2 3.3E-06 7.1E-11 56.7 5.3 80 11-90 7-86 (144)
144 TIGR02245 HAD_IIID1 HAD-superf 98.2 5.9E-06 1.3E-10 60.2 7.0 80 6-89 5-84 (195)
145 PRK14501 putative bifunctional 98.2 2.5E-06 5.4E-11 73.5 5.6 62 21-87 491-553 (726)
146 COG4229 Predicted enolase-phos 98.2 7.2E-06 1.6E-10 58.6 6.9 92 47-145 102-197 (229)
147 PLN02151 trehalose-phosphatase 98.2 5.2E-06 1.1E-10 65.5 6.4 58 21-84 97-154 (354)
148 KOG2882 p-Nitrophenyl phosphat 98.1 8.2E-06 1.8E-10 62.5 6.8 61 18-89 18-81 (306)
149 PLN02205 alpha,alpha-trehalose 98.1 5.8E-06 1.3E-10 72.2 5.8 59 21-86 595-654 (854)
150 COG3882 FkbH Predicted enzyme 98.1 4.8E-05 1E-09 61.8 10.0 111 18-137 218-339 (574)
151 PLN02382 probable sucrose-phos 98.0 1.1E-05 2.3E-10 65.4 5.9 62 22-91 9-71 (413)
152 PLN02580 trehalose-phosphatase 98.0 1.5E-05 3.3E-10 63.6 6.2 59 21-85 118-176 (384)
153 PF06888 Put_Phosphatase: Puta 98.0 1.6E-05 3.5E-10 59.5 6.0 50 47-97 70-121 (234)
154 TIGR01452 PGP_euk phosphoglyco 98.0 4.1E-06 8.9E-11 64.2 2.5 80 49-129 144-226 (279)
155 PF08235 LNS2: LNS2 (Lipin/Ned 98.0 6.2E-05 1.3E-09 52.9 7.9 63 24-86 1-67 (157)
156 TIGR00685 T6PP trehalose-phosp 97.9 1.6E-05 3.4E-10 59.8 4.5 52 22-77 3-55 (244)
157 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.9 2.6E-06 5.6E-11 64.7 0.1 80 49-129 121-203 (257)
158 TIGR01525 ATPase-IB_hvy heavy 97.9 6.5E-05 1.4E-09 63.0 8.2 67 21-94 363-430 (556)
159 TIGR02244 HAD-IG-Ncltidse HAD 97.8 5.4E-05 1.2E-09 59.7 5.7 52 47-99 183-242 (343)
160 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.8 8.5E-06 1.8E-10 61.2 1.1 78 50-129 140-220 (242)
161 COG1877 OtsB Trehalose-6-phosp 97.7 6.5E-05 1.4E-09 57.3 5.5 61 19-84 15-76 (266)
162 PF06941 NT5C: 5' nucleotidase 97.6 8.3E-05 1.8E-09 53.9 4.1 30 47-76 72-101 (191)
163 TIGR01512 ATPase-IB2_Cd heavy 97.6 0.00037 8E-09 58.3 7.9 65 23-94 343-408 (536)
164 PF05116 S6PP: Sucrose-6F-phos 97.5 0.00013 2.7E-09 55.2 4.0 65 22-97 2-66 (247)
165 TIGR01511 ATPase-IB1_Cu copper 97.5 0.00051 1.1E-08 57.8 7.7 62 21-89 384-445 (562)
166 PLN03063 alpha,alpha-trehalose 97.4 0.00032 6.9E-09 61.2 5.7 63 22-86 507-570 (797)
167 PF02358 Trehalose_PPase: Treh 97.4 0.00013 2.9E-09 54.4 2.8 48 26-77 1-49 (235)
168 KOG3120 Predicted haloacid deh 97.4 0.00017 3.6E-09 53.2 3.1 49 47-96 83-132 (256)
169 KOG2134 Polynucleotide kinase 97.4 0.001 2.2E-08 52.8 7.6 98 21-120 74-185 (422)
170 PLN03064 alpha,alpha-trehalose 97.2 0.00066 1.4E-08 59.9 5.8 63 22-87 591-661 (934)
171 COG2503 Predicted secreted aci 97.2 0.0013 2.7E-08 49.3 6.1 76 17-92 74-169 (274)
172 COG4359 Uncharacterized conser 97.1 0.0019 4.1E-08 46.5 6.1 40 47-87 72-111 (220)
173 KOG3040 Predicted sugar phosph 97.1 0.002 4.4E-08 47.3 6.2 61 19-89 4-66 (262)
174 PRK10671 copA copper exporting 97.1 0.0027 5.9E-08 55.8 8.2 87 21-125 629-715 (834)
175 TIGR01522 ATPase-IIA2_Ca golgi 96.8 0.0052 1.1E-07 54.4 7.6 75 48-123 528-618 (884)
176 PF06437 ISN1: IMP-specific 5' 96.8 0.011 2.4E-07 47.1 8.3 72 5-85 130-202 (408)
177 KOG3189 Phosphomannomutase [Li 96.7 0.0045 9.8E-08 45.1 5.2 60 23-96 12-73 (252)
178 COG2217 ZntA Cation transport 96.7 0.008 1.7E-07 51.9 7.4 78 24-119 519-596 (713)
179 KOG1618 Predicted phosphatase 96.6 0.005 1.1E-07 48.0 5.4 44 22-75 35-82 (389)
180 PLN02645 phosphoglycolate phos 96.6 0.0012 2.6E-08 51.5 1.8 77 53-129 175-254 (311)
181 PF11019 DUF2608: Protein of u 96.4 0.05 1.1E-06 41.3 9.5 93 48-144 81-200 (252)
182 PRK11033 zntA zinc/cadmium/mer 96.1 0.059 1.3E-06 47.0 9.5 62 21-89 547-608 (741)
183 PRK01122 potassium-transportin 96.0 0.041 8.9E-07 47.4 8.3 81 21-119 424-504 (679)
184 TIGR01497 kdpB K+-transporting 96.0 0.04 8.6E-07 47.5 8.1 81 21-119 425-505 (675)
185 PRK14010 potassium-transportin 95.7 0.054 1.2E-06 46.7 7.7 60 48-119 441-500 (673)
186 PF04312 DUF460: Protein of un 95.3 0.11 2.4E-06 35.7 6.6 58 24-91 45-104 (138)
187 PF12710 HAD: haloacid dehalog 95.1 0.021 4.6E-07 40.6 3.0 42 50-92 87-132 (192)
188 PF05761 5_nucleotid: 5' nucle 95.1 0.035 7.6E-07 45.6 4.4 50 48-98 183-241 (448)
189 KOG2116 Protein involved in pl 95.0 0.033 7.1E-07 47.2 4.0 71 20-90 528-602 (738)
190 COG4087 Soluble P-type ATPase 94.9 0.15 3.3E-06 34.9 6.4 84 25-129 17-100 (152)
191 TIGR01457 HAD-SF-IIA-hyp2 HAD- 94.7 0.0076 1.6E-07 45.5 -0.3 78 49-129 122-202 (249)
192 KOG2882 p-Nitrophenyl phosphat 94.6 0.034 7.3E-07 43.0 3.0 77 50-130 167-249 (306)
193 TIGR01116 ATPase-IIA1_Ca sarco 94.5 0.26 5.7E-06 44.1 8.6 42 48-90 537-578 (917)
194 PF13242 Hydrolase_like: HAD-h 94.1 0.074 1.6E-06 32.3 3.2 27 103-129 2-28 (75)
195 TIGR01524 ATPase-IIIB_Mg magne 93.9 0.19 4.2E-06 44.7 6.6 41 48-89 515-555 (867)
196 PRK10517 magnesium-transportin 93.8 0.2 4.3E-06 44.7 6.6 41 48-89 550-590 (902)
197 PRK15122 magnesium-transportin 93.8 0.22 4.9E-06 44.4 6.9 41 48-89 550-590 (903)
198 TIGR01647 ATPase-IIIA_H plasma 93.8 0.12 2.5E-06 45.3 5.0 42 48-90 442-483 (755)
199 PLN02177 glycerol-3-phosphate 93.8 0.79 1.7E-05 38.3 9.6 34 56-91 115-149 (497)
200 TIGR01106 ATPase-IIC_X-K sodiu 93.7 0.094 2E-06 47.3 4.4 41 48-89 568-608 (997)
201 TIGR01517 ATPase-IIB_Ca plasma 93.2 0.46 9.9E-06 42.7 7.8 42 48-90 579-620 (941)
202 COG4850 Uncharacterized conser 93.2 0.26 5.6E-06 38.7 5.5 53 25-77 164-226 (373)
203 KOG0207 Cation transport ATPas 93.0 0.65 1.4E-05 41.1 8.2 65 21-92 702-766 (951)
204 PF00702 Hydrolase: haloacid d 92.5 0.068 1.5E-06 38.5 1.4 17 22-38 1-17 (215)
205 KOG4549 Magnesium-dependent ph 92.5 0.59 1.3E-05 31.8 5.7 84 21-123 4-87 (144)
206 TIGR01657 P-ATPase-V P-type AT 92.2 0.26 5.7E-06 44.7 5.0 42 48-90 656-697 (1054)
207 PRK10530 pyridoxal phosphate ( 92.2 0.3 6.6E-06 36.8 4.7 92 50-142 139-234 (272)
208 COG3700 AphA Acid phosphatase 92.1 0.36 7.9E-06 34.9 4.7 47 52-99 118-168 (237)
209 TIGR01523 ATPase-IID_K-Na pota 92.0 0.27 5.7E-06 44.7 4.8 42 48-90 646-687 (1053)
210 TIGR02886 spore_II_AA anti-sig 92.0 1.2 2.7E-05 28.5 6.9 74 3-92 22-96 (106)
211 KOG2630 Enolase-phosphatase E- 91.9 0.94 2E-05 34.0 6.8 87 48-145 123-217 (254)
212 KOG0202 Ca2+ transporting ATPa 91.8 0.35 7.5E-06 42.5 5.0 46 47-93 583-628 (972)
213 PRK10444 UMP phosphatase; Prov 91.7 0.052 1.1E-06 41.0 0.1 29 101-129 170-198 (248)
214 KOG1605 TFIIF-interacting CTD 91.5 0.074 1.6E-06 40.6 0.7 67 20-88 87-169 (262)
215 KOG0204 Calcium transporting A 91.5 0.75 1.6E-05 40.6 6.7 46 47-93 646-691 (1034)
216 PF12710 HAD: haloacid dehalog 91.4 0.11 2.4E-06 36.8 1.5 13 25-37 1-13 (192)
217 KOG2469 IMP-GMP specific 5'-nu 91.3 0.4 8.6E-06 38.7 4.6 45 53-98 203-250 (424)
218 cd07041 STAS_RsbR_RsbS_like Su 90.8 1.8 3.9E-05 27.9 6.8 71 4-90 25-96 (109)
219 COG0474 MgtA Cation transport 90.3 0.58 1.3E-05 42.0 5.3 44 48-92 547-590 (917)
220 TIGR02468 sucrsPsyn_pln sucros 90.2 0.86 1.9E-05 41.3 6.1 56 27-97 777-837 (1050)
221 COG5083 SMP2 Uncharacterized p 89.7 0.33 7.2E-06 39.7 2.9 55 20-75 373-430 (580)
222 PF01740 STAS: STAS domain; I 89.5 0.64 1.4E-05 30.4 3.8 76 3-92 23-105 (117)
223 KOG2470 Similar to IMP-GMP spe 89.4 0.3 6.5E-06 38.9 2.5 48 49-97 241-291 (510)
224 PLN02499 glycerol-3-phosphate 89.2 0.61 1.3E-05 38.8 4.2 34 56-91 101-135 (498)
225 TIGR01494 ATPase_P-type ATPase 89.2 3.6 7.7E-05 34.2 8.8 62 20-88 325-386 (499)
226 COG0731 Fe-S oxidoreductases [ 88.6 3.7 8E-05 32.0 7.9 36 47-83 91-127 (296)
227 TIGR01652 ATPase-Plipid phosph 88.3 0.68 1.5E-05 42.2 4.3 43 48-91 631-673 (1057)
228 cd06844 STAS Sulphate Transpor 87.6 4.1 9E-05 25.8 6.7 73 2-90 21-94 (100)
229 cd07043 STAS_anti-anti-sigma_f 87.5 5 0.00011 24.9 7.6 58 22-93 38-96 (99)
230 TIGR00377 ant_ant_sig anti-ant 86.7 6.2 0.00013 25.1 7.6 60 20-93 41-101 (108)
231 KOG0203 Na+/K+ ATPase, alpha s 85.5 2.3 5E-05 37.7 5.7 82 5-88 546-629 (1019)
232 COG0647 NagD Predicted sugar p 82.6 5.7 0.00012 30.6 6.3 66 52-129 137-214 (269)
233 COG2216 KdpB High-affinity K+ 82.4 5.7 0.00012 33.5 6.5 60 48-119 447-506 (681)
234 TIGR01460 HAD-SF-IIA Haloacid 82.2 0.64 1.4E-05 34.7 1.0 23 103-125 186-208 (236)
235 PLN03190 aminophospholipid tra 82.2 2.5 5.5E-05 39.1 4.9 43 48-91 726-768 (1178)
236 PRK13762 tRNA-modifying enzyme 81.7 5.7 0.00012 31.3 6.2 31 47-77 141-171 (322)
237 TIGR02463 MPGP_rel mannosyl-3- 81.2 6.5 0.00014 28.6 6.1 34 107-141 180-213 (221)
238 COG2044 Predicted peroxiredoxi 80.8 12 0.00026 25.1 6.6 49 24-74 37-85 (120)
239 TIGR00815 sulP high affinity s 80.6 8.4 0.00018 32.7 7.2 78 2-93 468-552 (563)
240 KOG0323 TFIIF-interacting CTD 80.6 7 0.00015 33.7 6.6 99 46-154 199-302 (635)
241 PF00072 Response_reg: Respons 80.4 12 0.00025 23.5 7.8 39 53-92 58-98 (112)
242 PF06189 5-nucleotidase: 5'-nu 79.8 3.9 8.4E-05 31.3 4.4 65 21-87 121-208 (264)
243 TIGR03278 methan_mark_10 putat 78.5 16 0.00034 29.9 7.8 48 43-91 81-132 (404)
244 cd06539 CIDE_N_A CIDE_N domain 76.8 13 0.00029 23.0 5.4 33 2-35 21-53 (78)
245 KOG3040 Predicted sugar phosph 76.6 1.8 3.8E-05 32.2 1.8 79 50-129 124-205 (262)
246 smart00266 CAD Domains present 76.0 12 0.00026 22.9 5.0 33 2-35 19-51 (74)
247 PF05822 UMPH-1: Pyrimidine 5' 73.9 5.4 0.00012 30.3 3.8 43 47-90 89-131 (246)
248 TIGR03527 selenium_YedF seleni 73.6 22 0.00047 26.0 6.8 53 6-70 105-157 (194)
249 COG4502 5'(3')-deoxyribonucleo 72.2 7.6 0.00016 27.1 3.9 25 48-73 68-92 (180)
250 cd05008 SIS_GlmS_GlmD_1 SIS (S 72.0 7.4 0.00016 25.5 3.9 28 50-77 59-86 (126)
251 KOG2961 Predicted hydrolase (H 72.0 12 0.00026 26.5 4.9 47 21-75 42-90 (190)
252 COG5663 Uncharacterized conser 72.0 2.7 5.9E-05 30.1 1.7 28 48-76 72-99 (194)
253 COG2433 Uncharacterized conser 71.5 15 0.00033 31.4 6.2 59 24-92 257-317 (652)
254 TIGR02495 NrdG2 anaerobic ribo 71.0 13 0.00029 26.4 5.2 30 48-77 74-103 (191)
255 KOG2832 TFIIF-interacting CTD 71.0 27 0.00059 28.2 7.1 73 21-97 188-261 (393)
256 cd05014 SIS_Kpsf KpsF-like pro 70.7 7.1 0.00015 25.7 3.5 29 49-77 59-87 (128)
257 TIGR02826 RNR_activ_nrdG3 anae 68.4 9.7 0.00021 26.4 3.9 33 43-77 69-101 (147)
258 PRK11660 putative transporter; 67.6 47 0.001 28.3 8.5 70 3-91 476-546 (568)
259 COG1501 Alpha-glucosidases, fa 67.0 22 0.00047 31.6 6.5 66 4-74 278-344 (772)
260 cd05710 SIS_1 A subgroup of th 67.0 11 0.00025 24.8 3.9 28 50-77 60-87 (120)
261 cd06591 GH31_xylosidase_XylS X 66.6 32 0.00069 26.9 6.9 59 10-71 28-86 (319)
262 TIGR03365 Bsubt_queE 7-cyano-7 66.5 7.1 0.00015 29.3 3.1 33 45-77 81-113 (238)
263 PRK10076 pyruvate formate lyas 65.2 9.8 0.00021 28.1 3.6 33 43-76 46-79 (213)
264 PF05198 IF3_N: Translation in 65.2 19 0.00041 22.1 4.3 42 20-75 11-52 (76)
265 cd01615 CIDE_N CIDE_N domain, 64.1 32 0.00069 21.3 5.3 33 2-35 21-53 (78)
266 PF02017 CIDE-N: CIDE-N domain 63.8 18 0.00039 22.4 4.0 33 2-35 21-53 (78)
267 TIGR03127 RuMP_HxlB 6-phospho 63.6 13 0.00027 26.3 3.8 29 49-77 84-112 (179)
268 cd06601 GH31_lyase_GLase GLase 63.5 39 0.00084 26.8 6.8 58 10-72 28-85 (332)
269 PF05240 APOBEC_C: APOBEC-like 63.3 8.5 0.00018 22.2 2.3 24 51-74 2-25 (55)
270 COG1899 DYS1 Deoxyhypusine syn 63.2 38 0.00081 26.7 6.5 64 9-89 41-104 (318)
271 TIGR03470 HpnH hopanoid biosyn 63.0 18 0.0004 28.3 4.9 32 45-76 81-112 (318)
272 COG1576 Uncharacterized conser 62.4 46 0.00099 23.5 6.2 63 7-84 53-115 (155)
273 TIGR01482 SPP-subfamily Sucros 61.7 21 0.00045 25.8 4.8 73 66-140 109-182 (225)
274 PRK04531 acetylglutamate kinas 60.3 27 0.00057 28.5 5.5 59 21-93 35-93 (398)
275 PRK00028 infC translation init 59.9 31 0.00067 24.8 5.2 45 16-74 14-58 (177)
276 PRK01158 phosphoglycolate phos 59.3 20 0.00044 26.0 4.4 38 103-141 154-191 (230)
277 cd05006 SIS_GmhA Phosphoheptos 59.3 15 0.00032 25.9 3.6 29 49-77 113-141 (177)
278 TIGR02109 PQQ_syn_pqqE coenzym 59.3 21 0.00045 28.2 4.7 43 47-89 64-107 (358)
279 TIGR02244 HAD-IG-Ncltidse HAD 58.9 5.6 0.00012 31.7 1.4 17 19-35 9-25 (343)
280 cd05017 SIS_PGI_PMI_1 The memb 58.7 14 0.00031 24.2 3.2 25 50-74 56-80 (119)
281 PRK13717 conjugal transfer pro 58.4 4.7 0.0001 27.3 0.8 20 17-36 40-59 (128)
282 PF01380 SIS: SIS domain SIS d 58.1 21 0.00046 23.3 4.0 27 51-77 67-93 (131)
283 TIGR01487 SPP-like sucrose-pho 57.5 24 0.00052 25.5 4.5 73 66-141 109-181 (215)
284 PRK05301 pyrroloquinoline quin 56.4 24 0.00051 28.2 4.6 44 46-89 72-116 (378)
285 TIGR00168 infC translation ini 56.2 43 0.00094 23.8 5.4 40 21-74 7-46 (165)
286 cd06595 GH31_xylosidase_XylS-l 56.0 61 0.0013 25.0 6.7 65 5-73 25-96 (292)
287 PF12965 DUF3854: Domain of un 55.5 29 0.00063 23.6 4.3 53 24-87 72-126 (130)
288 cd05013 SIS_RpiR RpiR-like pro 55.2 22 0.00048 23.2 3.7 27 51-77 74-100 (139)
289 cd07042 STAS_SulP_like_sulfate 55.1 49 0.0011 20.5 6.5 58 22-93 41-99 (107)
290 PRK00192 mannosyl-3-phosphogly 55.0 40 0.00088 25.5 5.5 35 106-141 190-225 (273)
291 cd06537 CIDE_N_B CIDE_N domain 54.9 50 0.0011 20.6 5.0 32 2-35 21-52 (81)
292 PF08934 Rb_C: Rb C-terminal d 54.6 2.9 6.4E-05 28.8 -0.7 27 6-33 86-112 (155)
293 cd05005 SIS_PHI Hexulose-6-pho 54.1 22 0.00048 25.1 3.7 29 49-77 87-115 (179)
294 PF03332 PMM: Eukaryotic phosp 54.0 12 0.00027 27.9 2.4 43 53-97 1-43 (220)
295 TIGR03471 HpnJ hopanoid biosyn 54.0 1.2E+02 0.0025 25.1 8.4 29 4-34 229-257 (472)
296 PF13707 RloB: RloB-like prote 53.9 34 0.00074 24.1 4.7 65 2-83 38-106 (183)
297 cd06603 GH31_GANC_GANAB_alpha 53.6 54 0.0012 25.9 6.2 58 10-72 28-85 (339)
298 cd06600 GH31_MGAM-like This fa 53.5 61 0.0013 25.4 6.4 58 10-72 28-85 (317)
299 cd02071 MM_CoA_mut_B12_BD meth 53.5 28 0.00061 23.0 4.0 41 51-92 65-107 (122)
300 PRK13937 phosphoheptose isomer 53.0 24 0.00051 25.3 3.8 29 49-77 118-146 (188)
301 cd06536 CIDE_N_ICAD CIDE_N dom 52.4 55 0.0012 20.4 5.4 34 2-35 21-55 (80)
302 COG0532 InfB Translation initi 52.1 36 0.00078 28.7 5.0 26 49-74 92-117 (509)
303 PF02590 SPOUT_MTase: Predicte 51.6 81 0.0018 22.1 6.6 67 4-85 49-117 (155)
304 TIGR00441 gmhA phosphoheptose 51.5 23 0.0005 24.5 3.4 28 50-77 92-119 (154)
305 PF02593 dTMP_synthase: Thymid 51.3 80 0.0017 23.5 6.3 67 49-120 60-132 (217)
306 PF05673 DUF815: Protein of un 51.1 1E+02 0.0022 23.5 7.0 85 52-139 68-154 (249)
307 COG0602 NrdG Organic radical a 51.1 24 0.00053 26.0 3.6 30 48-77 83-112 (212)
308 PRK00103 rRNA large subunit me 50.9 85 0.0018 22.1 6.2 62 8-84 54-116 (157)
309 CHL00202 argB acetylglutamate 50.3 66 0.0014 24.8 6.1 72 7-92 10-81 (284)
310 COG5610 Predicted hydrolase (H 49.6 1.1E+02 0.0024 25.8 7.3 78 48-125 97-177 (635)
311 cd04795 SIS SIS domain. SIS (S 49.6 22 0.00048 21.3 2.8 22 50-71 60-81 (87)
312 PF01451 LMWPc: Low molecular 49.4 61 0.0013 21.6 5.2 56 67-123 2-62 (138)
313 cd06592 GH31_glucosidase_KIAA1 49.1 90 0.002 24.2 6.7 59 10-73 34-92 (303)
314 COG0548 ArgB Acetylglutamate k 48.6 60 0.0013 25.0 5.4 60 23-94 3-62 (265)
315 PF04055 Radical_SAM: Radical 48.5 75 0.0016 21.0 5.7 70 49-119 58-137 (166)
316 PRK11145 pflA pyruvate formate 48.3 27 0.00059 25.9 3.6 29 47-75 81-110 (246)
317 PF06117 DUF957: Enterobacteri 48.0 36 0.00077 20.2 3.2 36 16-61 18-53 (65)
318 cd06538 CIDE_N_FSP27 CIDE_N do 47.4 68 0.0015 19.9 5.2 32 2-35 21-52 (79)
319 PLN02591 tryptophan synthase 47.3 1.2E+02 0.0027 23.0 7.8 26 49-74 116-141 (250)
320 TIGR02932 vnfK_nitrog V-contai 47.2 73 0.0016 26.5 6.2 75 2-91 179-258 (457)
321 PF03102 NeuB: NeuB family; I 47.1 60 0.0013 24.5 5.2 67 53-119 102-172 (241)
322 PRK00414 gmhA phosphoheptose i 47.0 34 0.00073 24.7 3.8 28 50-77 124-151 (192)
323 PRK13938 phosphoheptose isomer 46.0 34 0.00074 24.9 3.7 28 50-77 126-153 (196)
324 PF13580 SIS_2: SIS domain; PD 45.9 19 0.00042 24.4 2.3 23 50-72 116-138 (138)
325 PRK05340 UDP-2,3-diacylglucosa 45.7 1.1E+02 0.0025 22.6 6.6 38 50-87 56-93 (241)
326 COG0528 PyrH Uridylate kinase 45.7 41 0.00088 25.4 4.1 53 20-75 3-55 (238)
327 TIGR01485 SPP_plant-cyano sucr 45.7 1.2E+02 0.0027 22.4 6.9 40 101-141 162-201 (249)
328 TIGR02668 moaA_archaeal probab 45.6 62 0.0013 24.8 5.3 43 47-89 67-110 (302)
329 TIGR01890 N-Ac-Glu-synth amino 45.5 87 0.0019 25.6 6.4 71 8-93 5-75 (429)
330 PF01055 Glyco_hydro_31: Glyco 45.0 81 0.0018 25.7 6.1 57 10-71 47-103 (441)
331 PF01976 DUF116: Protein of un 44.9 40 0.00086 23.7 3.7 35 52-89 74-108 (158)
332 cd06416 GH25_Lys1-like Lys-1 i 44.8 80 0.0017 22.6 5.5 64 6-75 71-134 (196)
333 PF03033 Glyco_transf_28: Glyc 44.8 38 0.00082 22.3 3.6 36 49-89 12-47 (139)
334 PF05872 DUF853: Bacterial pro 44.6 57 0.0012 27.3 5.0 69 10-87 241-312 (502)
335 TIGR00640 acid_CoA_mut_C methy 44.3 46 0.001 22.5 3.9 39 53-92 70-110 (132)
336 KOG0208 Cation transport ATPas 44.2 41 0.00089 30.8 4.4 48 48-96 705-752 (1140)
337 CHL00199 infC translation init 43.2 82 0.0018 22.8 5.2 44 18-75 21-64 (182)
338 PF12694 MoCo_carrier: Putativ 43.0 21 0.00046 24.8 2.1 36 26-70 61-96 (145)
339 smart00540 LEM in nuclear memb 42.7 20 0.00044 19.5 1.6 31 54-85 9-39 (44)
340 cd06593 GH31_xylosidase_YicI Y 42.5 1.5E+02 0.0032 22.9 7.0 48 22-72 40-87 (308)
341 cd06589 GH31 The enzymes of gl 42.5 1.5E+02 0.0032 22.4 7.1 63 10-75 28-90 (265)
342 KOG0206 P-type ATPase [General 42.0 36 0.00077 31.7 3.8 46 48-94 651-696 (1151)
343 cd08584 PI-PLCc_GDPD_SF_unchar 41.9 1E+02 0.0022 22.6 5.5 31 53-84 138-172 (192)
344 PRK10886 DnaA initiator-associ 41.8 37 0.00081 24.7 3.4 28 50-77 122-149 (196)
345 COG1180 PflA Pyruvate-formate 41.7 25 0.00054 26.8 2.5 36 42-77 90-125 (260)
346 PF00696 AA_kinase: Amino acid 40.9 30 0.00066 25.4 2.9 58 24-92 2-59 (242)
347 PF05761 5_nucleotid: 5' nucle 40.7 18 0.00038 30.0 1.7 17 19-35 9-25 (448)
348 PRK10126 tyrosine phosphatase; 40.5 1E+02 0.0022 21.0 5.3 55 66-122 5-60 (147)
349 cd06602 GH31_MGAM_SI_GAA This 40.4 1.3E+02 0.0028 23.8 6.4 58 10-72 28-87 (339)
350 PRK04128 1-(5-phosphoribosyl)- 40.3 1.5E+02 0.0033 22.0 6.6 13 23-35 45-57 (228)
351 PRK11557 putative DNA-binding 40.2 40 0.00086 25.5 3.5 29 49-77 187-215 (278)
352 PTZ00333 triosephosphate isome 40.1 1.7E+02 0.0036 22.4 8.4 25 51-75 109-133 (255)
353 PRK01221 putative deoxyhypusin 40.0 1.4E+02 0.003 23.6 6.4 63 8-88 40-103 (312)
354 cd06598 GH31_transferase_CtsZ 40.0 1.1E+02 0.0024 23.9 6.0 61 10-73 28-92 (317)
355 smart00052 EAL Putative diguan 39.9 1.4E+02 0.003 21.4 6.3 35 53-88 135-169 (241)
356 TIGR02493 PFLA pyruvate format 39.8 63 0.0014 23.7 4.4 27 48-74 77-104 (235)
357 PRK11382 frlB fructoselysine-6 39.5 45 0.00097 26.4 3.7 28 50-77 105-132 (340)
358 PRK11337 DNA-binding transcrip 39.1 50 0.0011 25.2 3.9 28 50-77 200-227 (292)
359 PRK13936 phosphoheptose isomer 39.0 51 0.0011 23.8 3.7 28 50-77 124-151 (197)
360 PRK10658 putative alpha-glucos 39.0 1.3E+02 0.0028 26.4 6.7 63 9-74 286-348 (665)
361 cd06599 GH31_glycosidase_Aec37 39.0 1.5E+02 0.0032 23.2 6.5 61 10-73 33-95 (317)
362 COG0279 GmhA Phosphoheptose is 38.1 46 0.001 23.8 3.2 27 51-77 123-149 (176)
363 PRK15482 transcriptional regul 38.1 52 0.0011 25.1 3.8 29 49-77 194-222 (285)
364 PF12261 T_hemolysin: Thermost 38.1 63 0.0014 23.3 4.0 34 56-92 108-141 (179)
365 KOG1050 Trehalose-6-phosphate 37.4 71 0.0015 28.3 4.8 52 19-83 500-552 (732)
366 KOG1321 Protoheme ferro-lyase 37.2 1.8E+02 0.0039 23.3 6.5 48 49-97 138-196 (395)
367 PF02879 PGM_PMM_II: Phosphogl 36.9 12 0.00027 23.8 0.2 33 56-88 13-46 (104)
368 PLN02512 acetylglutamate kinas 36.8 1.8E+02 0.0038 22.8 6.6 69 10-92 37-105 (309)
369 KOG3128 Uncharacterized conser 36.4 33 0.00072 26.4 2.4 39 48-87 138-176 (298)
370 COG0659 SUL1 Sulfate permease 36.1 2E+02 0.0042 24.7 7.2 76 2-93 457-532 (554)
371 smart00226 LMWPc Low molecular 35.9 1.3E+02 0.0027 20.1 5.1 56 67-123 2-58 (140)
372 cd05007 SIS_Etherase N-acetylm 35.8 64 0.0014 24.5 3.9 28 50-77 131-158 (257)
373 TIGR02666 moaA molybdenum cofa 35.7 1.1E+02 0.0023 23.9 5.3 44 47-90 70-115 (334)
374 PRK11778 putative inner membra 35.6 2.3E+02 0.0049 22.6 7.8 22 53-74 143-164 (330)
375 PF12017 Tnp_P_element: Transp 35.5 1.1E+02 0.0023 23.2 5.0 35 54-89 199-233 (236)
376 PLN02825 amino-acid N-acetyltr 35.4 1.5E+02 0.0033 25.2 6.3 70 10-94 7-76 (515)
377 cd01973 Nitrogenase_VFe_beta_l 35.3 1.3E+02 0.0027 25.0 5.8 75 2-91 175-254 (454)
378 PRK02947 hypothetical protein; 35.2 48 0.001 24.9 3.2 26 50-75 119-144 (246)
379 PRK11543 gutQ D-arabinose 5-ph 35.2 59 0.0013 25.1 3.8 28 50-77 102-129 (321)
380 PRK13361 molybdenum cofactor b 35.1 1.1E+02 0.0024 24.0 5.3 44 47-90 72-117 (329)
381 PRK14566 triosephosphate isome 35.0 2.1E+02 0.0045 22.0 7.9 28 48-75 108-139 (260)
382 TIGR01101 V_ATP_synt_F vacuola 34.4 1.4E+02 0.0031 19.8 5.1 43 51-96 46-89 (115)
383 PF00578 AhpC-TSA: AhpC/TSA fa 34.3 61 0.0013 20.7 3.2 37 51-88 46-82 (124)
384 TIGR00238 KamA family protein. 34.1 2.3E+02 0.0049 22.4 6.9 23 49-71 235-257 (331)
385 PF09001 DUF1890: Domain of un 34.1 34 0.00073 23.6 1.9 39 50-92 13-51 (139)
386 cd06604 GH31_glucosidase_II_Ma 33.9 1.8E+02 0.004 22.9 6.4 57 10-71 28-84 (339)
387 cd08564 GDPD_GsGDE_like Glycer 33.6 74 0.0016 24.0 4.0 37 53-91 212-252 (265)
388 PF02635 DrsE: DsrE/DsrF-like 33.6 1.1E+02 0.0023 19.4 4.3 44 24-71 38-82 (122)
389 PRK13962 bifunctional phosphog 33.5 3.3E+02 0.0073 23.9 8.3 27 48-74 494-524 (645)
390 KOG1154 Gamma-glutamyl kinase 33.1 74 0.0016 24.3 3.7 33 51-84 35-67 (285)
391 COG0263 ProB Glutamate 5-kinas 33.1 66 0.0014 26.0 3.6 25 50-74 30-54 (369)
392 cd06535 CIDE_N_CAD CIDE_N doma 33.1 1E+02 0.0022 19.1 3.7 33 2-35 21-53 (77)
393 COG1553 DsrE Uncharacterized c 32.9 1.2E+02 0.0026 20.6 4.4 45 21-71 33-79 (126)
394 COG1366 SpoIIAA Anti-anti-sigm 32.7 81 0.0018 20.5 3.6 56 23-92 45-101 (117)
395 PF00861 Ribosomal_L18p: Ribos 32.7 1.3E+02 0.0027 20.0 4.5 33 20-67 87-119 (119)
396 KOG2965 Arginase [Amino acid t 32.5 70 0.0015 24.8 3.6 29 4-32 216-244 (318)
397 cd08579 GDPD_memb_like Glycero 32.4 84 0.0018 22.8 4.0 38 53-92 179-216 (220)
398 PF15649 Tox-REase-7: Restrict 32.2 74 0.0016 20.1 3.1 27 48-74 54-80 (87)
399 KOG0729 26S proteasome regulat 32.1 92 0.002 24.5 4.2 68 2-76 253-328 (435)
400 TIGR02471 sucr_syn_bact_C sucr 32.0 1.2E+02 0.0026 22.1 4.9 41 101-142 154-194 (236)
401 PRK13602 putative ribosomal pr 31.7 1.2E+02 0.0026 18.7 4.0 38 48-86 11-48 (82)
402 cd02174 CCT CTP:phosphocholine 31.5 1.8E+02 0.0039 20.1 6.0 17 48-64 13-29 (150)
403 TIGR01854 lipid_A_lpxH UDP-2,3 31.4 2.1E+02 0.0046 21.0 7.1 38 51-88 55-92 (231)
404 COG2607 Predicted ATPase (AAA+ 31.3 2.5E+02 0.0054 21.8 6.5 80 53-135 102-183 (287)
405 COG1911 RPL30 Ribosomal protei 31.1 1.3E+02 0.0028 19.5 4.1 38 48-86 19-56 (100)
406 cd04250 AAK_NAGK-C AAK_NAGK-C: 31.0 1.3E+02 0.0029 22.9 5.0 69 9-91 3-71 (279)
407 TIGR00393 kpsF KpsF/GutQ famil 30.8 60 0.0013 24.3 3.1 29 49-77 59-87 (268)
408 KOG0209 P-type ATPase [Inorgan 30.7 51 0.0011 29.9 2.9 42 48-90 675-716 (1160)
409 PRK01018 50S ribosomal protein 30.7 1.3E+02 0.0028 19.2 4.2 38 48-86 16-53 (99)
410 PRK05279 N-acetylglutamate syn 30.3 2.9E+02 0.0064 22.6 7.2 73 6-93 11-83 (441)
411 PF02142 MGS: MGS-like domain 30.2 58 0.0013 20.4 2.5 32 52-89 1-32 (95)
412 TIGR02494 PFLE_PFLC glycyl-rad 30.1 54 0.0012 25.1 2.7 30 46-75 135-165 (295)
413 TIGR02931 anfK_nitrog Fe-only 29.9 1.1E+02 0.0024 25.4 4.7 77 2-91 182-261 (461)
414 KOG1415 Ubiquitin C-terminal h 29.7 92 0.002 23.1 3.6 35 104-138 8-43 (222)
415 KOG0832 Mitochondrial/chloropl 29.5 71 0.0015 24.2 3.1 57 24-94 82-139 (251)
416 COG1213 Predicted sugar nucleo 29.5 1.1E+02 0.0024 23.1 4.2 36 53-88 34-70 (239)
417 cd02072 Glm_B12_BD B12 binding 29.4 73 0.0016 21.6 3.0 15 51-65 65-79 (128)
418 PF13756 Stimulus_sens_1: Stim 29.4 64 0.0014 21.2 2.7 18 18-35 15-32 (112)
419 cd06525 GH25_Lyc-like Lyc mura 29.3 1.3E+02 0.0027 21.4 4.4 58 8-75 70-128 (184)
420 KOG0739 AAA+-type ATPase [Post 29.3 62 0.0013 25.9 2.9 27 1-29 207-233 (439)
421 COG0149 TpiA Triosephosphate i 29.3 82 0.0018 24.0 3.5 40 29-75 89-132 (251)
422 PF02579 Nitro_FeMo-Co: Dinitr 29.2 88 0.0019 19.0 3.2 67 18-91 9-78 (94)
423 PF11848 DUF3368: Domain of un 29.2 51 0.0011 18.0 1.8 19 49-67 17-35 (48)
424 PRK08508 biotin synthase; Prov 29.1 2.6E+02 0.0057 21.3 8.6 46 49-95 73-120 (279)
425 PF13439 Glyco_transf_4: Glyco 29.0 83 0.0018 20.9 3.4 25 53-77 18-42 (177)
426 PRK05441 murQ N-acetylmuramic 28.8 87 0.0019 24.4 3.7 28 50-77 144-171 (299)
427 PF03465 eRF1_3: eRF1 domain 3 28.8 1.2E+02 0.0026 19.9 3.9 33 53-87 71-103 (113)
428 cd04256 AAK_P5CS_ProBA AAK_P5C 28.6 70 0.0015 24.7 3.1 58 22-85 8-67 (284)
429 PF14336 DUF4392: Domain of un 28.6 1.8E+02 0.0039 22.6 5.4 41 49-89 61-101 (291)
430 PF13686 DrsE_2: DsrE/DsrF/Drs 28.5 70 0.0015 22.2 2.8 22 51-72 91-112 (148)
431 PRK11302 DNA-binding transcrip 28.4 86 0.0019 23.7 3.6 23 50-72 188-210 (284)
432 TIGR02803 ExbD_1 TonB system t 28.3 62 0.0014 21.3 2.5 24 49-72 97-121 (122)
433 PRK10892 D-arabinose 5-phospha 28.3 69 0.0015 24.9 3.1 28 50-77 107-134 (326)
434 COG0394 Wzb Protein-tyrosine-p 28.3 1.7E+02 0.0037 20.0 4.7 56 65-123 4-62 (139)
435 PRK13111 trpA tryptophan synth 28.3 2.7E+02 0.0059 21.2 7.1 29 49-77 127-156 (258)
436 PRK06186 hypothetical protein; 28.1 83 0.0018 23.6 3.3 43 26-75 51-94 (229)
437 cd04906 ACT_ThrD-I_1 First of 28.1 62 0.0014 19.8 2.3 24 51-74 53-76 (85)
438 TIGR00761 argB acetylglutamate 28.0 1.2E+02 0.0025 22.4 4.1 39 50-90 15-53 (231)
439 PF08269 Cache_2: Cache domain 27.8 93 0.002 19.3 3.2 30 6-36 42-71 (95)
440 PF00875 DNA_photolyase: DNA p 27.8 34 0.00074 23.7 1.2 42 48-90 50-91 (165)
441 PF08774 VRR_NUC: VRR-NUC doma 27.7 81 0.0018 19.8 2.9 26 47-72 73-98 (100)
442 PF04007 DUF354: Protein of un 27.7 1E+02 0.0022 24.6 3.9 35 55-91 18-52 (335)
443 COG1433 Uncharacterized conser 27.5 1.4E+02 0.003 20.1 4.0 68 20-91 22-90 (121)
444 cd08573 GDPD_GDE1 Glycerophosp 27.5 1.1E+02 0.0023 23.2 3.9 36 53-89 217-252 (258)
445 PRK10430 DNA-binding transcrip 27.4 2.5E+02 0.0053 20.4 7.1 37 54-91 65-103 (239)
446 PRK00942 acetylglutamate kinas 27.4 2.1E+02 0.0046 21.8 5.6 58 23-92 24-81 (283)
447 cd03018 PRX_AhpE_like Peroxire 27.3 1.3E+02 0.0029 19.9 4.1 38 50-88 48-85 (149)
448 cd03409 Chelatase_Class_II Cla 27.0 97 0.0021 19.2 3.2 17 50-66 44-60 (101)
449 COG5190 FCP1 TFIIF-interacting 27.0 87 0.0019 25.6 3.5 75 18-94 208-296 (390)
450 PF14824 Sirohm_synth_M: Siroh 27.0 94 0.002 15.5 2.8 22 62-84 2-23 (30)
451 TIGR00274 N-acetylmuramic acid 26.9 1E+02 0.0022 24.0 3.7 28 50-77 139-166 (291)
452 cd04252 AAK_NAGK-fArgBP AAK_NA 26.9 2.7E+02 0.0059 20.8 6.1 41 51-93 15-55 (248)
453 TIGR02647 DNA conserved hypoth 26.9 52 0.0011 20.2 1.7 34 25-65 15-48 (77)
454 PLN02951 Molybderin biosynthes 26.7 1.5E+02 0.0032 23.9 4.7 44 47-90 117-162 (373)
455 COG1222 RPT1 ATP-dependent 26S 26.6 1.2E+02 0.0025 24.8 4.0 68 2-76 227-302 (406)
456 PF11909 NdhN: NADH-quinone ox 26.5 1.5E+02 0.0032 20.7 4.0 36 56-91 34-69 (154)
457 PRK11391 etp phosphotyrosine-p 26.5 2.1E+02 0.0046 19.4 5.1 54 66-122 5-60 (144)
458 PF14597 Lactamase_B_5: Metall 26.4 64 0.0014 23.6 2.3 42 47-88 37-79 (199)
459 cd03017 PRX_BCP Peroxiredoxin 26.4 1.5E+02 0.0033 19.3 4.3 38 51-89 44-81 (140)
460 PF08444 Gly_acyl_tr_C: Aralky 26.2 1.6E+02 0.0034 18.7 3.9 35 53-88 41-75 (89)
461 PF01990 ATP-synt_F: ATP synth 26.2 1.4E+02 0.003 18.7 3.7 35 51-86 28-63 (95)
462 PRK00648 Maf-like protein; Rev 26.0 1.3E+02 0.0027 21.9 3.9 23 64-89 2-24 (191)
463 PF13911 AhpC-TSA_2: AhpC/TSA 25.9 1.6E+02 0.0035 18.8 4.2 33 55-88 4-36 (115)
464 TIGR03820 lys_2_3_AblA lysine- 25.8 3.5E+02 0.0076 22.4 6.7 46 48-94 229-283 (417)
465 PLN02920 pantothenate kinase 1 25.7 3.6E+02 0.0079 22.2 6.7 70 18-88 14-120 (398)
466 TIGR00246 tRNA_RlmH_YbeA rRNA 25.7 2.4E+02 0.0051 19.7 6.0 61 8-84 53-113 (153)
467 COG1737 RpiR Transcriptional r 25.7 88 0.0019 24.0 3.2 27 51-77 191-217 (281)
468 PF05221 AdoHcyase: S-adenosyl 25.7 1.2E+02 0.0027 23.4 3.9 38 48-86 51-88 (268)
469 PRK09454 ugpQ cytoplasmic glyc 25.6 1.2E+02 0.0025 22.7 3.8 37 53-91 198-234 (249)
470 KOG0023 Alcohol dehydrogenase, 25.6 2.7E+02 0.0059 22.4 5.8 37 56-94 197-233 (360)
471 PRK11024 colicin uptake protei 25.6 2.2E+02 0.0048 19.3 6.3 24 49-72 115-139 (141)
472 COG2185 Sbm Methylmalonyl-CoA 25.6 96 0.0021 21.6 3.0 12 5-16 29-40 (143)
473 KOG1626 Inorganic pyrophosphat 25.4 44 0.00095 25.6 1.4 48 12-62 144-191 (279)
474 COG0836 {ManC} Mannose-1-phosp 25.1 2.7E+02 0.0059 22.2 5.7 78 55-136 39-118 (333)
475 cd08574 GDPD_GDE_2_3_6 Glycero 24.9 1.3E+02 0.0028 22.6 3.9 38 53-92 212-249 (252)
476 PRK00770 deoxyhypusine synthas 24.9 2E+02 0.0044 23.4 5.2 64 9-89 37-102 (384)
477 cd06594 GH31_glucosidase_YihQ 24.8 97 0.0021 24.3 3.4 26 48-73 68-93 (317)
478 PRK00805 putative deoxyhypusin 24.8 3.3E+02 0.0071 21.7 6.2 38 49-89 58-96 (329)
479 PF13394 Fer4_14: 4Fe-4S singl 24.7 37 0.0008 21.9 0.9 26 51-76 65-92 (119)
480 PF03807 F420_oxidored: NADP o 24.7 1.7E+02 0.0036 17.8 3.9 33 55-88 13-48 (96)
481 PLN00124 succinyl-CoA ligase [ 24.7 3.4E+02 0.0073 22.4 6.5 72 4-88 330-401 (422)
482 COG1763 MobB Molybdopterin-gua 24.7 94 0.002 21.9 3.0 19 53-71 19-37 (161)
483 PF01113 DapB_N: Dihydrodipico 24.6 92 0.002 20.6 2.8 36 51-87 78-113 (124)
484 COG3266 DamX Uncharacterized p 24.5 2.8E+02 0.0061 21.5 5.6 68 51-119 198-271 (292)
485 PLN03231 putative alpha-galact 24.4 3.1E+02 0.0068 22.1 6.1 25 52-76 87-111 (357)
486 TIGR00423 radical SAM domain p 24.3 1.2E+02 0.0026 23.5 3.8 41 27-68 260-300 (309)
487 KOG2826 Actin-related protein 24.3 1.1E+02 0.0023 23.4 3.2 29 7-35 14-44 (301)
488 cd03466 Nitrogenase_NifN_2 Nit 24.2 2.9E+02 0.0062 22.6 6.1 76 2-90 168-249 (429)
489 cd04728 ThiG Thiazole synthase 24.2 3.3E+02 0.0071 20.8 6.5 66 48-118 104-174 (248)
490 KOG0541 Alkyl hydroperoxide re 24.2 2.7E+02 0.0059 19.8 6.4 66 21-94 43-108 (171)
491 PRK05772 translation initiatio 23.9 3.1E+02 0.0068 22.2 6.1 18 104-121 265-282 (363)
492 PF08445 FR47: FR47-like prote 23.9 1.8E+02 0.0039 17.7 4.6 36 54-90 44-79 (86)
493 cd08582 GDPD_like_2 Glyceropho 23.8 1.4E+02 0.003 21.9 3.9 38 53-92 190-227 (233)
494 PLN02763 hydrolase, hydrolyzin 23.5 3.6E+02 0.0078 25.0 6.9 57 10-71 205-261 (978)
495 KOG2599 Pyridoxal/pyridoxine/p 23.4 67 0.0014 25.0 2.1 27 50-76 166-192 (308)
496 TIGR01456 CECR5 HAD-superfamil 23.4 1.1E+02 0.0024 23.9 3.4 16 103-118 231-246 (321)
497 TIGR02804 ExbD_2 TonB system t 23.3 1E+02 0.0022 20.3 2.8 11 24-34 53-63 (121)
498 PRK15492 triosephosphate isome 23.3 3.4E+02 0.0075 20.7 8.0 28 48-75 107-138 (260)
499 cd08555 PI-PLCc_GDPD_SF Cataly 23.3 1.5E+02 0.0032 20.9 3.8 38 53-92 138-176 (179)
500 PRK10949 protease 4; Provision 23.3 1.3E+02 0.0027 26.2 4.0 89 18-123 109-201 (618)
No 1
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.77 E-value=2.7e-18 Score=129.45 Aligned_cols=81 Identities=9% Similarity=0.188 Sum_probs=75.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|+++.
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 4689999999999999999999999999888 799999999999999999999988999999999999999999998875
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
+|
T Consensus 186 ~v 187 (248)
T PLN02770 186 VF 187 (248)
T ss_pred EE
Confidence 44
No 2
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.76 E-value=4.5e-18 Score=125.54 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=73.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
.++||+.++|+.|+++|++++|+||+.... +...++.+++..+|+.++++++.+..||+|+++..+++++++.|+++++
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 172 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM 172 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence 589999999999999999999999998777 6889999999999999999999999999999999999999999988654
Q ss_pred E
Q 031610 128 I 128 (156)
Q Consensus 128 v 128 (156)
|
T Consensus 173 i 173 (221)
T TIGR02253 173 V 173 (221)
T ss_pred E
Confidence 3
No 3
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.76 E-value=4.9e-18 Score=126.29 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=75.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++.+..||+|+++..+++++++.|++|+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 4589999999999999999999999998887 688899999999999999998889999999999999999999999986
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 171 ~ig 173 (224)
T PRK14988 171 FID 173 (224)
T ss_pred EEc
Confidence 544
No 4
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.76 E-value=4.2e-18 Score=125.39 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=75.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|++|+++|++++|+||+.... +...++.+|+..+|+.++++++....||+|.++..+++++++.|++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 4689999999999999999999999999887 799999999999999999988888899999999999999999988876
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 160 ~iG 162 (214)
T PRK13288 160 MVG 162 (214)
T ss_pred EEC
Confidence 543
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.76 E-value=5.4e-18 Score=128.65 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=75.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|+++.
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 4689999999999999999999999999888 799999999999999999999888899999999999999999999876
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
+|
T Consensus 187 ~I 188 (260)
T PLN03243 187 VF 188 (260)
T ss_pred EE
Confidence 54
No 6
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=124.03 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=80.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|.+|+++|++++|+||++... +...++.+|+..+|+.++++++....||+|.++..++++++..|++..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 3689999999999999999999999999998 799999999999999999988889999999999999999999975554
Q ss_pred eEeeehhhhHHHhhcccc
Q 031610 127 SIFMFQQVMIEMFQNRHS 144 (156)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~ 144 (156)
|.+|....+.-++..
T Consensus 167 ---~VGDs~~Di~aA~~A 181 (220)
T COG0546 167 ---MVGDSLNDILAAKAA 181 (220)
T ss_pred ---EECCCHHHHHHHHHc
Confidence 455554444433333
No 7
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.75 E-value=2.2e-18 Score=127.93 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=75.8
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..+.||+.++|+.|+++|++++++|++++.. +...++.+|+..+|+.++++++....||+|++|..+++++|+.|++|.
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 4689999999999999999999999999887 799999999999999999999888899999999999999999999996
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
.|
T Consensus 164 vi 165 (221)
T COG0637 164 VV 165 (221)
T ss_pred EE
Confidence 54
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.75 E-value=7.4e-18 Score=125.60 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=74.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++|++|+++.
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 4689999999999999999999999999877 688899999999999888888788899999999999999999999876
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 173 ~IG 175 (229)
T PRK13226 173 YVG 175 (229)
T ss_pred EeC
Confidence 544
No 9
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.73 E-value=2e-17 Score=122.54 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=75.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||..... +...++.+++..+|+.++++++.+..||+|+++..+++++|+.|+++.
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 4689999999999999999999999999887 699999999999999999988888999999999999999999998876
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 170 ~ig 172 (222)
T PRK10826 170 ALE 172 (222)
T ss_pred EEc
Confidence 443
No 10
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.73 E-value=1.9e-17 Score=120.51 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
.+++|++.++|+.|+++|++++++||.+... +...++.+|+..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 3578999999999999999999999999887 688999999999999999999999999999999999999999998875
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 170 ~vg 172 (198)
T TIGR01428 170 FVA 172 (198)
T ss_pred EEe
Confidence 433
No 11
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.72 E-value=3.5e-17 Score=129.30 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=76.5
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+|+..+|+.++++++....||+|+++..+++++++.|++|.
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 4689999999999999999999999999888 799999999999999999999988899999999999999999999986
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 294 ~IG 296 (381)
T PLN02575 294 VFG 296 (381)
T ss_pred EEc
Confidence 543
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.72 E-value=4.5e-17 Score=120.42 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=70.7
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
...++||+.++|+.|+++|++++|+||++... ....++..++ .+|+.++++++....||+|.++..+++++|+.|+++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 34689999999999999999999999998776 5777888887 456777777777889999999999999999999998
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
.+|+
T Consensus 159 l~ig 162 (218)
T PRK11587 159 VVVE 162 (218)
T ss_pred EEEe
Confidence 6553
No 13
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.72 E-value=1.8e-17 Score=113.19 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=78.9
Q ss_pred ceEEEecCCccccccccccccCC---CcccCCcHHHHHHHHHHCCCeEEEEcCC-CChhHHHHHHHHcC-------CCCC
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDE---IPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IHSM 91 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~---~~~l~~~~~~~L~~L~~~G~~v~i~T~~-~~~~~~~~~l~~l~-------l~~~ 91 (156)
|+++||||||||+.+....+... ..+++||+.++|+.|+++|++++++||+ .... +...++.++ +..+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~~~ 79 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLAEY 79 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhHhh
Confidence 57999999999985321011100 0047999999999999999999999999 6555 678888888 7888
Q ss_pred CceEEEecccCCCCCCHHHHHHHHHHhC--CCCcCceeE
Q 031610 92 FVPMVVIYMYTKDSSNASSSESTCAIFH--FHPKRSCSI 128 (156)
Q Consensus 92 f~~~~~~~~~~~~kp~p~~~~~~~~~~~--~~~~~~~~v 128 (156)
|+.+++++ .+|+|+++..+++++| +.|+++++|
T Consensus 80 f~~~~~~~----~~pkp~~~~~a~~~lg~~~~p~~~l~i 114 (128)
T TIGR01681 80 FDPLTIGY----WLPKSPRLVEIALKLNGVLKPKSILFV 114 (128)
T ss_pred hhhhhhcC----CCcHHHHHHHHHHHhcCCCCcceEEEE
Confidence 88877654 3689999999999999 999987643
No 14
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.72 E-value=6.2e-17 Score=119.51 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=74.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC--CCCceEEEecccCCCCCCHHHHHHHHHHhCCC-Cc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVVIYMYTKDSSNASSSESTCAIFHFH-PK 123 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~--~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~ 123 (156)
.+++||+.++|+.|+++|++++|+||+.... +...++.+++. .+|+.++++++....||+|+.+..+++++++. |+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 4699999999999999999999999999888 79999999998 89999999888888999999999999999997 67
Q ss_pred CceeEe
Q 031610 124 RSCSIF 129 (156)
Q Consensus 124 ~~~~v~ 129 (156)
++++|+
T Consensus 165 ~~~~ig 170 (220)
T TIGR03351 165 SVAVAG 170 (220)
T ss_pred HeEEeC
Confidence 765544
No 15
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.71 E-value=5.9e-17 Score=118.87 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=74.5
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|+.+..+++++++.|+++.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 4689999999999999999999999998877 799999999999999999888888899999999999999999998865
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
.|
T Consensus 163 ~i 164 (213)
T TIGR01449 163 YV 164 (213)
T ss_pred Ee
Confidence 43
No 16
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.70 E-value=5.7e-17 Score=115.95 Aligned_cols=115 Identities=26% Similarity=0.326 Sum_probs=90.7
Q ss_pred CCceEEEecCCcccccccccc-----------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC-CChhHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTF 82 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~-----------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~-~~~~~~~~~ 82 (156)
++++++||+|+|||+++...- ..+....++||+.++|+.|+++|++++++||+ .... ++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~ 79 (174)
T TIGR01685 1 LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEI 79 (174)
T ss_pred CCcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHH
Confidence 368999999999999866521 33444579999999999999999999999988 7666 6889
Q ss_pred HHHcCCC---------CCCceEEEecccCCCCCCHHHHHHHHHHh--CCCCcCceeEeeehhhhHHHh
Q 031610 83 LHKLGIH---------SMFVPMVVIYMYTKDSSNASSSESTCAIF--HFHPKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 83 l~~l~l~---------~~f~~~~~~~~~~~~kp~p~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~ 139 (156)
++.+++. .+|+.++++++....||.+..+..+.+.+ ++.|+++. |++|....+.
T Consensus 80 L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l---~VgDs~~di~ 144 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQIL---FFDDRTDNVR 144 (174)
T ss_pred HHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeE---EEcChhHhHH
Confidence 9999998 99999998877666677777777776666 78898875 4455544333
No 17
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.70 E-value=1e-16 Score=120.95 Aligned_cols=81 Identities=6% Similarity=-0.029 Sum_probs=72.6
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCC-CcCc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFH-PKRS 125 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~~~ 125 (156)
.++||+.++|+.|+++|++++|+||++... +...++.+++..+| +.++++++....||+|+++..+++++++. |+++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 579999999999999999999999999887 79999999999986 78888888888999999999999999995 7776
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
.+|+
T Consensus 178 l~IG 181 (253)
T TIGR01422 178 VKVG 181 (253)
T ss_pred EEEC
Confidence 5443
No 18
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=1.4e-16 Score=121.60 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++....||+|.+++.+++++++.|+++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 3579999999999999999999999999877 688999999999999988888888899999999999999999998886
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 179 ~IG 181 (272)
T PRK13223 179 FVG 181 (272)
T ss_pred EEC
Confidence 544
No 19
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.70 E-value=9.8e-17 Score=117.39 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=74.5
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|++|+++|++++|+||+.... +...++.+++..+|+.++++++....||+|..+..+++++++.|+++.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 4689999999999999999999999999887 799999999999999998888888899999999999999999998875
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 153 ~ig 155 (205)
T TIGR01454 153 MVG 155 (205)
T ss_pred EEc
Confidence 443
No 20
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.69 E-value=4.7e-16 Score=110.70 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=79.5
Q ss_pred CceEEEecCCcccccccc--ccccCCCc-ccCCcHHHHHHHHHHCCCeEEEEcCCCCh------------hHHHHHHHHc
Q 031610 22 PRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL 86 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~--~~~~~~~~-~l~~~~~~~L~~L~~~G~~v~i~T~~~~~------------~~~~~~l~~l 86 (156)
.|+++||+||||+...-. .....+.+ .++||+.++|++|+++|++++|+||++.. . +...++.+
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~ 91 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL 91 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence 689999999999973110 00011111 26899999999999999999999998753 3 46778999
Q ss_pred CCCCCCceEEEecccCCCCCCHHHHHHHHHHhC--CCCcCceeEe
Q 031610 87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH--FHPKRSCSIF 129 (156)
Q Consensus 87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~--~~~~~~~~v~ 129 (156)
|+.. ..+++++.....||+|+++..++++++ +.++++++|+
T Consensus 92 gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VG 134 (166)
T TIGR01664 92 KVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVG 134 (166)
T ss_pred CCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEE
Confidence 9853 445555555668999999999999999 8898887665
No 21
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.68 E-value=3e-16 Score=107.33 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=77.6
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC--------ChhHHHHHHHHcCCCCCCce
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~--------~~~~~~~~l~~l~l~~~f~~ 94 (156)
|+++||+||||++.-... .......++|++.++|+.|+++|++++++||++ ... +...++.+++. +..
T Consensus 1 k~~~~D~dgtL~~~~~~~-~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~--~~~ 76 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYV-DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVP--IDV 76 (132)
T ss_pred CEEEEeCCCceecCCCCC-CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCC--EEE
Confidence 679999999999631111 111123689999999999999999999999998 666 68889999986 333
Q ss_pred EEEecccCCCCCCHHHHHHHHHHh-CCCCcCceeEe
Q 031610 95 MVVIYMYTKDSSNASSSESTCAIF-HFHPKRSCSIF 129 (156)
Q Consensus 95 ~~~~~~~~~~kp~p~~~~~~~~~~-~~~~~~~~~v~ 129 (156)
.+... ...||+|+.++.+++++ +++|+++.+|+
T Consensus 77 ~~~~~--~~~KP~~~~~~~~~~~~~~~~~~~~v~IG 110 (132)
T TIGR01662 77 LYACP--HCRKPKPGMFLEALKRFNEIDPEESVYVG 110 (132)
T ss_pred EEECC--CCCCCChHHHHHHHHHcCCCChhheEEEc
Confidence 33332 56799999999999999 59999876544
No 22
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.67 E-value=2.2e-16 Score=113.85 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=75.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
.++|+ .++|..|+++ ++++|+||++... +...++.+++..+|+.++++++....||+|+++..+++++++.|++++.
T Consensus 88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 88 EPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 46774 6899999775 8999999999887 7999999999999999999998889999999999999999999887654
Q ss_pred EeeehhhhHHHhhccccc
Q 031610 128 IFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 128 v~~~~~~~~~~~~~~~~~ 145 (156)
++|....+-.++...
T Consensus 165 ---igDs~~di~aA~~aG 179 (188)
T PRK10725 165 ---FEDADFGIQAARAAG 179 (188)
T ss_pred ---EeccHhhHHHHHHCC
Confidence 455544444444433
No 23
>PLN02940 riboflavin kinase
Probab=99.67 E-value=1.9e-16 Score=126.10 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=73.9
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH-HcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~-~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
..++||+.++|+.|+++|++++|+||++... +...++ ..++..+|+.++++++....||+|+++..+++++++.|+++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 3589999999999999999999999999887 677776 68999999999999999999999999999999999999987
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
+.|+
T Consensus 171 l~VG 174 (382)
T PLN02940 171 LVIE 174 (382)
T ss_pred EEEe
Confidence 6543
No 24
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.67 E-value=2.8e-16 Score=112.83 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=71.6
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++++||+ .. ++..++.+++..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 469999999999999999999999998 45 688999999999999999888888899999999999999999988875
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
.|
T Consensus 164 ~I 165 (185)
T TIGR02009 164 VF 165 (185)
T ss_pred EE
Confidence 43
No 25
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.67 E-value=5.4e-16 Score=113.19 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=71.9
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
.++||+.++|+.|+++|++++|+||... . ....++.+++..+|+.++++++.+..||+|+++..+++.+++.|++++.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 4789999999999999999999999875 4 4788899999999999999988899999999999999999999998765
Q ss_pred Ee
Q 031610 128 IF 129 (156)
Q Consensus 128 v~ 129 (156)
|+
T Consensus 183 Ig 184 (203)
T TIGR02252 183 IG 184 (203)
T ss_pred EC
Confidence 44
No 26
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.67 E-value=9.6e-16 Score=113.30 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=74.1
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++++||+.... +...++.+++..+|+.++++++....||+|..+..+++++++.++++.
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 4699999999999999999999999999877 689999999999999988888888899999999999999999988876
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
.|+
T Consensus 171 ~ig 173 (226)
T PRK13222 171 FVG 173 (226)
T ss_pred EEC
Confidence 443
No 27
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.66 E-value=8.9e-16 Score=110.52 Aligned_cols=107 Identities=12% Similarity=-0.033 Sum_probs=80.8
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHH
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLH 84 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~ 84 (156)
.|+|+++||+||||.-.............++||+.++|+.|+++|++++|+||++. .. ....++
T Consensus 1 ~~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~ 79 (181)
T PRK08942 1 KSMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEK-MDWSLA 79 (181)
T ss_pred CCccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHH
Confidence 37899999999998765433333333456999999999999999999999999863 11 233455
Q ss_pred HcCCCCCCceEEEe-----cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 85 KLGIHSMFVPMVVI-----YMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 85 ~l~l~~~f~~~~~~-----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
.+++ .|+.++.+ ++.+..||+|.++..+++.+++.++++++|+
T Consensus 80 ~~g~--~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~Vg 127 (181)
T PRK08942 80 DRGG--RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVG 127 (181)
T ss_pred HcCC--ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEe
Confidence 6665 36665532 3456789999999999999999999887654
No 28
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.66 E-value=3.4e-16 Score=109.22 Aligned_cols=106 Identities=15% Similarity=0.006 Sum_probs=76.8
Q ss_pred ceEEEecCCcccccccc-ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHHHc
Q 031610 23 RLVVFDLDYTLWPFYCE-CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL 86 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~-~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~~l 86 (156)
++++||+||||.++... ........+++||+.++|+.|+++|++++|+||++. .. +...++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 79 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL 79 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence 47999999999985321 111112236899999999999999999999999874 23 46677888
Q ss_pred CCCCCCce--EE-EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 87 GIHSMFVP--MV-VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 87 ~l~~~f~~--~~-~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
++.....+ .. +++.....||+|++++.+++.++++++++.+|+
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IG 125 (147)
T TIGR01656 80 GVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVG 125 (147)
T ss_pred CCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEc
Confidence 87522111 11 134455679999999999999999998876544
No 29
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.66 E-value=7e-16 Score=117.37 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=70.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC-ceEEEecccCCCCCCHHHHHHHHHHhCCC-CcCc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPMVVIYMYTKDSSNASSSESTCAIFHFH-PKRS 125 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-~~~~ 125 (156)
.++||+.++|+.|+++|++++|+||++... +...++.+++..+| +.++++++....||+|+++..+++++++. ++++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 579999999999999999999999999887 68889999888875 77888888888999999999999999996 5666
Q ss_pred eeE
Q 031610 126 CSI 128 (156)
Q Consensus 126 ~~v 128 (156)
.+|
T Consensus 180 l~I 182 (267)
T PRK13478 180 VKV 182 (267)
T ss_pred EEE
Confidence 544
No 30
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.66 E-value=4.5e-16 Score=111.76 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=70.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
.++||+.++|+.|+++|++++|+||+.. ....++.+++..+|+.++++++.+..||+|+.+..+++++++.|+++++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 5889999999999999999999998752 4677899999999999998888889999999999999999999888765
Q ss_pred Ee
Q 031610 128 IF 129 (156)
Q Consensus 128 v~ 129 (156)
|+
T Consensus 164 vg 165 (185)
T TIGR01990 164 IE 165 (185)
T ss_pred Ee
Confidence 44
No 31
>PRK09449 dUMP phosphatase; Provisional
Probab=99.66 E-value=6.3e-16 Score=114.41 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=70.4
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC-cCce
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP-KRSC 126 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~~ 126 (156)
.++||+.++|+.|+ +|++++|+||+.... +...++.+|+..+|+.++++++.+..||+|+++..+++++++.+ ++++
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 58999999999999 679999999998777 68889999999999999999999999999999999999999865 5554
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
.|
T Consensus 173 ~v 174 (224)
T PRK09449 173 MV 174 (224)
T ss_pred EE
Confidence 33
No 32
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.65 E-value=1.6e-15 Score=108.81 Aligned_cols=103 Identities=11% Similarity=-0.011 Sum_probs=75.7
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC---------------hhHHHHHHHHcC
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKLG 87 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~---------------~~~~~~~l~~l~ 87 (156)
|++|||+||||.... ......+...++||+.++|+.|+++|++++|+||++. .. ....+..++
T Consensus 2 ~~~~~D~Dgtl~~~~-~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 79 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEW-MDWSLAERD 79 (176)
T ss_pred CEEEEeCCCCEeCCC-CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHHcC
Confidence 689999999999421 1112223456899999999999999999999999984 12 234556666
Q ss_pred CCCCCceEEEe-----------cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 88 IHSMFVPMVVI-----------YMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 88 l~~~f~~~~~~-----------~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
+. |+.++.+ ++....||+|+++..++++++++++++++|+
T Consensus 80 ~~--~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VG 130 (176)
T TIGR00213 80 VD--LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVG 130 (176)
T ss_pred CC--ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEc
Confidence 54 5554432 2344679999999999999999999987544
No 33
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.64 E-value=5.6e-16 Score=109.28 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR 124 (156)
Q Consensus 45 ~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 124 (156)
...+++|++.++|+.|+++|++++++||.+... +...++.+++..+|+.++++++.+..||+|..+..+++++++.|.+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccc-ccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 445799999999999999999999999999877 6899999999999999999999999999999999999999999987
Q ss_pred ceeEeeehhhhH
Q 031610 125 SCSIFMFQQVMI 136 (156)
Q Consensus 125 ~~~v~~~~~~~~ 136 (156)
+. +++++..
T Consensus 153 ~~---~vgD~~~ 161 (176)
T PF13419_consen 153 IL---FVGDSPS 161 (176)
T ss_dssp EE---EEESSHH
T ss_pred EE---EEeCCHH
Confidence 64 4444443
No 34
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.64 E-value=1.5e-15 Score=107.54 Aligned_cols=104 Identities=15% Similarity=-0.010 Sum_probs=81.7
Q ss_pred ceEEEecCCcccccccc--ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---------------ChhHHHHHHHH
Q 031610 23 RLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK 85 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~--~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---------------~~~~~~~~l~~ 85 (156)
|+++||.||||+...-. ........+++||+.++|+.|+++|++++|+||++ ... +...++.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~ 80 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS 80 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence 68999999999973110 01112234689999999999999999999999974 234 5777889
Q ss_pred cCCCCCCceEE-E----ecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 86 LGIHSMFVPMV-V----IYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 86 l~l~~~f~~~~-~----~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
+|+. |+.++ + +++....||+|.++..+++.++++++++++|+
T Consensus 81 ~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IG 127 (161)
T TIGR01261 81 QGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIG 127 (161)
T ss_pred CCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEe
Confidence 9996 76554 3 46777889999999999999999999987665
No 35
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=113.02 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=74.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
.+++|++.++|+.++++ ++++++||+.... ....++.+|+..+|+.++++++.+..||+|.+|..+++++|+.|+++.
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 57899999999999999 9999999988777 699999999999999999999999999999999999999999998876
Q ss_pred eE
Q 031610 127 SI 128 (156)
Q Consensus 127 ~v 128 (156)
.|
T Consensus 176 ~V 177 (229)
T COG1011 176 FV 177 (229)
T ss_pred EE
Confidence 44
No 36
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.63 E-value=2e-15 Score=111.40 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh-CCCCcCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF-HFHPKRS 125 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~-~~~~~~~ 125 (156)
.+++||+.++|+.|+++ ++++++||+.... +...++.+++..+|+.++++++.+..||+|.++..+++++ ++.|+++
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence 36899999999999999 9999999999887 6889999999999999999988899999999999999999 9999886
Q ss_pred eeE
Q 031610 126 CSI 128 (156)
Q Consensus 126 ~~v 128 (156)
..|
T Consensus 174 v~i 176 (224)
T TIGR02254 174 LMI 176 (224)
T ss_pred EEE
Confidence 543
No 37
>PRK06769 hypothetical protein; Validated
Probab=99.63 E-value=1.6e-15 Score=108.67 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=78.6
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--------hHHHHHHHHcCCCCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSMF 92 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--------~~~~~~l~~l~l~~~f 92 (156)
.+++|++|.||||-. +..... .....++||+.++|++|+++|++++|+||++.. . ....++.++++.+|
T Consensus 3 ~~~~~~~d~d~~~~~-~~~~~~-~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~~ 79 (173)
T PRK06769 3 NIQAIFIDRDGTIGG-DTTIHY-PGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDIY 79 (173)
T ss_pred CCcEEEEeCCCcccC-CCCCCC-HHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEEE
Confidence 579999999999953 222111 123468999999999999999999999998731 1 23346667766555
Q ss_pred ceEE-EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 93 VPMV-VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 93 ~~~~-~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
.... ++++....||+|+++..+++++++.|+++++|+
T Consensus 80 ~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IG 117 (173)
T PRK06769 80 LCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIG 117 (173)
T ss_pred ECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEc
Confidence 4333 344567789999999999999999999986554
No 38
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.61 E-value=4.9e-15 Score=107.89 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
..++|+.|+++|++++|+||++... +...++.+|+..+|+.++++++... ||+|..+..+++.+++.+++++.|+
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEe
Confidence 4899999999999999999999888 7999999999999999988888776 9999999999999999998876544
No 39
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.61 E-value=7.6e-15 Score=104.92 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=73.0
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++|++++++||.+... .....++++..+|+.++++++.+..||+|..+..+++++++.|+++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 4689999999999999999999999999653 44445599999999999888888999999999999999999988765
Q ss_pred eEeeehhhhHHH
Q 031610 127 SIFMFQQVMIEM 138 (156)
Q Consensus 127 ~v~~~~~~~~~~ 138 (156)
. ++|....+
T Consensus 162 ~---vgD~~~di 170 (183)
T TIGR01509 162 F---VDDSPAGI 170 (183)
T ss_pred E---EcCCHHHH
Confidence 4 44544433
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.61 E-value=4.8e-15 Score=103.64 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=67.8
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
...+||+.++|+.|+++|++++++||+.... +...++.+ +..+|..++++++.. .||+|+++..+++++++.| ++.
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEE
Confidence 3467999999999999999999999999887 68888887 788898888888777 9999999999999999988 654
Q ss_pred e
Q 031610 127 S 127 (156)
Q Consensus 127 ~ 127 (156)
.
T Consensus 139 ~ 139 (154)
T TIGR01549 139 H 139 (154)
T ss_pred E
Confidence 3
No 41
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.59 E-value=7e-15 Score=112.35 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=67.5
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
.+++||+.++|+.|+++|++++|+||+.... +...++.+|+..+|+.+++.++. +++|..+..+++++++.|+++.
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~~l 216 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQPAAVM 216 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcChhHEE
Confidence 4689999999999999999999999999888 79999999999999987765443 3467899999999999998865
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 217 ~IG 219 (273)
T PRK13225 217 YVG 219 (273)
T ss_pred EEC
Confidence 443
No 42
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.59 E-value=6e-15 Score=108.31 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=68.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhH-HHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~-~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
..++|++.++|+.|+++|++++|+||...... ....+..+++..+|+.++++++.+..||+|..+..+++++++.|+++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 45899999999999999999999999865320 12334456788899999988888889999999999999999999987
Q ss_pred eeE
Q 031610 126 CSI 128 (156)
Q Consensus 126 ~~v 128 (156)
..|
T Consensus 173 l~i 175 (211)
T TIGR02247 173 VFL 175 (211)
T ss_pred EEE
Confidence 654
No 43
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.59 E-value=4.2e-15 Score=109.87 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=69.1
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
..++||+.++|+.| +++++|+||++... +...++.+++..+|+ .++++++.+..||+|+++..+++++++.|+++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 46899999999998 49999999999877 699999999999996 56677778889999999999999999999887
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
+.|+
T Consensus 163 l~ig 166 (221)
T PRK10563 163 ILVD 166 (221)
T ss_pred EEEe
Confidence 6544
No 44
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.58 E-value=8.5e-15 Score=105.43 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=72.3
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC----CCCCHHHHHHHHHHhCCCCc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK----DSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~----~kp~p~~~~~~~~~~~~~~~ 123 (156)
+++||+.++|+.|+ ++++++||++... +...++.+|+..+|+.++++++.+. .||+|+++..+++++++.|+
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 47899999999997 4799999999887 7999999999999999998887776 59999999999999999998
Q ss_pred CceeEeeehhhhHHHhhc
Q 031610 124 RSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 124 ~~~~v~~~~~~~~~~~~~ 141 (156)
++. |++|....+-.+
T Consensus 160 ~~l---~vgD~~~di~aA 174 (184)
T TIGR01993 160 RAI---FFDDSARNIAAA 174 (184)
T ss_pred ceE---EEeCCHHHHHHH
Confidence 875 344444433333
No 45
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.57 E-value=6.9e-15 Score=107.30 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=75.3
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
.++||+.++|+.|+++|++++|+||++... ....+.. .++..+|+.++++++.+..||+|+++..+++++++.|+++.
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 478999999999999999999999998665 4555444 47788899999999999999999999999999999999975
Q ss_pred eEeeehhhhHHHhhcccc
Q 031610 127 SIFMFQQVMIEMFQNRHS 144 (156)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~ 144 (156)
. ++|....+-.++..
T Consensus 163 ~---vgD~~~di~aA~~a 177 (199)
T PRK09456 163 F---FDDNADNIEAANAL 177 (199)
T ss_pred E---eCCCHHHHHHHHHc
Confidence 4 44554444444333
No 46
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.57 E-value=1.4e-14 Score=110.30 Aligned_cols=84 Identities=24% Similarity=0.244 Sum_probs=71.6
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~ 96 (156)
.-..+++|+|||||||++ ++. ..++. |++.++|+.|+++|++++|+|++.+.. +...++.+|+..+|+.++
T Consensus 122 ~~~~~kvIvFDLDgTLi~------~~~-~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YFdvII 193 (301)
T TIGR01684 122 VFEPPHVVVFDLDSTLIT------DEE-PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYFDIII 193 (301)
T ss_pred ccccceEEEEecCCCCcC------CCC-ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCcccCEEE
Confidence 334578999999999997 322 23355 999999999999999999999999888 799999999999999999
Q ss_pred EecccCCCCCCHH
Q 031610 97 VIYMYTKDSSNAS 109 (156)
Q Consensus 97 ~~~~~~~~kp~p~ 109 (156)
++++....||.|+
T Consensus 194 s~Gdv~~~kp~~e 206 (301)
T TIGR01684 194 SGGHKAEEYSTMS 206 (301)
T ss_pred ECCccccCCCCcc
Confidence 8888888888775
No 47
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.56 E-value=2.2e-14 Score=116.89 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=66.4
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
.+++||+.++|+.|+++|++++|+||++... +...++.+++..+|+.++++++.. .||+|.++..++++++ |++++
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~v 404 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWVTETFSIEQIN-SLNKSDLVKSILNKYD--IKEAA 404 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhcceeEecCCCC-CCCCcHHHHHHHHhcC--cceEE
Confidence 4689999999999999999999999999988 799999999999999998887664 4688889999998864 55554
Q ss_pred e
Q 031610 127 S 127 (156)
Q Consensus 127 ~ 127 (156)
+
T Consensus 405 ~ 405 (459)
T PRK06698 405 V 405 (459)
T ss_pred E
Confidence 3
No 48
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.55 E-value=3.3e-14 Score=110.90 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred CCceEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH----cCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~----l~l~~~f~~ 94 (156)
.+|+|++|+|+|||.+-+... ..-....+++++.++|+.|+++|++++|||+++... +...++. +++..+|+.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f~~ 80 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDFDA 80 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHeeE
Confidence 469999999999998643311 111223478999999999999999999999999887 7999999 888888988
Q ss_pred EEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcccccc
Q 031610 95 MVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSML 146 (156)
Q Consensus 95 ~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (156)
+.+. .||+|..+..+++++++.+.++ +|++|+..++...+...+
T Consensus 81 ~~~~-----~~pk~~~i~~~~~~l~i~~~~~---vfidD~~~d~~~~~~~lp 124 (320)
T TIGR01686 81 RSIN-----WGPKSESLRKIAKKLNLGTDSF---LFIDDNPAERANVKITLP 124 (320)
T ss_pred EEEe-----cCchHHHHHHHHHHhCCCcCcE---EEECCCHHHHHHHHHHCC
Confidence 7654 5899999999999999998874 467777766666555443
No 49
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.55 E-value=6.1e-14 Score=99.69 Aligned_cols=110 Identities=35% Similarity=0.551 Sum_probs=74.4
Q ss_pred CCceEEEecCCcccccccccc----------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~----------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
-+|+|+||||+|||+.|+.++ ..++...++|++.++|+.|+++|+++++||....+..++..|+
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 468999999999999988865 4677788999999999999999999999996554445899999
Q ss_pred HcCCC----------CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHH
Q 031610 85 KLGIH----------SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEM 138 (156)
Q Consensus 85 ~l~l~----------~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (156)
.+++. .+|++..++. .++..-+..+.+..|++.++ ++||||+....
T Consensus 82 ~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~i~~~tgI~y~e---MlFFDDe~~N~ 137 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRRIHRKTGIPYEE---MLFFDDESRNI 137 (169)
T ss_dssp HTT-C----------CCECEEEESS-----S-HHHHHHHHHHHH---GGG---EEEEES-HHHH
T ss_pred hcCCCccccccccchhhcchhheec-----CchHHHHHHHHHhcCCChhH---EEEecCchhcc
Confidence 99999 7887765543 35777899999999998887 45677765533
No 50
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.54 E-value=2e-14 Score=107.77 Aligned_cols=76 Identities=8% Similarity=-0.016 Sum_probs=66.4
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
..++||+.++|+.|+++ ++++++||++.. ++..|+..+|+.++++++.+..||+|.++..+++++++.|++++
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 45779999999999875 999999998743 26789999999999988888999999999999999999999876
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 185 ~VG 187 (238)
T PRK10748 185 HVG 187 (238)
T ss_pred EEc
Confidence 544
No 51
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.54 E-value=2.2e-14 Score=100.86 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=77.4
Q ss_pred CceEEEecCCccccccccccccCCCcc---cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPY---LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI 98 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~---l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~ 98 (156)
+|+||||+||||+++.......++... +.++ .+|++|+++|++++|+||++... +...++.+|+..+|..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~~~---- 73 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLYQG---- 73 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEEec----
Confidence 588999999999985332222221111 2233 38999999999999999999888 7999999998877642
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610 99 YMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (156)
.+|+|+.+..+++.+++.++++.+++ -+.+.+.+.
T Consensus 74 -----~~~k~~~~~~~~~~~~~~~~~~~~vG-Ds~~D~~~~ 108 (154)
T TIGR01670 74 -----QSNKLIAFSDILEKLALAPENVAYIG-DDLIDWPVM 108 (154)
T ss_pred -----ccchHHHHHHHHHHcCCCHHHEEEEC-CCHHHHHHH
Confidence 37899999999999999998876544 233344444
No 52
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=5.2e-14 Score=124.06 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=73.6
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~-~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
++||+.++|+.|+++|++++|+||..... +...++++++. .+|+.++++++....||+|+++..+++++++.|+++++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 68999999999999999999999999888 68999999996 78999999999999999999999999999999998765
Q ss_pred Ee
Q 031610 128 IF 129 (156)
Q Consensus 128 v~ 129 (156)
|.
T Consensus 241 Ig 242 (1057)
T PLN02919 241 IE 242 (1057)
T ss_pred Ec
Confidence 43
No 53
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.53 E-value=9.7e-14 Score=97.00 Aligned_cols=121 Identities=11% Similarity=-0.069 Sum_probs=88.7
Q ss_pred ceEEEecCCccccccccccc----c-------------CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 23 RLVVFDLDYTLWPFYCECCY----E-------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~----~-------------~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
+.+++||||||+........ . .....++||+.++|++|+ ++++++|+|+++... ++..++.
T Consensus 3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~~ 80 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLDL 80 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHHH
Confidence 57999999999986321100 0 112257999999999998 579999999999988 7999999
Q ss_pred cCCCC-CCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh---ccccccccccc
Q 031610 86 LGIHS-MFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ---NRHSMLDLNSS 151 (156)
Q Consensus 86 l~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~ 151 (156)
+++.. +|+.+++.++....||. +..++++++..|+++.. ++|....+-. |......+.++
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i~---i~Ds~~~~~aa~~ngI~i~~f~~~ 144 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVII---IDDSPDSWPFHPENLIPIKPWFGD 144 (148)
T ss_pred hCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEEE---EECCHHHhhcCccCEEEecCcCCC
Confidence 99865 45788888888888887 88899999999998753 4444333333 33333444443
No 54
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.53 E-value=5.4e-14 Score=100.28 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=85.4
Q ss_pred CCceEEEecCCccccccccccccCCCc-ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY 99 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~-~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~ 99 (156)
.+|+++||+||||.|+-..+...++.. ...-.-..+++.|+++|++++|+||++... +...++.+++..+|..
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f~~----- 79 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFHEG----- 79 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEEec-----
Confidence 479999999999999755554555433 333334458999999999999999999888 7999999999877753
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610 100 MYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ 140 (156)
Q Consensus 100 ~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 140 (156)
.||+|..+..+++++++.++++..++ -+.+.+.|+.
T Consensus 80 ----~kpkp~~~~~~~~~l~~~~~ev~~iG-D~~nDi~~~~ 115 (169)
T TIGR02726 80 ----IKKKTEPYAQMLEEMNISDAEVCYVG-DDLVDLSMMK 115 (169)
T ss_pred ----CCCCHHHHHHHHHHcCcCHHHEEEEC-CCHHHHHHHH
Confidence 27999999999999999999876555 3345555553
No 55
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.52 E-value=7.5e-14 Score=101.33 Aligned_cols=81 Identities=19% Similarity=0.088 Sum_probs=63.7
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCC----------CHHHHHHHHHH
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSS----------NASSSESTCAI 117 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp----------~p~~~~~~~~~ 117 (156)
+++||+.++|+.|+++|++++|+||+.... +...++.+|+..+|...+..++.+..+| ++..+..++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 589999999999999999999999999887 7999999999887766555443333233 33578888899
Q ss_pred hCCCCcCceeEe
Q 031610 118 FHFHPKRSCSIF 129 (156)
Q Consensus 118 ~~~~~~~~~~v~ 129 (156)
+++.++++.+|+
T Consensus 159 ~~~~~~~~i~iG 170 (201)
T TIGR01491 159 LNPSLTETVAVG 170 (201)
T ss_pred hCCCHHHEEEEc
Confidence 999888765443
No 56
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.51 E-value=1.3e-13 Score=106.12 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=66.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce--EEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP--MVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~--~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
.++||+.++|+.|+++|++++|+||.+... +...++.+....++.. ++++++....||+|+++..+++++++.|+++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 578999999999999999999999999877 6788877643334432 2366677789999999999999999999887
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
++|+
T Consensus 223 l~IG 226 (286)
T PLN02779 223 VVVE 226 (286)
T ss_pred EEEe
Confidence 6554
No 57
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.50 E-value=2e-13 Score=92.14 Aligned_cols=106 Identities=27% Similarity=0.338 Sum_probs=82.0
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK 103 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~ 103 (156)
+++||+||||++....... .....++|++.++|+.|+++|++++++||+.... +...++.+++..++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYFDPVITSNGAAI 78 (139)
T ss_pred CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhhhheeccchhhh
Confidence 4799999999984211110 1234789999999999999999999999999888 7999999999878877776554433
Q ss_pred C----------------CCCHHHHHHHHHHhCCCCcCceeEeeehhh
Q 031610 104 D----------------SSNASSSESTCAIFHFHPKRSCSIFMFQQV 134 (156)
Q Consensus 104 ~----------------kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~ 134 (156)
. ||++..+..+.+.++..+.+. ++++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~igD~ 122 (139)
T cd01427 79 YYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEV---LMVGDS 122 (139)
T ss_pred hcccccccccccccccCCCCHHHHHHHHHHcCCChhhE---EEeCCC
Confidence 3 999999999999998876553 445444
No 58
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.50 E-value=1e-14 Score=104.00 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
.++||+.++|+ +++|+||.+... +...++++++..+|+.++++++.+..||+|+.|..+++++|+.|++++.
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 47888888888 378999999887 6889999999999999888888888999999999999999999998765
Q ss_pred Ee
Q 031610 128 IF 129 (156)
Q Consensus 128 v~ 129 (156)
|+
T Consensus 162 vg 163 (175)
T TIGR01493 162 VA 163 (175)
T ss_pred Ee
Confidence 44
No 59
>COG4996 Predicted phosphatase [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=92.73 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=85.2
Q ss_pred ceEEEecCCcccccccc---------------ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 23 RLVVFDLDYTLWPFYCE---------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~---------------~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
++|+||.||||||+-.- .++.+....++|.+++++++++++|+.+..+|.+.... +.+.++.++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~ 79 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD 79 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence 36899999999996322 13667778899999999999999999999999998776 899999999
Q ss_pred CCCCCceEEEecccCCCCCCHH---HHHHHHHHhCCCCc---CceeEeeehhhhHHHhh
Q 031610 88 IHSMFVPMVVIYMYTKDSSNAS---SSESTCAIFHFHPK---RSCSIFMFQQVMIEMFQ 140 (156)
Q Consensus 88 l~~~f~~~~~~~~~~~~kp~p~---~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 140 (156)
+..+|+++++ +|.|. ++.++++.++.... .+..|+|++|..+++.+
T Consensus 80 ~~~yFhy~Vi-------ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~ 131 (164)
T COG4996 80 LLQYFHYIVI-------EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGN 131 (164)
T ss_pred hhhhEEEEEe-------cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHH
Confidence 9999999886 67766 45555555553221 13347788888776654
No 60
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.50 E-value=2.2e-13 Score=100.42 Aligned_cols=121 Identities=23% Similarity=0.149 Sum_probs=87.8
Q ss_pred cCCCCCceEEEecCCcccccccccc---------------------------------------------ccCCCcccCC
Q 031610 17 QFENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYP 51 (156)
Q Consensus 17 ~~~~~~k~i~fDlDGTL~~~~~~~~---------------------------------------------~~~~~~~l~~ 51 (156)
...+++++++||+||||+++..... ...+..+++|
T Consensus 9 ~~~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
T TIGR00338 9 PLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTE 88 (219)
T ss_pred hhhccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCC
Confidence 3466789999999999998532100 1112235899
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe-------c---ccCCCCCCHHHHHHHHHHhCCC
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI-------Y---MYTKDSSNASSSESTCAIFHFH 121 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~-------~---~~~~~kp~p~~~~~~~~~~~~~ 121 (156)
|+.++|+.|+++|++++|+||+.... +...++.+++..+|...+.. . .....+|+|..+..++++++++
T Consensus 89 g~~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 167 (219)
T TIGR00338 89 GAEELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGIS 167 (219)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCC
Confidence 99999999999999999999998777 79999999998887542211 1 1223467899999999999999
Q ss_pred CcCceeEeeehhhhHHHh
Q 031610 122 PKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 122 ~~~~~~v~~~~~~~~~~~ 139 (156)
++++..|+ -+..++.+.
T Consensus 168 ~~~~i~iG-Ds~~Di~aa 184 (219)
T TIGR00338 168 PENTVAVG-DGANDLSMI 184 (219)
T ss_pred HHHEEEEE-CCHHHHHHH
Confidence 98876544 223344444
No 61
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.46 E-value=5.6e-13 Score=101.63 Aligned_cols=73 Identities=25% Similarity=0.298 Sum_probs=61.7
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
...+++|+|||||||++ ++. ..++. |++.++|+.|+++|++++|+||++... +...++.+|+..+|+.+++
T Consensus 125 ~~~~~~i~~D~D~TL~~------~~~-~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yFDvII~ 196 (303)
T PHA03398 125 WEIPHVIVFDLDSTLIT------DEE-PVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYFDIIIC 196 (303)
T ss_pred eeeccEEEEecCCCccC------CCC-ccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccccEEEE
Confidence 34678999999999997 333 22344 999999999999999999999998888 7999999999999987776
Q ss_pred ec
Q 031610 98 IY 99 (156)
Q Consensus 98 ~~ 99 (156)
++
T Consensus 197 ~g 198 (303)
T PHA03398 197 GG 198 (303)
T ss_pred CC
Confidence 54
No 62
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.44 E-value=1.1e-12 Score=107.75 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCCCceEEEecCCcccccccc--cccc-CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC------------hhHHHHHH
Q 031610 19 ENLPRLVVFDLDYTLWPFYCE--CCYE-DEIPYLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFL 83 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~--~~~~-~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~------------~~~~~~~l 83 (156)
....|+++||+||||+..... ...+ .+...++|++.++|+.|+++|++++|+||++. .. +..++
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL 243 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIV 243 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHH
Confidence 345699999999999963110 0001 11113689999999999999999999999886 23 57788
Q ss_pred HHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC----CCCcCceeEe
Q 031610 84 HKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH----FHPKRSCSIF 129 (156)
Q Consensus 84 ~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~----~~~~~~~~v~ 129 (156)
+.+|+. |+.+++.+.....||+|.++..+++.++ ++++++.+|+
T Consensus 244 ~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VG 291 (526)
T TIGR01663 244 AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVG 291 (526)
T ss_pred HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeC
Confidence 888874 7777777777788999999999999985 7778776655
No 63
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.43 E-value=1.1e-12 Score=93.67 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC-ChhHHHHHHHHcCCCCCCceEEEe
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVVI 98 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~-~~~~~~~~l~~l~l~~~f~~~~~~ 98 (156)
..++++++|+||||+.. . ...++|++.++|+.|+++|++++++||++ ... +..+++.+++..++
T Consensus 23 ~~v~~vv~D~Dgtl~~~------~--~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~~~------ 87 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP------D--HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPVLP------ 87 (170)
T ss_pred CCCCEEEEecCCccccC------C--CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEEEc------
Confidence 46799999999999962 2 23689999999999999999999999998 454 56666777764321
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610 99 YMYTKDSSNASSSESTCAIFHFHPKRSCSI 128 (156)
Q Consensus 99 ~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v 128 (156)
...||+|.++..+++++++.++++.+|
T Consensus 88 ---~~~KP~p~~~~~~l~~~~~~~~~~l~I 114 (170)
T TIGR01668 88 ---HAVKPPGCAFRRAHPEMGLTSEQVAVV 114 (170)
T ss_pred ---CCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence 236999999999999999998886543
No 64
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.42 E-value=1.9e-12 Score=96.94 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=79.5
Q ss_pred eEEEecCCcccccccc--c-----c------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC----C
Q 031610 24 LVVFDLDYTLWPFYCE--C-----C------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS----P 74 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~--~-----~------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~----~ 74 (156)
+|+|||||||+|.... . . .......+.+++.++|+.++++|++++++||+ .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 8999999999985331 0 0 00112245566999999999999999999999 4
Q ss_pred ChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610 75 APDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 75 ~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (156)
... +..+++.+|+..+|+.++++++....||++.. +++.+++ ++|++|....+..++...
T Consensus 145 ~~~-a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~---~l~~~~i-------~i~vGDs~~DI~aAk~AG 204 (237)
T TIGR01672 145 DTV-SKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQ---WIQDKNI-------RIHYGDSDNDITAAKEAG 204 (237)
T ss_pred HHH-HHHHHHHhCCchheeEEECCCCCCCCCCCHHH---HHHhCCC-------eEEEeCCHHHHHHHHHCC
Confidence 445 68888899999999888887776667777652 4455554 356777766665555544
No 65
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.41 E-value=2.6e-12 Score=101.11 Aligned_cols=106 Identities=14% Similarity=0.046 Sum_probs=80.1
Q ss_pred CCceEEEecCCcccccccc--ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---------------ChhHHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFL 83 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~--~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---------------~~~~~~~~l 83 (156)
+.|+++||.||||+..... .....+...++||+.++|+.|+++|++++|+||++ ... +...+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL 79 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIF 79 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHH
Confidence 3578999999999974211 11233345799999999999999999999999962 223 46677
Q ss_pred HHcCCCCCCceEEEe-----cccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 84 HKLGIHSMFVPMVVI-----YMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 84 ~~l~l~~~f~~~~~~-----~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
+.+++. |+.++++ ++....||+|.++..+++.+++.|+++++|+
T Consensus 80 ~~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIG 128 (354)
T PRK05446 80 ESQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIG 128 (354)
T ss_pred HHcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEc
Confidence 788873 6555432 4566789999999999999999998876554
No 66
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.41 E-value=7.5e-13 Score=98.39 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=76.5
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
...+.+++.++++.||++|.+++++||-.... +..+..+++..+|++++.++..+..||+|.+|+.+++.+++.|++|
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~--~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRL--RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHHH--HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 45677888999999999999999999999764 7888999999999999999999999999999999999999999998
Q ss_pred eeEeeehhhhHH
Q 031610 126 CSIFMFQQVMIE 137 (156)
Q Consensus 126 ~~v~~~~~~~~~ 137 (156)
.. .+|....
T Consensus 189 vh---IgD~l~n 197 (237)
T KOG3085|consen 189 VH---IGDLLEN 197 (237)
T ss_pred EE---ecCcccc
Confidence 65 4455443
No 67
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.40 E-value=9.7e-13 Score=100.24 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=55.7
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
|+|++++||||||++ +++ .+.+.++++|++|+++|+++++||||+... +...++.+++..++.
T Consensus 1 m~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I 63 (272)
T PRK15126 1 MARLAAFDMDGTLLM------PDH---HLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAYLI 63 (272)
T ss_pred CccEEEEeCCCcCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCcEE
Confidence 579999999999998 444 588999999999999999999999999988 799999999876643
No 68
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.40 E-value=4.4e-12 Score=97.87 Aligned_cols=119 Identities=14% Similarity=0.005 Sum_probs=89.2
Q ss_pred CCCceEEEecCCcccccccc---ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCceE
Q 031610 20 NLPRLVVFDLDYTLWPFYCE---CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM 95 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~---~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~ 95 (156)
...+++++|+||||.+.... .+.......++|++.++|+.|+++|++++++||++... ....++.+++.+ +|+.+
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f~~i 234 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWFDDL 234 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCchhhh
Confidence 34688999999999973110 00011123689999999999999999999999999888 799999999997 88888
Q ss_pred EEec-------ccCCCCCCHHHHHHHHHHhCCC-CcCceeEeeehhhhHHHhhcc
Q 031610 96 VVIY-------MYTKDSSNASSSESTCAIFHFH-PKRSCSIFMFQQVMIEMFQNR 142 (156)
Q Consensus 96 ~~~~-------~~~~~kp~p~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~ 142 (156)
++.+ +....||+|.++..++++++.. ++++. |++|....+...+
T Consensus 235 ~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~---~vgD~~~d~~~a~ 286 (300)
T PHA02530 235 IGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLL---AVDDRDQVVDMWR 286 (300)
T ss_pred hCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEE---EEcCcHHHHHHHH
Confidence 7766 3556799999999999998773 45553 4555544444333
No 69
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.40 E-value=1.2e-12 Score=94.46 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccC-CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~-~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
.+.+|+|++|+||||++........+.....+ ..-..+++.|+++|++++|+||++... +..+++.+++..+|..
T Consensus 18 ~~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f~g--- 93 (183)
T PRK09484 18 AENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLYQG--- 93 (183)
T ss_pred hhCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceeecC---
Confidence 44689999999999998522111222111111 111258899999999999999999887 7999999998877641
Q ss_pred ecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610 98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (156)
.++++..+..+++++++.++++.+|+ -+.+++.+.
T Consensus 94 ------~~~k~~~l~~~~~~~gl~~~ev~~VG-Ds~~D~~~a 128 (183)
T PRK09484 94 ------QSNKLIAFSDLLEKLAIAPEQVAYIG-DDLIDWPVM 128 (183)
T ss_pred ------CCcHHHHHHHHHHHhCCCHHHEEEEC-CCHHHHHHH
Confidence 35678999999999999999876544 233344444
No 70
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.38 E-value=3.1e-12 Score=92.99 Aligned_cols=88 Identities=9% Similarity=0.126 Sum_probs=62.6
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC----CceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM----FVPMVVIYMYTKDSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~----f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~ 122 (156)
..++||+.++|+.|+++ ++++++||.+... ....++.+++..+ |+.++++++ .||+|+++..++++++ |
T Consensus 73 ~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~--~ 145 (197)
T PHA02597 73 LSAYDDALDVINKLKED-YDFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG--D 145 (197)
T ss_pred ccCCCCHHHHHHHHHhc-CCEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--C
Confidence 45899999999999987 4678888877555 3556677777654 445555544 3678999999999999 5
Q ss_pred cCceeEeeehhhhHHHhhcccc
Q 031610 123 KRSCSIFMFQQVMIEMFQNRHS 144 (156)
Q Consensus 123 ~~~~~v~~~~~~~~~~~~~~~~ 144 (156)
++ ++|++|....+..++..
T Consensus 146 ~~---~v~vgDs~~di~aA~~a 164 (197)
T PHA02597 146 RV---VCFVDDLAHNLDAAHEA 164 (197)
T ss_pred Cc---EEEeCCCHHHHHHHHHH
Confidence 44 34666776665555444
No 71
>PRK10976 putative hydrolase; Provisional
Probab=99.37 E-value=2.5e-12 Score=97.60 Aligned_cols=63 Identities=32% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
|+|+|++||||||++ +++ .+.+.+.++|++|+++|+++++||||+... +...++.++++.++.
T Consensus 1 mikli~~DlDGTLl~------~~~---~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I 63 (266)
T PRK10976 1 MYQVVASDLDGTLLS------PDH---TLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSYMI 63 (266)
T ss_pred CceEEEEeCCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCeEE
Confidence 478999999999998 444 578899999999999999999999999988 688999999876543
No 72
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.37 E-value=2.5e-12 Score=96.60 Aligned_cols=94 Identities=18% Similarity=0.082 Sum_probs=71.3
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH--HHHHHcCCCC-CCceE
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPM 95 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~--~~l~~l~l~~-~f~~~ 95 (156)
.+.++.++||+||||++. . .++||+.++|++|+++|++++++||+++.. .. ..++.+|+.. +|+.+
T Consensus 5 ~~~~~~~~~D~dG~l~~~-------~---~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~~~I 73 (242)
T TIGR01459 5 INDYDVFLLDLWGVIIDG-------N---HTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLPEMI 73 (242)
T ss_pred hhcCCEEEEecccccccC-------C---ccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCccccceE
Confidence 456889999999999972 2 589999999999999999999999988765 34 6789999987 88888
Q ss_pred EEecccCCCCCCHHHHHHHHHHhCCCCcCceeE
Q 031610 96 VVIYMYTKDSSNASSSESTCAIFHFHPKRSCSI 128 (156)
Q Consensus 96 ~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v 128 (156)
+++.+... ..+..++++++..+++++.+
T Consensus 74 i~s~~~~~-----~~l~~~~~~~~~~~~~~~~v 101 (242)
T TIGR01459 74 ISSGEIAV-----QMILESKKRFDIRNGIIYLL 101 (242)
T ss_pred EccHHHHH-----HHHHhhhhhccCCCceEEEe
Confidence 87653221 34555555666666555443
No 73
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.34 E-value=2.8e-12 Score=97.37 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=55.0
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+|+|++||||||++ +.+ .+.|.+.++|++|+++|+++++||||+... +...++.+++..++.+
T Consensus 3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~ 65 (272)
T PRK10530 3 YRVIALDLDGTLLT------PKK---TILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDTPAIC 65 (272)
T ss_pred ccEEEEeCCCceEC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCCEEE
Confidence 79999999999998 444 578899999999999999999999999988 6889999998765443
No 74
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.34 E-value=4.1e-12 Score=96.52 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=53.0
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+|+|++||||||++ +++ .+.+.+.++|++|+++|+++++||||+... +...++.+++..
T Consensus 3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~ 61 (270)
T PRK10513 3 IKLIAIDMDGTLLL------PDH---TISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHMEQ 61 (270)
T ss_pred eEEEEEecCCcCcC------CCC---ccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCCC
Confidence 79999999999998 443 578999999999999999999999999988 689999999864
No 75
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.33 E-value=9.5e-12 Score=87.00 Aligned_cols=94 Identities=23% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
....++.|++|+|+||+.- .. ....|.+++.+..++++|+++.|+||....- +....+.+|++.+.-
T Consensus 24 ~~~Gikgvi~DlDNTLv~w-----d~---~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~fi~~---- 90 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPW-----DN---PDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPFIYR---- 90 (175)
T ss_pred HHcCCcEEEEeccCceecc-----cC---CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCceeec----
Confidence 3457899999999999962 22 2577999999999999999999999998877 688888888764432
Q ss_pred ecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 98 IYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 98 ~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
..||.+..+..++++++++++++.+|+
T Consensus 91 -----A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 91 -----AKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred -----ccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 269999999999999999999998776
No 76
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.33 E-value=2.7e-12 Score=88.78 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHH--HHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKG--ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~--~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~ 96 (156)
..++|.+++|+||||.|+...+.++++..+.|- +++ .|+.|.+.|++++|+|+|..+- ++++.+.||+...|.++
T Consensus 5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFn-v~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~qG~- 81 (170)
T COG1778 5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFN-VRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLYQGI- 81 (170)
T ss_pred hhhceEEEEeccceeecCeEEEcCCCceeeeee-ccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceeeech-
Confidence 356899999999999998777767777665554 555 7899999999999999999887 79999999998887654
Q ss_pred EecccCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 97 VIYMYTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 97 ~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
+.+...+..+++++++.++++..++
T Consensus 82 --------~dK~~a~~~L~~~~~l~~e~~ayiG 106 (170)
T COG1778 82 --------SDKLAAFEELLKKLNLDPEEVAYVG 106 (170)
T ss_pred --------HhHHHHHHHHHHHhCCCHHHhhhhc
Confidence 5577899999999999999976543
No 77
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.32 E-value=3.8e-12 Score=94.45 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=55.2
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
++|+|++|+||||++ ++. .+.|.+.++|++|+++|+++++||||+... +...++.+++..++..
T Consensus 2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~i~ 65 (230)
T PRK01158 2 KIKAIAIDIDGTITD------KDR---RLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGPVIA 65 (230)
T ss_pred ceeEEEEecCCCcCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCcEEE
Confidence 369999999999997 343 477899999999999999999999999988 6888899998766543
No 78
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.31 E-value=4.7e-12 Score=96.68 Aligned_cols=64 Identities=38% Similarity=0.498 Sum_probs=56.0
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
|+|+|++||||||++ ++. .+++.++++|++|+++|+++++||||+... +...++.+++..++.+
T Consensus 3 ~~kli~~DlDGTLl~------~~~---~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~i~ 66 (273)
T PRK00192 3 MKLLVFTDLDGTLLD------HHT---YSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPFIV 66 (273)
T ss_pred cceEEEEcCcccCcC------CCC---cCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCEEE
Confidence 589999999999998 333 466889999999999999999999999888 7999999998876655
No 79
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.31 E-value=1.4e-11 Score=96.16 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=71.6
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce-------EEEec---ccCCCCCCHHHHHHHHH
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-------MVVIY---MYTKDSSNASSSESTCA 116 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~-------~~~~~---~~~~~kp~p~~~~~~~~ 116 (156)
.+++||+.++|+.|++.|++++|+|++.... +..+.+.++++..+.. .+++. +....+|+++.+..+++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 4689999999999999999999999999777 6888889998765431 11111 22346899999999999
Q ss_pred HhCCCCcCceeEeeehhhhHHHhh
Q 031610 117 IFHFHPKRSCSIFMFQQVMIEMFQ 140 (156)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~ 140 (156)
++|++++++.+++ -+.+++.|..
T Consensus 259 ~lgi~~~qtIaVG-Dg~NDl~m~~ 281 (322)
T PRK11133 259 EYEIPLAQTVAIG-DGANDLPMIK 281 (322)
T ss_pred HcCCChhhEEEEE-CCHHHHHHHH
Confidence 9999999987665 4446666663
No 80
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.29 E-value=6.9e-12 Score=92.44 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=54.9
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+|+|++||||||++ +++ .+.|.+.++|++|+++|+++++||||+... +...++.+++..++..
T Consensus 1 ik~v~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~~i~ 63 (215)
T TIGR01487 1 IKLVAIDIDGTLTE------PNR---MISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGPVVA 63 (215)
T ss_pred CcEEEEecCCCcCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCcEEE
Confidence 47899999999997 444 588999999999999999999999999988 6999999998765543
No 81
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=90.78 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=67.7
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC-CCCCCceEEE--ecccCCCCCCHHHHHHHHHHhCCCC
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMFVPMVV--IYMYTKDSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~-l~~~f~~~~~--~~~~~~~kp~p~~~~~~~~~~~~~~ 122 (156)
...+.||+.++++.|+..|++++++|++.+.. ....++.++ +...|...++ ..+..+.||+|++|..+++.++..|
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 34688999999999999999999999998877 677777776 7777877776 4578888999999999999999998
Q ss_pred -cCce
Q 031610 123 -KRSC 126 (156)
Q Consensus 123 -~~~~ 126 (156)
+.|+
T Consensus 169 ~~k~l 173 (222)
T KOG2914|consen 169 PSKCL 173 (222)
T ss_pred ccceE
Confidence 5543
No 82
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.27 E-value=6.9e-11 Score=84.67 Aligned_cols=109 Identities=12% Similarity=-0.004 Sum_probs=78.0
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--------------HHHHHHHHc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL 86 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--------------~~~~~l~~l 86 (156)
..|++|+|.||||..-.......-+...+.|++++++..|.+.|++++++||.+.-. .....++..
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~ 83 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ 83 (181)
T ss_pred CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence 368999999999975211011222334688999999999999999999999965211 123444555
Q ss_pred CCCCCCceEEEec-----ccCCCCCCHHHHHHHHHHhCCCCcCceeEeee
Q 031610 87 GIHSMFVPMVVIY-----MYTKDSSNASSSESTCAIFHFHPKRSCSIFMF 131 (156)
Q Consensus 87 ~l~~~f~~~~~~~-----~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~ 131 (156)
|. -|+.++... .+...||+|.++..+++++++++..+.+|+--
T Consensus 84 gv--~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 84 GV--KIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CC--ccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCc
Confidence 54 466655321 36779999999999999999999998876643
No 83
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=93.82 Aligned_cols=64 Identities=34% Similarity=0.605 Sum_probs=57.3
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
++|+|++||||||++ +++ .+.+.+.++|++++++|++++++|||+... +...++.+++..++..
T Consensus 2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~~~I~ 65 (264)
T COG0561 2 MIKLLAFDLDGTLLD------SNK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDGPLIT 65 (264)
T ss_pred CeeEEEEcCCCCccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCccEEE
Confidence 579999999999998 454 488999999999999999999999999988 7999999999985544
No 84
>PLN02954 phosphoserine phosphatase
Probab=99.26 E-value=4.5e-11 Score=88.40 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=55.9
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC--CCCceEEE--------ecc----cCCCCCCHHHHH
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVV--------IYM----YTKDSSNASSSE 112 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~--~~f~~~~~--------~~~----~~~~kp~p~~~~ 112 (156)
..++||+.++|+.|+++|++++|+|++.... +...++.+|+. .+|...+. +.+ ....+++|..+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 3589999999999999999999999999888 79999999987 34532111 111 123467888999
Q ss_pred HHHHHhCC
Q 031610 113 STCAIFHF 120 (156)
Q Consensus 113 ~~~~~~~~ 120 (156)
.+++.++.
T Consensus 162 ~~~~~~~~ 169 (224)
T PLN02954 162 HIKKKHGY 169 (224)
T ss_pred HHHHHcCC
Confidence 99888774
No 85
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.26 E-value=3.3e-11 Score=85.22 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=67.2
Q ss_pred ceEEEecCCcccccccccc--ccCCCcc-cCCcHHHHHHHHHHCCCeEEEEcCCCCh-------h------HHHHHHHHc
Q 031610 23 RLVVFDLDYTLWPFYCECC--YEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAP-------D------IAKTFLHKL 86 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~--~~~~~~~-l~~~~~~~L~~L~~~G~~v~i~T~~~~~-------~------~~~~~l~~l 86 (156)
|+++||+||||....-... .+..-.. +.|++.++|+.|.+.|++++|+||...- . -+..+++.+
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 6799999999987422110 1112223 4568999999999999999999987422 1 124445556
Q ss_pred CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC----CCcCceeEe
Q 031610 87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF----HPKRSCSIF 129 (156)
Q Consensus 87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~----~~~~~~~v~ 129 (156)
++. +....+.......||.+.++..+++.++. +.+++.+|+
T Consensus 81 ~ip--~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VG 125 (159)
T PF08645_consen 81 GIP--IQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVG 125 (159)
T ss_dssp TS---EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEE
T ss_pred CCc--eEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEe
Confidence 554 33333334457899999999999999875 677777666
No 86
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.23 E-value=9.1e-11 Score=87.06 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=70.7
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
..++|++.++|+.|+++|++++|+||++... ....++.. ++..+|+..+.. .. ..||+|++|..+++++++.|+
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f~~~fd~-~~-g~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYFSGYFDT-TV-GLKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhcceEEEe-Cc-ccCCCHHHHHHHHHHhCcChh
Confidence 3699999999999999999999999999776 46666665 566667665432 22 269999999999999999998
Q ss_pred CceeEeeehhhhHHHhhccccc
Q 031610 124 RSCSIFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 124 ~~~~v~~~~~~~~~~~~~~~~~ 145 (156)
++. |++|....+-.++...
T Consensus 171 e~l---fVgDs~~Di~AA~~AG 189 (220)
T TIGR01691 171 EIL---FLSDIINELDAARKAG 189 (220)
T ss_pred HEE---EEeCCHHHHHHHHHcC
Confidence 864 4556655555444443
No 87
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.23 E-value=2.4e-11 Score=92.66 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=53.0
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
+.+++|++||||||++ +.. .+.+.+.++|++|+++|+++++||||+... +...++.++++
T Consensus 5 ~~~~lI~~DlDGTLL~------~~~---~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLD------SHT---YDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcC------CCC---cCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCC
Confidence 5679999999999997 433 466789999999999999999999999988 79999999985
No 88
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.21 E-value=5.6e-11 Score=87.94 Aligned_cols=81 Identities=14% Similarity=-0.015 Sum_probs=59.6
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CC--ceEEEecccCCCCCCHHH----------H
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MF--VPMVVIYMYTKDSSNASS----------S 111 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f--~~~~~~~~~~~~kp~p~~----------~ 111 (156)
...++||+.++|+.|+++|++++|+||+.... +..+++.+ +.. .+ ...+..+.....||.|.. .
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K 149 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCK 149 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCch
Confidence 34699999999999999999999999999887 79999987 643 22 122333445556777654 3
Q ss_pred HHHHHHhCCCCcCceeE
Q 031610 112 ESTCAIFHFHPKRSCSI 128 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~v 128 (156)
..+++.++..+.++.+|
T Consensus 150 ~~~l~~~~~~~~~~i~i 166 (219)
T PRK09552 150 PSLIRKLSDTNDFHIVI 166 (219)
T ss_pred HHHHHHhccCCCCEEEE
Confidence 56888888888765433
No 89
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.21 E-value=3.4e-11 Score=92.03 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=54.6
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
.|+||+||||||+++ +. ..++.+.++|++|+++|+++++||+|+... +..+.+.+++..+|..
T Consensus 1 ~KLIftDLDGTLLd~------~~---~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~I~ 63 (302)
T PRK12702 1 MRLVLSSLDGSLLDL------EF---NSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPFIC 63 (302)
T ss_pred CcEEEEeCCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEE
Confidence 378999999999983 33 366779999999999999999999999998 6999999999876654
No 90
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.20 E-value=4e-11 Score=90.54 Aligned_cols=60 Identities=37% Similarity=0.605 Sum_probs=51.9
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
++++||||||++ ..+ .+.+.+.++|++|+++|+++++||||+... +...++.+++..++.
T Consensus 1 li~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~~~I 60 (256)
T TIGR00099 1 LIFIDLDGTLLN------DDH---TISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDTPFI 60 (256)
T ss_pred CEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCCCEE
Confidence 489999999998 333 577899999999999999999999999888 688999999875543
No 91
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.13 E-value=2.7e-10 Score=84.10 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=71.7
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc----------cCCCCCCHHHHHHHHH
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM----------YTKDSSNASSSESTCA 116 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~----------~~~~kp~p~~~~~~~~ 116 (156)
.+++|++.++++.++++|++++|+|++.... +.++.+.+|++..+......++ .-..+-+...+..+++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 5799999999999999999999999999877 8999999999987765443222 1113446668888999
Q ss_pred HhCCCCcCceeEeeehhhhHHHhhcc
Q 031610 117 IFHFHPKRSCSIFMFQQVMIEMFQNR 142 (156)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~ 142 (156)
++|+.++++.+++ -+.++.-|+...
T Consensus 155 ~~g~~~~~~~a~g-Ds~nDlpml~~a 179 (212)
T COG0560 155 ELGIPLEETVAYG-DSANDLPMLEAA 179 (212)
T ss_pred HcCCCHHHeEEEc-CchhhHHHHHhC
Confidence 9999999887654 344555555443
No 92
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.13 E-value=1.3e-09 Score=81.68 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=74.6
Q ss_pred ceEEEecCCccccc-c---cccc---------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---
Q 031610 23 RLVVFDLDYTLWPF-Y---CECC---------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--- 74 (156)
Q Consensus 23 k~i~fDlDGTL~~~-~---~~~~---------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~--- 74 (156)
-+|+||+|||+++. . .... .......++||+.++|+.|+++|++++++|||.
T Consensus 64 ~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k 143 (237)
T PRK11009 64 MAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATK 143 (237)
T ss_pred cEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 38999999999972 1 1000 012234588899999999999999999999985
Q ss_pred -ChhHHHHHHHHcCC--CCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhccccc
Q 031610 75 -APDIAKTFLHKLGI--HSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 75 -~~~~~~~~l~~l~l--~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (156)
... +..+++.+|+ ..+|..+++++. ..||.+.. .++++++ .+|++|....+..++...
T Consensus 144 ~~~t-~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~~i-------~I~IGDs~~Di~aA~~AG 204 (237)
T PRK11009 144 TETV-SKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKKNI-------RIFYGDSDNDITAAREAG 204 (237)
T ss_pred cHHH-HHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhcCC-------eEEEcCCHHHHHHHHHcC
Confidence 234 5666777999 788877776554 25666653 4444443 456777766655555444
No 93
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.13 E-value=2.3e-10 Score=83.50 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=58.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc----CCCCCCHHHHHHHHHHhCCCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY----TKDSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~----~~~kp~p~~~~~~~~~~~~~~ 122 (156)
.+++||+.++|+.|+++ ++++|+||+.... +...++.+++..+|...+...+. +..++.|.....+++.++..+
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 45789999999999999 9999999999887 79999999998888654433211 122344555666777777666
Q ss_pred cCceeE
Q 031610 123 KRSCSI 128 (156)
Q Consensus 123 ~~~~~v 128 (156)
.++.+|
T Consensus 145 ~~~v~i 150 (205)
T PRK13582 145 YRVIAA 150 (205)
T ss_pred CeEEEE
Confidence 655433
No 94
>PLN02645 phosphoglycolate phosphatase
Probab=99.12 E-value=4.7e-10 Score=87.33 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCCCCCceEEE
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~~~f~~~~~ 97 (156)
.+++++||+|||||+. + .++||+.++|++|+++|++++++||++.... ..+.++.+|+...++.++.
T Consensus 27 ~~~~~~~D~DGtl~~~-------~---~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~t 95 (311)
T PLN02645 27 SVETFIFDCDGVIWKG-------D---KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFS 95 (311)
T ss_pred hCCEEEEeCcCCeEeC-------C---ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEee
Confidence 5899999999999972 2 4789999999999999999999999985441 2344577888766655554
No 95
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.12 E-value=1.3e-10 Score=85.97 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
|+|||||||++ +++ .+.+.+.++|++|+++|+++++||||+... +..+++.+++..++.
T Consensus 1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~~~i 59 (225)
T TIGR01482 1 IASDIDGTLTD------PNR---AINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPDPVI 59 (225)
T ss_pred CeEeccCccCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCeEE
Confidence 58999999998 443 477889999999999999999999999988 688889998655543
No 96
>PTZ00174 phosphomannomutase; Provisional
Probab=99.11 E-value=1.5e-10 Score=87.24 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=47.0
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
.+|+|++||||||++ +++ ++.|.++++|++++++|+++++||||+... +...++.
T Consensus 4 ~~klia~DlDGTLL~------~~~---~is~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~l~~ 58 (247)
T PTZ00174 4 KKTILLFDVDGTLTK------PRN---PITQEMKDTLAKLKSKGFKIGVVGGSDYPK-IKEQLGE 58 (247)
T ss_pred CCeEEEEECcCCCcC------CCC---CCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHhh
Confidence 369999999999998 444 577889999999999999999999999877 5666653
No 97
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.11 E-value=5.5e-10 Score=79.47 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=60.4
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc------------cCCCCCCHHHHHHH
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM------------YTKDSSNASSSEST 114 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~------------~~~~kp~p~~~~~~ 114 (156)
..++|++.++++.++++|++++|+|++.... ++..++.+|+..+|...+..++ ......++..+..+
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~ 150 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKEL 150 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHH
Confidence 4578999999999999999999999999887 7999999999877654433221 11223345677777
Q ss_pred HHHhCCCCcCceeE
Q 031610 115 CAIFHFHPKRSCSI 128 (156)
Q Consensus 115 ~~~~~~~~~~~~~v 128 (156)
++..++.++++.++
T Consensus 151 ~~~~~~~~~~~~~i 164 (177)
T TIGR01488 151 LEESKITLKKIIAV 164 (177)
T ss_pred HHHhCCCHHHEEEE
Confidence 88888877765443
No 98
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.11 E-value=1.1e-10 Score=86.75 Aligned_cols=59 Identities=32% Similarity=0.510 Sum_probs=51.8
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
|++||||||++ +++ .+.|.++++|+.|+++|+++++||||+... +..++..+++..++.
T Consensus 1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~~~I 59 (254)
T PF08282_consen 1 IFSDLDGTLLN------SDG---KISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDDYFI 59 (254)
T ss_dssp EEEECCTTTCS------TTS---SSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCSEEE
T ss_pred cEEEECCceec------CCC---eeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchhhhc
Confidence 68999999998 444 477999999999999999999999999988 799999999875443
No 99
>PLN02887 hydrolase family protein
Probab=99.11 E-value=1.3e-10 Score=96.75 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=55.2
Q ss_pred cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 17 ~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
....++|+|++||||||++ +++ .+.+.++++|++|+++|+++++||||+... +...++.+++.
T Consensus 303 ~~~~~iKLIa~DLDGTLLn------~d~---~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~ 365 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLN------SKS---QISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA 365 (580)
T ss_pred hhccCccEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence 3556899999999999998 444 588999999999999999999999999888 68889988875
No 100
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.11 E-value=1.5e-10 Score=85.60 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=50.3
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-CCCce
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVP 94 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~-~~f~~ 94 (156)
+|++||||||++ ++. ...+.++++|+.|+++|+++++||||+... +...++.+++. .++.+
T Consensus 1 ~i~~DlDGTLL~------~~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~~~~~I~ 62 (221)
T TIGR02463 1 WVFSDLDGTLLD------SHS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLTGDPYIA 62 (221)
T ss_pred CEEEeCCCCCcC------CCC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCCcEEE
Confidence 489999999998 333 234448999999999999999999999988 79999999987 44443
No 101
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.10 E-value=3.9e-10 Score=73.92 Aligned_cols=63 Identities=29% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHcCCCCCCceEEE
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l~l~~~f~~~~~ 97 (156)
++||+|||||.+ . .+.||+.++|++|+++|++++++||++... ...+.++.+|+.---+.+++
T Consensus 1 ~l~D~dGvl~~g-------~---~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t 65 (101)
T PF13344_consen 1 FLFDLDGVLYNG-------N---EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT 65 (101)
T ss_dssp EEEESTTTSEET-------T---EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE
T ss_pred CEEeCccEeEeC-------C---CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC
Confidence 689999999972 2 689999999999999999999999887433 13555677888754444544
No 102
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.10 E-value=2.5e-09 Score=81.31 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCCceEEEecCCcccccccc---------------c--cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--
Q 031610 18 FENLPRLVVFDLDYTLWPFYCE---------------C--CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI-- 78 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~---------------~--~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~-- 78 (156)
....+.+|+||+|+|+++.... + +.......++||+.++|+.|+++|++++++|||.....
T Consensus 71 ~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~ 150 (266)
T TIGR01533 71 VKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAA 150 (266)
T ss_pred cCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHH
Confidence 3566789999999999874311 0 01123346899999999999999999999999985431
Q ss_pred HHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHH
Q 031610 79 AKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIE 137 (156)
Q Consensus 79 ~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (156)
....++.+|+...+. .++.. +.. ++++.....+.+.+++ +++++|+...
T Consensus 151 T~~~Lkk~Gi~~~~~d~lllr-~~~--~~K~~rr~~I~~~y~I-------vl~vGD~~~D 200 (266)
T TIGR01533 151 TLKNLKRFGFPQADEEHLLLK-KDK--SSKESRRQKVQKDYEI-------VLLFGDNLLD 200 (266)
T ss_pred HHHHHHHcCcCCCCcceEEeC-CCC--CCcHHHHHHHHhcCCE-------EEEECCCHHH
Confidence 246678889876543 34433 222 4566666666654443 5667776443
No 103
>PLN02811 hydrolase
Probab=99.09 E-value=4.2e-10 Score=83.26 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=68.4
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEec--ccCCCCCCHHHHHHHHHHhC---CC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIY--MYTKDSSNASSSESTCAIFH---FH 121 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~--~~~~~kp~p~~~~~~~~~~~---~~ 121 (156)
..++||+.++|+.|+++|++++|+||...........+..++..+|+.+++++ +....||+|+++..++++++ +.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 46899999999999999999999999986542233444457788999999888 77888999999999999997 88
Q ss_pred CcCceeEe
Q 031610 122 PKRSCSIF 129 (156)
Q Consensus 122 ~~~~~~v~ 129 (156)
|+++++|+
T Consensus 157 ~~~~v~Ig 164 (220)
T PLN02811 157 PGKVLVFE 164 (220)
T ss_pred ccceEEEe
Confidence 88876543
No 104
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.09 E-value=7e-10 Score=79.51 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=45.7
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEe
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVI 98 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~ 98 (156)
.+++|++.++|+.|+++|++++++||+.... ++..++.+++..+|+.+++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhheeEEecc
Confidence 3689999999999999999999999999887 68999999999999887753
No 105
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.09 E-value=2e-10 Score=85.53 Aligned_cols=59 Identities=29% Similarity=0.453 Sum_probs=50.1
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
+|+|||||||++ .. ...+++.++|++|+++|+++++||||+... +...++.+++..++.
T Consensus 1 li~~DlDGTLl~------~~----~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~~~I 59 (225)
T TIGR02461 1 VIFTDLDGTLLP------PG----YEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEPPFI 59 (225)
T ss_pred CEEEeCCCCCcC------CC----CCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCcEE
Confidence 489999999997 22 245679999999999999999999999888 688999999866543
No 106
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.03 E-value=8.9e-10 Score=80.16 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=68.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce-EEEecc----------cCCCCCCHHHHHHHHH
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-MVVIYM----------YTKDSSNASSSESTCA 116 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~-~~~~~~----------~~~~kp~p~~~~~~~~ 116 (156)
.++|++.++|+.++++|++++|+|++.... ++.+++.+|++.+|.. +...++ ....++++..+..+++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 478999999999999999999999999887 7999999999887754 222111 1223556667888888
Q ss_pred HhCCCCcCceeEeeehhhhHHHhhccc
Q 031610 117 IFHFHPKRSCSIFMFQQVMIEMFQNRH 143 (156)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~ 143 (156)
+.++.++++..++ -+..++.|.....
T Consensus 166 ~~~~~~~~~~~~g-Ds~~D~~~~~~a~ 191 (202)
T TIGR01490 166 EEQIDLKDSYAYG-DSISDLPLLSLVG 191 (202)
T ss_pred HcCCCHHHcEeee-CCcccHHHHHhCC
Confidence 8899888876544 3334555554433
No 107
>PTZ00445 p36-lilke protein; Provisional
Probab=99.03 E-value=1.4e-09 Score=79.32 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCCceEEEecCCcccc----cccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--------------HH
Q 031610 20 NLPRLVVFDLDYTLWP----FYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IA 79 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~----~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--------------~~ 79 (156)
..+|+|++|+|.||+. +|.... ...-...+.|.....+.+|++.|++++|+|=+.... ++
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li 120 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMV 120 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHH
Confidence 4689999999999997 122110 111112367888889999999999999999555432 46
Q ss_pred HHHHHHcCCCCCCceEEEec-----------ccCCCCCCHHH--H--HHHHHHhCCCCcCceeEeeehhhhHHHhhccc
Q 031610 80 KTFLHKLGIHSMFVPMVVIY-----------MYTKDSSNASS--S--ESTCAIFHFHPKRSCSIFMFQQVMIEMFQNRH 143 (156)
Q Consensus 80 ~~~l~~l~l~~~f~~~~~~~-----------~~~~~kp~p~~--~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 143 (156)
...++..+-+.-+..++++. ..+..||.|.. + +.+++++|+.|+++ +|+||....--.++-
T Consensus 121 ~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~---LFIDD~~~NVeaA~~ 196 (219)
T PTZ00445 121 EAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEI---LFIDDDMNNCKNALK 196 (219)
T ss_pred HHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHe---EeecCCHHHHHHHHH
Confidence 77777665444444444332 23668999999 8 99999999999986 467777665554443
No 108
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.02 E-value=1.8e-09 Score=78.81 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=68.7
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC------CCCCCHHHHHHHHHHhCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT------KDSSNASSSESTCAIFHF 120 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~------~~kp~p~~~~~~~~~~~~ 120 (156)
.++-+-.+++|-.|+.++ -.+.||..... +.+.++.+|+.++|+.+++.+... .-||.++.++.+++..|+
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 356677888999998875 66789999888 899999999999999998765333 359999999999999999
Q ss_pred C-CcCceeEeeehhhhHH
Q 031610 121 H-PKRSCSIFMFQQVMIE 137 (156)
Q Consensus 121 ~-~~~~~~v~~~~~~~~~ 137 (156)
. |..++ |++|+...
T Consensus 176 ~~p~~t~---FfDDS~~N 190 (244)
T KOG3109|consen 176 DSPRNTY---FFDDSERN 190 (244)
T ss_pred CCcCceE---EEcCchhh
Confidence 8 77763 56665443
No 109
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.01 E-value=6.9e-10 Score=83.91 Aligned_cols=61 Identities=31% Similarity=0.428 Sum_probs=50.3
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+|++||||||++ ..+ ...+.++++|++|+++|+++++||||+... +..+++.+++..++.+
T Consensus 1 li~~DlDGTll~------~~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~~~I~ 61 (256)
T TIGR01486 1 WIFTDLDGTLLD------PHG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLEDPFIV 61 (256)
T ss_pred CEEEcCCCCCcC------CCC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCcEEE
Confidence 489999999998 333 133468999999999999999999999988 7999999998655443
No 110
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.00 E-value=1.2e-09 Score=82.87 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=49.1
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHcCCCC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHS 90 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l~l~~ 90 (156)
+|+++||+|||||+. +.....+.|++.++|++|+++|++++++||++... .....++.+|++-
T Consensus 1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~ 65 (257)
T TIGR01458 1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI 65 (257)
T ss_pred CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 478999999999973 22112388999999999999999999999987653 1466677788763
No 111
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.00 E-value=9.3e-09 Score=72.56 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=44.8
Q ss_pred eEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH---HHHHH
Q 031610 24 LVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK---TFLHK 85 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~---~~l~~ 85 (156)
+|++|+||||++.....+ +.-....+.|++.+++++++++|++++++|+|+... +. .++..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHH
Confidence 489999999998421100 000012578999999999999999999999999776 43 66666
No 112
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.99 E-value=1.3e-09 Score=82.33 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=52.8
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC---CCChhHHHHHHHHcCCCCCCceEEEe
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVVI 98 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~---~~~~~~~~~~l~~l~l~~~f~~~~~~ 98 (156)
++.++||+||||++. . .+.|++.++|++|+++|++++++|| ++... ....++.+|++...+.++++
T Consensus 1 ~~~~~~D~DGtl~~~------~----~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 1 YKGYLIDLDGTMYKG------K----ERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDIPATLETVFTA 69 (249)
T ss_pred CCEEEEeCCCceEcC------C----eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCCChhhEeeH
Confidence 478999999999972 2 3668999999999999999999997 55565 57778889987655555543
No 113
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.95 E-value=6.7e-09 Score=79.63 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=49.6
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCCCCCceEE
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~~~f~~~~ 96 (156)
+++++||+||||++. . .++|++.++|++|+++|++++++||++.... ....++.+|+....+.++
T Consensus 2 ~~~~~~D~DGtl~~~-------~---~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ 68 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG-------E---RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLF 68 (279)
T ss_pred ccEEEEeCCCceEcC-------C---eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEe
Confidence 688999999999972 2 4789999999999999999999999774431 234567788754433343
No 114
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.95 E-value=3e-09 Score=75.41 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=77.9
Q ss_pred ceEEEecCCccccccccccc---------------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~---------------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
+.+++|||+||+........ ..-.....||+.++|+.|++. +.++|.|+++... ++.+++.++
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD 79 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence 57999999999964322110 011134889999999999887 9999999999998 899999999
Q ss_pred CCC-CCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHh
Q 031610 88 IHS-MFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 88 l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (156)
... +|...++.+.....+|. +...++.++.+++++ ++.++.-..+.
T Consensus 80 p~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v---IiVDD~~~~~~ 126 (162)
T TIGR02251 80 RGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV---IIIDNSPYSYS 126 (162)
T ss_pred cCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE---EEEeCChhhhc
Confidence 876 78888777666555555 455566677666654 44555544333
No 115
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.94 E-value=3.7e-09 Score=71.79 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=40.1
Q ss_pred ceEEEecCCccccccccccccC--CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~--~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
|+|++|+||||+.. ..+ ....+.+.+.++|+.|+++|+.++++|||+...
T Consensus 2 K~i~~DiDGTL~~~-----~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 2 KRLVMDLDNTITLT-----ENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred CEEEEeCCCCcccC-----CCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 68999999999862 111 113477899999999999999999999998654
No 116
>PRK08238 hypothetical protein; Validated
Probab=98.91 E-value=1.5e-08 Score=82.99 Aligned_cols=92 Identities=20% Similarity=0.091 Sum_probs=69.8
Q ss_pred ceEEEecCCcccccccccc------------------------------------ccCCCcccCCcHHHHHHHHHHCCCe
Q 031610 23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH 66 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~------------------------------------~~~~~~~l~~~~~~~L~~L~~~G~~ 66 (156)
.-+++|+||||+.+..-.. -+....++.|++.+.+++++++|++
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~ 90 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK 90 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence 3599999999987644321 2222335779999999999999999
Q ss_pred EEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610 67 VAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 67 v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 119 (156)
++++|+++... ++..++.+|+ |+.++++++....||++... .+.+.++
T Consensus 91 v~LaTas~~~~-a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~-~l~~~l~ 138 (479)
T PRK08238 91 LVLATASDERL-AQAVAAHLGL---FDGVFASDGTTNLKGAAKAA-ALVEAFG 138 (479)
T ss_pred EEEEeCCCHHH-HHHHHHHcCC---CCEEEeCCCccccCCchHHH-HHHHHhC
Confidence 99999999887 7999999987 88888888777777765432 3434443
No 117
>PRK10444 UMP phosphatase; Provisional
Probab=98.90 E-value=3.4e-09 Score=80.05 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=46.5
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH 89 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~ 89 (156)
|++++||+|||||++ . .+.|++.++|++|+++|++++++||++.... ..+.++.+|+.
T Consensus 1 ~~~v~~DlDGtL~~~------~----~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 1 IKNVICDIDGVLMHD------N----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred CcEEEEeCCCceEeC------C----eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 578999999999972 2 5789999999999999999999999987541 23444556764
No 118
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.90 E-value=9e-09 Score=75.54 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=40.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+++||+.++|+.+++.| +++|+||+.... +..+++.+|++.+|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an 112 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCH 112 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhce
Confidence 58999999999999975 999999999887 7999999999988763
No 119
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.90 E-value=4.9e-08 Score=74.54 Aligned_cols=136 Identities=18% Similarity=0.127 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHhccCCCCCceEEEecCCcccccccc-------cc--------------------------------
Q 031610 1 MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCE-------CC-------------------------------- 41 (156)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~-------~~-------------------------------- 41 (156)
|+|.++|.+-.-.+.....++.. |+.|.|-||..++.. ++
T Consensus 2 i~d~~~~~~~~~~~~~~g~~~lq-visDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~~ 80 (277)
T TIGR01544 2 MADPTRVEEIICGLVKGGAAKLQ-IISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDPV 80 (277)
T ss_pred CCCHHHHHHHHHHHHhcChhheE-EeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHHHHHHhhccceecCCC
Confidence 57888888555555556777664 999999999876531 00
Q ss_pred ----------------------------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 42 ----------------------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 42 ----------------------------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
-......+.||+.++++.|+++|++++|+|++.... +..+++.++
T Consensus 81 ~~~~eK~~~m~eWw~k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lg 159 (277)
T TIGR01544 81 LTVEEKYPYMVEWWTKSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAG 159 (277)
T ss_pred CChHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcC
Confidence 111235799999999999999999999999999887 799999999
Q ss_pred CCCCCceEE------EecccCCCCCCH---------HHHHHHHHHhC--CCCcCceeEeeehhhhHHHh
Q 031610 88 IHSMFVPMV------VIYMYTKDSSNA---------SSSESTCAIFH--FHPKRSCSIFMFQQVMIEMF 139 (156)
Q Consensus 88 l~~~f~~~~------~~~~~~~~kp~p---------~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 139 (156)
+...+..++ ..+.....+|.| ..++.+.+.++ ..+..+..++ -+.+++.|.
T Consensus 160 l~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vG-Ds~~Dl~ma 227 (277)
T TIGR01544 160 VYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLG-DSQGDLRMA 227 (277)
T ss_pred CCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHHHHhCccCCcceEEEEC-cChhhhhHh
Confidence 876665552 223333346666 56666778887 4555544322 233344443
No 120
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.89 E-value=3e-09 Score=89.31 Aligned_cols=64 Identities=28% Similarity=0.409 Sum_probs=53.7
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
..|+|++||||||++ .++ ...+.+.++|++|+++|+++++||||+... +..+++.+++..++..
T Consensus 415 ~~KLIfsDLDGTLLd------~d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~~~I~ 478 (694)
T PRK14502 415 FKKIVYTDLDGTLLN------PLT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKDPFIT 478 (694)
T ss_pred eeeEEEEECcCCCcC------CCC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCCeEEE
Confidence 468999999999998 333 355678999999999999999999999988 6899999998655443
No 121
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.87 E-value=6.8e-09 Score=76.58 Aligned_cols=79 Identities=10% Similarity=-0.054 Sum_probs=56.7
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc---eEEEecccCCCCCCHHHH----------HH
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV---PMVVIYMYTKDSSNASSS----------ES 113 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~---~~~~~~~~~~~kp~p~~~----------~~ 113 (156)
..++||+.++|+.|+++|++++|+|++.... +..+++.++....+. ..+..+.....+|.|..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 4699999999999999999999999999877 688888875444432 223333445567776654 46
Q ss_pred HHHHhCCCCcCce
Q 031610 114 TCAIFHFHPKRSC 126 (156)
Q Consensus 114 ~~~~~~~~~~~~~ 126 (156)
+++.++..+.++.
T Consensus 148 ~l~~~~~~~~~~i 160 (214)
T TIGR03333 148 LIRKLSEPNDYHI 160 (214)
T ss_pred HHHHHhhcCCcEE
Confidence 6777776665543
No 122
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.80 E-value=1.2e-08 Score=74.50 Aligned_cols=55 Identities=33% Similarity=0.462 Sum_probs=46.5
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
++++|+||||++ +.. .++.+.+.++|++|+++|++++++|||+... +..+++.++
T Consensus 1 li~~D~DgTL~~------~~~--~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLD------PNA--HELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcC------CCC--CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence 489999999997 331 2577999999999999999999999999888 688887743
No 123
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.74 E-value=1.2e-08 Score=76.78 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=49.9
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
+|+.||||||+++.. .+ ....|...+++++++++|+++++||||+... ++.+++.+++..+
T Consensus 3 li~tDlDGTLl~~~~---~~---~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~p 63 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD---GD---NQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLTP 63 (249)
T ss_pred EEEEcCCCcCcCCCC---CC---hHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCCC
Confidence 688999999997321 12 3577999999999999999999999999888 6888887876543
No 124
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2e-08 Score=76.37 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=52.6
Q ss_pred cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHH-cCCCCCCc
Q 031610 17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHK-LGIHSMFV 93 (156)
Q Consensus 17 ~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~-l~l~~~f~ 93 (156)
+....++.++||+||||+++ + .++||+.++|+.|+++|+++.++||++... +....++. .+++...+
T Consensus 3 ~~~~~y~~~l~DlDGvl~~G-------~---~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~ 72 (269)
T COG0647 3 DVMDKYDGFLFDLDGVLYRG-------N---EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD 72 (269)
T ss_pred chhhhcCEEEEcCcCceEeC-------C---ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH
Confidence 34556789999999999973 2 689999999999999999999999987654 12344455 45544444
Q ss_pred eEEE
Q 031610 94 PMVV 97 (156)
Q Consensus 94 ~~~~ 97 (156)
.+++
T Consensus 73 ~i~T 76 (269)
T COG0647 73 DIVT 76 (269)
T ss_pred Heec
Confidence 4443
No 125
>PLN02423 phosphomannomutase
Probab=98.73 E-value=2.4e-08 Score=75.28 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=40.9
Q ss_pred CCce-EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 21 LPRL-VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 21 ~~k~-i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
+.++ ++|||||||++ ++. .+.|.+.++|++|+++ +++++||||+... ....+.
T Consensus 5 ~~~~i~~~D~DGTLl~------~~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~-~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTA------PRK---EATPEMLEFMKELRKV-VTVGVVGGSDLSK-ISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcC------CCC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHH-HHHHhc
Confidence 3454 45999999998 444 4778999999999987 9999999997655 344443
No 126
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.70 E-value=6.4e-08 Score=68.77 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=69.1
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC--eEEEEcCCC-------ChhHHHHHHHHcCCC
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI--HVAVASRSP-------APDIAKTFLHKLGIH 89 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~--~v~i~T~~~-------~~~~~~~~l~~l~l~ 89 (156)
...+|+++||.|+||.. .+. ..+.|...+.+++|++.+. +++|+||+. ... ++.+-+.+|+.
T Consensus 38 ~~Gik~li~DkDNTL~~------~~~--~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp 108 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTP------PYE--DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP 108 (168)
T ss_pred hcCceEEEEcCCCCCCC------CCc--CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence 45789999999999986 222 2688999999999999876 499999984 444 56666778853
Q ss_pred CCCceEEEecccCCCCCCHHHHHHHHHHhCCC-----CcCceeEe--eehhhhHHHhhccccccc
Q 031610 90 SMFVPMVVIYMYTKDSSNASSSESTCAIFHFH-----PKRSCSIF--MFQQVMIEMFQNRHSMLD 147 (156)
Q Consensus 90 ~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~-----~~~~~~v~--~~~~~~~~~~~~~~~~~~ 147 (156)
-+. ....|| ..+..+.+.++.. |++..+|+ ++||. ++-||+-+++
T Consensus 109 vl~--------h~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDV---l~gN~~G~~t 160 (168)
T PF09419_consen 109 VLR--------HRAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDV---LMGNRMGSYT 160 (168)
T ss_pred EEE--------eCCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHH---HHhhccCceE
Confidence 111 012466 5555666666543 55554443 23333 3456665543
No 127
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.69 E-value=2.9e-07 Score=68.52 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHhcc---CCCCCceEEEecCCcccccccc----------c-------cccCCCcccCCcHHHHHHHHHH
Q 031610 3 DLEKVKNEALEIIGQ---FENLPRLVVFDLDYTLWPFYCE----------C-------CYEDEIPYLYPHAKGILEALKE 62 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~~k~i~fDlDGTL~~~~~~----------~-------~~~~~~~~l~~~~~~~L~~L~~ 62 (156)
|++.|+.+|..-+.. ..+...+++||+|.|+++.... . +-.....+..|++.++++.|++
T Consensus 55 D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~ 134 (229)
T TIGR01675 55 DVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIE 134 (229)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 567777777766653 3456789999999999874211 0 0113344688999999999999
Q ss_pred CCCeEEEEcCCCChh--HHHHHHHHcCCCCC
Q 031610 63 KGIHVAVASRSPAPD--IAKTFLHKLGIHSM 91 (156)
Q Consensus 63 ~G~~v~i~T~~~~~~--~~~~~l~~l~l~~~ 91 (156)
+|++++++|||+... ....-|.+.|+..+
T Consensus 135 ~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 135 LGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 999999999998533 12455667787765
No 128
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.63 E-value=5.4e-08 Score=74.22 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=47.5
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
.+|++|+||||++.. +......+.+.++++|+.|++ .|+.++|+|||+... +..+++.++
T Consensus 15 ~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~ 75 (266)
T PRK10187 15 YAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYR 75 (266)
T ss_pred EEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCccc
Confidence 589999999999721 112223678999999999998 799999999999888 677776654
No 129
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.60 E-value=4.8e-08 Score=72.96 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=43.9
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+|++|+||||++ ++. .+.+-+ ++++ ++++|++++++|||+... +..+++.+++..
T Consensus 1 li~~DlDgTLl~------~~~---~~~~~~-~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~~ 55 (236)
T TIGR02471 1 LIITDLDNTLLG------DDE---GLASFV-ELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLPS 55 (236)
T ss_pred CeEEeccccccC------CHH---HHHHHH-HHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCCC
Confidence 478999999998 333 244433 6776 689999999999999998 799999998753
No 130
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=98.59 E-value=4e-07 Score=69.07 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
....+.+|+||||.||+. +.+...-..|.+.+.|..|++.|..+++=|.+.+.. +...++++++.++|+.+++
T Consensus 118 ~~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~Fd~ii~ 190 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYFDIIIC 190 (297)
T ss_pred cCCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCccccEEEEe
Confidence 344567899999999997 344333467889999999999999999999998888 7999999999999999876
Q ss_pred e
Q 031610 98 I 98 (156)
Q Consensus 98 ~ 98 (156)
.
T Consensus 191 ~ 191 (297)
T PF05152_consen 191 G 191 (297)
T ss_pred C
Confidence 4
No 131
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.59 E-value=5.9e-07 Score=63.31 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=59.6
Q ss_pred CCCceEEEecCCccccccccccc--------------------------cCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCY--------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~--------------------------~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
+....+++|||.||+.+...... ......++||+.++|+.|++. +.++|+|++
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence 34567999999999975333110 011234799999999999855 999999999
Q ss_pred CChhHHHHHHHHcCCCC-CC-ceEEEeccc
Q 031610 74 PAPDIAKTFLHKLGIHS-MF-VPMVVIYMY 101 (156)
Q Consensus 74 ~~~~~~~~~l~~l~l~~-~f-~~~~~~~~~ 101 (156)
+... +..+++.++... +| ..+++.++.
T Consensus 83 ~~~y-A~~vl~~ldp~~~~F~~ri~~rd~~ 111 (156)
T TIGR02250 83 TRAY-AQAIAKLIDPDGKYFGDRIISRDES 111 (156)
T ss_pred cHHH-HHHHHHHhCcCCCeeccEEEEeccC
Confidence 9998 899999999885 77 445555543
No 132
>PRK11590 hypothetical protein; Provisional
Probab=98.57 E-value=1.6e-07 Score=69.11 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred ccCCcHHHHH-HHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 48 ~l~~~~~~~L-~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
.++|++.+.| +.++++|++++|+||++... ++..++.+++
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccc
Confidence 4689999999 57888999999999999887 7999999885
No 133
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.50 E-value=2e-07 Score=65.51 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=54.5
Q ss_pred ceEEEecCCcccccccccc----------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC-CCC
Q 031610 23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM 91 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~----------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l-~~~ 91 (156)
|++++||||||+....... ..+-...+.||+.++|+.|.+. +.++|.|++.... +..+++.+.. ..+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~ 78 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL 78 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence 5799999999997533210 0112345899999999999555 9999999999888 8999999987 457
Q ss_pred CceEEEeccc
Q 031610 92 FVPMVVIYMY 101 (156)
Q Consensus 92 f~~~~~~~~~ 101 (156)
|...++.+..
T Consensus 79 ~~~~~~r~~~ 88 (159)
T PF03031_consen 79 FSRRLYRDDC 88 (159)
T ss_dssp EEEEEEGGGS
T ss_pred cccccccccc
Confidence 7777765543
No 134
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.49 E-value=3.7e-07 Score=67.00 Aligned_cols=61 Identities=30% Similarity=0.426 Sum_probs=50.0
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
.+++.+||.|+||||+++ .. ..-| +.+.+.+|++.|+++++||++...+ ...+.+.+++.+
T Consensus 4 ~~~~~lIFtDlD~TLl~~------~y---e~~p-A~pv~~el~d~G~~Vi~~SSKT~aE-~~~l~~~l~v~~ 64 (274)
T COG3769 4 IQMPLLIFTDLDGTLLPH------SY---EWQP-AAPVLLELKDAGVPVILCSSKTRAE-MLYLQKSLGVQG 64 (274)
T ss_pred cccceEEEEcccCcccCC------CC---CCCc-cchHHHHHHHcCCeEEEeccchHHH-HHHHHHhcCCCC
Confidence 468899999999999983 22 1223 6689999999999999999999988 588888899873
No 135
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.46 E-value=4.1e-07 Score=68.17 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=46.2
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC---ChhHHHHHHHH-cCCCCCCceEEE
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVV 97 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~---~~~~~~~~l~~-l~l~~~f~~~~~ 97 (156)
++||+||||+++ . .++|++.++|+.++++|+++.++||.+ ... ..+.+.. +|+.--.+.++.
T Consensus 1 ~lfD~DGvL~~~------~----~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~-~~~~l~~~~g~~~~~~~iit 66 (236)
T TIGR01460 1 FLFDIDGVLWLG------H----KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEED-YAEKLSSLLGVDVSPDQIIT 66 (236)
T ss_pred CEEeCcCccCcC------C----ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHHhcCCCCCHHHeee
Confidence 589999999983 2 478999999999999999999999655 344 3445555 676544444443
No 136
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.42 E-value=1.9e-06 Score=62.09 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CCceE--------E-Eecc---cCCCCCCHH
Q 031610 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPM--------V-VIYM---YTKDSSNAS 109 (156)
Q Consensus 44 ~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f~~~--------~-~~~~---~~~~kp~p~ 109 (156)
.+.+++.||+++++.+|+++|..++++||+-... +..+...||++. .+.-. + +.+. ......+++
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~ 162 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE 162 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence 4456799999999999999999999999999887 799999999986 32221 1 1111 112344566
Q ss_pred HHHHHHHHhCCCCcCceeEe
Q 031610 110 SSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~v~ 129 (156)
.+..+++ +.+.+..++|+
T Consensus 163 ~i~~lrk--~~~~~~~~mvG 180 (227)
T KOG1615|consen 163 VIALLRK--NYNYKTIVMVG 180 (227)
T ss_pred HHHHHHh--CCChheeEEec
Confidence 7777666 66666666655
No 137
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.41 E-value=8e-07 Score=65.56 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=34.9
Q ss_pred ccCCcHHHHHH-HHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 48 ~l~~~~~~~L~-~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
.++|++.++|+ .++++|++++|+||++... ++.+.+..++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccc
Confidence 57999999996 7888999999999999887 7888888655
No 138
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.40 E-value=6.5e-07 Score=65.17 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=62.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCcee
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCS 127 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~ 127 (156)
+++|++.++|+.|+++|++++++||..... +....+.+|+.. ..+.+... .||.+.++..+++.++..+.++.+
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~---~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~ 200 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFD---SIVFARVI--GKPEPKIFLRIIKELQVKPGEVAM 200 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCS---EEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEE
T ss_pred cchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccc---cccccccc--ccccchhHHHHHHHHhcCCCEEEE
Confidence 588999999999999999999999999888 799999999944 22222111 589999999999999999996655
Q ss_pred Ee
Q 031610 128 IF 129 (156)
Q Consensus 128 v~ 129 (156)
++
T Consensus 201 vG 202 (215)
T PF00702_consen 201 VG 202 (215)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 139
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.33 E-value=1e-06 Score=68.94 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=43.3
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC----CCeEEEEcCCCC---hhHHHHHHHHcCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA---PDIAKTFLHKLGIH 89 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~----G~~v~i~T~~~~---~~~~~~~l~~l~l~ 89 (156)
+++||+|||||++ . .+.|++.++++.|+++ |+++.++||... ...+..+.+.+|+.
T Consensus 2 ~~ifD~DGvL~~g------~----~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLFRG------K----KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceECC------c----cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 5899999999982 2 4689999999999998 999999998863 33223333677764
No 140
>PLN03017 trehalose-phosphatase
Probab=98.29 E-value=2.1e-06 Score=67.95 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=43.4
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~ 82 (156)
....+||+|+||||++.- .+.....+.++++++|++|+ +|++++|+|||+... +..+
T Consensus 109 ~k~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~-l~~~ 165 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDK-VYNF 165 (366)
T ss_pred CCCeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHH-HHHh
Confidence 344678889999999421 11222358899999999998 789999999999887 5665
No 141
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.27 E-value=1.5e-05 Score=60.68 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHhcc-CCCCCceEEEecCCcccccccc------------------ccccCCCcccCCcHHHHHHHHHHC
Q 031610 3 DLEKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEK 63 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~k~i~fDlDGTL~~~~~~------------------~~~~~~~~~l~~~~~~~L~~L~~~ 63 (156)
|.+.++.+|..-+.. ..+...+++||+|+|+++.... .+-.....+..|++.++.+.++++
T Consensus 81 D~~~v~~~a~~y~~~~~~~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~ 160 (275)
T TIGR01680 81 DSKTVNQQAYFFARDLEVHEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSL 160 (275)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHC
Confidence 567777777666543 2234589999999999852110 011122346789999999999999
Q ss_pred CCeEEEEcCCCChh--HHHHHHHHcCCCCC
Q 031610 64 GIHVAVASRSPAPD--IAKTFLHKLGIHSM 91 (156)
Q Consensus 64 G~~v~i~T~~~~~~--~~~~~l~~l~l~~~ 91 (156)
|++++++|||.... ....-|.+.|...+
T Consensus 161 G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~ 190 (275)
T TIGR01680 161 GFKIIFLSGRLKDKQAVTEANLKKAGYHTW 190 (275)
T ss_pred CCEEEEEeCCchhHHHHHHHHHHHcCCCCc
Confidence 99999999998543 12333455666543
No 142
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.22 E-value=1.2e-06 Score=65.56 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCCceEEEecCCcccccccc------------------ccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HH
Q 031610 20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA 79 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~------------------~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~ 79 (156)
+.+.+|+||+|+|+++.... +...+. .+..|++.++++.++++|..|+++|||+... ..
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~-~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGK-APAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTG-GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhccc-CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 56789999999999863111 112222 3788999999999999999999999998653 12
Q ss_pred HHHHHHcCCCCC
Q 031610 80 KTFLHKLGIHSM 91 (156)
Q Consensus 80 ~~~l~~l~l~~~ 91 (156)
..-|.+.|...+
T Consensus 149 ~~nL~~~G~~~~ 160 (229)
T PF03767_consen 149 EKNLKKAGFPGW 160 (229)
T ss_dssp HHHHHHHTTSTB
T ss_pred HHHHHHcCCCcc
Confidence 344566776544
No 143
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=98.21 E-value=3.3e-06 Score=56.68 Aligned_cols=80 Identities=35% Similarity=0.531 Sum_probs=60.4
Q ss_pred HHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 11 ~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+++++.+..=-+..+.+|+|+|+++++.+..+.++....|+.++..|..|+++|+.++++|+.....++...|+.+.+..
T Consensus 7 ~~~fdldytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 7 AMQFDLDYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ 86 (144)
T ss_pred eeEEeccceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc
Confidence 34444443334455666666666666666668888888999999999999999999999998887766788888876654
No 144
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=98.21 E-value=5.9e-06 Score=60.20 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
+|..--+.++.......|++++|||+||+++-.. ..+......|++.++|+.+.+ .+.++|-|+..... +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y-a~~~l~~ 80 (195)
T TIGR02245 5 RIEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW-IEIKMTE 80 (195)
T ss_pred HHHhcCccccCCCCCCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH-HHHHHHH
Confidence 3333345666666777799999999999974211 112234588999999999988 69999999999888 7999998
Q ss_pred cCCC
Q 031610 86 LGIH 89 (156)
Q Consensus 86 l~l~ 89 (156)
+++.
T Consensus 81 l~~~ 84 (195)
T TIGR02245 81 LGVL 84 (195)
T ss_pred hccc
Confidence 8764
No 145
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.20 E-value=2.5e-06 Score=73.51 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=49.0
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
..++|+||+||||++.. .......+.+.+.++|++|.+ .|+.++|+|||+... +.+.+..++
T Consensus 491 ~~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~-l~~~~~~~~ 553 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDT-LERWFGDLP 553 (726)
T ss_pred cceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence 46899999999999731 112223577899999999999 599999999999888 687776654
No 146
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.19 E-value=7.2e-06 Score=58.62 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=69.3
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH-H---HcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL-H---KLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l-~---~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~ 122 (156)
..+||.+.++|++.++.|+++.|.|+++... ++++ . ..++..+|.+.+-. .--.|-....|..+++..|++|
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~A--QkL~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKA--QKLFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchh--HHHhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCc
Confidence 4699999999999999999999999998764 5544 2 23455566655421 1124667789999999999999
Q ss_pred cCceeEeeehhhhHHHhhccccc
Q 031610 123 KRSCSIFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 123 ~~~~~v~~~~~~~~~~~~~~~~~ 145 (156)
.+ |+|..|+..++-.++.-.
T Consensus 178 ~e---ilFLSDn~~EL~AA~~vG 197 (229)
T COG4229 178 AE---ILFLSDNPEELKAAAGVG 197 (229)
T ss_pred hh---eEEecCCHHHHHHHHhcc
Confidence 87 678888888887666543
No 147
>PLN02151 trehalose-phosphatase
Probab=98.16 E-value=5.2e-06 Score=65.52 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
...++|+|+||||.+.- .+.....+.|+++++|++|.+ +.+++|+|||+... +..++.
T Consensus 97 ~~~ll~lDyDGTL~PIv----~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~-l~~~~~ 154 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIV----DDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREK-VSSFVK 154 (354)
T ss_pred CceEEEEecCccCCCCC----CCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHH-HHHHcC
Confidence 44678899999999621 233344688999999999984 57999999999877 566553
No 148
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.14 E-value=8.2e-06 Score=62.46 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=47.6
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH---HHHcCCC
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF---LHKLGIH 89 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~---l~~l~l~ 89 (156)
....+..++||.||+||.+ . .+.||+.++++.|++.|..+.++||++... .+.. ++.+|+.
T Consensus 18 ~l~~~DtfifDcDGVlW~g-------~---~~ipGs~e~l~~L~~~gK~i~fvTNNStks-r~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 18 LLDSFDTFIFDCDGVLWLG-------E---KPIPGSPEALNLLKSLGKQIIFVTNNSTKS-REQYMKKFAKLGFN 81 (306)
T ss_pred HHhhcCEEEEcCCcceeec-------C---CCCCChHHHHHHHHHcCCcEEEEeCCCcch-HHHHHHHHHHhCcc
Confidence 3455778999999999962 2 588999999999999999999999987544 2333 4456655
No 149
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.09 E-value=5.8e-06 Score=72.20 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHH-HHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L-~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
+.++|++|+||||++. ......+.|++.++|++| ++.|..++|+|||+... +.+++..+
T Consensus 595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~-L~~~f~~~ 654 (854)
T PLN02205 595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKT-LADWFSPC 654 (854)
T ss_pred cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHH-HHHHhCCC
Confidence 5789999999999973 211235778999999997 77899999999999888 58777543
No 150
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.06 E-value=4.8e-05 Score=61.75 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=74.6
Q ss_pred CCCCCceEEEecCCcccccccccc-------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC-
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH- 89 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~-------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~- 89 (156)
..+..|++++|||+|||.+-...+ +......++..--+.+..|+++|..++|||-+.... +...++...-.
T Consensus 218 ~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~khp~Mi 296 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKHPDMI 296 (574)
T ss_pred hCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhCCCeE
Confidence 444569999999999998633321 111112345555668899999999999999888777 68877764311
Q ss_pred ---CCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHH
Q 031610 90 ---SMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIE 137 (156)
Q Consensus 90 ---~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (156)
..|.. ..-++-|+.+-+..+++++++.-.. .+|.||+-.+
T Consensus 297 Lkeedfa~-----~~iNW~~K~eNirkIAkklNlg~dS---mvFiDD~p~E 339 (574)
T COG3882 297 LKEEDFAV-----FQINWDPKAENIRKIAKKLNLGLDS---MVFIDDNPAE 339 (574)
T ss_pred eeHhhhhh-----heecCCcchhhHHHHHHHhCCCccc---eEEecCCHHH
Confidence 11222 1224788999999999999987653 4456665433
No 151
>PLN02382 probable sucrose-phosphatase
Probab=98.04 E-value=1.1e-05 Score=65.38 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=44.9
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHH-HHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L-~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
..+|+.||||||+++ ... ..+.+...+.+ +.+.++|+.++++|||+... +..+.+.+++..+
T Consensus 9 ~~lI~sDLDGTLL~~------~~~-~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~p 71 (413)
T PLN02382 9 RLMIVSDLDHTMVDH------HDP-ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLTP 71 (413)
T ss_pred CEEEEEcCCCcCcCC------CCc-cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCCC
Confidence 356888999999983 111 13443344444 88999999999999999887 6888888876543
No 152
>PLN02580 trehalose-phosphatase
Probab=98.00 E-value=1.5e-05 Score=63.63 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
...++|+|.||||.+.- .+.+...+.++++++|++|.+. .+++|+|||+... +..++.-
T Consensus 118 k~~~LfLDyDGTLaPIv----~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~-L~~~l~~ 176 (384)
T PLN02580 118 KKIALFLDYDGTLSPIV----DDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK-VYELVGL 176 (384)
T ss_pred CCeEEEEecCCccCCCC----CCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH-HHHHhCC
Confidence 44678889999998732 3444557889999999999988 5899999999887 5766643
No 153
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.00 E-value=1.6e-05 Score=59.53 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=44.1
Q ss_pred cccCCcHHHHHHHH--HHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 47 PYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 47 ~~l~~~~~~~L~~L--~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
.++.||+.++++.+ .+.|+.++|+|...... +..+|+..|+...|..+++
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~f-I~~iL~~~gl~~~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFF-IETILEHHGLRDCFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhH-HHHHHHhCCCccccceEEe
Confidence 46899999999999 45899999999999888 7999999999998877654
No 154
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.97 E-value=4.1e-06 Score=64.22 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=55.5
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE---EecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV---VIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~---~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
-++++.++++.|+++|+ ++|+||++........+...+...+|..+. ........||+|.++..+++++++.|+++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 46889999999998887 789999886431111122334444444432 22334457999999999999999999988
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
++|+
T Consensus 223 lmIG 226 (279)
T TIGR01452 223 LMVG 226 (279)
T ss_pred EEEC
Confidence 7654
No 155
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.96 E-value=6.2e-05 Score=52.94 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=44.6
Q ss_pred eEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh--HHHHHHHHc
Q 031610 24 LVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKL 86 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~--~~~~~l~~l 86 (156)
+|++|+|||+..+...-+ +.-......+|+.++.+.++++||++.=+|+|+... ..+.++...
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 489999999997532110 111112578999999999999999999999999432 235555555
No 156
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.91 E-value=1.6e-05 Score=59.84 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=39.9
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChh
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD 77 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~ 77 (156)
..+++||+||||.+.. .......+.+++.++|+.|.+. +..++|+|||+...
T Consensus 3 ~~~l~lD~DGTL~~~~----~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~ 55 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIV----PDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE 55 (244)
T ss_pred cEEEEEecCccccCCc----CCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence 4679999999999731 2233346789999999999776 46789999998655
No 157
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.89 E-value=2.6e-06 Score=64.69 Aligned_cols=80 Identities=8% Similarity=-0.063 Sum_probs=60.2
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC---CCCCCHHHHHHHHHHhCCCCcCc
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT---KDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~---~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
.+++..++++.|++.+++++++||+.... ....+..+++..+|..+.+..... ..||+|.++..+++++++.|+++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 46788899999999999999999988665 344445566666666544332222 26999999999999999999887
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
++|+
T Consensus 200 ~~vG 203 (257)
T TIGR01458 200 VMIG 203 (257)
T ss_pred EEEC
Confidence 6554
No 158
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.88 E-value=6.5e-05 Score=62.97 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=55.4
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
....+++..||+++... .....++|++.++|+.|+++| ++++++||.+... +...++++|++.+|..
T Consensus 363 g~~~~~v~~~~~~~g~i------~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f~~ 430 (556)
T TIGR01525 363 GKTVVFVAVDGELLGVI------ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVHAE 430 (556)
T ss_pred CcEEEEEEECCEEEEEE------EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeeecc
Confidence 45678889999887531 112369999999999999999 9999999999888 7999999999877753
No 159
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.78 E-value=5.4e-05 Score=59.72 Aligned_cols=52 Identities=21% Similarity=0.166 Sum_probs=45.9
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc-C-------CCCCCceEEEec
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVVIY 99 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l-~-------l~~~f~~~~~~~ 99 (156)
....|++.++|++|+++|++++|+||++... +...++.+ + +..+|+.++++.
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yFD~IIt~a 242 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYFDVVIVDA 242 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhCcEEEeCC
Confidence 3468999999999999999999999999988 79999996 7 889999887643
No 160
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.77 E-value=8.5e-06 Score=61.19 Aligned_cols=78 Identities=5% Similarity=-0.059 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceE--EEecccCCCCCCHHHHHHHHHHhCCCC-cCce
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--VVIYMYTKDSSNASSSESTCAIFHFHP-KRSC 126 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~--~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~~ 126 (156)
+++..++++.|.++|+++ ++||..... ....+..++...+|..+ .+.+.....||+|.++..++++++..+ ++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 688999999998899997 889998765 44455556655555543 344445578999999999999998764 5555
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 218 ~vG 220 (242)
T TIGR01459 218 MVG 220 (242)
T ss_pred EEC
Confidence 443
No 161
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=6.5e-05 Score=57.26 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=48.2
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHH
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~ 84 (156)
....+++++|.||||.+... +.....+.+++.++|+.|.++ ...++|+|||+..+ ...++.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~----~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~-l~~~~~ 76 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVP----HPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAE-LERLFG 76 (266)
T ss_pred cccceEEEEecccccccccc----CccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHhcC
Confidence 34568899999999998533 344457889999999999887 34699999999887 577665
No 162
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.60 E-value=8.3e-05 Score=53.88 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=22.4
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
.++.||+.++|++|.+.|..+.++|+++..
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 468999999999999999877777777643
No 163
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.55 E-value=0.00037 Score=58.26 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=51.9
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
..+++-.||++.... ....+++|++.++|++|+++|+ +++++||.+... +...++.+|++.+|..
T Consensus 343 ~~~~v~~~~~~~g~i------~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f~~ 408 (536)
T TIGR01512 343 TIVHVARDGTYLGYI------LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVHAE 408 (536)
T ss_pred eEEEEEECCEEEEEE------EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhhhc
Confidence 445666777766421 1123689999999999999999 999999999888 8999999999887753
No 164
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.49 E-value=0.00013 Score=55.17 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=40.7
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
..++++|+||||+++ +. .-.....+.++...+.++.++++|||+... +..+++..++.. -+++++
T Consensus 2 ~~ll~sDlD~Tl~~~------~~---~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~~-Pd~~I~ 66 (247)
T PF05116_consen 2 PRLLASDLDGTLIDG------DD---EALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLPQ-PDYIIT 66 (247)
T ss_dssp SEEEEEETBTTTBHC------HH---HHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-EE--SEEEE
T ss_pred CEEEEEECCCCCcCC------CH---HHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCCC-CCEEEe
Confidence 367999999999941 11 111223334443447889999999999888 799998887642 244444
No 165
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.47 E-value=0.00051 Score=57.76 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=51.3
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
....+.++.||+++.... -..+++|++.++|++|+++|++++++||..... ++.+++.+|++
T Consensus 384 g~~~~~~~~~~~~~g~~~------~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~ 445 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFA------LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN 445 (562)
T ss_pred CCEEEEEEECCEEEEEEE------ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc
Confidence 346688899999875211 112689999999999999999999999999888 79999999996
No 166
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.39 E-value=0.00032 Score=61.23 Aligned_cols=63 Identities=24% Similarity=0.099 Sum_probs=46.3
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHc
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
..++++|.||||.+..... .......+.|++.++|++|.+. +..++|+|||+... .++++...
T Consensus 507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~-L~~~~~~~ 570 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI-LDKNFGEY 570 (797)
T ss_pred CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH-HHHHhCCC
Confidence 4789999999999631100 0112245788999999999764 67999999999888 68877643
No 167
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=97.37 E-value=0.00013 Score=54.44 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=29.0
Q ss_pred EEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChh
Q 031610 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD 77 (156)
Q Consensus 26 ~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~ 77 (156)
|+|.||||.+.-. ......+.+++.++|+.|.+.. ..++|+|||+...
T Consensus 1 ~lDyDGTL~p~~~----~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVD----DPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---S-----GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCCCC----CccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 6899999998422 2344568899999999998764 4799999999665
No 168
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.36 E-value=0.00017 Score=53.19 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=43.6
Q ss_pred cccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610 47 PYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~ 96 (156)
.++.||+.++++.+++.|. .++|+|...... +..++++.++..+|..++
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfF-Ie~~Lea~~~~d~F~~If 132 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFF-IEEILEAAGIHDLFSEIF 132 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhH-HHHHHHHccHHHHHHHHh
Confidence 3588999999999999995 999999888888 799999999999888765
No 169
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.36 E-value=0.001 Score=52.79 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=66.1
Q ss_pred CCceEEEecCCcccccccccc---ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh-----------HHHHHHHHc
Q 031610 21 LPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-----------IAKTFLHKL 86 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~---~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~-----------~~~~~l~~l 86 (156)
..|.+.||+||||++...... ...+-..+++.+..-|..|.+.||.++|.||+.... .+..++..+
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl 153 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL 153 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence 467899999999998643211 001112478888899999999999999999876321 012223333
Q ss_pred CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC
Q 031610 87 GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF 120 (156)
Q Consensus 87 ~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 120 (156)
.-.|............||...++....+..+-
T Consensus 154 --~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd 185 (422)
T KOG2134|consen 154 --GVPIQLLAAIIKGKYRKPSTGMWEFLKRLEND 185 (422)
T ss_pred --CCceEEeeeccCCcccCcchhHHHHHHHHhhc
Confidence 33454444444567799999999999987763
No 170
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.23 E-value=0.00066 Score=59.90 Aligned_cols=63 Identities=21% Similarity=0.098 Sum_probs=46.6
Q ss_pred CceEEEecCCccccccccccccC-------CCcccCCcHHHHHHHHHHC-CCeEEEEcCCCChhHHHHHHHHcC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYED-------EIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~-------~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
..++|+|.||||.+.... +.. ....+.|++.++|+.|.+. +..++|+|||+... +..++..++
T Consensus 591 ~RLlfLDyDGTLap~~~~--P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~-Le~~fg~~~ 661 (934)
T PLN03064 591 NRLLILGFNATLTEPVDT--PGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV-LDENFGEFD 661 (934)
T ss_pred ceEEEEecCceeccCCCC--cccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence 478999999999974221 110 0234778899999999764 67999999999888 688876653
No 171
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.19 E-value=0.0013 Score=49.31 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=52.9
Q ss_pred cCCCCCceEEEecCCcccccccc--c---------------cccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHH
Q 031610 17 QFENLPRLVVFDLDYTLWPFYCE--C---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIA 79 (156)
Q Consensus 17 ~~~~~~k~i~fDlDGTL~~~~~~--~---------------~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~ 79 (156)
....+.++|+.|||.|++|.... . +..-...++.||+.++++..-++|..++.+|||......
T Consensus 74 ~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~ 153 (274)
T COG2503 74 KKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEK 153 (274)
T ss_pred cccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhccc
Confidence 34556679999999999984222 0 011223468899999999999999999999999865411
Q ss_pred ---HHHHHHcCCCCCC
Q 031610 80 ---KTFLHKLGIHSMF 92 (156)
Q Consensus 80 ---~~~l~~l~l~~~f 92 (156)
..-|...|+...-
T Consensus 154 ~~T~~nLk~~g~~~~~ 169 (274)
T COG2503 154 DGTIENLKSEGLPQVL 169 (274)
T ss_pred chhHHHHHHcCccccc
Confidence 2334556666543
No 172
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0019 Score=46.52 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=36.8
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
..+.||-+++++++++++++++++|++.... +.++++.+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~f-I~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF-IYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchH-HHHHHHhhc
Confidence 3688999999999999999999999999998 799998876
No 173
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.08 E-value=0.002 Score=47.27 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH--HHHHHHHcCCC
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH 89 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~--~~~~l~~l~l~ 89 (156)
-..++.+++|+-|||.. +. ...||+.+++++|+.++.++=+|||-....- ....|.++|++
T Consensus 4 ~~~v~gvLlDlSGtLh~------e~----~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 4 GRAVKGVLLDLSGTLHI------ED----AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred ccccceEEEeccceEec------cc----ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 34568899999999997 33 3779999999999999999999998764431 24445566654
No 174
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.08 E-value=0.0027 Score=55.80 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM 100 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~ 100 (156)
....+++-.||+++.. . .-..+++|++.++|+.|++.|++++++||..... ++.+++.+|++.+|..+
T Consensus 629 g~~~v~va~~~~~~g~-~-----~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~~~~----- 696 (834)
T PRK10671 629 GATPVLLAVDGKAAAL-L-----AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVIAGV----- 696 (834)
T ss_pred CCeEEEEEECCEEEEE-E-----EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEEeCC-----
Confidence 3456777788887641 1 1122688999999999999999999999999888 79999999997654321
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 101 YTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
.|+....+++.++..++++
T Consensus 697 ------~p~~K~~~i~~l~~~~~~v 715 (834)
T PRK10671 697 ------LPDGKAEAIKRLQSQGRQV 715 (834)
T ss_pred ------CHHHHHHHHHHHhhcCCEE
Confidence 2444556777776655543
No 175
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.81 E-value=0.0052 Score=54.44 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=57.4
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC----------------CCCCCHHHH
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT----------------KDSSNASSS 111 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~----------------~~kp~p~~~ 111 (156)
+++|++.++++.|+++|+++.++||..... +..+.+.+|+...+..++.+.+.. ...+.|+.-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 689999999999999999999999999998 899999999987665443332221 124667777
Q ss_pred HHHHHHhCCCCc
Q 031610 112 ESTCAIFHFHPK 123 (156)
Q Consensus 112 ~~~~~~~~~~~~ 123 (156)
..+.+.++-...
T Consensus 607 ~~iv~~lq~~g~ 618 (884)
T TIGR01522 607 MKIVKALQKRGD 618 (884)
T ss_pred HHHHHHHHHCCC
Confidence 777777664443
No 176
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=96.76 E-value=0.011 Score=47.07 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcc-CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610 5 EKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l 83 (156)
--|.+.| ++|.. .....++|-||=|+||++ +|.......-++.-|-.|-++|++++|+|...... +.+.-
T Consensus 130 R~ILN~A-Qi~al~~~~~L~LvTFDgDvTLY~-------DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~ 200 (408)
T PF06437_consen 130 RHILNTA-QIMALAKNYGLKLVTFDGDVTLYE-------DGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYE 200 (408)
T ss_pred HHHHHHH-HHHHhcccCCceEEEEcCCccccc-------CCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHH
Confidence 3445444 34443 333889999999999997 33333344557776667778899999999776655 45544
Q ss_pred HH
Q 031610 84 HK 85 (156)
Q Consensus 84 ~~ 85 (156)
++
T Consensus 201 ~R 202 (408)
T PF06437_consen 201 ER 202 (408)
T ss_pred HH
Confidence 44
No 177
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=96.68 E-value=0.0045 Score=45.14 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=42.9
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC--CCCCCceEE
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG--IHSMFVPMV 96 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~--l~~~f~~~~ 96 (156)
-+++||.||||.. +.. ...|.+.+.|+.|++. ..++++-++.. .+..+.+| +...|++++
T Consensus 12 ~l~lfdvdgtLt~------~r~---~~~~e~~~~l~~lr~~-v~ig~VggsDl----~k~~eqlG~~Vl~~fDY~F 73 (252)
T KOG3189|consen 12 TLCLFDVDGTLTP------PRQ---KVTPEMLEFLQKLRKK-VTIGFVGGSDL----SKQQEQLGDNVLEEFDYVF 73 (252)
T ss_pred eEEEEecCCcccc------ccc---cCCHHHHHHHHHHhhh-eEEEEeecHHH----HHHHHHhchhHHhhhcccc
Confidence 3688999999997 333 6889999999999876 88888877663 44455554 333455544
No 178
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.008 Score=51.90 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=61.0
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTK 103 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~ 103 (156)
.+++-.||.+.....- . .++.|++.++++.|++.|+++.++||-.... ++.+.+++|++.++-.+
T Consensus 519 ~v~va~dg~~~g~i~~--~----D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~Ael-------- 583 (713)
T COG2217 519 VVFVAVDGKLVGVIAL--A----DELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVRAEL-------- 583 (713)
T ss_pred EEEEEECCEEEEEEEE--e----CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhheccC--------
Confidence 6888999976642111 1 1688999999999999999999999999888 89999999997776432
Q ss_pred CCCCHHHHHHHHHHhC
Q 031610 104 DSSNASSSESTCAIFH 119 (156)
Q Consensus 104 ~kp~p~~~~~~~~~~~ 119 (156)
.|+.-....++++
T Consensus 584 ---lPedK~~~V~~l~ 596 (713)
T COG2217 584 ---LPEDKAEIVRELQ 596 (713)
T ss_pred ---CcHHHHHHHHHHH
Confidence 4556666666665
No 179
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.61 E-value=0.005 Score=47.96 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=37.2
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC----CCeEEEEcCCCC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA 75 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~----G~~v~i~T~~~~ 75 (156)
.=.++||+||+|+.+ + ++.|++.++|++|.++ .++++++||+..
T Consensus 35 ~fgfafDIDGVL~RG-------~---~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg 82 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFRG-------H---RPIPGALKALRRLVDNQGQLKIPFVFLTNGGG 82 (389)
T ss_pred ceeEEEecccEEEec-------C---CCCcchHHHHHHHHhcCCCeeccEEEEeCCCC
Confidence 346999999999973 2 6889999999999888 799999997753
No 180
>PLN02645 phosphoglycolate phosphatase
Probab=96.57 E-value=0.0012 Score=51.51 Aligned_cols=77 Identities=10% Similarity=-0.022 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccC---CCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYT---KDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~---~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
...+...+++++-..+|+||.+........+...|...+|..+....... ..||+|.++..+++.+++.++++++|+
T Consensus 175 l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VG 254 (311)
T PLN02645 175 IQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVG 254 (311)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEc
Confidence 44456666543336788999886320112223345555565554333322 259999999999999999999876554
No 181
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.37 E-value=0.05 Score=41.31 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH---HHcCCCC--C-------CceE----------EEec--ccCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL---HKLGIHS--M-------FVPM----------VVIY--MYTK 103 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l---~~l~l~~--~-------f~~~----------~~~~--~~~~ 103 (156)
.+-+.+.+.++.|+++|+++..+|.++... ....+ .++|++- . +... +..+ -...
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~-~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNM-EDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhh-HHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 355678889999999999999999998654 34444 4455531 1 1000 0000 0122
Q ss_pred CCCCHHHHHHHHHHhCCCCcCceeEeeehhh---hHHHhhcccc
Q 031610 104 DSSNASSSESTCAIFHFHPKRSCSIFMFQQV---MIEMFQNRHS 144 (156)
Q Consensus 104 ~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~ 144 (156)
.-++..++..++.+.+..|+. |+|.++. ...|-.++++
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~---IIfIDD~~~nl~sv~~a~k~ 200 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKK---IIFIDDNKENLKSVEKACKK 200 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCe---EEEEeCCHHHHHHHHHHHhh
Confidence 355668999999999998884 6667655 4445555555
No 182
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.05 E-value=0.059 Score=46.99 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=50.7
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
....+++=.||+++.... -..+++|++.++|+.|++.|++++++||..... +..+.+.+|+.
T Consensus 547 g~~~v~va~~~~~~g~i~------l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~ 608 (741)
T PRK11033 547 GKTVVLVLRNDDVLGLIA------LQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGID 608 (741)
T ss_pred CCEEEEEEECCEEEEEEE------EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 346677778888764211 112689999999999999999999999999888 89999999996
No 183
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.03 E-value=0.041 Score=47.43 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=60.9
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM 100 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~ 100 (156)
..+.+++-.|++++.. . .-..++.|++.++++.|++.|+++..+||-.... +..+.+++|++.+|
T Consensus 424 G~~~l~va~~~~~lG~-i-----~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~-------- 488 (679)
T PRK01122 424 GGTPLVVAEDNRVLGV-I-----YLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL-------- 488 (679)
T ss_pred CCcEEEEEECCeEEEE-E-----EEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE--------
Confidence 3456777678887642 1 1112688999999999999999999999999998 89999999997543
Q ss_pred cCCCCCCHHHHHHHHHHhC
Q 031610 101 YTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~ 119 (156)
..-.|+.-..+.+.++
T Consensus 489 ---A~~~PedK~~iV~~lQ 504 (679)
T PRK01122 489 ---AEATPEDKLALIRQEQ 504 (679)
T ss_pred ---ccCCHHHHHHHHHHHH
Confidence 2336666677777664
No 184
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.01 E-value=0.04 Score=47.48 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=59.1
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM 100 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~ 100 (156)
..+.+++-.|++++... .-..++.|++.+++++|++.|+++.++||..... +..+.+++|++.++.
T Consensus 425 G~r~l~va~~~~~lG~i------~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~a------- 490 (675)
T TIGR01497 425 GGTPLVVCEDNRIYGVI------YLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFIA------- 490 (675)
T ss_pred CCeEEEEEECCEEEEEE------EecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEEc-------
Confidence 34567776778876421 1112688999999999999999999999999888 899999999975442
Q ss_pred cCCCCCCHHHHHHHHHHhC
Q 031610 101 YTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~ 119 (156)
.-.|+.-..+.+.+.
T Consensus 491 ----~~~PedK~~~v~~lq 505 (675)
T TIGR01497 491 ----EATPEDKIALIRQEQ 505 (675)
T ss_pred ----CCCHHHHHHHHHHHH
Confidence 234555555555553
No 185
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.70 E-value=0.054 Score=46.67 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=50.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 119 (156)
++.|++.+++++|++.|+++..+||..... +..+.+++|++.+| ..-.|+.-..+.+.++
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~-----------A~~~PedK~~iV~~lQ 500 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV-----------AECKPEDKINVIREEQ 500 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE-----------cCCCHHHHHHHHHHHH
Confidence 688999999999999999999999999998 89999999997643 2346777777777765
No 186
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=95.31 E-value=0.11 Score=35.66 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=42.7
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc--CCCChhHHHHHHHHcCCCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T--~~~~~~~~~~~l~~l~l~~~ 91 (156)
+-++||||.++..+ +. -.-...+.++++.+.|.++.|+| +.++.. ++++...++-.-|
T Consensus 45 iAildL~G~~l~l~----S~-----R~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~ly 104 (138)
T PF04312_consen 45 IAILDLDGELLDLK----SS-----RNMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVLY 104 (138)
T ss_pred EEEEecCCcEEEEE----ee-----cCCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCccc
Confidence 35789999999731 11 22347789999999999999999 556666 6888777765444
No 187
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=95.13 E-value=0.021 Score=40.58 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=36.1
Q ss_pred CCcHH----HHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 50 ~~~~~----~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
+|++. ++|+.++++|++++|+|+++... +..+++.+++....
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~~~ 132 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDDDN 132 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSEGG
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceE
Confidence 46666 99999999999999999998776 79999999988743
No 188
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=95.08 E-value=0.035 Score=45.57 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=36.6
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---------CCCCCCceEEEe
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVVI 98 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---------~l~~~f~~~~~~ 98 (156)
...|.+...|++|+++|.+++++||++... +...+..+ .+..+|+.+++.
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlFDvVIv~ 241 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLFDVVIVD 241 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCECEEEES
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhheeEEEEc
Confidence 456789999999999999999999999888 68887754 355688887753
No 189
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=94.98 E-value=0.033 Score=47.21 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=47.3
Q ss_pred CCCceEEEecCCcccccccccc--ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh--hHHHHHHHHcCCCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--DIAKTFLHKLGIHS 90 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~--~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~--~~~~~~l~~l~l~~ 90 (156)
+.-|+|+.|+|||+.-..+--+ +.-....-..|+..+..+.++.||++..||+|+.- .+.+.+|..+.-++
T Consensus 528 Wn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG 602 (738)
T KOG2116|consen 528 WNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG 602 (738)
T ss_pred cCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC
Confidence 3457899999999986433211 11111124458999999999999999999998742 22356666655444
No 190
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=94.92 E-value=0.15 Score=34.85 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=60.4
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCC
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKD 104 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~ 104 (156)
..-++++|+.. .+ .+++.+.+.|+.|++. +.++|+|+....+ ....++..|++-.. +. .
T Consensus 17 ~~~~v~~tiat-------gG---klf~ev~e~iqeL~d~-V~i~IASgDr~gs-l~~lae~~gi~~~r--v~-------a 75 (152)
T COG4087 17 KAGKVLYTIAT-------GG---KLFSEVSETIQELHDM-VDIYIASGDRKGS-LVQLAEFVGIPVER--VF-------A 75 (152)
T ss_pred ecceEEEEEcc-------Cc---EEcHhhHHHHHHHHHh-heEEEecCCcchH-HHHHHHHcCCceee--ee-------c
Confidence 45577788774 34 7999999999999999 9999999888777 68888888864322 22 2
Q ss_pred CCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 105 SSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 105 kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
..++++-..+++.++-..+.+.+|+
T Consensus 76 ~a~~e~K~~ii~eLkk~~~k~vmVG 100 (152)
T COG4087 76 GADPEMKAKIIRELKKRYEKVVMVG 100 (152)
T ss_pred ccCHHHHHHHHHHhcCCCcEEEEec
Confidence 4467777778887765445554443
No 191
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=94.73 E-value=0.0076 Score=45.51 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=46.5
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC---CCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l---~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
.++...+++..++ +|.+ .++||..... -...-...+. ...+....+.+.....||+|.++..+++.+++.++++
T Consensus 122 ~y~~l~~a~~~l~-~g~~-~i~tN~D~~~-~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~ 198 (249)
T TIGR01457 122 DYEKFATATLAIR-KGAH-FIGTNGDLAI-PTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREET 198 (249)
T ss_pred CHHHHHHHHHHHH-CCCe-EEEECCCCCC-CCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccE
Confidence 4455667777774 5777 7788877533 1110000010 0112222233344557999999999999999999887
Q ss_pred eeEe
Q 031610 126 CSIF 129 (156)
Q Consensus 126 ~~v~ 129 (156)
++|+
T Consensus 199 ~~VG 202 (249)
T TIGR01457 199 LMVG 202 (249)
T ss_pred EEEC
Confidence 6544
No 192
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.034 Score=43.01 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC--CCc-e---EEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFV-P---MVVIYMYTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~--~f~-~---~~~~~~~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
|+....+++.|++-+. ++++||+.... .......+.+ .+. . .......-..||++.++..+.+++++.|+
T Consensus 167 y~KL~kA~~yLqnP~c-lflatn~D~~~---p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~ps 242 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGC-LFLATNRDATT---PPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPS 242 (306)
T ss_pred HHHHHHHHHHhCCCCc-EEEeccCcccc---CCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcc
Confidence 4556679999987765 45789887421 1111111111 111 1 11122334469999999999999999999
Q ss_pred CceeEee
Q 031610 124 RSCSIFM 130 (156)
Q Consensus 124 ~~~~v~~ 130 (156)
++++|+-
T Consensus 243 Rt~mvGD 249 (306)
T KOG2882|consen 243 RTCMVGD 249 (306)
T ss_pred eEEEEcc
Confidence 9998863
No 193
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=94.47 E-value=0.26 Score=44.08 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=38.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++.|++.++|+.|+++|+++.++||..... +....+.+|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCC
Confidence 589999999999999999999999999888 799999999854
No 194
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=94.07 E-value=0.074 Score=32.33 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 103 KDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 103 ~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
..||+|.++..+++.++++++++++|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VG 28 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVG 28 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEE
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEc
Confidence 369999999999999999999987665
No 195
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=93.90 E-value=0.19 Score=44.66 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=38.7
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++.|++.++++.|+++|+++.++||..... +..+.+++|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999888 89999999996
No 196
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=93.81 E-value=0.2 Score=44.74 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++.|++.++++.|+++|+++.++||-.... +..+.+++|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999888 89999999995
No 197
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=93.79 E-value=0.22 Score=44.43 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=38.7
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++.|++.++++.|+++|+++.++||-.... +..+.+++|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999888 89999999995
No 198
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=93.78 E-value=0.12 Score=45.29 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=39.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++.|++.++++.|+++|+++.++||..... +..+.+++|+..
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence 688999999999999999999999999988 899999999965
No 199
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=93.77 E-value=0.79 Score=38.28 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCC
Q 031610 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM 91 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~ 91 (156)
+++.++++|.+ +|+|+.+... ++.+.++ +|++..
T Consensus 115 a~~~~~~~g~~-vvVSASp~~~-Vepfa~~~LGid~V 149 (497)
T PLN02177 115 TWRVFNSFGKR-YIITASPRIM-VEPFVKTFLGADKV 149 (497)
T ss_pred HHHHHHhCCCE-EEEECCcHHH-HHHHHHHcCCCCEE
Confidence 44556677865 8999999776 7999976 787753
No 200
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=93.71 E-value=0.094 Score=47.26 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=38.4
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++.|++.++++.|+++|+++.++||+.... +..+.+.+|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999998 79999999984
No 201
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=93.20 E-value=0.46 Score=42.71 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=39.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++.|++.++++.|+++|+++.++||..... +..+.+.+|+..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~~ 620 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGILT 620 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCC
Confidence 688999999999999999999999999998 899999999864
No 202
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.26 Score=38.70 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=41.8
Q ss_pred EEEecCCcccccccccc---------ccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChh
Q 031610 25 VVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD 77 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~---------~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~ 77 (156)
++.|||.|+..+++... .+.....++||+-...+.|.+.| ..++-+||++...
T Consensus 164 iISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~ 226 (373)
T COG4850 164 IISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL 226 (373)
T ss_pred eeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence 88999999988776532 11122368999999999999888 8999999999764
No 203
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.03 E-value=0.65 Score=41.14 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=52.9
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
..-.+.+=+||+|..... -...+.|++..++..|++.|++++.+||-.... ++...+++|++..+
T Consensus 702 g~tvv~v~vn~~l~gv~~------l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~ 766 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVFA------LEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVY 766 (951)
T ss_pred CceEEEEEECCEEEEEEE------eccccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEE
Confidence 456788899999986322 122688999999999999999999999999888 89999999955443
No 204
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.46 E-value=0.068 Score=38.52 Aligned_cols=17 Identities=24% Similarity=-0.013 Sum_probs=14.0
Q ss_pred CceEEEecCCccccccc
Q 031610 22 PRLVVFDLDYTLWPFYC 38 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~ 38 (156)
+++|+||.||||++...
T Consensus 1 i~~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKM 17 (215)
T ss_dssp ESEEEEECCTTTBESHH
T ss_pred CeEEEEecCCCcccCeE
Confidence 47899999999998533
No 205
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=92.46 E-value=0.59 Score=31.80 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYM 100 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~ 100 (156)
.++++.||+|-|+|+.|++++-+....+... .+.+.|..+++..--. . ...-++.+|+. .++.+
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfkP~k~-------~~g~~g~e~~fY~Di~--r-IL~dLk~~GVt----l~~AS-- 67 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFKPFKC-------ECGSKGEEMIFYDDIR--R-ILVDLKKLGVT----LIHAS-- 67 (144)
T ss_pred CCceeEEeccceeeeEEEEeccccccccccc-------CcccCcceeeeccchh--H-HHHHHHhcCcE----EEEec--
Confidence 5689999999999999998776654332222 2337788887764322 2 24445666653 33333
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCc
Q 031610 101 YTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
..+.|+...++++.+.+.+-
T Consensus 68 ---Rt~ap~iA~q~L~~fkvk~~ 87 (144)
T KOG4549|consen 68 ---RTMAPQIASQGLETFKVKQT 87 (144)
T ss_pred ---CCCCHHHHHHHHHHhccCcc
Confidence 47889999999999987543
No 206
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=92.21 E-value=0.26 Score=44.74 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=38.9
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++.|++.++++.|+++|+++.++||....+ +..+.+++|+..
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii~ 697 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIVN 697 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence 588999999999999999999999999998 899999999853
No 207
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=92.17 E-value=0.3 Score=36.77 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCCh-h---HHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCc
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAP-D---IAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~-~---~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
++++.+.++.++..+..+.++++.+.. . ....+.+.+++...+......+-....-.++..+..+++.+++.++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 456667777777777777777765431 1 122333344432110000001111122346678999999999999887
Q ss_pred eeEeeehhhhHHHhhcc
Q 031610 126 CSIFMFQQVMIEMFQNR 142 (156)
Q Consensus 126 ~~v~~~~~~~~~~~~~~ 142 (156)
.+++ -+.+++.|+++-
T Consensus 219 i~~G-D~~NDi~m~~~a 234 (272)
T PRK10530 219 VAFG-DNFNDISMLEAA 234 (272)
T ss_pred EEeC-CChhhHHHHHhc
Confidence 6554 566788888643
No 208
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=92.11 E-value=0.36 Score=34.86 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChhHHHH----HHHHcCCCCCCceEEEec
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPDIAKT----FLHKLGIHSMFVPMVVIY 99 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~----~l~~l~l~~~f~~~~~~~ 99 (156)
-++++|..-+++|=.++++|||.+-. ... +.+.+.+.......+.++
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk-~d~vsk~Lak~F~i~~m~pv~f~Gd 168 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGK-TDTVSKTLAKNFHITNMNPVIFAGD 168 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCc-ccccchhHHhhcccCCCcceeeccC
Confidence 35557777778999999999998643 233 334566666655555443
No 209
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=92.03 E-value=0.27 Score=44.71 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=39.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++.|++.++++.|+++|+++.++||....+ +..+.+.+|+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~~ 687 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGIIP 687 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence 588999999999999999999999999998 899999999853
No 210
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=91.97 E-value=1.2 Score=28.54 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHH
Q 031610 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~ 81 (156)
.++++.....+.+.. +..+.+++|+-++=. | +.+ ........+.++++|.++.++.-++ . +.+
T Consensus 22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD------ssg-----i~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~ 85 (106)
T TIGR02886 22 TAERVRRKIDDAIER--RPIKHLILNLKNVTFMD------SSG-----LGVILGRYKKIKNEGGEVIVCNVSP--A-VKR 85 (106)
T ss_pred hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEec------chH-----HHHHHHHHHHHHHcCCEEEEEeCCH--H-HHH
Confidence 456666555555432 246789999998843 3 221 1224457788999999998875433 4 688
Q ss_pred HHHHcCCCCCC
Q 031610 82 FLHKLGIHSMF 92 (156)
Q Consensus 82 ~l~~l~l~~~f 92 (156)
.++..|+...+
T Consensus 86 ~l~~~gl~~~~ 96 (106)
T TIGR02886 86 LFELSGLFKII 96 (106)
T ss_pred HHHHhCCceEE
Confidence 89998987766
No 211
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=91.92 E-value=0.94 Score=33.99 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=63.3
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC----C----CCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG----I----HSMFVPMVVIYMYTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~----l----~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 119 (156)
.+++.+..++++.++.|++++|.|+++.. +++++-... + .+||+--++ .|.....|..+.+.++
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~--AqKllfg~s~~gdl~~y~~gyfDt~iG------~K~e~~sy~~I~~~Ig 194 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVA--AQKLLFGYSDAGDLRKYISGYFDTTIG------LKVESQSYKKIGHLIG 194 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHH--HHHHHHcccCcchHHHHhhhhhhcccc------ceehhHHHHHHHHHhC
Confidence 58999999999999999999999999855 466664432 2 223433222 5777889999999999
Q ss_pred CCCcCceeEeeehhhhHHHhhccccc
Q 031610 120 FHPKRSCSIFMFQQVMIEMFQNRHSM 145 (156)
Q Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (156)
.++++ +++.||.-.+...++..+
T Consensus 195 ~s~~e---iLfLTd~~~Ea~aa~~aG 217 (254)
T KOG2630|consen 195 KSPRE---ILFLTDVPREAAAARKAG 217 (254)
T ss_pred CChhh---eEEeccChHHHHHHHhcc
Confidence 99854 677787766666555444
No 212
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.35 Score=42.54 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=41.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
.+++++++++++.|+++|+++..+||-...+ +..+.+++|+...-+
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~~e 628 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSEDE 628 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcCCc
Confidence 3689999999999999999999999999998 899999999765544
No 213
>PRK10444 UMP phosphatase; Provisional
Probab=91.75 E-value=0.052 Score=41.03 Aligned_cols=29 Identities=3% Similarity=0.010 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcCceeEe
Q 031610 101 YTKDSSNASSSESTCAIFHFHPKRSCSIF 129 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~ 129 (156)
....||+|.++..+++.+++.++++++|+
T Consensus 170 ~~~gKP~~~~~~~~~~~~~~~~~~~v~IG 198 (248)
T PRK10444 170 FYVGKPSPWIIRAALNKMQAHSEETVIVG 198 (248)
T ss_pred cccCCCCHHHHHHHHHHcCCCcccEEEEC
Confidence 33469999999999999999999877654
No 214
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=91.53 E-value=0.074 Score=40.58 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCceEEEecCCcccccc--cccc--------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610 20 NLPRLVVFDLDYTLWPFY--CECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~--~~~~--------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l 83 (156)
...|.+++|||+||+... .... ...-...-+|++.++|.++.+- +.+++.|+..... +.+++
T Consensus 87 ~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~ 164 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLL 164 (262)
T ss_pred CCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHH
Confidence 356889999999998654 2210 1111223578999999999765 8999999999888 89999
Q ss_pred HHcCC
Q 031610 84 HKLGI 88 (156)
Q Consensus 84 ~~l~l 88 (156)
..+.-
T Consensus 165 D~LD~ 169 (262)
T KOG1605|consen 165 DILDP 169 (262)
T ss_pred HHccC
Confidence 98876
No 215
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=91.50 E-value=0.75 Score=40.65 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=41.0
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
.+..||++++++.|+++|+.+--+||....+ ++.+..+.|+...=.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T-AkAIA~eCGILt~~~ 691 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINT-AKAIARECGILTPGG 691 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH-HHHHHHHcccccCCC
Confidence 4689999999999999999999999999998 899999999865443
No 216
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=91.39 E-value=0.11 Score=36.84 Aligned_cols=13 Identities=46% Similarity=0.452 Sum_probs=11.4
Q ss_pred EEEecCCcccccc
Q 031610 25 VVFDLDYTLWPFY 37 (156)
Q Consensus 25 i~fDlDGTL~~~~ 37 (156)
++||+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999864
No 217
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.29 E-value=0.4 Score=38.72 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH---cCCCCCCceEEEe
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHK---LGIHSMFVPMVVI 98 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~---l~l~~~f~~~~~~ 98 (156)
....|..+++.|.+..+.||..... ....+.. .++..+|+.+++.
T Consensus 203 ~v~~l~~~r~sGKk~fl~Tns~~~y-td~~mt~~~~~dW~~yfd~v~~~ 250 (424)
T KOG2469|consen 203 IVPLLSMLRDSGKKTFLHTNSDWDY-TDIFMAFHYGFDWETYFDLVETR 250 (424)
T ss_pred cccchHHHHhhccceEEeeccccch-hhHHHHHHhCCCcceeEEEEEEe
Confidence 3348899999999999999998776 4555443 2566678776643
No 218
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=90.81 E-value=1.8 Score=27.90 Aligned_cols=71 Identities=24% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~ 82 (156)
++++..+..+.+.. +..+.+++|+-|+=+ | +.+ .....++.+.++++|.++.++--+ +. +.+.
T Consensus 25 a~~~~~~l~~~~~~--~~~~~vvlDls~v~~iD------ssg-----~~~l~~~~~~~~~~g~~l~l~g~~--~~-v~~~ 88 (109)
T cd07041 25 AEQLQERLLEAISR--RRARGVIIDLTGVPVID------SAV-----ARHLLRLARALRLLGARTILTGIR--PE-VAQT 88 (109)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCCCchhc------HHH-----HHHHHHHHHHHHHcCCeEEEEeCC--HH-HHHH
Confidence 45555444444432 255789999988743 4 222 123556778888999999988444 44 6888
Q ss_pred HHHcCCCC
Q 031610 83 LHKLGIHS 90 (156)
Q Consensus 83 l~~l~l~~ 90 (156)
++..|++.
T Consensus 89 l~~~gl~~ 96 (109)
T cd07041 89 LVELGIDL 96 (109)
T ss_pred HHHhCCCh
Confidence 99988876
No 219
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.34 E-value=0.58 Score=41.95 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=40.4
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
++.++++++++.|+++|+++..+||-...+ +..+.+++|+..--
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~~ 590 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAEA 590 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCCC
Confidence 789999999999999999999999999998 89999999976554
No 220
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=90.18 E-value=0.86 Score=41.33 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=40.8
Q ss_pred EecCCccccccccccccCCCcccCCcHHHHHHHHH----HCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCceEEE
Q 031610 27 FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMVV 97 (156)
Q Consensus 27 fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~----~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~~~~ 97 (156)
.|+|+| .+ ..+.+.+++++++ +..+-++++||++... +..++...++.. .|+.++|
T Consensus 777 ~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp~~~PD~lI~ 837 (1050)
T TIGR02468 777 VDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLNPTDFDALIC 837 (1050)
T ss_pred eccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCCCCCCCEEEe
Confidence 799999 32 2244556677775 3338899999999998 799999998863 6666654
No 221
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=89.69 E-value=0.33 Score=39.67 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.7
Q ss_pred CCCceEEEecCCcccccccccc---ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~---~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
+..+.|++|||||+.-+...-+ --++ ..-.-|+..+-...-+.||++.-.|+|+.
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGk-dwth~gVAkLYtdI~rNGYkI~YltsR~~ 430 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVKQMIGK-DWTHNGVAKLYTDIDRNGYKIKYLTSRSY 430 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHHHHhcc-chhhcchhhhhhhhccCceEEEEEecccc
Confidence 3457899999999986433211 0011 12345677777777789999999998874
No 222
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=89.47 E-value=0.64 Score=30.41 Aligned_cols=76 Identities=14% Similarity=0.330 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHhccCC------CCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 3 DLEKVKNEALEIIGQFE------NLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~~~------~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.++++............ ..++.+++|+.+.-. | +. -.....++.+.++++|.++.++.-+
T Consensus 23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD------ss-----gi~~L~~~~~~~~~~g~~~~l~~~~-- 89 (117)
T PF01740_consen 23 NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFID------SS-----GIQALVDIIKELRRRGVQLVLVGLN-- 89 (117)
T ss_dssp HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEES------HH-----HHHHHHHHHHHHHHTTCEEEEESHH--
T ss_pred HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCC------HH-----HHHHHHHHHHHHHHCCCEEEEEECC--
Confidence 45677766666666654 457899999988732 3 11 2234567888899999999988543
Q ss_pred hhHHHHHHHHcCCCCCC
Q 031610 76 PDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 76 ~~~~~~~l~~l~l~~~f 92 (156)
+. +...+...|+...+
T Consensus 90 ~~-v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 90 PD-VRRILERSGLIDFI 105 (117)
T ss_dssp HH-HHHHHHHTTGHHHS
T ss_pred HH-HHHHHHHcCCChhc
Confidence 34 68888998887666
No 223
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=89.45 E-value=0.3 Score=38.87 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=36.5
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc---CCCCCCceEEE
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVV 97 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l---~l~~~f~~~~~ 97 (156)
--|.+.+.|++|+++|.+++++||++.+. +.+-++.+ .+...|+.++.
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysF-Vd~GM~flvG~~WRdlFDVVIv 291 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSF-VDKGMRFLVGDDWRDLFDVVIV 291 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhh-hhcCceeeeCccHHhhhheeEE
Confidence 34577889999999999999999999888 56655543 34456777654
No 224
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=89.21 E-value=0.61 Score=38.79 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHHCCCeEEEEcCCCChhHHHHHHHH-cCCCCC
Q 031610 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM 91 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~-l~l~~~ 91 (156)
.++..+++| +++++|..+... ++..+++ +|.+..
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~V 135 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADEV 135 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCceE
Confidence 566667788 999999999887 7999998 887654
No 225
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=89.16 E-value=3.6 Score=34.22 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+..+.+++=.+++++..-. -..++.|++.++++.|+++|+++.++||..... +....+.+|+
T Consensus 325 ~g~~~~~~a~~~~~~g~i~------l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi 386 (499)
T TIGR01494 325 SGLRVLAVASKETLLGLLG------LEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGI 386 (499)
T ss_pred CCCEEEEEEECCeEEEEEE------ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCc
Confidence 3445566667777664211 112688999999999999999999999999888 7999899986
No 226
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=88.61 E-value=3.7 Score=32.01 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=30.0
Q ss_pred cccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHH
Q 031610 47 PYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l 83 (156)
++++|..-+.++.+++.| ++++++||++.+. +...+
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgslpd-v~~~L 127 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPD-VLEEL 127 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCChHH-HHHHh
Confidence 479999999999999999 7999999999655 34433
No 227
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=88.33 E-value=0.68 Score=42.15 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=38.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
++.|++.++++.|+++|+++.++||-...+ +..+....|+-..
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~T-A~~IA~~~~ii~~ 673 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVET-AINIGYSCRLLSR 673 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCCCCC
Confidence 688999999999999999999999999888 7999888887543
No 228
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=87.62 E-value=4.1 Score=25.85 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHH
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK 80 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~ 80 (156)
+.++++.....+.... +..+.+++|+-++=+ | +. -.....++.+.++++|.++.++.-+ .. +.
T Consensus 21 ~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD------ss-----gl~~L~~l~~~~~~~g~~l~l~~~~--~~-v~ 84 (100)
T cd06844 21 HSVEQFKEELLHNITN--VAGKTIVIDISALEFMD------SS-----GTGVLLERSRLAEAVGGQFVLTGIS--PA-VR 84 (100)
T ss_pred hhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEc------HH-----HHHHHHHHHHHHHHcCCEEEEECCC--HH-HH
Confidence 3456666555444432 346789999988743 3 22 2233556778889999999888543 44 68
Q ss_pred HHHHHcCCCC
Q 031610 81 TFLHKLGIHS 90 (156)
Q Consensus 81 ~~l~~l~l~~ 90 (156)
..++..|+..
T Consensus 85 ~~l~~~gl~~ 94 (100)
T cd06844 85 ITLTESGLDK 94 (100)
T ss_pred HHHHHhCchh
Confidence 8888888765
No 229
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=87.48 E-value=5 Score=24.86 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=39.3
Q ss_pred CceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 22 PRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 22 ~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
.+.+++|+.++=. | + ....-..++.+.++++|..+.++.-+ .. +.+.++..|+...|.
T Consensus 38 ~~~viid~~~v~~iD------s-----~g~~~L~~l~~~~~~~g~~v~i~~~~--~~-~~~~l~~~gl~~~~~ 96 (99)
T cd07043 38 PRRLVLDLSGVTFID------S-----SGLGVLLGAYKRARAAGGRLVLVNVS--PA-VRRVLELTGLDRLFP 96 (99)
T ss_pred CCEEEEECCCCCEEc------c-----hhHHHHHHHHHHHHHcCCeEEEEcCC--HH-HHHHHHHhCcceeee
Confidence 5789999988732 3 1 12233556778888899887766433 45 689999999876653
No 230
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=86.65 E-value=6.2 Score=25.11 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=40.5
Q ss_pred CCCceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 20 NLPRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
+..+.+++|+.+.=. | +.+ ..-..++.++++++|..+.++.-+ +. ....++..|+...+.
T Consensus 41 ~~~~~vvidls~v~~iD------ssg-----l~~L~~~~~~~~~~~~~~~l~~~~--~~-~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 41 TGPRPIVLDLEDLEFMD------SSG-----LGVLLGRYKQVRRVGGQLVLVSVS--PR-VARLLDITGLLRIIP 101 (108)
T ss_pred cCCCeEEEECCCCeEEc------ccc-----HHHHHHHHHHHHhcCCEEEEEeCC--HH-HHHHHHHhChhheec
Confidence 356789999988732 3 211 122445677788899988877543 34 588899999877654
No 231
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=85.51 E-value=2.3 Score=37.73 Aligned_cols=82 Identities=20% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccCCCCCceEEEecCCcccccc--ccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHH
Q 031610 5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFY--CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82 (156)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~--~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~ 82 (156)
+||++-+.--+.+. .-++-..||+|---.+.+ +-..--.-..++.+.+.+++..++++|++++.+|+.-+.+ +...
T Consensus 546 erVlgF~~~~l~~~-~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiT-AkAi 623 (1019)
T KOG0203|consen 546 ERVLGFCDLELPDE-KFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAI 623 (1019)
T ss_pred hHHHHHHHHhcchh-cCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccch-hhhh
Confidence 46765544444433 445667888876654421 1111111223577888899999999999999999998888 7888
Q ss_pred HHHcCC
Q 031610 83 LHKLGI 88 (156)
Q Consensus 83 l~~l~l 88 (156)
.+..|+
T Consensus 624 A~~vgI 629 (1019)
T KOG0203|consen 624 AKSVGI 629 (1019)
T ss_pred hhheee
Confidence 887774
No 232
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=82.56 E-value=5.7 Score=30.55 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChh-----------HHHHHHHHc-CCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPD-----------IAKTFLHKL-GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~-----------~~~~~l~~l-~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 119 (156)
...+++..+++ | --+||||..... .....++.. |... .-..||++.++..+++.++
T Consensus 137 ~l~~a~~~i~~-g-~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~----------~~~GKP~~~i~~~al~~~~ 204 (269)
T COG0647 137 KLAEALLAIAA-G-APFIATNPDLTVPTERGLRPGAGAIAALLEQATGREP----------TVIGKPSPAIYEAALEKLG 204 (269)
T ss_pred HHHHHHHHHHc-C-CcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCcc----------cccCCCCHHHHHHHHHHhC
Confidence 35567777655 4 666799887432 011222221 2211 1225999999999999999
Q ss_pred CCCcCceeEe
Q 031610 120 FHPKRSCSIF 129 (156)
Q Consensus 120 ~~~~~~~~v~ 129 (156)
..++++++|+
T Consensus 205 ~~~~~~~mVG 214 (269)
T COG0647 205 LDRSEVLMVG 214 (269)
T ss_pred CCcccEEEEc
Confidence 9999887765
No 233
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=82.41 E-value=5.7 Score=33.55 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=48.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 119 (156)
.+-||.+|-+..||+-|++-+-|||.++-+ +..+..+-|++++.. ...|+.-..+.++.+
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~T-Aa~IA~EAGVDdfiA-----------eatPEdK~~~I~~eQ 506 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFIA-----------EATPEDKLALIRQEQ 506 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHH-HHHHHHHhCchhhhh-----------cCChHHHHHHHHHHH
Confidence 366999999999999999999999999888 788889999988763 335566666666543
No 234
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=82.24 E-value=0.64 Score=34.72 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCcCc
Q 031610 103 KDSSNASSSESTCAIFHFHPKRS 125 (156)
Q Consensus 103 ~~kp~p~~~~~~~~~~~~~~~~~ 125 (156)
..||+|.++..+++++++.+.++
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~ 208 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERR 208 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccc
Confidence 56999999999999999988876
No 235
>PLN03190 aminophospholipid translocase; Provisional
Probab=82.20 E-value=2.5 Score=39.07 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=38.0
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
++.+++.++++.|+++|+++.++||....+ +..+....++-..
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~t-Ai~IA~s~~Ll~~ 768 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQET-AISIGYSSKLLTN 768 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCCCC
Confidence 688999999999999999999999999888 7888888877443
No 236
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=81.70 E-value=5.7 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=27.1
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.++|...++++.+++.|+.++|.||+....
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e 171 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTRPD 171 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 3577889999999999999999999997654
No 237
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.22 E-value=6.5 Score=28.62 Aligned_cols=34 Identities=3% Similarity=-0.042 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610 107 NASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 107 ~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (156)
++..+..+++.+|++++++..++ -+.+++.|++.
T Consensus 180 Kg~al~~l~~~lgi~~~~vi~~G-D~~NDi~ml~~ 213 (221)
T TIGR02463 180 KGKAANWLKATYNQPDVKTLGLG-DGPNDLPLLEV 213 (221)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEC-CCHHHHHHHHh
Confidence 55578999999999998876554 56667777753
No 238
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=80.77 E-value=12 Score=25.14 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=33.9
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.+||=+||+-+=.... ........+|-..+.++.+.++|.++.+|.-..
T Consensus 37 ~iF~t~dG~~l~~K~~--~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 37 TIFFTMDGVTLVKKKV--AEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred EEEEEeccceeeeecc--hhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3888999985421110 112222466889999999999999999997544
No 239
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=80.63 E-value=8.4 Score=32.68 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHhc------cCCCCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 2 GDLEKVKNEALEIIG------QFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~------~~~~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
|.+++++.+..+... ...+..+.+++|+.++- +| . .-.....+..++++++|.++.++--+
T Consensus 468 ~na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iD------s-----Sg~~~L~~l~~~l~~~g~~l~l~~~~- 535 (563)
T TIGR00815 468 ANAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLD------T-----SGIHALEELRKELKARGIQLLLANPN- 535 (563)
T ss_pred CcHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcch------H-----HHHHHHHHHHHHHHHcCCEEEEecCC-
Confidence 456677766555554 23334689999998763 33 1 12233566778889999999888543
Q ss_pred ChhHHHHHHHHcCCCCCCc
Q 031610 75 APDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 75 ~~~~~~~~l~~l~l~~~f~ 93 (156)
+. +++.+++.|+...+.
T Consensus 536 -~~-v~~~l~~~gl~~~~~ 552 (563)
T TIGR00815 536 -KA-VRSTLKRGGLVELIG 552 (563)
T ss_pred -hH-HHHHHHHCCchhhcC
Confidence 44 688899988876653
No 240
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=80.62 E-value=7 Score=33.72 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=62.3
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC-CCce-EEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVP-MVVIYMYTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~-~f~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
..++.|++.++|+.+.+. +.+.|+|-+.+.+ +..+++-+.... +|.. +++.++....| ......+.|.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~Y-A~~i~~liDP~~~lF~dRIisrde~~~~k--------t~dL~~~~p~ 268 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDY-ALEIAKLIDPEGKYFGDRIISRDESPFFK--------TLDLVLLFPC 268 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHH-HHHHHHHhCCCCccccceEEEecCCCccc--------ccccccCCCC
Confidence 346899999999999876 9999999999888 799998887665 4544 55655533222 2233334455
Q ss_pred CceeEeeehhh--hHHHhh-cccccccccccccc
Q 031610 124 RSCSIFMFQQV--MIEMFQ-NRHSMLDLNSSKNT 154 (156)
Q Consensus 124 ~~~~v~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 154 (156)
..-+|++.++. +-.+.. |-.+.-.|.||+++
T Consensus 269 g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~ 302 (635)
T KOG0323|consen 269 GDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQ 302 (635)
T ss_pred CCccEEEEeCccccccCCCcceEEeeeeecccCc
Confidence 54455555554 222222 33444556666554
No 241
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.42 E-value=12 Score=23.49 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHH--CCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~--~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
..++++.+++ .+.+++++|+..... .....-+.|..+++
T Consensus 58 ~~~~~~~i~~~~~~~~ii~~t~~~~~~-~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 58 GLELLEQIRQINPSIPIIVVTDEDDSD-EVQEALRAGADDYL 98 (112)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESSTSHH-HHHHHHHTTESEEE
T ss_pred ccccccccccccccccEEEecCCCCHH-HHHHHHHCCCCEEE
Confidence 4466777766 348999999777655 23334466655444
No 242
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=79.84 E-value=3.9 Score=31.28 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCceEEEecCCcccccccccc-------------ccCCCcc----cCCcHHHHHHHHHHC------CCeEEEEcCCCChh
Q 031610 21 LPRLVVFDLDYTLWPFYCECC-------------YEDEIPY----LYPHAKGILEALKEK------GIHVAVASRSPAPD 77 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~-------------~~~~~~~----l~~~~~~~L~~L~~~------G~~v~i~T~~~~~~ 77 (156)
.++ |+||-|++|.+-..+.. ......+ ++..-...|.+++++ -++++|+|.|+.+.
T Consensus 121 qlR-IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apa 199 (264)
T PF06189_consen 121 QLR-IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPA 199 (264)
T ss_pred ceE-EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCch
Confidence 344 99999999997322210 0000111 333444566666543 37899999988776
Q ss_pred HHHHHHHHcC
Q 031610 78 IAKTFLHKLG 87 (156)
Q Consensus 78 ~~~~~l~~l~ 87 (156)
..+.++.|.
T Consensus 200 -h~RvI~TLr 208 (264)
T PF06189_consen 200 -HERVIRTLR 208 (264)
T ss_pred -hHHHHHHHH
Confidence 466666653
No 243
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=78.46 E-value=16 Score=29.89 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=34.3
Q ss_pred cCCCcccCCcHHHHHHHHHHCCCeEEEE-cCCC---ChhHHHHHHHHcCCCCC
Q 031610 43 EDEIPYLYPHAKGILEALKEKGIHVAVA-SRSP---APDIAKTFLHKLGIHSM 91 (156)
Q Consensus 43 ~~~~~~l~~~~~~~L~~L~~~G~~v~i~-T~~~---~~~~~~~~l~~l~l~~~ 91 (156)
.++....+|...++++.+++.|+++++. ||+. ... ....+...+++..
T Consensus 81 GGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e-~~~~L~~~gld~v 132 (404)
T TIGR03278 81 GGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPE-IAEFLIDNGVREV 132 (404)
T ss_pred CCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHH-HHHHHHHcCCCEE
Confidence 4545568899999999999999999995 9864 333 3444555566544
No 244
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=76.82 E-value=13 Score=22.99 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-... .-.++++-|||.++
T Consensus 21 ~sL~EL~~K~~~~l~~~~~-~~~lvL~eDGT~Vd 53 (78)
T cd06539 21 SSLQELISKTLDALVITSG-LVTLVLEEDGTVVD 53 (78)
T ss_pred cCHHHHHHHHHHHhCCCCC-CcEEEEeCCCCEEc
Confidence 4567777777777665443 34599999999997
No 245
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=76.64 E-value=1.8 Score=32.22 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE--Eec-ccCCCCCCHHHHHHHHHHhCCCCcCce
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV--VIY-MYTKDSSNASSSESTCAIFHFHPKRSC 126 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~--~~~-~~~~~kp~p~~~~~~~~~~~~~~~~~~ 126 (156)
+...-++++-|.+.....-|+-++.+... +..--.+|...+....- +.. -.-..||+|..++.+++.+|+.|+++.
T Consensus 124 y~~ln~AFrvL~e~~k~~LIai~kgryyk-r~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aV 202 (262)
T KOG3040|consen 124 YQRLNRAFRVLLEMKKPLLIAIGKGRYYK-RVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAV 202 (262)
T ss_pred HHHHHHHHHHHHcCCCCeEEEecCceeee-eccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHhe
Confidence 34455677778776555555555554331 21111233333332211 111 122369999999999999999999998
Q ss_pred eEe
Q 031610 127 SIF 129 (156)
Q Consensus 127 ~v~ 129 (156)
+|+
T Consensus 203 MIG 205 (262)
T KOG3040|consen 203 MIG 205 (262)
T ss_pred EEc
Confidence 775
No 246
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=75.95 E-value=12 Score=22.90 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-... .-.|+++-|||.++
T Consensus 19 ~sL~eL~~K~~~~l~l~~~-~~~l~L~eDGT~Vd 51 (74)
T smart00266 19 SSLEELLSKVCDKLALPDS-PVTLVLEEDGTIVD 51 (74)
T ss_pred CCHHHHHHHHHHHhCCCCC-CcEEEEecCCcEEc
Confidence 3567777777777665443 34599999999997
No 247
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=73.88 E-value=5.4 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=32.2
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
..+++|+.++++.|.++++++.|.|++-..- +..+++..+...
T Consensus 89 i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdv-I~~vL~q~~~~~ 131 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEHNIPLLIFSAGLGDV-IEEVLRQAGVFH 131 (246)
T ss_dssp --B-BTHHHHHHHHHCTT--EEEEEEEEHHH-HHHHHHHTT--B
T ss_pred hhhhcCHHHHHHHHHhcCCCEEEEeCCcHHH-HHHHHHHcCCCC
Confidence 4699999999999999999999999998665 788888876544
No 248
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=73.56 E-value=22 Score=25.97 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEE
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVA 70 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~ 70 (156)
.+.+.++..+....+.++.|||=-||+.+.. .+ ..+.+.|+.|.++|..+..|
T Consensus 105 ~Lm~~f~~~L~e~~~~p~~Ifl~n~gV~l~~------~~------~~~~e~Lk~L~~~Gv~I~~C 157 (194)
T TIGR03527 105 ILMKGFIYTLSELDPLPKRILFVNGGVKLTT------EG------SEVLEDLKELEKKGVEILSC 157 (194)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEccceeecc------CC------chHHHHHHHHHHCCCEEEEe
Confidence 4556777777777777888999999998862 11 35889999999999999877
No 249
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=72.24 E-value=7.6 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.4
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
.+.|++.++++.|-+. +.+.|+|..
T Consensus 68 ~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 68 GVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred CccccHHHHHHHHHhh-heEEEEEec
Confidence 4778899999999776 888888865
No 250
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=72.04 E-value=7.4 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3568899999999999999999987665
No 251
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=71.99 E-value=12 Score=26.49 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-C-CeEEEEcCCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-G-IHVAVASRSPA 75 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G-~~v~i~T~~~~ 75 (156)
.+|++++|-|+++.- +.. ..+-|.-.+-++++++. | .-++++||...
T Consensus 42 ~ikavVlDKDNcit~------P~~--~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG 90 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA------PYS--LAIWPPLLPSIERCKAVYGEKDIAVFSNSAG 90 (190)
T ss_pred CceEEEEcCCCeeeC------Ccc--cccCchhHHHHHHHHHHhCcccEEEEecCcC
Confidence 689999999999874 222 14556666777777652 2 56888887653
No 252
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=71.98 E-value=2.7 Score=30.10 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=20.3
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
.+..++...|..+++. .+++.+|++...
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~d 99 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKAD 99 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHH
Confidence 3556777788888776 688888988743
No 253
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.50 E-value=15 Score=31.43 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=40.8
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc--CCCChhHHHHHHHHcCCCCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T--~~~~~~~~~~~l~~l~l~~~f 92 (156)
+.++|+||-+++.. +.+. -...+.+....+-|.+++|+| +.++.+ +.++...++-.-|.
T Consensus 257 iAvldldGevl~~~----S~r~-----~~~~eVve~I~~lG~PvvVAtDVtp~P~~-V~KiAasf~A~ly~ 317 (652)
T COG2433 257 IAVLDLDGEVLDLE----SRRG-----IDRSEVVEFISELGKPVVVATDVTPAPET-VKKIAASFNAVLYT 317 (652)
T ss_pred EEEEecCCcEEeee----cccc-----CCHHHHHHHHHHcCCceEEEccCCCChHH-HHHHHHHcCCcccC
Confidence 35789999999841 1121 124567788888899999999 555666 68888777654443
No 254
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=71.03 E-value=13 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=25.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+...++++.+++.|+.+.+.||+....
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~~ 103 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNPR 103 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCHH
Confidence 466778899999999999999999997554
No 255
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=70.96 E-value=27 Score=28.16 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=54.7
Q ss_pred CCceEEEecCCccccc-cccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 21 LPRLVVFDLDYTLWPF-YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~-~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
..-.+++||-++|+-- |.. ..+=...-.||+.-+|..|. +.+.+++.|+....+ +..++++++-.+++.+-+.
T Consensus 188 p~yTLVleledvLVhpdws~--~tGwRf~kRPgvD~FL~~~a-~~yEIVi~sse~gmt-~~pl~d~lDP~g~IsYkLf 261 (393)
T KOG2832|consen 188 PPYTLVLELEDVLVHPDWSY--KTGWRFKKRPGVDYFLGHLA-KYYEIVVYSSEQGMT-VFPLLDALDPKGYISYKLF 261 (393)
T ss_pred CCceEEEEeeeeEeccchhh--hcCceeccCchHHHHHHhhc-ccceEEEEecCCccc-hhhhHhhcCCcceEEEEEe
Confidence 3457999999999841 221 11111246799999999996 679999999999888 7999999988877776443
No 256
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.68 E-value=7.1 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=25.1
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34678999999999999999999987665
No 257
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=68.37 E-value=9.7 Score=26.41 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=25.9
Q ss_pred cCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 43 EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 43 ~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.|+ ...+...++++.+++.|+++.+-||.....
T Consensus 69 GGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~ 101 (147)
T TIGR02826 69 GGE--WNREALLSLLKIFKEKGLKTCLYTGLEPKD 101 (147)
T ss_pred chh--cCHHHHHHHHHHHHHCCCCEEEECCCCCHH
Confidence 454 344678899999999999999999876544
No 258
>PRK11660 putative transporter; Provisional
Probab=67.63 E-value=47 Score=28.25 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHhccCCCCCceEEEecCCcc-ccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHH
Q 031610 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL-~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~ 81 (156)
.++++.++..+.. +..+.+++|+.++= +| + .-.....+..+++++ |.++.++.-++ . +++
T Consensus 476 n~~~l~~~l~~~~----~~~~~VVlD~~~V~~iD------s-----sg~~~L~~l~~~l~~-g~~l~l~~l~~--~-v~~ 536 (568)
T PRK11660 476 AAERLFTELESRT----EGKRIVVLQWDAVPVLD------A-----GGLDAFQRFVKRLPE-GCELRICNLQF--Q-PLR 536 (568)
T ss_pred eHHHHHHHHHhhC----CCCCEEEEEcCCCCccc------H-----HHHHHHHHHHHHHHC-CCEEEEecCCh--H-HHH
Confidence 4556665443332 45678999998763 23 1 222345567788888 99998885444 4 688
Q ss_pred HHHHcCCCCC
Q 031610 82 FLHKLGIHSM 91 (156)
Q Consensus 82 ~l~~l~l~~~ 91 (156)
.+++.|+...
T Consensus 537 ~l~~~gl~~~ 546 (568)
T PRK11660 537 TLARAGIQPI 546 (568)
T ss_pred HHHHCCChhh
Confidence 8888877553
No 259
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=66.97 E-value=22 Score=31.64 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEecCCcccc-ccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWP-FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~-~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.+..+.+..+.+....=....+.+|+| .+. .|..+.=+. .-+|.-.+.++.|+++|+++++.-+..
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~lD~~--~~~~~~~~F~wd~---~~FP~pk~mi~~l~~~Gikl~~~i~P~ 344 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFVLDID--FWMDNWGDFTWDP---DRFPDPKQMIAELHEKGIKLIVIINPY 344 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEEEeeh--hhhccccceEECc---ccCCCHHHHHHHHHhcCceEEEEeccc
Confidence 456666777777666556788999999 222 222211122 467888999999999999999887553
No 260
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.96 E-value=11 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 3678899999999999999999987665
No 261
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.60 E-value=32 Score=26.93 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=36.4
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
+.++-+....=....|.+|+|-.=-..+....-+. ..+|...+.++.|+++|+++++..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~---~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 28 DVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDP---ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred HHHHHHHHhCCCccEEEEechhhcCCCceeEEECh---hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 44444444433457789998732101100111222 467899999999999999998765
No 262
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=66.51 E-value=7.1 Score=29.25 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 45 ~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
..+.+.+...++++.+++.|+++.+-||+....
T Consensus 81 GEPll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 81 GNPALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred CchhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 334567889999999999999999999998643
No 263
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=65.22 E-value=9.8 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=25.9
Q ss_pred cCCCcccCCc-HHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 43 EDEIPYLYPH-AKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 43 ~~~~~~l~~~-~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
.++ +.+.+. +.++++.+++.|+.+++-||+...
T Consensus 46 GGE-Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 46 GGE-VLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred Cch-HHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 343 345555 689999999999999999999654
No 264
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=65.16 E-value=19 Score=22.08 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=28.5
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
....+.++|-||+.+. +++ ..++++.+.+.|.-++.++....
T Consensus 11 ~~~~VrlI~~~g~~lG-------------v~~-~~eAl~~A~~~~lDLV~v~~~~~ 52 (76)
T PF05198_consen 11 RAPEVRLIDEDGEQLG-------------VMS-LREALRLAKEKGLDLVEVSPNAD 52 (76)
T ss_dssp --SEEEEE-TTS-EEE-------------EEE-HHHHHHHHHHTT-EEEEEETTSS
T ss_pred CCCEEEEECCCCcEec-------------eEE-HHHHHHHHHHcCCcEEEEcCCCC
Confidence 3456677899999874 222 77999999999999999985543
No 265
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=64.10 E-value=32 Score=21.29 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-. +..-.++++-|||.++
T Consensus 21 ~sL~eL~~K~~~~l~l~-~~~~~lvL~eDGTeVd 53 (78)
T cd01615 21 SSLEELLSKACEKLKLP-SAPVTLVLEEDGTEVD 53 (78)
T ss_pred CCHHHHHHHHHHHcCCC-CCCeEEEEeCCCcEEc
Confidence 34677777777776654 3344599999999997
No 266
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.84 E-value=18 Score=22.37 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-..... .++++-|||.++
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~-~lvL~eDGT~Vd 53 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPV-RLVLEEDGTEVD 53 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTC-EEEETTTTCBES
T ss_pred CCHHHHHHHHHHHhCCCCcCc-EEEEeCCCcEEc
Confidence 457788888888877655444 478899999998
No 267
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=63.63 E-value=13 Score=26.27 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34678889999999999999999988766
No 268
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=63.55 E-value=39 Score=26.80 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
+.++-+.+..=.+.+|.+|+|=. +.+....-+. .-+|...+.++.|++.|+++++...
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~--~~~~~Ft~d~---~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQ--DNYRTFTTNG---GGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchh--cCCCceeecC---CCCCCHHHHHHHHHHCCCeEEEEec
Confidence 44455555444567899999743 3322222222 4678899999999999999988664
No 269
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=63.25 E-value=8.5 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
|.-.+.|+.|.++|.++.|.|-..
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~e 25 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSE 25 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHH
Confidence 345689999999999999986443
No 270
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=63.19 E-value=38 Score=26.71 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 9 ~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
++|.+|+..+...--.+|+-+-|-++. .|.++.++.|-+.|+.=+++|.+..- ....++.+|.
T Consensus 41 ~eA~~I~~~m~~~~~tvfl~~tg~~vs---------------sGlR~iia~LIr~~~idvvVTTgg~l--~hDi~~~lg~ 103 (318)
T COG1899 41 AEAVEILREMLESRVTVFLGLTGNLVS---------------SGLREIIADLIRNGLIDVVVTTGGNL--DHDIIKALGG 103 (318)
T ss_pred HHHHHHHHHHHhhcCEEEEeccccccc---------------hhHHHHHHHHHHcCCeEEEEecCCch--hHHHHHHcCC
Confidence 378888876554434566666665553 67899999999988776666644432 3666777774
Q ss_pred C
Q 031610 89 H 89 (156)
Q Consensus 89 ~ 89 (156)
.
T Consensus 104 ~ 104 (318)
T COG1899 104 P 104 (318)
T ss_pred C
Confidence 3
No 271
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=62.97 E-value=18 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.4
Q ss_pred CCcccCCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 45 ~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
..+.+.|...+.++.++++|..+.++||+..-
T Consensus 81 GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 81 GEPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 34568899999999999999999999999753
No 272
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=62.45 E-value=46 Score=23.47 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=44.7
Q ss_pred HHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 7 ~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
...++..++..-.+.-.+|.+|+.|--+++ +.-.+.|+.++..|-.++++=|++.-- ...+.+
T Consensus 53 ~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sS--------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl-~~~~~~ 115 (155)
T COG1576 53 KKKEGEAILAAIPKGSYVVLLDIRGKALSS--------------EEFADFLERLRDDGRDISFLIGGADGL-SEAVKA 115 (155)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCcCCh--------------HHHHHHHHHHHhcCCeEEEEEeCcccC-CHHHHH
Confidence 344556666666667789999999998862 346689999999997788887777433 344444
No 273
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=61.73 E-value=21 Score=25.84 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=43.1
Q ss_pred eEEEEcCCCChhHHHHHHHHcCCCCCCc-eEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhh
Q 031610 66 HVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQ 140 (156)
Q Consensus 66 ~v~i~T~~~~~~~~~~~l~~l~l~~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 140 (156)
...+++...... +...++.++....+. .....+-.....++...+..+++.++++++++..++ -+.+++.|+.
T Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~G-D~~NDi~m~~ 182 (225)
T TIGR01482 109 LVKMRYGIDVDT-VREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCG-DSENDIDLFE 182 (225)
T ss_pred eEEEeecCCHHH-HHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEEC-CCHhhHHHHH
Confidence 344555555455 567777776431110 001112223345677889999999999998866544 4566777774
No 274
>PRK04531 acetylglutamate kinase; Provisional
Probab=60.28 E-value=27 Score=28.50 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
+++.++.=++|.++. . ..+....-|..|++.|.+++|+=|.. +. +...+++.|+..-|.
T Consensus 35 ~~~~~VIKiGG~~l~------~------~~~~l~~dla~L~~~G~~~VlVHGgg-pq-I~~~l~~~gie~~~v 93 (398)
T PRK04531 35 AERFAVIKVGGAVLR------D------DLEALASSLSFLQEVGLTPIVVHGAG-PQ-LDAELDAAGIEKETV 93 (398)
T ss_pred CCcEEEEEEChHHhh------c------CHHHHHHHHHHHHHCCCcEEEEECCC-HH-HHHHHHHcCCCcEEE
Confidence 458899999999885 1 12567788888999999999999887 44 699999999877553
No 275
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=59.92 E-value=31 Score=24.81 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred ccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 16 GQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 16 ~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
+......++.+.|-||+++. +.+ ..++|+.+.+.|.-++.++..+
T Consensus 14 Ne~I~~~~Vrli~~dG~~lg-------------v~~-~~eAl~~A~~~~lDLV~v~~~~ 58 (177)
T PRK00028 14 NEQIRAREVRLIGDDGEQLG-------------IVS-TREALELAEEAGLDLVEISPNA 58 (177)
T ss_pred CcCcCCCEEEEECCCCcCCC-------------cee-HHHHHHHHHHcCCCEEEECCCC
Confidence 33444556788899999775 223 7799999999999999988554
No 276
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=59.32 E-value=20 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610 103 KDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 103 ~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (156)
....++..+..+++.++++++++..++ -+.+++.|++.
T Consensus 154 ~~~~Kg~al~~l~~~~~i~~~~~i~~G-D~~NDi~m~~~ 191 (230)
T PRK01158 154 PGVNKGTGLKKLAELMGIDPEEVAAIG-DSENDLEMFEV 191 (230)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEC-CchhhHHHHHh
Confidence 345578899999999999998876544 56667888754
No 277
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=59.28 E-value=15 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34679999999999999999999887554
No 278
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=59.25 E-value=21 Score=28.21 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=30.8
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcCCCChh-HHHHHHHHcCCC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD-IAKTFLHKLGIH 89 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~-~~~~~l~~l~l~ 89 (156)
+.+.|+..+.++.+++.|+.+.+.||+..-. -....+...+++
T Consensus 64 Pll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 64 PLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD 107 (358)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence 4578889999999999999999999986422 023334445544
No 279
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=58.91 E-value=5.6 Score=31.71 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.9
Q ss_pred CCCCceEEEecCCcccc
Q 031610 19 ENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~ 35 (156)
-+.++++-||||.||..
T Consensus 9 l~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQ 25 (343)
T ss_pred cccCCEEEECccccccc
Confidence 35689999999999996
No 280
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=58.68 E-value=14 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.+.+.++++.++++|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678899999999999999999755
No 281
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=58.42 E-value=4.7 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.7
Q ss_pred cCCCCCceEEEecCCccccc
Q 031610 17 QFENLPRLVVFDLDYTLWPF 36 (156)
Q Consensus 17 ~~~~~~k~i~fDlDGTL~~~ 36 (156)
.....+..+.||+.+||=.+
T Consensus 40 ~~~~~P~iV~FDmK~Tld~F 59 (128)
T PRK13717 40 VRLNAPVTAAFNMKQTVDAF 59 (128)
T ss_pred hhcCCCeEEEEehHHHHHHH
Confidence 34457789999999998664
No 282
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.10 E-value=21 Score=23.26 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
..+.+.++.++++|.+++.+|+.....
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 568889999999999999999887665
No 283
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=57.48 E-value=24 Score=25.52 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=41.6
Q ss_pred eEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610 66 HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 66 ~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (156)
..++.++..... +...++..++...... ...+-......+...++.+++.+++++++..+++ -+.+++.|++.
T Consensus 109 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iG-Ds~ND~~ml~~ 181 (215)
T TIGR01487 109 LVIMREGKDVDE-VREIIKERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIG-DSENDIDLFRV 181 (215)
T ss_pred EEEecCCccHHH-HHHHHHhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEEC-CCHHHHHHHHh
Confidence 334455555555 5667776654432111 0111122234566699999999999988765444 45557777753
No 284
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=56.38 E-value=24 Score=28.19 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred CcccCCcHHHHHHHHHHCCCeEEEEcCCCChh-HHHHHHHHcCCC
Q 031610 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPD-IAKTFLHKLGIH 89 (156)
Q Consensus 46 ~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~-~~~~~l~~l~l~ 89 (156)
.+.+.|...+.++.+++.|+.+.+.||+..-. -....+...+++
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~ 116 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLD 116 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCC
Confidence 34678889999999999999999999987422 023344555544
No 285
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=56.22 E-value=43 Score=23.77 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
...+.+.|-||+++. +.+ ..++|+.+.+.|.-++.++..+
T Consensus 7 ~~~Vrli~~dG~~lg-------------v~~-~~eAl~~A~~~~lDLVev~~~a 46 (165)
T TIGR00168 7 FNEVRLIDENGEQLG-------------IVS-REEALEIAEEAGLDLVLISPNA 46 (165)
T ss_pred CCEEEEECCCCcCCC-------------ccc-HHHHHHHHHHcCCcEEEECCCC
Confidence 346677899999774 333 7899999999999999998654
No 286
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.98 E-value=61 Score=25.02 Aligned_cols=65 Identities=15% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhccCCCCCceEEEecCCccc-------cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 5 EKVKNEALEIIGQFENLPRLVVFDLDYTLW-------PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~-------~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
++|. +.++-+....=...+|.+|+|=... +.+....-+. ..+|.-.+.++.|+++|+++++....
T Consensus 25 ~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~---~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 25 EEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNR---KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred HHHH-HHHHHHHHhCCCccEEEEecccccccccccccCCcceeEECh---hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 3443 4555555544456789999872211 1111111222 46899999999999999999987744
No 287
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=55.47 E-value=29 Score=23.56 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=33.0
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC--ChhHHHHHHHHcC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--APDIAKTFLHKLG 87 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~--~~~~~~~~l~~l~ 87 (156)
.|+||.|----. ...+.....++-+.|.++|..+-+++..+ ... +..++...|
T Consensus 72 ~iaFD~D~~~~T----------n~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KG-iDD~l~~~G 126 (130)
T PF12965_consen 72 YIAFDADTKPKT----------NKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKG-IDDLLAAKG 126 (130)
T ss_pred EEEecCCCccch----------hHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCC-HhHHHHhcC
Confidence 489999832110 11355666677788899999999999663 333 344444333
No 288
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.16 E-value=22 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.+.++++.++++|.+++++|+.....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 557889999999999999999887554
No 289
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=55.10 E-value=49 Score=20.52 Aligned_cols=58 Identities=16% Similarity=0.340 Sum_probs=37.8
Q ss_pred CceEEEecCCc-cccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 22 PRLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 22 ~k~i~fDlDGT-L~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
.+.+++|+-++ .+|+ .......++.+.++++|.++.++.-+ +. +...+...|+...+.
T Consensus 41 ~~~lilD~~~v~~iDs-----------s~~~~L~~~~~~~~~~~~~~~l~~~~--~~-~~~~l~~~g~~~~~~ 99 (107)
T cd07042 41 LKVVILDLSAVNFIDS-----------TAAEALEELVKDLRKRGVELYLAGLN--PQ-VRELLERAGLLDEIG 99 (107)
T ss_pred ceEEEEECCCCchhhH-----------HHHHHHHHHHHHHHHCCCEEEEecCC--HH-HHHHHHHcCcHHHhC
Confidence 36788999885 4441 12223445677788899888877333 34 588888888766543
No 290
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=55.04 E-value=40 Score=25.45 Aligned_cols=35 Identities=3% Similarity=-0.008 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhCCCC-cCceeEeeehhhhHHHhhc
Q 031610 106 SNASSSESTCAIFHFHP-KRSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 106 p~p~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 141 (156)
.+...+..+++.+++++ +++..++ -+.+++.|++.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~G-Ds~NDi~m~~~ 225 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALG-DSPNDLPMLEA 225 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEc-CChhhHHHHHh
Confidence 45567889999999999 7766544 55667777754
No 291
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=54.91 E-value=50 Score=20.60 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.- +. .-.|+++-|||.++
T Consensus 21 ~sL~EL~~K~~~~L~~-~~-~~~lvLeeDGT~Vd 52 (81)
T cd06537 21 ASLQELLAKALETLLL-SG-VLTLVLEEDGTAVD 52 (81)
T ss_pred cCHHHHHHHHHHHhCC-CC-ceEEEEecCCCEEc
Confidence 4567777777777664 22 35699999999997
No 292
>PF08934 Rb_C: Rb C-terminal domain; InterPro: IPR015030 The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle. This domain has a strand-loop-helix structure, which directly interacts with both E2F1 and DP1, followed by a tail segment that lacks regular secondary structure []. ; PDB: 1H25_E 1GUX_B 3POM_A 1GH6_B 2AZE_C 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A ....
Probab=54.61 E-value=2.9 Score=28.77 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=5.8
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCcc
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTL 33 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL 33 (156)
|-++++++. +..++..|-+.||+||--
T Consensus 86 Rs~KR~~~~-~~a~kPlKRL~fd~~gqd 112 (155)
T PF08934_consen 86 RSKKRSLDS-SDAPKPLKRLRFDMDGQD 112 (155)
T ss_dssp T-----STT-----TT----EE------
T ss_pred hhhhhhccC-CCCCChHHHhhccccCCc
Confidence 455677773 667777788999999973
No 293
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=54.12 E-value=22 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34678889999999999999999987665
No 294
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=54.05 E-value=12 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
+.++|++|++. +.++|+||+..+. ....+..-.+...|+++++
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k-~~eQl~~~~~~~~fdy~f~ 43 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPK-IQEQLGGDDVLDNFDYVFP 43 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHH-HHHHHSTTTHHHH-SEEEE
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHH-HHHHHcccchHhhCCeeec
Confidence 46889999875 9999999999655 3443321122334565543
No 295
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=54.04 E-value=1.2e+02 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.174 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEecCCccc
Q 031610 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLW 34 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~ 34 (156)
+++|+.+.-.+.... ...+.++| .|+++.
T Consensus 229 ~e~V~~Ei~~~~~~~-~~~~~i~f-~Dd~f~ 257 (472)
T TIGR03471 229 AESVIEEVKYALENF-PEVREFFF-DDDTFT 257 (472)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEE-eCCCCC
Confidence 567775554444332 34566777 477765
No 296
>PF13707 RloB: RloB-like protein
Probab=53.89 E-value=34 Score=24.10 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHHHhc----cCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 2 GDLEKVKNEALEIIG----QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~----~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
|++..|+..|..... ...-..-.++||.| . .. .-.+...++++.++++++.++ .||.. .+
T Consensus 38 ~~p~~lv~~a~~~~~~~~~~~~~d~v~~V~D~D----~------~~----~~~~~~~~~~~~a~~~~i~l~-~SnPc-FE 101 (183)
T PF13707_consen 38 SDPSSLVEKAKKKRKKKKNDNEYDEVWCVFDRD----Q------ND----FEHEKLEEAIKKAKRNKINLA-VSNPC-FE 101 (183)
T ss_pred CCHHHHHHHHHHHHhhhccccCCCEEEEEEeCC----C------Cc----CcHHHHHHHHHhccccCeEEE-EecCc-HH
Confidence 567788888888877 22223345899999 2 11 112335567777777765554 55655 44
Q ss_pred HHHHHH
Q 031610 78 IAKTFL 83 (156)
Q Consensus 78 ~~~~~l 83 (156)
++-++
T Consensus 102 -~WlLl 106 (183)
T PF13707_consen 102 -LWLLL 106 (183)
T ss_pred -HHHHH
Confidence 35554
No 297
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=53.60 E-value=54 Score=25.86 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
+.++-+.+..=....|.+|+|=+ +.+....-+. ..+|...+.++.|+++|+++++...
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~--~~~~~f~~d~---~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 28 EVDAGFDEHDIPYDVIWLDIEHT--DGKRYFTWDK---KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred HHHHHHHHcCCCceEEEEChHHh--CCCCceEeCc---ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 34444444433456788898732 2111111112 4688999999999999999988664
No 298
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=53.51 E-value=61 Score=25.37 Aligned_cols=58 Identities=17% Similarity=0.403 Sum_probs=37.3
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
+.++-+....=....|.+|+|-+ +.+....-+. ..+|.-.++++.|+++|+++++...
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~--~~~~~f~~d~---~~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYM--DSYRLFTWDP---YRFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhh--CCCCceeech---hcCCCHHHHHHHHHHCCCEEEEEee
Confidence 44455555444567788897643 2221111222 4688999999999999999887653
No 299
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.47 E-value=28 Score=23.00 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=19.0
Q ss_pred CcHHHHHHHHHHCCC-eE-EEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 51 PHAKGILEALKEKGI-HV-AVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~-~v-~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
+.+.+.++.|+++|. .+ .++-|+.... ....+.++|++.+|
T Consensus 65 ~~~~~~~~~L~~~~~~~i~i~~GG~~~~~-~~~~~~~~G~d~~~ 107 (122)
T cd02071 65 TLFPEVIELLRELGAGDILVVGGGIIPPE-DYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHCCCCEEE
Confidence 345556666666643 22 2233333333 24445566655444
No 300
>PRK13937 phosphoheptose isomerase; Provisional
Probab=53.02 E-value=24 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.4
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 34678889999999999999999887655
No 301
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=52.43 E-value=55 Score=20.36 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHhccCC-CCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFE-NLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-.. ...-.|+++-|||.++
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~Vd 55 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVE 55 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEc
Confidence 356777777777766542 2345699999999997
No 302
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=52.06 E-value=36 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.6
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
+.|.+.++++.++++|.++.++-|+-
T Consensus 92 v~pQTiEAI~hak~a~vP~iVAiNKi 117 (509)
T COG0532 92 VMPQTIEAINHAKAAGVPIVVAINKI 117 (509)
T ss_pred cchhHHHHHHHHHHCCCCEEEEEecc
Confidence 66889999999999999999999874
No 303
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=51.62 E-value=81 Score=22.07 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHH-HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHH
Q 031610 4 LEKVKN-EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKT 81 (156)
Q Consensus 4 ~~~~~~-~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~ 81 (156)
.++++. ++..++...++.-..|++|..|-.+++ ++-.+.|+.+...|. .++++-|++.-. ...
T Consensus 49 ~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGG~~G~-~~~ 113 (155)
T PF02590_consen 49 IEKIKEKEGERILKKIPPNDYVILLDERGKQLSS--------------EEFAKKLERWMNQGKSDIVFIIGGADGL-SEE 113 (155)
T ss_dssp HHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--H--------------HHHHHHHHHHHHTTS-EEEEEE-BTTB---HH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcCCCccCCh--------------HHHHHHHHHHHhcCCceEEEEEecCCCC-CHH
Confidence 344443 444555555566678999999999972 346688888888887 889998888543 355
Q ss_pred HHHH
Q 031610 82 FLHK 85 (156)
Q Consensus 82 ~l~~ 85 (156)
+.++
T Consensus 114 ~~~~ 117 (155)
T PF02590_consen 114 VRKR 117 (155)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5544
No 304
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.46 E-value=23 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4678899999999999999999887655
No 305
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=51.25 E-value=80 Score=23.54 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=44.4
Q ss_pred cCCcH-HHHHHHHHHCCCeEEEEcCCCCh-----hHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCC
Q 031610 49 LYPHA-KGILEALKEKGIHVAVASRSPAP-----DIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHF 120 (156)
Q Consensus 49 l~~~~-~~~L~~L~~~G~~v~i~T~~~~~-----~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 120 (156)
+.|.. .++.+.++++|++..|+.+.... . ..+.++.+|+.-.|....|+-+- ..-..+...++.+|-
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~-lk~~~e~~gi~~~~P~~~CsL~~----~~~p~i~~F~~~fGk 132 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQ-LKKQLEEFGIEVEFPKPFCSLEE----NGNPQIDEFAEYFGK 132 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHHH-HHHHHHhcCceeecCccccccCC----CCChhHHHHHHHhCC
Confidence 44544 46777888899999988876656 6 58888888887777666654321 223345566666764
No 306
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=51.11 E-value=1e+02 Score=23.50 Aligned_cols=85 Identities=8% Similarity=0.133 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh--CCCCcCceeEe
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF--HFHPKRSCSIF 129 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~--~~~~~~~~~v~ 129 (156)
-++.++..+..+|.+++=++...... ...+++.+.-.. .-+++..+|..... .-..|..+...+ ++.......++
T Consensus 68 lVkall~~y~~~GLRlIev~k~~L~~-l~~l~~~l~~~~-~kFIlf~DDLsFe~-~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 68 LVKALLNEYADQGLRLIEVSKEDLGD-LPELLDLLRDRP-YKFILFCDDLSFEE-GDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred HHHHHHHHHhhcCceEEEECHHHhcc-HHHHHHHHhcCC-CCEEEEecCCCCCC-CcHHHHHHHHHhcCccccCCCcEEE
Confidence 36678899999999999998877776 577777776333 34444444433221 222334443333 35555566677
Q ss_pred eehhhhHHHh
Q 031610 130 MFQQVMIEMF 139 (156)
Q Consensus 130 ~~~~~~~~~~ 139 (156)
|+|.|=.++.
T Consensus 145 yATSNRRHLv 154 (249)
T PF05673_consen 145 YATSNRRHLV 154 (249)
T ss_pred EEecchhhcc
Confidence 8887755444
No 307
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=51.08 E-value=24 Score=26.00 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=24.6
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
...++..++++.+++.|+++.+=||++...
T Consensus 83 ~~~~~l~~Ll~~l~~~g~~~~lETngti~~ 112 (212)
T COG0602 83 LLQPNLLELLELLKRLGFRIALETNGTIPV 112 (212)
T ss_pred CCcccHHHHHHHHHhCCceEEecCCCCccc
Confidence 345689999999999999999999887543
No 308
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=50.93 E-value=85 Score=22.06 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=41.9
Q ss_pred HHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHH
Q 031610 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~ 84 (156)
..++..++....+.-..|++|-.|..+++ +.-.+.|+.+...|. .++++=|++.-. ...+.+
T Consensus 54 ~~E~~~il~~l~~~~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGGa~G~-~~~v~~ 116 (157)
T PRK00103 54 AKEGERILAALPKGARVIALDERGKQLSS--------------EEFAQELERWRDDGRSDVAFVIGGADGL-SPAVKK 116 (157)
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCccEEEEEcCcccc-CHHHHH
Confidence 44555666655554467999999999872 335678888888886 788888887433 244444
No 309
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=50.29 E-value=66 Score=24.76 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 7 ~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
+.++++.-+..... +.++.=+.|.+++ . . .+.+...+-|..|++.|.+++++-|..+. ....++++
T Consensus 10 ~~~~~~pyi~~~~~--~~~VIk~gG~~~~------~-~---~l~~~~~~di~~l~~~g~~~VlVHGgg~~--i~~~~~~~ 75 (284)
T CHL00202 10 VLSEALPYIQKFRG--RIMVIKYGGAAMK------N-L---ILKADIIKDILFLSCIGLKIVVVHGGGPE--INFWLKQL 75 (284)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEChHHhc------C-c---chHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHC
Confidence 34455555555555 5678889998875 1 1 34556778888899999999999988844 58889999
Q ss_pred CCCCCC
Q 031610 87 GIHSMF 92 (156)
Q Consensus 87 ~l~~~f 92 (156)
|+...|
T Consensus 76 g~~~~~ 81 (284)
T CHL00202 76 NISPKF 81 (284)
T ss_pred CCCCEe
Confidence 987655
No 310
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=49.62 E-value=1.1e+02 Score=25.80 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=59.0
Q ss_pred ccCC--cHHHHHHHHHHCCCeEEEEcCCCC-hhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcC
Q 031610 48 YLYP--HAKGILEALKEKGIHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKR 124 (156)
Q Consensus 48 ~l~~--~~~~~L~~L~~~G~~v~i~T~~~~-~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 124 (156)
.++| ...++.+.+.+.|.+++++|.--. ..+.+..+...|.+..-.-++.+.+....|.+...+..+++.-+++|..
T Consensus 97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~ 176 (635)
T COG5610 97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKK 176 (635)
T ss_pred EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhh
Confidence 3555 456788999999999999995532 3335777778887766555666667777888899999999999998876
Q ss_pred c
Q 031610 125 S 125 (156)
Q Consensus 125 ~ 125 (156)
-
T Consensus 177 w 177 (635)
T COG5610 177 W 177 (635)
T ss_pred e
Confidence 3
No 311
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=49.56 E-value=22 Score=21.28 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEc
Q 031610 50 YPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T 71 (156)
.+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678899999999999999888
No 312
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=49.38 E-value=61 Score=21.60 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=31.5
Q ss_pred EEEEcCCC-ChhHHHHHHHHc----CCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610 67 VAVASRSP-APDIAKTFLHKL----GIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 67 v~i~T~~~-~~~~~~~~l~~l----~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
++|||++. ++.+++.+++.+ .-.. +.....+-......|-......+++..|++..
T Consensus 2 LFvC~~N~cRS~mAEai~~~~~~~~~~~~-~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~ 62 (138)
T PF01451_consen 2 LFVCTGNICRSPMAEAILRHLLKQRLGDR-FEVESAGTEAWPGEPVDPRAIAVLKEHGIDIS 62 (138)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHTHTTT-EEEEEEESSSTTTSSSTHHHHHHHHHTTSSCT
T ss_pred EEEeCCCcchHHHHHHHHHHhccccccCC-cEEEEEeecccccccccchHHHHHHHhCCCcc
Confidence 68899664 455567777766 2222 22222222211445555566677788898765
No 313
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.10 E-value=90 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
+.++.+....=....|.+|.+=. +.+....-+. +-+|+..+.++.|++.|+++++....
T Consensus 34 ~~~~~~~~~~iP~d~i~iD~~w~--~~~g~f~~d~---~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 34 NYAQEIIDNGFPNGQIEIDDNWE--TCYGDFDFDP---TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred HHHHHHHHcCCCCCeEEeCCCcc--ccCCccccCh---hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 44444444333456888887632 1111111222 46789999999999999999886644
No 314
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=48.55 E-value=60 Score=24.99 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=48.2
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
|.++.=+.|..+. .+ .+++...+-+..|+..|++.+++=|..+ . +...++++|+...|..
T Consensus 3 k~~VIK~GG~~~~------~~----~l~~~~~~di~lL~~~G~~~VvVHGggp-~-I~~~l~~~gie~~f~~ 62 (265)
T COG0548 3 KTIVIKLGGSAME------DE----NLLEAFASDIALLKSVGIRPVVVHGGGP-Q-IDEMLAKLGIEPEFVK 62 (265)
T ss_pred ceEEEEECceeec------Cc----hHHHHHHHHHHHHHHCCCcEEEEeCCch-H-HHHHHHHcCCCCeeeC
Confidence 5678888888886 21 3677788889999999999988887774 4 6999999999987754
No 315
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=48.48 E-value=75 Score=21.00 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=40.6
Q ss_pred cCCcHHHHHHHHHHC---CCeEEEEcCCCC--hhHHHHHHHHcCCCCCCceEEEeccc-----CCCCCCHHHHHHHHHHh
Q 031610 49 LYPHAKGILEALKEK---GIHVAVASRSPA--PDIAKTFLHKLGIHSMFVPMVVIYMY-----TKDSSNASSSESTCAIF 118 (156)
Q Consensus 49 l~~~~~~~L~~L~~~---G~~v~i~T~~~~--~~~~~~~l~~l~l~~~f~~~~~~~~~-----~~~kp~p~~~~~~~~~~ 118 (156)
+.+...+.+..+.+. ++++.+.|+... .. ....+.+.+.+.....+.+.++. ...++.++.+..+++.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~-~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l 136 (166)
T PF04055_consen 58 LHPDFIELLELLRKIKKRGIRISINTNGTLLDEE-LLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERL 136 (166)
T ss_dssp GSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHH-HHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhccccceeeeccccchhHH-HHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHH
Confidence 446667777777665 899999998887 34 45556666643333223222221 11455666666666654
Q ss_pred C
Q 031610 119 H 119 (156)
Q Consensus 119 ~ 119 (156)
.
T Consensus 137 ~ 137 (166)
T PF04055_consen 137 K 137 (166)
T ss_dssp H
T ss_pred H
Confidence 3
No 316
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=48.28 E-value=27 Score=25.92 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.7
Q ss_pred cccCCc-HHHHHHHHHHCCCeEEEEcCCCC
Q 031610 47 PYLYPH-AKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 47 ~~l~~~-~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
+.+.+. ..++++.+++.|+++++.||+..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 345666 45899999999999999999874
No 317
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=48.02 E-value=36 Score=20.15 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=24.3
Q ss_pred ccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHH
Q 031610 16 GQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK 61 (156)
Q Consensus 16 ~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~ 61 (156)
..+.++-..|+||-|+.-.++ . -++|.+..+++.++
T Consensus 18 edNi~~es~iiFDNded~tdS------a----~llp~ie~a~~~~r 53 (65)
T PF06117_consen 18 EDNIDCESDIIFDNDEDKTDS------A----ALLPAIEQARADVR 53 (65)
T ss_pred HcccCCCCCeeecCCCcccch------H----HHHHHHHHHHHHHH
Confidence 356677778999999998872 2 36665555555443
No 318
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=47.41 E-value=68 Score=19.92 Aligned_cols=32 Identities=25% Similarity=0.090 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.++.++..+.+.+.-.. .-.|+++-|||.++
T Consensus 21 ~sL~eL~~K~~~~l~l~~--~~~lvL~eDGT~Vd 52 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC--ISSLVLDEDGTGVD 52 (79)
T ss_pred CCHHHHHHHHHHHcCCCC--ccEEEEecCCcEEc
Confidence 346677777777766532 25699999999997
No 319
>PLN02591 tryptophan synthase
Probab=47.26 E-value=1.2e+02 Score=22.95 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=18.5
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
+++...+..+.+++.|+..+.+-...
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 44667788899999998766555433
No 320
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=47.19 E-value=73 Score=26.45 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEE---ecCCccccccccccccCCCcccC--CcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVF---DLDYTLWPFYCECCYEDEIPYLY--PHAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~f---DlDGTL~~~~~~~~~~~~~~~l~--~~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
||+++|+ +.++.++-... +++ ++||.|.+.+ . .+. ....+-|+.+.++..-++++..-...
T Consensus 179 gD~~eik-~lL~~~Gl~vn----~l~d~~~~d~~~~~~~------~---~~~~g~ts~~~i~~~~~A~~nlv~~~~~g~~ 244 (457)
T TIGR02932 179 GDVVLLK-HYFSEMGVDAN----ILMDTEDFDSPMLPDK------S---IFTHGRTTVEDIADSANAIATLALAKYEGGN 244 (457)
T ss_pred HHHHHHH-HHHHHcCCCEE----EEeccccccCCCCCCc------c---ccCCCCCCHHHHHhhhhCcEEEEEcccchHH
Confidence 5777766 77777764433 333 4667666421 0 121 35678888888887777776543333
Q ss_pred hHHHHHHHHcCCCCC
Q 031610 77 DIAKTFLHKLGIHSM 91 (156)
Q Consensus 77 ~~~~~~l~~l~l~~~ 91 (156)
. ++.+-+++|+...
T Consensus 245 ~-A~~Lee~fGiPy~ 258 (457)
T TIGR02932 245 T-AEFLQETFDVPSI 258 (457)
T ss_pred H-HHHHHHHHCCCee
Confidence 3 4555557887653
No 321
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.09 E-value=60 Score=24.53 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC--CCCCCceEEEecc--cCCCCCCHHHHHHHHHHhC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG--IHSMFVPMVVIYM--YTKDSSNASSSESTCAIFH 119 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~--l~~~f~~~~~~~~--~~~~kp~p~~~~~~~~~~~ 119 (156)
-.++|+.+.+.|.++++-||.+...-+...++.+. -...+....|... .....-+...+..+.+.++
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC
Confidence 45799999999999999998875332566666551 1112222333222 2222233345666666665
No 322
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=47.05 E-value=34 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.....
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 4678899999999999999999887655
No 323
>PRK13938 phosphoheptose isomerase; Provisional
Probab=46.02 E-value=34 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 4678899999999999999999887665
No 324
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=45.90 E-value=19 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.7
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcC
Q 031610 50 YPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
.|.+.++++..+++|.+++.+||
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 37788999999999999988875
No 325
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=45.73 E-value=1.1e+02 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
...+.++|+.+++.|+++.++.|+-.........+..|
T Consensus 56 ~~~~~~~l~~l~~~g~~v~~v~GNHD~~~~~~~~~~~g 93 (241)
T PRK05340 56 AREIAAALKALSDSGVPCYFMHGNRDFLLGKRFAKAAG 93 (241)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCchhhhHHHHHhCC
Confidence 34567788999999999999998765442233445555
No 326
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=45.72 E-value=41 Score=25.44 Aligned_cols=53 Identities=13% Similarity=0.007 Sum_probs=37.3
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.+++-|++.+-|-.+..... .+--........+.|+.+.+.|++++|++|+..
T Consensus 3 ~~~~rillkLsGe~l~g~~~---~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGn 55 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQG---FGIDPEVLDRIANEIKELVDLGVEVAVVVGGGN 55 (238)
T ss_pred cceEEEEEEeecceecCCCC---CCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCH
Confidence 35677999999998863211 011123455677788999999999999998763
No 327
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=45.68 E-value=1.2e+02 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=30.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhc
Q 031610 101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQN 141 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (156)
.....++...+..+++.+++.++++..++ -..+.+.|+..
T Consensus 162 ~~~~~~K~~al~~l~~~~~i~~~~~i~~G-D~~ND~~ml~~ 201 (249)
T TIGR01485 162 LPQGSGKGQALQYLLQKLAMEPSQTLVCG-DSGNDIELFEI 201 (249)
T ss_pred EeCCCChHHHHHHHHHHcCCCccCEEEEE-CChhHHHHHHc
Confidence 44567888899999999999988876544 56668888765
No 328
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=45.57 E-value=62 Score=24.83 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=29.4
Q ss_pred cccCCcHHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCCC
Q 031610 47 PYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
+.+.+...++++.+++.|+ .+.+.||+....-....+...|++
T Consensus 67 Pll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~ 110 (302)
T TIGR02668 67 PLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLD 110 (302)
T ss_pred cccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCC
Confidence 4567888899999999998 899999886422122334444543
No 329
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=45.51 E-value=87 Score=25.58 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=52.1
Q ss_pred HHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
..+|+.-+..... ++++.=+.|.++. . . .+ +...+-|..|++.|++++++-|+. +. +...++++|
T Consensus 5 ~~~~~~~i~~~~~--~~~ViK~GG~~~~------~-~---~~-~~~~~~i~~l~~~g~~~vlVHGgg-~~-i~~~~~~~g 69 (429)
T TIGR01890 5 FREAAPYINAHRG--KTFVVGLGGELVE------G-G---NL-GNIVADIALLHSLGVRLVLVHGAR-PQ-IERILAARG 69 (429)
T ss_pred HhhhhHHHHHhCC--CEEEEEEChhhcc------C-c---cH-HHHHHHHHHHHHCCCcEEEEcCCC-HH-HHHHHHHcC
Confidence 3455555555544 6788889998885 1 1 12 457778888999999999999888 44 699999999
Q ss_pred CCCCCc
Q 031610 88 IHSMFV 93 (156)
Q Consensus 88 l~~~f~ 93 (156)
+...|.
T Consensus 70 ~~~~~~ 75 (429)
T TIGR01890 70 RTPHYH 75 (429)
T ss_pred CCceee
Confidence 987664
No 330
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.96 E-value=81 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=33.6
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
+.++-+.+..=.+..+.+|.+-+- + +....-+. ..+|+..+.++.|+++|+++++-.
T Consensus 47 ~~i~~~~~~~iP~d~~~iD~~~~~-~-~~~f~~d~---~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 47 EVIDRYRSNGIPLDVIWIDDDYQD-G-YGDFTWDP---ERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp HHHHHHHHTT--EEEEEE-GGGSB-T-TBTT-B-T---TTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHcCCCccceeccccccc-c-cccccccc---ccccchHHHHHhHhhCCcEEEEEe
Confidence 444444444445677888888432 1 11111222 477899999999999999988765
No 331
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=44.86 E-value=40 Score=23.74 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
.+-++++...+.|++++|+||++. +.+.++....+
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~---ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTL---ARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHH---HHHHHHHhCCC
Confidence 466788888899999999999983 67888877665
No 332
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=44.85 E-value=80 Score=22.63 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.=+..++..+.........+.+|+..+ -..+. .+. .....-+.++++.+++.|++.+|-|+...
T Consensus 71 ~Qa~~f~~~~~~~~~~~~~i~lDiE~~-~~~~~---~~~--~~~~~~~~~f~~~~~~~G~~~~iYt~~~~ 134 (196)
T cd06416 71 GQVQTFLQYLKANGIKYGTVWIDIEQN-PCQWS---SDV--ASNCQFLQELVSAAKALGLKVGIYSSQYD 134 (196)
T ss_pred HHHHHHHHHHHhCCCceeEEEEEEecC-CCCCc---CCH--HHHHHHHHHHHHHHHHhCCeEEEEcCcch
Confidence 333444455544333344577899864 01000 111 12334566788888888999999998763
No 333
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=44.76 E-value=38 Score=22.31 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=25.2
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++| ...+-+.|+++|+.+.++|.... ...++..|+.
T Consensus 12 v~P-~lala~~L~~rGh~V~~~~~~~~----~~~v~~~Gl~ 47 (139)
T PF03033_consen 12 VYP-FLALARALRRRGHEVRLATPPDF----RERVEAAGLE 47 (139)
T ss_dssp HHH-HHHHHHHHHHTT-EEEEEETGGG----HHHHHHTT-E
T ss_pred HHH-HHHHHHHHhccCCeEEEeecccc----eecccccCce
Confidence 445 45677899999999999998773 4445777764
No 334
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=44.62 E-value=57 Score=27.35 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=43.2
Q ss_pred HHHHHhcc--CCCCCceEE-EecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 10 EALEIIGQ--FENLPRLVV-FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 10 ~~~~~~~~--~~~~~k~i~-fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
+.++.+.. ..+++|+|| ||=-=-|++ ... ..+.+.+.+.++..|++|+-+++||=++..- =..++..+
T Consensus 241 ELfe~LPEvGD~dkPklVfFfDEAHLLF~------da~--kall~~ieqvvrLIRSKGVGv~fvTQ~P~Di-P~~VL~QL 311 (502)
T PF05872_consen 241 ELFEQLPEVGDLDKPKLVFFFDEAHLLFN------DAP--KALLDKIEQVVRLIRSKGVGVYFVTQNPTDI-PDDVLGQL 311 (502)
T ss_pred HHHHhCccCCCCCCceEEEEEechhhhhc------CCC--HHHHHHHHHHHHHhhccCceEEEEeCCCCCC-CHHHHHhh
Confidence 44455544 344677765 565444554 111 2455667778888999999999999777443 35555555
Q ss_pred C
Q 031610 87 G 87 (156)
Q Consensus 87 ~ 87 (156)
|
T Consensus 312 G 312 (502)
T PF05872_consen 312 G 312 (502)
T ss_pred h
Confidence 4
No 335
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.33 E-value=46 Score=22.54 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCC-eEEEEcC-CCChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKEKGI-HVAVASR-SPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~~G~-~v~i~T~-~~~~~~~~~~l~~l~l~~~f 92 (156)
+.++++.|+++|. .+.++-| ..... -...+.++|++.+|
T Consensus 70 ~~~~~~~L~~~g~~~i~vivGG~~~~~-~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 70 VPALRKELDKLGRPDILVVVGGVIPPQ-DFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCChH-hHHHHHHCCCCEEE
Confidence 4556666666654 2222233 23333 35556677766555
No 336
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=44.23 E-value=41 Score=30.83 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=40.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~ 96 (156)
++-+.+...|+.|.++++|.+.|||.+.-+ +--+.++.|+-.....++
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllT-aisVakeCgmi~p~~~v~ 752 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLT-AISVAKECGMIEPQVKVI 752 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchhe-eeehhhcccccCCCCeEE
Confidence 577899999999999999999999999887 688888888877665544
No 337
>CHL00199 infC translation initiation factor 3; Provisional
Probab=43.25 E-value=82 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=33.2
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
......+-+.|-||+.+. +.+ +.+||+.+++.|.-++.++..+.
T Consensus 21 ~I~~~~VrlI~~~G~~lG-------------v~~-~~eAl~~A~~~~lDLVeVs~~a~ 64 (182)
T CHL00199 21 RIRFPKVRVIDDSGEQLG-------------IFT-SEQAIQLAANQGLDLVLVSEKSD 64 (182)
T ss_pred ccCCCEEEEECCCCcCCC-------------cee-HHHHHHHHHHcCCCEEEECCCCC
Confidence 333456677888888774 333 78999999999999999986543
No 338
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=43.04 E-value=21 Score=24.80 Aligned_cols=36 Identities=22% Similarity=0.006 Sum_probs=26.1
Q ss_pred EEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEE
Q 031610 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVA 70 (156)
Q Consensus 26 ~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~ 70 (156)
+.|-||||+= ..+ .+..|+.-+++.+++.+.++.++
T Consensus 61 V~DsDgTlI~------~~g---~l~GGt~lT~~~a~~~~KP~l~i 96 (145)
T PF12694_consen 61 VRDSDGTLIF------TRG---ELTGGTALTVEFARKHGKPCLHI 96 (145)
T ss_dssp HHTSSEEEEE------ESS---S--HHHHHHHHHHHHTT--EEEE
T ss_pred hhhcCeEEEE------ecC---CCCcHHHHHHHHHHHhCCCEEEE
Confidence 4588999884 333 57789999999999999999888
No 339
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=42.67 E-value=20 Score=19.54 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 54 ~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
.++.+.|.+.|++.+.+|...+.- ..+.+..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~v-y~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKL-YEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHH-HHHHHHH
Confidence 467788999999999999888765 4555544
No 340
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=42.53 E-value=1.5e+02 Score=22.94 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=30.8
Q ss_pred CceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcC
Q 031610 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
...+.+|.|=.--..+....-+. ..+|...++++.|++.|+++++...
T Consensus 40 ~d~~~lD~~w~~~~~~~~f~~d~---~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 40 CDVIHLDCFWMKEFQWCDFEFDP---DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred eeEEEEecccccCCcceeeEECc---ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 45677887543111101111222 4778899999999999999988764
No 341
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=42.52 E-value=1.5e+02 Score=22.43 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
+.++-+.+..=....+.+|.|=.--..+....-+. .-+|...+.++.|+++|+++++.+....
T Consensus 28 ~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~---~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 28 EVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDA---GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHHHHHHcCCCccEEEECcccccCCceeeeecCh---hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 44444444333456788887533111111001111 4678999999999999999999887664
No 342
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=42.01 E-value=36 Score=31.71 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=39.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
++-+|+.+.|+.|+++|+|+=+.||--.++ +-.+.-..++...-..
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ET-AiNIg~sC~Ll~~~m~ 696 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQET-AINIGYSCRLLRQDMK 696 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHH-HHHHHHhhcCCCCCce
Confidence 688999999999999999999999999888 7888878776554333
No 343
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=41.87 E-value=1e+02 Score=22.57 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCeEEEEc----CCCChhHHHHHHH
Q 031610 53 AKGILEALKEKGIHVAVAS----RSPAPDIAKTFLH 84 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T----~~~~~~~~~~~l~ 84 (156)
..+.++.+.++|+++|++| +++... .+...+
T Consensus 138 ~~~~~~~~~~~~~~~c~VSpELh~~~~~~-~~~~~~ 172 (192)
T cd08584 138 DNDLILKLLKAGKKICLVSPELHGRDHLA-EWEAKQ 172 (192)
T ss_pred CHHHHHHHHHCCcEEEEECHHHcCCChHH-HHHHHH
Confidence 4577888889999999999 666544 344333
No 344
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.84 E-value=37 Score=24.72 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 3668899999999999999999988665
No 345
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=25 Score=26.79 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=29.1
Q ss_pred ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 42 YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 42 ~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.++..-..+.+.+.++.+++.|+.+++.||+....
T Consensus 90 SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 90 SGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred ECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 456555567788999999999999999999987543
No 346
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=40.93 E-value=30 Score=25.41 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=39.4
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
.++.=+.|+++.. .. .. ++...+.|..+.+.|.+++|+++... . +...++..++...+
T Consensus 2 ~~ViK~GGs~l~~------~~--~~-~~~~~~~i~~l~~~g~~vvvV~g~g~-~-~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 2 TIVIKLGGSSLTD------KD--EE-LRELADDIALLSQLGIKVVVVHGGGS-F-TDELLEKYGIEPKF 59 (242)
T ss_dssp EEEEEE-HHGHSS------HS--HH-HHHHHHHHHHHHHTTSEEEEEESSHH-H-HHHHHHHCTHTTSE
T ss_pred eEEEEECchhhCC------ch--HH-HHHHHHHHHHHHhCCCeEEEEECChh-h-cCchHHhccCCccc
Confidence 4555667777751 11 12 45677788888899999999998874 4 58888887766544
No 347
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=40.74 E-value=18 Score=30.02 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=12.1
Q ss_pred CCCCceEEEecCCcccc
Q 031610 19 ENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~ 35 (156)
-+.++++.||+|-||..
T Consensus 9 l~~i~~iGFDmDyTLa~ 25 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLAR 25 (448)
T ss_dssp CCC--EEEE-TBTTTBE
T ss_pred cccCCEEEECcccchhh
Confidence 35689999999999996
No 348
>PRK10126 tyrosine phosphatase; Provisional
Probab=40.47 E-value=1e+02 Score=21.03 Aligned_cols=55 Identities=9% Similarity=-0.035 Sum_probs=29.7
Q ss_pred eEEEEcCCC-ChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCC
Q 031610 66 HVAVASRSP-APDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 66 ~v~i~T~~~-~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~ 122 (156)
.++|||++. ++.+++.+++.+.-. +.....+-......|-......+++..|++.
T Consensus 5 iLFVC~gN~cRSpmAEa~~~~~~~~--~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 60 (147)
T PRK10126 5 ILVVCVGNICRSPTAERLLQRYHPE--LKVESAGLGALVGKGADPTAISVAAEHQLSL 60 (147)
T ss_pred EEEEcCCcHhHHHHHHHHHHHhcCC--eEEEeeeccCCCCCCCCHHHHHHHHHcCCCc
Confidence 578898664 455578888876532 2222222111123344445556667778764
No 349
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.44 E-value=1.3e+02 Score=23.84 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=34.8
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcH--HHHHHHHHHCCCeEEEEcC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA--KGILEALKEKGIHVAVASR 72 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~--~~~L~~L~~~G~~v~i~T~ 72 (156)
+.++.+....=.+..|.+|+|=. +.+....-+. ..+|.- .+.++.|+++|+++++...
T Consensus 28 ~~~~~~r~~~iP~d~i~lD~~~~--~~~~~f~~d~---~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 28 EVVENMRAAGIPLDVQWNDIDYM--DRRRDFTLDP---VRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred HHHHHHHHhCCCcceEEECcccc--cCccceeccc---ccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 44444444333456678887622 1111111122 356777 9999999999999888764
No 350
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.33 E-value=1.5e+02 Score=21.99 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=10.9
Q ss_pred ceEEEecCCcccc
Q 031610 23 RLVVFDLDYTLWP 35 (156)
Q Consensus 23 k~i~fDlDGTL~~ 35 (156)
.+++.|+|||+-.
T Consensus 45 ~l~ivDldga~~g 57 (228)
T PRK04128 45 KIHVVDLDGAFEG 57 (228)
T ss_pred EEEEEECcchhcC
Confidence 5788999999865
No 351
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=40.21 E-value=40 Score=25.53 Aligned_cols=29 Identities=7% Similarity=-0.101 Sum_probs=24.6
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 34668889999999999999999987665
No 352
>PTZ00333 triosephosphate isomerase; Provisional
Probab=40.12 E-value=1.7e+02 Score=22.36 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.-+.+-++++.+.|...++|-|-..
T Consensus 109 ~~I~~Kv~~al~~gl~pIlCvGE~~ 133 (255)
T PTZ00333 109 EIVAQKVKNALENGLKVILCIGETL 133 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4455567788899999999999874
No 353
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=40.04 E-value=1.4e+02 Score=23.61 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc-CCCChhHHHHHHHHc
Q 031610 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTFLHKL 86 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T-~~~~~~~~~~~l~~l 86 (156)
.++|.+++..+.+....+|+=+-|-++. .|.++.|..|-++|+.=+|+| +... .+.+.+.+
T Consensus 40 l~~A~~i~~~ml~d~~~ifL~~tg~mvs---------------~Glr~ii~~Li~~~~VD~iVtTgani---~hD~~~~l 101 (312)
T PRK01221 40 IVRASEILKEMISDADLRFLSFTANLVS---------------TGLRGLIADLIKRGLFNVVITTCGTL---DHDIARSF 101 (312)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecchhHH---------------HHHHHHHHHHHHcCCeeEEEeCCCch---HHHHHHHc
Confidence 4578888877644333566666555553 568899999999986555555 5552 24556666
Q ss_pred CC
Q 031610 87 GI 88 (156)
Q Consensus 87 ~l 88 (156)
|.
T Consensus 102 g~ 103 (312)
T PRK01221 102 GG 103 (312)
T ss_pred CC
Confidence 55
No 354
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.03 E-value=1.1e+02 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHhccCCCCCceEEEecCCcccc----ccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWP----FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~----~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
+.++-+....=...++.+|+|=.=.+ .+....-+. ..+|.-.++++.|+++|+++++....
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~---~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDR---KAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEecc---ccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 45555555444567788887621100 000111112 47788999999999999999987743
No 355
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.87 E-value=1.4e+02 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
..+.++.|++.|+++++--=+.... ....+..+.+
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~-~~~~l~~l~~ 169 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYS-SLSYLKRLPV 169 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHH-HHHHHHhCCC
Confidence 4488999999999999875333222 2445555543
No 356
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=39.81 E-value=63 Score=23.66 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.2
Q ss_pred ccCCc-HHHHHHHHHHCCCeEEEEcCCC
Q 031610 48 YLYPH-AKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 48 ~l~~~-~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.+.+. ..++++.+++.|+++.+.||+.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 45566 4589999999999999999994
No 357
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=39.51 E-value=45 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+||...+.
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3678999999999999999999988665
No 358
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=39.09 E-value=50 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.....
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 3668899999999999999999988665
No 359
>PRK13936 phosphoheptose isomerase; Provisional
Probab=38.98 E-value=51 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.....
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s~ 151 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGGK 151 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 3668889999999999999999877555
No 360
>PRK10658 putative alpha-glucosidase; Provisional
Probab=38.97 E-value=1.3e+02 Score=26.35 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 9 ~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.+.++-+....=...++.+|++=.=-..|....-+. .-+|.-.+.+++|+++|+++++..+..
T Consensus 286 ~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~---~~FPdp~~mi~~L~~~G~k~~~~i~P~ 348 (665)
T PRK10658 286 NSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDP---RTFPDPEGMLKRLKAKGLKICVWINPY 348 (665)
T ss_pred HHHHHHHHHcCCCceEEEEchhhhcCCceeeeEECh---hhCCCHHHHHHHHHHCCCEEEEeccCC
Confidence 345555554333457788887511000111111112 467888999999999999999887653
No 361
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.96 E-value=1.5e+02 Score=23.19 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHhccCCCCCceEEEecCCccc-cc-cccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLW-PF-YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~-~~-~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
+.++-+....=...+|.+|.+=+-. .. +....-+. ..+|...++++.|+++|+++++....
T Consensus 33 ~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~---~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 33 EFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNK---DRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred HHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCc---ccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 4444444443345678888643211 00 11111111 57899999999999999999875543
No 362
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=38.12 E-value=46 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.+.++++..+++|+.++..||++.-.
T Consensus 123 ~nVl~Ai~~Ak~~gm~vI~ltG~~GG~ 149 (176)
T COG0279 123 KNVLKAIEAAKEKGMTVIALTGKDGGK 149 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 456667777777777777777666544
No 363
>PRK15482 transcriptional regulator MurR; Provisional
Probab=38.07 E-value=52 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=24.9
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLADSP 222 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 44678899999999999999999988665
No 364
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=38.06 E-value=63 Score=23.30 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=27.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
+...|...|++.+++|+-.. +++.+.++|+....
T Consensus 108 l~~~L~~~g~~w~vfTaT~~---lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 108 LAQLLAQQGFEWVVFTATRQ---LRNLFRRLGLPPTV 141 (179)
T ss_pred HHHHHHHCCCCEEEEeCCHH---HHHHHHHcCCCcee
Confidence 34667899999999998873 68999999987554
No 365
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=37.41 E-value=71 Score=28.35 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=35.9
Q ss_pred CCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEcCCCChhHHHHHH
Q 031610 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 19 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T~~~~~~~~~~~l 83 (156)
..+.+++++|.|+|++. +.. ......|+.|.... -.+.|++++.+.. .....
T Consensus 500 ~s~~rli~ldyd~t~~~------~~~------~~~~~~l~~L~~dp~n~v~i~s~~~r~~-l~~~~ 552 (732)
T KOG1050|consen 500 KSKKRLILLDYDLTLIP------PRS------IKAISILKDLCSDPKNIVYIVSGRGRSV-LEKWF 552 (732)
T ss_pred hccceEEEecccccccC------CCC------chHHHHHHHHhcCCCCeEEEEEccCchh-hhhhc
Confidence 34678999999999986 222 11777888876654 5778888888766 34443
No 366
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=37.19 E-value=1.8e+02 Score=23.32 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=32.9
Q ss_pred cCCcHHHHHHHHHHCCCeEEEE----------c-CCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 49 LYPHAKGILEALKEKGIHVAVA----------S-RSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~----------T-~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
..|-+.++++.+++.|+.-+++ | |.+... .+..++..+...-+.+.++
T Consensus 138 ~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~-l~r~~r~~~~~~~~~wsiI 196 (395)
T KOG1321|consen 138 AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNE-LWRQFREDGYERDIKWSII 196 (395)
T ss_pred cCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHH-HHHHHHhcCcccCCceEee
Confidence 5678899999999999754443 3 444444 5777777777666665544
No 367
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=36.92 E-value=12 Score=23.79 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=23.6
Q ss_pred HHHHHHHCCCeEEEEc-CCCChhHHHHHHHHcCC
Q 031610 56 ILEALKEKGIHVAVAS-RSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T-~~~~~~~~~~~l~~l~l 88 (156)
.+..+++++.++++=. ++.....+..+++++|.
T Consensus 13 ~~~~~~~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 13 ILEAIKKSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HHHHHHHTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred chhhcccCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3556778899998844 55555557888888887
No 368
>PLN02512 acetylglutamate kinase
Probab=36.79 E-value=1.8e+02 Score=22.76 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=46.6
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++..-|..... +.++.=+.|+++. + . .......+-+..|++.|.+++++=|..+ . +...++++++.
T Consensus 37 ~~~pyi~~~~~--~tiVIKlGGs~i~------d-~---~~~~~~~~di~~l~~~g~~iVlVHGgG~-~-i~~~~~~~gi~ 102 (309)
T PLN02512 37 EALPFIQRFRG--KTVVVKYGGAAMK------D-P---ELKAGVIRDLVLLSCVGLRPVLVHGGGP-E-INSWLKKVGIE 102 (309)
T ss_pred HHhHHHHHHCC--CeEEEEECCeecc------C-h---hHHHHHHHHHHHHHHCCCCEEEEECCcH-H-HHHHHHHcCCC
Confidence 33333334443 5688889999885 1 1 1334466666688899999988888664 4 68888899987
Q ss_pred CCC
Q 031610 90 SMF 92 (156)
Q Consensus 90 ~~f 92 (156)
..|
T Consensus 103 ~~~ 105 (309)
T PLN02512 103 PQF 105 (309)
T ss_pred CcC
Confidence 655
No 369
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.35 E-value=33 Score=26.40 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=31.8
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
.+.+|+.+++..|++.++++.+.|.+-..- ++.++++..
T Consensus 138 ~lReg~~~ff~~L~~~~IP~~iFSAGigdi-iEev~~q~~ 176 (298)
T KOG3128|consen 138 ALREGYEEFFEALQAHEIPLLIFSAGIGDI-IEEVTRQKL 176 (298)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecchHHH-HHHHHHHHh
Confidence 477889999999999999999999888665 566666543
No 370
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=36.09 E-value=2e+02 Score=24.70 Aligned_cols=76 Identities=18% Similarity=0.389 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHH
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~ 81 (156)
|.+++++++..+.... ..+.+++|+.. .+.++. .-..-..+..+.++++|+++.++.-+ .. ...
T Consensus 457 ~~~~~~~~~i~~~~~~---~~~~~il~~~~--v~~iD~--------ta~~al~~~~~~~~~~g~~~~i~~~~--~~-~~~ 520 (554)
T COG0659 457 GNADRLERALLGLIEE---RPERVILDLKS--VPYIDA--------SAAEALEDLIKELERRGIQLLIVGLS--AQ-VLR 520 (554)
T ss_pred eeHHHHHHHHHHHHhc---cCCEEEEEccc--CCcCCh--------hHHHHHHHHHHHHHHcCCEEEEeccc--hh-hHH
Confidence 4567777655555444 56778888876 222111 12223445777888999999988755 23 466
Q ss_pred HHHHcCCCCCCc
Q 031610 82 FLHKLGIHSMFV 93 (156)
Q Consensus 82 ~l~~l~l~~~f~ 93 (156)
.+++.+......
T Consensus 521 ~l~~~~~~~~i~ 532 (554)
T COG0659 521 LLRRAGLLYLVG 532 (554)
T ss_pred HHHHhccccccc
Confidence 777776655443
No 371
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=35.91 E-value=1.3e+02 Score=20.12 Aligned_cols=56 Identities=4% Similarity=-0.162 Sum_probs=25.7
Q ss_pred EEEEcCCC-ChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCc
Q 031610 67 VAVASRSP-APDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 67 v~i~T~~~-~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
++|||++. ++.+++.+++.+.-. -+.....+-......|-......+++..|++..
T Consensus 2 LFVC~~N~cRSpmAEa~~~~~~~~-~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~ 58 (140)
T smart00226 2 LFVCTGNICRSPMAEALFKAIVGD-RVKIDSAGTGAWVGGGADPRAVEVLKEHGIALS 58 (140)
T ss_pred EEEeCChhhhHHHHHHHHHHhcCC-CEEEEcCcccCCCCCCCCHHHHHHHHHcCcCcc
Confidence 56787553 444567777665411 121111111111233344445556666677543
No 372
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=35.77 E-value=64 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.|.+.++++.++++|.+++.+|+.+...
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4679999999999999999999888665
No 373
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=35.73 E-value=1.1e+02 Score=23.95 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.6
Q ss_pred cccCCcHHHHHHHHHH-CCC-eEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 47 PYLYPHAKGILEALKE-KGI-HVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~-~G~-~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+.+.++..+.++.+++ .|+ .+.+.||+..-.-....+.+.|++.
T Consensus 70 Pll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~ 115 (334)
T TIGR02666 70 PLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKR 115 (334)
T ss_pred ccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCe
Confidence 3567889999999887 688 8999998864221233445556543
No 374
>PRK11778 putative inner membrane peptidase; Provisional
Probab=35.63 E-value=2.3e+02 Score=22.61 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCeEEEEcCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
+...|.+++++|.+++++-+..
T Consensus 143 a~~~l~~lr~~~kpVva~v~~~ 164 (330)
T PRK11778 143 AASQLQRLRDAGIPLTVAVDKV 164 (330)
T ss_pred HHHHHHHHHhcCCCEEEEECCc
Confidence 4456777888888887765544
No 375
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=35.48 E-value=1.1e+02 Score=23.16 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 54 ~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
.+.|..|++.|+.|+-++...... =...++.||+.
T Consensus 199 ~~iI~~l~~~g~~VvAivsD~g~~-N~~~w~~Lgi~ 233 (236)
T PF12017_consen 199 KNIIEKLHEIGYNVVAIVSDMGSN-NISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHCCCEEEEEECCCCcc-hHHHHHHcCCC
Confidence 457778888887766555444433 36666777764
No 376
>PLN02825 amino-acid N-acetyltransferase
Probab=35.42 E-value=1.5e+02 Score=25.17 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
+++.-+..... |.++.=+.|-.+.. ..++....-|..|+..|++++++=|..+ . +...+++.|+.
T Consensus 7 ~a~pYI~~~rg--ktfVIk~gG~~l~~-----------~~~~~l~~DialL~~lGi~~VlVHGggp-q-I~~~l~~~gi~ 71 (515)
T PLN02825 7 EAWPYIQGHRG--STFVVVISGEVVAG-----------PHLDNILQDISLLHGLGIKFVLVPGTHV-Q-IDKLLAERGRE 71 (515)
T ss_pred hhhHHHHHHCC--CEEEEEECchhhcC-----------chHHHHHHHHHHHHHCCCCEEEEcCCCH-H-HHHHHHHcCCC
Confidence 44444444443 55777788988851 1346677888899999999999998874 4 69999999998
Q ss_pred CCCce
Q 031610 90 SMFVP 94 (156)
Q Consensus 90 ~~f~~ 94 (156)
..|..
T Consensus 72 ~~f~~ 76 (515)
T PLN02825 72 PKYVG 76 (515)
T ss_pred ceeeC
Confidence 87753
No 377
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=35.34 E-value=1.3e+02 Score=25.03 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEec---CCccccccccccccCCCcccCC--cHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDL---DYTLWPFYCECCYEDEIPYLYP--HAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDl---DGTL~~~~~~~~~~~~~~~l~~--~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
||+++|+ +.++.|+-... ++||+ ||.|.+. . ...++ ...+-|+.+.++..-++++......
T Consensus 175 ~D~~ei~-~lL~~~Gl~v~----~~~d~~~~d~~~~~~-------~--~~~~~g~~~~~~i~~~~~A~~niv~~~~~~~~ 240 (454)
T cd01973 175 GDVVELK-HYLSEMDVEAN----ILMDTEDFDSPMLPD-------K--SAVTHGNTTIEDIADSANAIATIALARYEGGK 240 (454)
T ss_pred HHHHHHH-HHHHHcCCCEE----EeeccccccCCCCCc-------c--cccCCCCCCHHHHHHhhhCcEEEEEChhhhHH
Confidence 6777777 77777764333 55665 4444431 0 11222 3667888888886666665432323
Q ss_pred hHHHHHHHHcCCCCC
Q 031610 77 DIAKTFLHKLGIHSM 91 (156)
Q Consensus 77 ~~~~~~l~~l~l~~~ 91 (156)
. ++.+-+++|+...
T Consensus 241 ~-A~~Le~~fGiPyi 254 (454)
T cd01973 241 A-AEFLQKKFDVPAI 254 (454)
T ss_pred H-HHHHHHHHCCCee
Confidence 2 4555557787653
No 378
>PRK02947 hypothetical protein; Provisional
Probab=35.23 E-value=48 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.+.+.++++.++++|.+++.+|+...
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 36688999999999999999998763
No 379
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=35.18 E-value=59 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.....
T Consensus 102 t~~~~~~~~~ak~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 102 AKELDLIIPRLEDKSIALLAMTGKPTSP 129 (321)
T ss_pred cHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3668899999999999999999987665
No 380
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.08 E-value=1.1e+02 Score=23.99 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=29.7
Q ss_pred cccCCcHHHHHHHHHHCCC--eEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 47 PYLYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~--~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+.+.++..++++.+++.+. .+.+.||+..-.-....+...|++.
T Consensus 72 Pllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~ 117 (329)
T PRK13361 72 PLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKR 117 (329)
T ss_pred CCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCe
Confidence 4577889999999988764 7899999864221234445556553
No 381
>PRK14566 triosephosphate isomerase; Provisional
Probab=35.01 E-value=2.1e+02 Score=21.98 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=21.9
Q ss_pred ccCCcHHH----HHHHHHHCCCeEEEEcCCCC
Q 031610 48 YLYPHAKG----ILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 48 ~l~~~~~~----~L~~L~~~G~~v~i~T~~~~ 75 (156)
..+..+.+ -++.+.+.|...++|-|.+.
T Consensus 108 ~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtl 139 (260)
T PRK14566 108 RMYGETSNIVAEKFAAAQKHGLTPILCVGESG 139 (260)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 45565666 67788899999999998864
No 382
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=34.38 E-value=1.4e+02 Score=19.85 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=32.4
Q ss_pred CcHHHHHHH-HHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEE
Q 031610 51 PHAKGILEA-LKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (156)
Q Consensus 51 ~~~~~~L~~-L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~ 96 (156)
+.+.++++. +.+..+-++++|-..... +...+++.. ..+..++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~-i~~~I~~~~--~~~PaIi 89 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEM-IRHAVDAHT--RSIPAVL 89 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHH-hHHHHHhcC--CcCCEEE
Confidence 467889988 788889999999887666 577777765 4555554
No 383
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=34.31 E-value=61 Score=20.71 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+...++.+.++++|+.++.+|..+... ....++..++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~-~~~~~~~~~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEE-IKQFLEEYGL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHH-HHHHHHHHTC
T ss_pred hHHHHHhhhhccceEEeeecccccccc-hhhhhhhhcc
Confidence 445566677778899999999888777 6888888773
No 384
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=34.13 E-value=2.3e+02 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=16.1
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEc
Q 031610 49 LYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
+.+.+.+++++|+++|+.+.+-|
T Consensus 235 i~~~~~~ai~~L~~aGi~v~~qt 257 (331)
T TIGR00238 235 ITEEFAEAMKKLRTVNVTLLNQS 257 (331)
T ss_pred CCHHHHHHHHHHHHcCCEEEeec
Confidence 45667777777777777766555
No 385
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=34.09 E-value=34 Score=23.62 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
.|-+.=+..+|+++|+++.|+.|.+ +.++++--+...+.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npA----A~kLl~vaDPe~~Y 51 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPA----ALKLLEVADPEKHY 51 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HH----HHHHHHHHSTT-SS
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHH----HHhHhhhcCCccch
Confidence 3445557789999999999887765 57777766655543
No 386
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.92 E-value=1.8e+02 Score=22.85 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=35.6
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
+.++-+.+..=....|.+|+|-+ +.+....-+. ..+|...+.++.|+++|+++.+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~--~~~~~f~~d~---~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 28 EIADEFRERDIPCDAIYLDIDYM--DGYRVFTWDK---ERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred HHHHHHHHhCCCcceEEECchhh--CCCCceeecc---ccCCCHHHHHHHHHHCCCEEEEEE
Confidence 44444444433456788887743 2222111122 477889999999999999998654
No 387
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.62 E-value=74 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCeEEEEc----CCCChhHHHHHHHHcCCCCC
Q 031610 53 AKGILEALKEKGIHVAVAS----RSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T----~~~~~~~~~~~l~~l~l~~~ 91 (156)
..++++.++++|+++.+-| .+.... .+.+-.+|++..
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~--~~~l~~~Gvdgi 252 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEED--YKVYLELGVDCI 252 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHH--HHHHHHcCCCEE
Confidence 4578899999999999998 444343 444557776543
No 388
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=33.56 E-value=1.1e+02 Score=19.39 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=28.7
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCC-CeEEEEc
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVAS 71 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G-~~v~i~T 71 (156)
.|+|--||+.+-.. .......-.+...+.++.|++.| .++.+|.
T Consensus 38 ~v~~~g~gv~~~~~----~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~ 82 (122)
T PF02635_consen 38 VVFFHGDGVKLALK----DQKPNPEGDPPLQELLKELKEAGGVKIYVCE 82 (122)
T ss_dssp EEEE-GGGGGGGBT----TCHCGGCTSHCHHHHHHHHHHTTT-EEEEEH
T ss_pred EEEEEchHHHHHHh----cccccccccccHHHHHHHHHhcCCcEEEEcH
Confidence 38888889976421 00111234567889999999997 9999994
No 389
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=33.48 E-value=3.3e+02 Score=23.90 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=21.5
Q ss_pred ccCCcHHHHH----HHHHHCCCeEEEEcCCC
Q 031610 48 YLYPHAKGIL----EALKEKGIHVAVASRSP 74 (156)
Q Consensus 48 ~l~~~~~~~L----~~L~~~G~~v~i~T~~~ 74 (156)
..+..+.+.+ +.+.+.|...++|-|-+
T Consensus 494 ~~f~Etd~~V~~K~~~al~~GL~pIvCVGEt 524 (645)
T PRK13962 494 QYFGETDELVNKKVLAALKAGLTPILCVGET 524 (645)
T ss_pred CCcCcchHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4556666666 78889999999999876
No 390
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=33.08 E-value=74 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
..+.|.+..|++.|.++.++|++.... -...++
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~-G~qrLr 67 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAF-GRQRLR 67 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhh-hHHHhh
Confidence 457789999999999999999988655 444443
No 391
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=33.07 E-value=66 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
.....+.+..|+++|+.++++|++.
T Consensus 30 l~~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 30 LEELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHHHhCCCEEEEEccch
Confidence 3456678899999999999999887
No 392
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=33.06 E-value=1e+02 Score=19.06 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcccc
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~ 35 (156)
+.+++++..+.+.+.-... .-.|+++-|||.++
T Consensus 21 ~sL~eL~~K~~~~l~l~~~-~~~l~L~eDGTeVt 53 (77)
T cd06535 21 KNLKELLRKGCRLLQLPCA-GSRLCLYEDGTEVT 53 (77)
T ss_pred CCHHHHHHHHHHHhCCCCC-CcEEEEecCCcEeh
Confidence 3567777777777664433 33588999999884
No 393
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=32.91 E-value=1.2e+02 Score=20.56 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.7
Q ss_pred CCceEEEecCCccccccccccccCCCcc--cCCcHHHHHHHHHHCCCeEEEEc
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPY--LYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~--l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
..--|||=.||+... +.+..+. -++...+.++.+.++|.++-+|-
T Consensus 33 ~~v~iFly~DgV~~~------~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~ 79 (126)
T COG1553 33 ELVRLFLYQDGVHNG------NKGQKPASDEFNLIQAWLELLTEQGVPVKLCV 79 (126)
T ss_pred eEEEEEEeecccccc------ccCCCCcccccchHHHHHHHHHHcCCcEeeeH
Confidence 344589999999875 3333333 55667888888999999888874
No 394
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=32.71 E-value=81 Score=20.45 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=39.5
Q ss_pred ceEEEecCCccc-cccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 23 RLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 23 k~i~fDlDGTL~-~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
+.+++|+.++=. | +.+ ..-...+++.++..|.+++++.-++ . +...+...|++..|
T Consensus 45 ~~ivIDls~v~~~d------S~g-----l~~L~~~~~~~~~~g~~~~l~~i~p--~-v~~~~~~~gl~~~~ 101 (117)
T COG1366 45 RGLVIDLSGVDFMD------SAG-----LGVLVALLKSARLRGVELVLVGIQP--E-VARTLELTGLDKSF 101 (117)
T ss_pred cEEEEECCCCceec------hHH-----HHHHHHHHHHHHhcCCeEEEEeCCH--H-HHHHHHHhCchhhc
Confidence 349999988733 3 111 1224457788899998988886555 3 68888999998877
No 395
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=32.66 E-value=1.3e+02 Score=20.03 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeE
Q 031610 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHV 67 (156)
Q Consensus 20 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v 67 (156)
..+..+.||.-|.... ..+..+++.+++.|+.+
T Consensus 87 ~gi~~v~fdr~~~~y~---------------grv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 87 KGIAKVVFDRGGYKYH---------------GRVKALADGAREGGLEF 119 (119)
T ss_dssp TTSSEEEECTSTSSSS---------------SHHHHHHHHHHHTTCB-
T ss_pred cCCcEEEEcCCCCccc---------------HHHHHHHHHHHHcCCCC
Confidence 4567899998766553 23667888899999864
No 396
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=32.53 E-value=70 Score=24.83 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEecCCc
Q 031610 4 LEKVKNEALEIIGQFENLPRLVVFDLDYT 32 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGT 32 (156)
..||..+|++.+....+.+-.+-||+||-
T Consensus 216 I~~Vme~a~~~v~~~~~rpihlSfDvDg~ 244 (318)
T KOG2965|consen 216 IQKVMEMAMELVNPGTRRPIHLSFDVDGF 244 (318)
T ss_pred HHHHHHHHHHHhcCCCccceeEEEecCCc
Confidence 46899999999998887777899999996
No 397
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=32.44 E-value=84 Score=22.83 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
..+.++.++++|+++.+-|-+.... .+.+..+|.+..+
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~~~--~~~~~~~Gvd~i~ 216 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDPDD--MQRYLAMGVDGII 216 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHcCCCEEe
Confidence 3478999999999999999766554 4555577766543
No 398
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=32.15 E-value=74 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.0
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
...+..++.++.+++.|+++.+++++.
T Consensus 54 s~t~Qlr~~~~~A~~~G~~~~Lvv~~~ 80 (87)
T PF15649_consen 54 SLTKQLRDYVKYAKENGYRFNLVVNHR 80 (87)
T ss_pred cchHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 566778888999999999999999854
No 399
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.14 E-value=92 Score=24.49 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEe----cCCccccccccccccCCCcccCCcHHHHHHHHH----HCCCeEEEEcCC
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFD----LDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRS 73 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fD----lDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~----~~G~~v~i~T~~ 73 (156)
|+-+|.+++.++.-.. .+-=+|||| +-|+=+|.... .++ .+---+.+++..|- +.++++..+|||
T Consensus 253 gegarmvrelf~mart--kkaciiffdeidaiggarfddg~g--gdn---evqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 253 GEGARMVRELFEMART--KKACIIFFDEIDAIGGARFDDGAG--GDN---EVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred hhhHHHHHHHHHHhcc--cceEEEEeeccccccCccccCCCC--CcH---HHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 6667888777765332 222347777 33444442111 111 23334556666663 456999999999
Q ss_pred CCh
Q 031610 74 PAP 76 (156)
Q Consensus 74 ~~~ 76 (156)
+..
T Consensus 326 pdt 328 (435)
T KOG0729|consen 326 PDT 328 (435)
T ss_pred CCC
Confidence 954
No 400
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=31.97 E-value=1.2e+02 Score=22.14 Aligned_cols=41 Identities=7% Similarity=-0.147 Sum_probs=29.7
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcCceeEeeehhhhHHHhhcc
Q 031610 101 YTKDSSNASSSESTCAIFHFHPKRSCSIFMFQQVMIEMFQNR 142 (156)
Q Consensus 101 ~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 142 (156)
.....+++..+..++++++++++++..++ -+.+.+.|+...
T Consensus 154 ~~~~~~K~~al~~l~~~~g~~~~~~i~~G-D~~nD~~ml~~~ 194 (236)
T TIGR02471 154 LPLRASKGLALRYLSYRWGLPLEQILVAG-DSGNDEEMLRGL 194 (236)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEEc-CCccHHHHHcCC
Confidence 34457888999999999999988765433 345577777654
No 401
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.74 E-value=1.2e+02 Score=18.68 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=27.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
++.-|..+.++.+++...+++++.+...+. ..+.+..+
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~ 48 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPR-LTEKVEAL 48 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHH
Confidence 467789999999987777777777666565 45555443
No 402
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=31.46 E-value=1.8e+02 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=15.2
Q ss_pred ccCCcHHHHHHHHHHCC
Q 031610 48 YLYPHAKGILEALKEKG 64 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G 64 (156)
.+.+|-.++|+++++.|
T Consensus 13 l~H~GHi~~L~~A~~lg 29 (150)
T cd02174 13 LFHYGHANALRQAKKLG 29 (150)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 57889999999999988
No 403
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=31.42 E-value=2.1e+02 Score=20.98 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
..+.++|+.|.+.|+++.++.|+-........++..|+
T Consensus 55 ~~~~~~l~~L~~~~~~v~~v~GNHD~~~~~~~~~~~gi 92 (231)
T TIGR01854 55 RSVAQAIRQVSDQGVPCYFMHGNRDFLIGKRFAREAGM 92 (231)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCchhhhHHHHHHCCC
Confidence 45677889998889999999988654422233455553
No 404
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=31.29 E-value=2.5e+02 Score=21.75 Aligned_cols=80 Identities=6% Similarity=0.090 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHh--CCCCcCceeEee
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIF--HFHPKRSCSIFM 130 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~--~~~~~~~~~v~~ 130 (156)
+++++.....+|.+++=++-..... .-.+++.+.... .-+++.+++.... +.-..|+.+-..+ ++......+++|
T Consensus 102 VKA~~~e~~~~glrLVEV~k~dl~~-Lp~l~~~Lr~~~-~kFIlFcDDLSFe-~gd~~yK~LKs~LeG~ve~rP~NVl~Y 178 (287)
T COG2607 102 VKALLNEYADEGLRLVEVDKEDLAT-LPDLVELLRARP-EKFILFCDDLSFE-EGDDAYKALKSALEGGVEGRPANVLFY 178 (287)
T ss_pred HHHHHHHHHhcCCeEEEEcHHHHhh-HHHHHHHHhcCC-ceEEEEecCCCCC-CCchHHHHHHHHhcCCcccCCCeEEEE
Confidence 5667788888888888777666555 355555554332 2233333332221 1223344433333 355555666777
Q ss_pred ehhhh
Q 031610 131 FQQVM 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
+|.+-
T Consensus 179 ATSNR 183 (287)
T COG2607 179 ATSNR 183 (287)
T ss_pred EecCC
Confidence 77653
No 405
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=31.06 E-value=1.3e+02 Score=19.48 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=27.9
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
...-|..++++.++....+++|+.++.+.. .+..++..
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~-~k~~ieyY 56 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKE-LKEDIEYY 56 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHH-HHHHHHHH
Confidence 344578899999988777777777666676 57777665
No 406
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=30.96 E-value=1.3e+02 Score=22.90 Aligned_cols=69 Identities=29% Similarity=0.289 Sum_probs=46.4
Q ss_pred HHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 9 ~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+++++-|..... ++++.=+.|+.+.. . .......+-+..+++.|.+++++-|.. .. +...++++++
T Consensus 3 ~~~~~yi~~~~~--~~~ViKlGGs~i~~-------~---~~~~~~~~~i~~l~~~g~~~ViVhG~g-~~-~~~~l~~~g~ 68 (279)
T cd04250 3 IEALPYIQKFRG--KTVVIKYGGNAMKD-------E---ELKESFARDIVLLKYVGINPVVVHGGG-PE-INEMLKKLGI 68 (279)
T ss_pred hhhhHHHHHHcC--CEEEEEEChHHhcC-------c---cHHHHHHHHHHHHHHCCCCEEEEcCCc-HH-HHHHHHHCCC
Confidence 455555555554 56888899999851 1 123345566667788898888888775 44 5888888887
Q ss_pred CCC
Q 031610 89 HSM 91 (156)
Q Consensus 89 ~~~ 91 (156)
...
T Consensus 69 ~~~ 71 (279)
T cd04250 69 ESE 71 (279)
T ss_pred CCE
Confidence 653
No 407
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=30.84 E-value=60 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=24.4
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 87 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSPNSS 87 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence 34678899999999999999999876554
No 408
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=30.75 E-value=51 Score=29.88 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
++-|.+++.|+.|.+++++++-+||.++-+ +-.+.+.+++..
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDnpLT-AchVak~v~iv~ 716 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDNPLT-ACHVAKEVGIVE 716 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCCccc-hheehheeeeec
Confidence 477899999999999999999999999877 788888887654
No 409
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.73 E-value=1.3e+02 Score=19.22 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=28.0
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
.+.-|..++++.+++...+++++++..++. ..+.+..+
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~ 53 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKD-IKEDIEYY 53 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHH
Confidence 466788999999988778888888776666 45555444
No 410
>PRK05279 N-acetylglutamate synthase; Validated
Probab=30.33 E-value=2.9e+02 Score=22.57 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
++.++++.-+..... +.++.=+.|..+.. . .+ ....+-|..|++.|++++|+=|+. +. +...+++
T Consensus 11 ~~~~~~~~~i~~~~~--~~~VIk~GG~~l~~-------~---~~-~~~~~~i~~l~~~g~~~VlVHGgg-~~-i~~~~~~ 75 (441)
T PRK05279 11 DWFRHSAPYINAHRG--KTFVIMLGGEAIAH-------G---NF-SNIVHDIALLHSLGIRLVLVHGAR-PQ-IEEQLAA 75 (441)
T ss_pred HHHHHHhHHHHHhCC--CEEEEEECchhccC-------h---hH-HHHHHHHHHHHHCCCeEEEECCCC-HH-HHHHHHH
Confidence 344455544444443 46777899988851 1 12 456778888899999999998886 44 6999999
Q ss_pred cCCCCCCc
Q 031610 86 LGIHSMFV 93 (156)
Q Consensus 86 l~l~~~f~ 93 (156)
+|+...|.
T Consensus 76 ~g~~~~~~ 83 (441)
T PRK05279 76 RGIEPRYH 83 (441)
T ss_pred cCCCceec
Confidence 99887553
No 411
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.15 E-value=58 Score=20.39 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
++.+..+.|.+.|++++ +|++. .+.+++.|+.
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~gT-----a~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATEGT-----AKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEHHH-----HHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-EChHH-----HHHHHHcCCC
Confidence 35677888888998875 66555 4456677765
No 412
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=30.12 E-value=54 Score=25.09 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.5
Q ss_pred CcccCCcH-HHHHHHHHHCCCeEEEEcCCCC
Q 031610 46 IPYLYPHA-KGILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 46 ~~~l~~~~-~~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.+.+.+.. .++++.+++.|+.+.+.||+..
T Consensus 135 EPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 135 EPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 34567775 5899999999999999999864
No 413
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=29.94 E-value=1.1e+02 Score=25.37 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEec---CCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhH
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDL---DYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI 78 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDl---DGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~ 78 (156)
||+++|+ +.++.++-... ++||+ ||-|.+.+. ....-....+-|+++.++..-++++.......
T Consensus 182 ~D~~elk-~lL~~~Gl~v~----~l~d~~s~d~~~~~~~~-------~~~~gg~tleei~~~~~A~lniv~~~~~g~~~- 248 (461)
T TIGR02931 182 GDVKELK-HLLEEMDIEAN----VLFEIESFDSPLMPDKS-------AVSHGSTTIEDLTDTANAKGTIALNRYEGMKA- 248 (461)
T ss_pred hhHHHHH-HHHHHcCCceE----EeeccccccCCCCCccc-------ccCCCCCcHHHHHhhccCcEEEEEcHhhHHHH-
Confidence 6777777 77777764332 66775 444443100 00011236677888888776666664323232
Q ss_pred HHHHHHHcCCCCC
Q 031610 79 AKTFLHKLGIHSM 91 (156)
Q Consensus 79 ~~~~l~~l~l~~~ 91 (156)
++.+-+++|+...
T Consensus 249 A~~Lee~~giP~~ 261 (461)
T TIGR02931 249 ADYLQKKFDVPAI 261 (461)
T ss_pred HHHHHHHhCCCee
Confidence 4555557777543
No 414
>KOG1415 consensus Ubiquitin C-terminal hydrolase UCHL1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=92 Score=23.10 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCCc-CceeEeeehhhhHHH
Q 031610 104 DSSNASSSESTCAIFHFHPK-RSCSIFMFQQVMIEM 138 (156)
Q Consensus 104 ~kp~p~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 138 (156)
...+|+.+...+.++|+.++ ++.-|+..++....|
T Consensus 8 LEsNPEv~n~~l~klGv~~~~~~~DVy~ldee~L~~ 43 (222)
T KOG1415|consen 8 LESNPEVLNPFLHKLGVAGEWSVVDVYGLDEESLEF 43 (222)
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEEeeecChhhhhh
Confidence 45567777777777777763 344445555555444
No 415
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.46 E-value=71 Score=24.16 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=36.4
Q ss_pred eEEEecCCccccccccccccCCCcccCCcHHHHHHHHH-HCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK-EKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 24 ~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~-~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+-++|+|-|+.. + ..+..++..+. +.|+.++|-|++.....++...++.+-..++..
T Consensus 82 i~IIdLdqT~~~-------------L-r~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~ 139 (251)
T KOG0832|consen 82 IHIIDLDQTASY-------------L-RRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRK 139 (251)
T ss_pred cEEEecHHHHHH-------------H-HHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeee
Confidence 468899999774 1 12455555554 567888888888766656666666665444444
No 416
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=29.46 E-value=1.1e+02 Score=23.14 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCC-eEEEEcCCCChhHHHHHHHHcCC
Q 031610 53 AKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 53 ~~~~L~~L~~~G~-~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
....|+.|.+.|+ .++++|++-....+...+.++++
T Consensus 34 i~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 34 IYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred HHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCc
Confidence 4568899999997 68888866555557888888775
No 417
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.44 E-value=73 Score=21.61 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=8.4
Q ss_pred CcHHHHHHHHHHCCC
Q 031610 51 PHAKGILEALKEKGI 65 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~ 65 (156)
+.+.++++.|+++|.
T Consensus 65 ~~~~~~~~~l~~~gl 79 (128)
T cd02072 65 IDCKGLREKCDEAGL 79 (128)
T ss_pred HHHHHHHHHHHHCCC
Confidence 345556666666654
No 418
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.39 E-value=64 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.9
Q ss_pred CCCCCceEEEecCCcccc
Q 031610 18 FENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~ 35 (156)
.+...++-+||-||+|+-
T Consensus 15 ~Pt~~RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLA 32 (112)
T ss_pred CCCCceEEEECCCCCEEe
Confidence 444789999999999984
No 419
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=29.34 E-value=1.3e+02 Score=21.36 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHC-CCeEEEEcCCCC
Q 031610 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPA 75 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~-G~~v~i~T~~~~ 75 (156)
.+.++..+....... .+++|+..+--. +. ......+.++++.++++ |++.+|-|+...
T Consensus 70 A~~f~~~~~~~~~~~-~~~lD~E~~~~~------~~---~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 70 AENFYNTIKGKKMDL-KPALDVEVNFGL------SK---DELNDYVLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred HHHHHHhccccCCCC-CeEEEEecCCCC------CH---HHHHHHHHHHHHHHHHHHCCCeEEEecHHH
Confidence 334444444432222 478899876211 11 12345677899999988 999999998874
No 420
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=62 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.2
Q ss_pred CCcHHHHHHHHHHHhccCCCCCceEEEec
Q 031610 1 MGDLEKVKNEALEIIGQFENLPRLVVFDL 29 (156)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~k~i~fDl 29 (156)
||+-||+++-.++.-+...+ .+||+|=
T Consensus 207 mGESEkLVknLFemARe~kP--SIIFiDE 233 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKP--SIIFIDE 233 (439)
T ss_pred hccHHHHHHHHHHHHHhcCC--cEEEeeh
Confidence 79999999999998666555 5588874
No 421
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.26 E-value=82 Score=24.05 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=28.5
Q ss_pred cCCccccccccccccCCCcccCCcHH----HHHHHHHHCCCeEEEEcCCCC
Q 031610 29 LDYTLWPFYCECCYEDEIPYLYPHAK----GILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 29 lDGTL~~~~~~~~~~~~~~~l~~~~~----~~L~~L~~~G~~v~i~T~~~~ 75 (156)
.+++|+.| +.+. ..+..+. +-++.+++.|...++|.|.+.
T Consensus 89 ~~~viiGH-----SERR--~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl 132 (251)
T COG0149 89 AKYVLIGH-----SERR--LYFGETDELIAKKVKAAKEAGLTPILCVGETL 132 (251)
T ss_pred CCEEEECc-----cccc--cccccchHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 45666664 4443 4455555 577788899999999999886
No 422
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=29.23 E-value=88 Score=19.04 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCCCCceEEEecCCc---cccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 18 FENLPRLVVFDLDYT---LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 18 ~~~~~k~i~fDlDGT---L~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
..+-...+++|+++- ++... .+.. .....+-....+.|.+.|..+.||.+=. .. +...|...|+.-+
T Consensus 9 Fg~a~~f~I~d~~~~~~~~v~~~---~~~~--~~~~~~~~~~~~~l~~~~v~~li~~~iG-~~-~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 9 FGRAPYFLIYDVEDGEIKFVENR---NPAC--NEGGGGGDKIAKFLAEEGVDVLICGGIG-EG-AFRALKEAGIKVY 78 (94)
T ss_dssp CTT-SEEEEEEEESSCEEEEEEE---ECEC--CCSSCHSTHHHHHHHHTTESEEEESCSC-HH-HHHHHHHTTSEEE
T ss_pred HCCCCEEEEEEEeCCeEEEEEee---cccc--ccccccchhHHHHHHHcCCCEEEEeCCC-HH-HHHHHHHCCCEEE
Confidence 444567788999853 44311 0000 0111223346677777888887766544 55 5788888887533
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.20 E-value=51 Score=18.05 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=14.6
Q ss_pred cCCcHHHHHHHHHHCCCeE
Q 031610 49 LYPHAKGILEALKEKGIHV 67 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v 67 (156)
+.+.+.+++++|+++|+++
T Consensus 17 lI~~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 17 LISEVKPLLDRLQQAGFRI 35 (48)
T ss_pred ChhhHHHHHHHHHHcCccc
Confidence 3347888888888888877
No 424
>PRK08508 biotin synthase; Provisional
Probab=29.13 E-value=2.6e+02 Score=21.34 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=29.8
Q ss_pred cCCcHHHHHHHHHHCCC--eEEEEcCCCChhHHHHHHHHcCCCCCCceE
Q 031610 49 LYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~--~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~ 95 (156)
.++.+.++++.+++.+. .+..+.|....+ ..+.++.-|++.+...+
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e-~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHLIACNGTASVE-QLKELKKAGIFSYNHNL 120 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEEEecCCCCCHH-HHHHHHHcCCCEEcccc
Confidence 33567788888888753 444444666566 57777788887765543
No 425
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=28.96 E-value=83 Score=20.90 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.++++.|+++|+.+.+++.+....
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~~ 42 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKDP 42 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TTS
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 4567888999999999998776443
No 426
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.84 E-value=87 Score=24.39 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.|.+.++++.+++.|.+++.+|+.+...
T Consensus 144 T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 144 TPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4679999999999999999999887665
No 427
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=28.78 E-value=1.2e+02 Score=19.89 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
+.++++...+.|.++.++|+..... ..+++.+|
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~G--~~L~~~~g 103 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEEG--EQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHHH--HHHHHCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCCccH--HHHHhcCC
Confidence 5678889999999999999887543 55546553
No 428
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=28.60 E-value=70 Score=24.73 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=35.6
Q ss_pred CceEEEecCCccccccccccccC--CCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHH
Q 031610 22 PRLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (156)
Q Consensus 22 ~k~i~fDlDGTL~~~~~~~~~~~--~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~ 85 (156)
.|.|++=+-+.++.. .++ -.........+.|..|+++|++++++|++.... ....+..
T Consensus 8 ~~~iVvKiGss~lt~-----~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~-G~~~l~~ 67 (284)
T cd04256 8 AKRIVVKLGSAVVTR-----EDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAF-GKQRLRH 67 (284)
T ss_pred CCEEEEEeCchhccC-----CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHh-ChHHhhh
Confidence 356777775555531 111 001123456678888889999999999887655 4555543
No 429
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=28.56 E-value=1.8e+02 Score=22.58 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=31.6
Q ss_pred cCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
=.||+..+-+.|++.|.++.++|......++...++..+..
T Consensus 61 GP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 61 GPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQ 101 (291)
T ss_pred ChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhC
Confidence 35789988899999999999999887655456666666553
No 430
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=28.52 E-value=70 Score=22.20 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHCCCeEEEEcC
Q 031610 51 PHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
|...++++.+++.|.+++.|+-
T Consensus 91 ~sl~eLl~~a~e~GVk~~AC~m 112 (148)
T PF13686_consen 91 PSLEELLEMAKELGVKFYACSM 112 (148)
T ss_dssp --HHHHHHHHHHCCEEEEEEHH
T ss_pred CCHHHHHHHHHHCCCEEEEehh
Confidence 4577899999999999999953
No 431
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=28.44 E-value=86 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcC
Q 031610 50 YPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
.+.+.++++.++++|.+++.+|+
T Consensus 188 t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 188 TKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred CHHHHHHHHHHHHcCCeEEEECC
Confidence 46788899999999999999997
No 432
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=28.33 E-value=62 Score=21.33 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=18.3
Q ss_pred cCCcHHHHHHHHHHCCC-eEEEEcC
Q 031610 49 LYPHAKGILEALKEKGI-HVAVASR 72 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~-~v~i~T~ 72 (156)
.+..+.+.++.|+++|+ ++.++|+
T Consensus 97 ~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 97 DYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 56677888888888887 5777775
No 433
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=28.32 E-value=69 Score=24.89 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 107 t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 107 SSEILALIPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 4678899999999999999999887555
No 434
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=28.27 E-value=1.7e+02 Score=19.97 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=29.8
Q ss_pred CeEEEEcCC-CChhHHHHHHHHcCCCCCCceEEEecc--cCCCCCCHHHHHHHHHHhCCCCc
Q 031610 65 IHVAVASRS-PAPDIAKTFLHKLGIHSMFVPMVVIYM--YTKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 65 ~~v~i~T~~-~~~~~~~~~l~~l~l~~~f~~~~~~~~--~~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
..++|||++ -++.+++.+++++--..+. +.+... ..-..++|. ...+++.+|++..
T Consensus 4 kVLFVC~gN~cRSpmAE~l~~~~~~~~~~--v~SAGt~~~~g~~~~~~-a~~vl~e~Gid~~ 62 (139)
T COG0394 4 KVLFVCTGNICRSPMAEALLRHLAPDNVE--VDSAGTGGHPGEPPDPR-AVEVLAEHGIDIS 62 (139)
T ss_pred eEEEEcCCCcccCHHHHHHHHHhccCCeE--EECCccCCCCCCCCCHH-HHHHHHHcCCCcC
Confidence 357889965 3555678888876431111 111111 122334544 4455668888755
No 435
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=28.25 E-value=2.7e+02 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=20.3
Q ss_pred cCCcHHHHHHHHHHCCCeEEE-EcCCCChh
Q 031610 49 LYPHAKGILEALKEKGIHVAV-ASRSPAPD 77 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i-~T~~~~~~ 77 (156)
+++...+.++.+++.|+..+. ||-.....
T Consensus 127 p~ee~~~~~~~~~~~gl~~I~lvap~t~~e 156 (258)
T PRK13111 127 PPEEAEELRAAAKKHGLDLIFLVAPTTTDE 156 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 445677888999999976555 77666443
No 436
>PRK06186 hypothetical protein; Validated
Probab=28.06 E-value=83 Score=23.65 Aligned_cols=43 Identities=12% Similarity=-0.072 Sum_probs=31.2
Q ss_pred EEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCe-EEEEcCCCC
Q 031610 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH-VAVASRSPA 75 (156)
Q Consensus 26 ~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~-v~i~T~~~~ 75 (156)
+-++||.|+..... .+=.+|...+++.+++++++ ++||-|-..
T Consensus 51 l~~~dgilvpgGfg-------~rg~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 51 LAGFDGIWCVPGSP-------YRNDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred HhhCCeeEeCCCCC-------cccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 44678888864331 24557899999999999997 678877663
No 437
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.06 E-value=62 Score=19.81 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSP 74 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~ 74 (156)
....++++.|+++|+++...|...
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347789999999999998877665
No 438
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=28.02 E-value=1.2e+02 Score=22.40 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+....+-|..|++.|.+++++++... . ....++.+++..
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~-~-~~~~~~~~~~~~ 53 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGP-E-INELLEALGIPP 53 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcH-H-HHHHHHHcCCCC
Confidence 45566777888899999999987774 3 577888888654
No 439
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=27.84 E-value=93 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCccccc
Q 031610 6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~ 36 (156)
+.+.+++..+.-..+. -.+++|.||+++-|
T Consensus 42 ~~a~~~l~~~r~~~~g-Y~fi~d~~g~~l~h 71 (95)
T PF08269_consen 42 QQAREALRALRYGGDG-YFFIYDMDGVVLAH 71 (95)
T ss_dssp HHHHHHHHH--SBTTB---EEE-TTSBEEEE
T ss_pred HHHHHHHhccccCCCC-eEEEEeCCCeEEEc
Confidence 3344444444443333 46888999998865
No 440
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=27.78 E-value=34 Score=23.70 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=31.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
.+..+..++=+.|++.|+.+.+..|.+... ...+.+.+++..
T Consensus 50 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~-l~~l~~~~~~~~ 91 (165)
T PF00875_consen 50 FLLESLADLQESLRKLGIPLLVLRGDPEEV-LPELAKEYGATA 91 (165)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEESSHHHH-HHHHHHHHTESE
T ss_pred HHHHHHHHHHHHHHhcCcceEEEecchHHH-HHHHHHhcCcCe
Confidence 355666667778899999999999998665 577778777443
No 441
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=27.72 E-value=81 Score=19.83 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.1
Q ss_pred cccCCcHHHHHHHHHHCCCeEEEEcC
Q 031610 47 PYLYPHAKGILEALKEKGIHVAVASR 72 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~G~~v~i~T~ 72 (156)
.++.+.=.+.++.|++.|+.+.||.+
T Consensus 73 ~~ls~~Q~~~~~~l~~~G~~v~V~~~ 98 (100)
T PF08774_consen 73 DRLSPNQKEWIDKLREAGFRVAVCRS 98 (100)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEEc
Confidence 37889889999999999999999965
No 442
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=27.70 E-value=1e+02 Score=24.57 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=26.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 55 ~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
.++..|.++|+.+.|.+ |.... +..+++..|++..
T Consensus 18 ~~I~eL~~~GheV~it~-R~~~~-~~~LL~~yg~~y~ 52 (335)
T PF04007_consen 18 NIIRELEKRGHEVLITA-RDKDE-TEELLDLYGIDYI 52 (335)
T ss_pred HHHHHHHhCCCEEEEEE-eccch-HHHHHHHcCCCeE
Confidence 68889999999887555 44455 6889998887543
No 443
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.54 E-value=1.4e+02 Score=20.06 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=41.6
Q ss_pred CCCceEEEecC-CccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 20 NLPRLVVFDLD-YTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 20 ~~~k~i~fDlD-GTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
+-+...+.|++ |-+.+.... ++.........-..+.+.|++.|..+.||++=.+. +...|+..|+.-+
T Consensus 22 rap~F~Ivd~e~g~i~~vev~--~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~--a~~~l~~~GIkv~ 90 (121)
T COG1433 22 RAPYFTIVDVEDGEIKNVEVI--ENPAASAEKGAGIRIAELLVDEGVDVVIASNIGPN--AYNALKAAGIKVY 90 (121)
T ss_pred CCceEEEEEecCCcEEEEEEe--ecccccccCcchHHHHHHHHHcCCCEEEECccCHH--HHHHHHHcCcEEE
Confidence 34556777777 333332111 11111123344556788999999999998877644 5888899887543
No 444
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=27.51 E-value=1.1e+02 Score=23.17 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
..+.++.++++|+++.+=|=+.... +..+++.+|++
T Consensus 217 ~~~~v~~~~~~G~~v~vWTVn~~~~-~~~l~~~~GVd 252 (258)
T cd08573 217 SSAYVRYWRARGIRVIAWTVNTPTE-KQYFAKTLNVP 252 (258)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHH-HHHHHHHhCCC
Confidence 3578899999999999999766565 45544338876
No 445
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=27.41 E-value=2.5e+02 Score=20.44 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=21.4
Q ss_pred HHHHHHHHHC--CCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 54 KGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 54 ~~~L~~L~~~--G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
.+.++.+++. +.+++++|+..... .....-..|..++
T Consensus 65 ~eli~~l~~~~~~~~vI~ls~~~~~~-~~~~al~~Ga~~y 103 (239)
T PRK10430 65 LDLLPVLHEAGCKSDVIVISSAADAA-TIKDSLHYGVVDY 103 (239)
T ss_pred HHHHHHHHhhCCCCCEEEEECCCcHH-HHHHHHHcCCCEE
Confidence 3566776654 57899999876554 2322233454443
No 446
>PRK00942 acetylglutamate kinase; Provisional
Probab=27.36 E-value=2.1e+02 Score=21.82 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=41.5
Q ss_pred ceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 23 k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
+.++.=+.|+++.. . ...+...+-+..|++.|.+++++++... . +...++.++....+
T Consensus 24 ~~iViK~GGs~l~~-------~---~~~~~l~~~i~~l~~~g~~vVlVhGgg~-~-~~~~~~~~g~~~~~ 81 (283)
T PRK00942 24 KTIVIKYGGNAMTD-------E---ELKEAFARDIVLLKQVGINPVVVHGGGP-Q-IDELLKKLGIESEF 81 (283)
T ss_pred CeEEEEEChHHhcC-------c---chHHHHHHHHHHHHHCCCCEEEEeCChH-H-HHHHHHHCCCCcEe
Confidence 56788899999851 1 2234466677788899999989988764 4 57788888776543
No 447
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=27.30 E-value=1.3e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
.|...+..+.++++|+.++.++..+... +..+++..++
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~~~~-~~~~~~~~~~ 85 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDSPFS-LRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCHHH-HHHHHHhcCC
Confidence 3445566677777899988888776666 6777887765
No 448
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=27.03 E-value=97 Score=19.16 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHHCCCe
Q 031610 50 YPHAKGILEALKEKGIH 66 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~ 66 (156)
.|.+.++++.|+++|++
T Consensus 44 ~P~i~~~l~~l~~~g~~ 60 (101)
T cd03409 44 GPDTEEAIRELAEEGYQ 60 (101)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57788999999888864
No 449
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=27.01 E-value=87 Score=25.56 Aligned_cols=75 Identities=19% Similarity=0.064 Sum_probs=48.3
Q ss_pred CCCCCceEEEecCCcccccccccc--------------ccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~--------------~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l 83 (156)
..+..++++.|+|.||.-...... ...-...-.|+...++..+.+- +++.+.|+..... +.+++
T Consensus 208 ~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y-~~~v~ 285 (390)
T COG5190 208 STSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKI-HELVYFTASVKRY-ADPVL 285 (390)
T ss_pred CCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhh-EEEEEEecchhhh-cchHH
Confidence 444567888999999986433211 0011112346666666666554 8999999998877 68888
Q ss_pred HHcCCCCCCce
Q 031610 84 HKLGIHSMFVP 94 (156)
Q Consensus 84 ~~l~l~~~f~~ 94 (156)
+-++-...|..
T Consensus 286 d~l~~~k~~~~ 296 (390)
T COG5190 286 DILDSDKVFSH 296 (390)
T ss_pred Hhccccceeeh
Confidence 88776664433
No 450
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=26.99 E-value=94 Score=15.48 Aligned_cols=22 Identities=9% Similarity=0.380 Sum_probs=13.4
Q ss_pred HCCCeEEEEcCCCChhHHHHHHH
Q 031610 62 EKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 62 ~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
+....++|-||+..+. ..+.++
T Consensus 2 ~g~LqI~ISTnG~sP~-la~~iR 23 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPR-LARLIR 23 (30)
T ss_dssp -TTEEEEEEESSS-HH-HHHHHH
T ss_pred CCCeEEEEECCCCChH-HHHHHH
Confidence 3457889999888766 344443
No 451
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=26.93 E-value=1e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
.|.+.++++.++++|.+++.+|+.+...
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4678999999999999999999887655
No 452
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=26.90 E-value=2.7e+02 Score=20.82 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCc
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~ 93 (156)
+...+-|..|++.|++++++=|..+ . ....++++|+..-|.
T Consensus 15 ~~~~~di~~l~~~g~~~VlVHGgg~-~-i~~~~~~~gi~~~~~ 55 (248)
T cd04252 15 DELAASLSFLQHVGLYPIVVHGAGP-Q-LNEELEAAGVEPEYV 55 (248)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCH-H-HHHHHHHcCCCcEee
Confidence 5566777888889999988887774 4 699999999987664
No 453
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=26.89 E-value=52 Score=20.25 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=22.9
Q ss_pred EEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCC
Q 031610 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65 (156)
Q Consensus 25 i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~ 65 (156)
+-||++.+...-.+ .....|.+.+++++|.++|.
T Consensus 15 ~~F~~~S~~~GIKv-------H~dA~p~~i~a~~RLheKGL 48 (77)
T TIGR02647 15 ALFNLSSTQEGIKV-------HSTASPAAVAAAARLHEKGL 48 (77)
T ss_pred HhCCchhhhcCccc-------cccCCHHHHHHHHHHHHcCC
Confidence 45777777654211 12456889999999999984
No 454
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=26.71 E-value=1.5e+02 Score=23.91 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=28.7
Q ss_pred cccCCcHHHHHHHHHHC-CCe-EEEEcCCCChhHHHHHHHHcCCCC
Q 031610 47 PYLYPHAKGILEALKEK-GIH-VAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~~-G~~-v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
+.+.+...++++.+++. |+. +.+.||+..-.-....+...|++.
T Consensus 117 Pllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~ 162 (373)
T PLN02951 117 PTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTS 162 (373)
T ss_pred CcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCe
Confidence 45778888999999885 875 888898864210233344455543
No 455
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=1.2e+02 Score=24.80 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEecCCcc----ccccccccccCCCcccCCcHHHHHHHHH----HCCCeEEEEcCC
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTL----WPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRS 73 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL----~~~~~~~~~~~~~~~l~~~~~~~L~~L~----~~G~~v~i~T~~ 73 (156)
|+=.|++++.++.-....+ ..||+|==.-+ +|... ..++ .+---+.++|+.|- ..+++++-+|||
T Consensus 227 GEGaRlVRelF~lArekaP--sIIFiDEIDAIg~kR~d~~t--~gDr---EVQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 227 GEGARLVRELFELAREKAP--SIIFIDEIDAIGAKRFDSGT--SGDR---EVQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred ccchHHHHHHHHHHhhcCC--eEEEEechhhhhcccccCCC--CchH---HHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 7778999998887554444 56888731111 11100 0111 11112334444442 356899999999
Q ss_pred CCh
Q 031610 74 PAP 76 (156)
Q Consensus 74 ~~~ 76 (156)
+..
T Consensus 300 ~D~ 302 (406)
T COG1222 300 PDI 302 (406)
T ss_pred ccc
Confidence 954
No 456
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.55 E-value=1.5e+02 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
.+++|+.+||.....|.|..-.....+.+..|+...
T Consensus 34 y~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRPp 69 (154)
T PF11909_consen 34 YLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRPP 69 (154)
T ss_pred HHHHHHhcCceEEEecccCCCCHHHHHhccCCCCCC
Confidence 789999999999999988766633333445565543
No 457
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.53 E-value=2.1e+02 Score=19.45 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=27.7
Q ss_pred eEEEEcCCC-ChhHHHHHHHHcCCCCCCceEEEecccCC-CCCCHHHHHHHHHHhCCCC
Q 031610 66 HVAVASRSP-APDIAKTFLHKLGIHSMFVPMVVIYMYTK-DSSNASSSESTCAIFHFHP 122 (156)
Q Consensus 66 ~v~i~T~~~-~~~~~~~~l~~l~l~~~f~~~~~~~~~~~-~kp~p~~~~~~~~~~~~~~ 122 (156)
.++|||++. ++.+++.+++.+.-. +.....+-.... ..++| ....+++..|++.
T Consensus 5 ILfVC~gN~cRSpmAEa~~~~~~~~--~~v~SaG~~~~~g~~~~~-~a~~~l~~~Gid~ 60 (144)
T PRK11391 5 ILVVCTGNICRSPIGERLLRKRLPG--VKVKSAGVHGLVKHPADA-TAADVAANHGVSL 60 (144)
T ss_pred EEEEcCCcHhHHHHHHHHHHHhcCC--eEEEcccccCCCCCCCCH-HHHHHHHHcCCCc
Confidence 578898654 455578888765421 211111111111 23444 4555677778764
No 458
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=26.43 E-value=64 Score=23.59 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=24.1
Q ss_pred cccCCcHHHHHHHHHH-CCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 47 PYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 47 ~~l~~~~~~~L~~L~~-~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+.+.|-..+..++|.+ .|+..+|+||+.....+..+.+..+.
T Consensus 37 IDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a 79 (199)
T PF14597_consen 37 IDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGA 79 (199)
T ss_dssp ES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--
T ss_pred ecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCC
Confidence 3466777889999988 66999999999865446777776654
No 459
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.40 E-value=1.5e+02 Score=19.28 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
+...+..+.++++|+.++-+|...... +...++..++.
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~ 81 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCC
Confidence 344456666777899888888776666 67878877763
No 460
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=26.20 E-value=1.6e+02 Score=18.71 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+....+.|.++|+++..-+...-.. .++.+..+|.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~N~~-~~r~~~~lg~ 75 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDEDNEA-SQRLSKSLGF 75 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhccHH-HHHHHHHCCC
Confidence 4447788999999999888777666 6888888875
No 461
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=26.18 E-value=1.4e+02 Score=18.69 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=26.4
Q ss_pred CcHHHHHHHHH-HCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 51 PHAKGILEALK-EKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 51 ~~~~~~L~~L~-~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
+.+.++++.+. +..+-++++|.+.... ....+.+.
T Consensus 28 ee~~~~l~~l~~~~~~gIIii~e~~~~~-~~~~l~~~ 63 (95)
T PF01990_consen 28 EEAEEALKELLKDEDVGIIIITEDLAEK-IRDELDEY 63 (95)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeeHHHHHH-HHHHHHHH
Confidence 35677888776 7889999999887666 56666665
No 462
>PRK00648 Maf-like protein; Reviewed
Probab=26.03 E-value=1.3e+02 Score=21.88 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChhHHHHHHHHcCCC
Q 031610 64 GIHVAVASRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 64 G~~v~i~T~~~~~~~~~~~l~~l~l~ 89 (156)
+++++++|+++++ ..+|+.+|+.
T Consensus 2 ~~~lILAS~SprR---~elL~~~g~~ 24 (191)
T PRK00648 2 KYKIILASSSPRR---KEILEGFRIP 24 (191)
T ss_pred CCcEEEeCCCHHH---HHHHHHCCCC
Confidence 4788999988854 6678888874
No 463
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=25.93 E-value=1.6e+02 Score=18.79 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCC
Q 031610 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 55 ~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
+....+.++|+++++++-.+... ++...+..++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~ 36 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGF 36 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCC
Confidence 44677888999999999777655 5777665443
No 464
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=25.80 E-value=3.5e+02 Score=22.37 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=30.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEc------CCCChhHHHHHHH---HcCCCCCCce
Q 031610 48 YLYPHAKGILEALKEKGIHVAVAS------RSPAPDIAKTFLH---KLGIHSMFVP 94 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T------~~~~~~~~~~~l~---~l~l~~~f~~ 94 (156)
.+++.+.+++++|+++|+++..=| |..... ...+.+ .+|+..|.-+
T Consensus 229 Eit~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~-l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 229 EITASSKKALAKLADAGIPLGNQSVLLAGVNDCPRI-MKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred hChHHHHHHHHHHHHcCCEEEeeceEECCcCCCHHH-HHHHHHHHHHCCCeeceee
Confidence 578999999999999999876544 333333 233333 4577666544
No 465
>PLN02920 pantothenate kinase 1
Probab=25.74 E-value=3.6e+02 Score=22.15 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=39.6
Q ss_pred CCCCCceEEEecCCccccc-cccccccC------CC--------------cccCCcHHHHHHHHHHC-------------
Q 031610 18 FENLPRLVVFDLDYTLWPF-YCECCYED------EI--------------PYLYPHAKGILEALKEK------------- 63 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~-~~~~~~~~------~~--------------~~l~~~~~~~L~~L~~~------------- 63 (156)
.++.++.+++|+-|||.-. |....... .. ......+.+.++++++.
T Consensus 14 ~~~~~~~~a~Diggsl~Klvy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~~~~~~~~ 93 (398)
T PLN02920 14 SPIQISHLALDIGGSLIKLVYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLHHGGFQHHENP 93 (398)
T ss_pred CccceeEEEEEcCCceEEEEEEeccCCccccccccccccccCCCceEEEEEecccCHHHHHHHHHhcccccccccccccc
Confidence 3445788999999999752 11110000 00 01445677888888754
Q ss_pred --CCeEEEEcCCCChhHHHHHH-HHcCC
Q 031610 64 --GIHVAVASRSPAPDIAKTFL-HKLGI 88 (156)
Q Consensus 64 --G~~v~i~T~~~~~~~~~~~l-~~l~l 88 (156)
....+-+||+.... ....+ +.+++
T Consensus 94 ~~~~~~i~~TGGGA~k-~~~~~~~~~~i 120 (398)
T PLN02920 94 THDKNFIKATGGGAYK-FADLFKEKLGI 120 (398)
T ss_pred CCCceEEEEECCcHHH-HHHHHHhhhCC
Confidence 24667789777544 33344 34444
No 466
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=25.73 E-value=2.4e+02 Score=19.71 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=39.8
Q ss_pred HHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHH
Q 031610 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~ 84 (156)
..++-.++...++ -.+|++|..|-.+++ +.-.+.|+.+...|-.++++=|++.-. ...+.+
T Consensus 53 ~~E~~~il~~~~~-~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~i~FvIGGa~G~-~~~v~~ 113 (153)
T TIGR00246 53 DKEGDRILAAIGK-AHVVTLDIPGKPWTT--------------PQLADTLEKWKTDGRDVTLLIGGPEGL-SPTCKA 113 (153)
T ss_pred HHHHHHHHHhCCC-CeEEEEcCCCCcCCH--------------HHHHHHHHHHhccCCeEEEEEcCCCcC-CHHHHH
Confidence 3344455555443 457899999998872 335577777777887788888887433 244444
No 467
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=25.71 E-value=88 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChh
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~ 77 (156)
+.+.++++.++++|.+++.+|+.....
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 567888899999999999999887665
No 468
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=25.69 E-value=1.2e+02 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
.+-+.+.-++..|++.|..+.++++++.++ ...+..++
T Consensus 51 Hle~kTA~L~~tL~a~GAeV~~~~sNplST-QDdvaAAL 88 (268)
T PF05221_consen 51 HLEAKTAVLAETLKALGAEVRWTGSNPLST-QDDVAAAL 88 (268)
T ss_dssp --SHHHHHHHHHHHHTTEEEEEEESSTTT---HHHHHHH
T ss_pred echHHHHHHHHHHHHcCCeEEEecCCCccc-chHHHHHh
Confidence 355678889999999999999999888776 36665554
No 469
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=25.64 E-value=1.2e+02 Score=22.72 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~ 91 (156)
..+.++.++++|+++.+-|=+.... ...+..+|++..
T Consensus 198 ~~~~v~~~~~~g~~v~~WTvn~~~~--~~~l~~~GVdgI 234 (249)
T PRK09454 198 DEARVAALKAAGLRILVYTVNDPAR--ARELLRWGVDCI 234 (249)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHcCCCEE
Confidence 3578999999999999999666554 344556775543
No 470
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.62 E-value=2.7e+02 Score=22.38 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 56 ~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
+++..++-|+++.+++...... +..++.||-+.+++.
T Consensus 197 aVq~AKAMG~rV~vis~~~~kk--eea~~~LGAd~fv~~ 233 (360)
T KOG0023|consen 197 AVQYAKAMGMRVTVISTSSKKK--EEAIKSLGADVFVDS 233 (360)
T ss_pred HHHHHHHhCcEEEEEeCCchhH--HHHHHhcCcceeEEe
Confidence 6788889999999999887543 677888887776554
No 471
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.59 E-value=2.2e+02 Score=19.28 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.2
Q ss_pred cCCcHHHHHHHHHHCCC-eEEEEcC
Q 031610 49 LYPHAKGILEALKEKGI-HVAVASR 72 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~-~v~i~T~ 72 (156)
.+..+.+.++.|+++|+ ++.++|.
T Consensus 115 ~~~~vv~vmd~~k~aG~~~v~l~t~ 139 (141)
T PRK11024 115 PYDEIIKALNLLHSAGVKSVGLMTQ 139 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEec
Confidence 45668888888888887 5777764
No 472
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=25.58 E-value=96 Score=21.55 Aligned_cols=12 Identities=42% Similarity=0.362 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhc
Q 031610 5 EKVKNEALEIIG 16 (156)
Q Consensus 5 ~~~~~~~~~~~~ 16 (156)
.+++.+++...+
T Consensus 29 akvia~~l~d~G 40 (143)
T COG2185 29 AKVIARALADAG 40 (143)
T ss_pred hHHHHHHHHhCC
Confidence 466667777643
No 473
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=25.40 E-value=44 Score=25.60 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHH
Q 031610 12 LEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE 62 (156)
Q Consensus 12 ~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~ 62 (156)
++.+......-|+|+.|+|.-+..-+- .-....+++||..++.++.-+
T Consensus 144 malIDeGE~DwKiIAIdvnDP~A~~~n---di~DV~~~~Pg~L~~tr~wFr 191 (279)
T KOG1626|consen 144 MALIDEGETDWKIIAIDVNDPLASEYN---DIEDVEKLFPGLLEATRRWFR 191 (279)
T ss_pred eecccCCCccceEEEEECCCcchhhhc---cHHHHHHhCcchHHHHHHHHH
Confidence 444555666779999999999554211 222334688998887766544
No 474
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.05 E-value=2.7e+02 Score=22.23 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=40.5
Q ss_pred HHHHHHHH-CC-CeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEecccCCCCCCHHHHHHHHHHhCCCCcCceeEeeeh
Q 031610 55 GILEALKE-KG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMYTKDSSNASSSESTCAIFHFHPKRSCSIFMFQ 132 (156)
Q Consensus 55 ~~L~~L~~-~G-~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~v~~~~ 132 (156)
++++++.. .+ -.+.++||......+...+..++....-. ++ .+..+ .-..|.+...++....-.+ ++..+++-.
T Consensus 39 ~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-il-lEP~g-RnTApAIA~aa~~~~~~~~-d~~~lVlps 114 (333)
T COG0836 39 QTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-II-LEPEG-RNTAPAIALAALSATAEGG-DALVLVLPS 114 (333)
T ss_pred HHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc-eE-eccCC-CCcHHHHHHHHHHHHHhCC-CcEEEEecC
Confidence 45666655 22 47788898887666677777766665443 22 12222 2223444444444333333 444455555
Q ss_pred hhhH
Q 031610 133 QVMI 136 (156)
Q Consensus 133 ~~~~ 136 (156)
|+.+
T Consensus 115 DH~I 118 (333)
T COG0836 115 DHVI 118 (333)
T ss_pred ccee
Confidence 5544
No 475
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=24.88 E-value=1.3e+02 Score=22.61 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
..+.++.++++|+++.+-|=+.... ...+..+|++..+
T Consensus 212 ~~~~v~~~~~~g~~v~~WTVn~~~~--~~~l~~~GVdgIi 249 (252)
T cd08574 212 SAQEIREYSKANISVNLYVVNEPWL--YSLLWCSGVQSVT 249 (252)
T ss_pred CHHHHHHHHHCCCEEEEEccCCHHH--HHHHHHcCCCEEe
Confidence 3478899999999999999776565 3444567866544
No 476
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=24.86 E-value=2e+02 Score=23.42 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHhc-cCCCCCceEEEecCCccccccccccccCCCcccCCcHH-HHHHHHHHCCCeEEEEcCCCChhHHHHHHHHc
Q 031610 9 NEALEIIG-QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK-GILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (156)
Q Consensus 9 ~~~~~~~~-~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~-~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l 86 (156)
++|.+++. .+.+.-..|++=+-|-++ ..|.+ +.|..|-++|+.=+|+|+..-- ...+.+.+
T Consensus 37 ~~A~~il~~~m~~~~~tvfLtltgami---------------saGLr~~ii~~LIr~g~VD~IVTTGAnl--~hD~~~al 99 (384)
T PRK00770 37 REACQLLAQRMIDDGVTVGLTLSGAMT---------------PAGFGVSALAPLIEAGFIDWIISTGANL--YHDLHYAL 99 (384)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccchh---------------hhhcChHHHHHHHHcCCccEEEcCCccH--HHHHHHHh
Confidence 36666666 544322334555555444 35678 8999999999776666655532 24556666
Q ss_pred CCC
Q 031610 87 GIH 89 (156)
Q Consensus 87 ~l~ 89 (156)
|..
T Consensus 100 g~~ 102 (384)
T PRK00770 100 GLP 102 (384)
T ss_pred CCC
Confidence 533
No 477
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.82 E-value=97 Score=24.27 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.2
Q ss_pred ccCCcHHHHHHHHHHCCCeEEEEcCC
Q 031610 48 YLYPHAKGILEALKEKGIHVAVASRS 73 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~G~~v~i~T~~ 73 (156)
..+|...++++.|+++|+++++....
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 46799999999999999999876643
No 478
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=24.77 E-value=3.3e+02 Score=21.74 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=25.2
Q ss_pred cCCcHHHHHHHHHHCCCeEEEE-cCCCChhHHHHHHHHcCCC
Q 031610 49 LYPHAKGILEALKEKGIHVAVA-SRSPAPDIAKTFLHKLGIH 89 (156)
Q Consensus 49 l~~~~~~~L~~L~~~G~~v~i~-T~~~~~~~~~~~l~~l~l~ 89 (156)
...|.++.|..|-++|+.=+|+ |+... .+.+++.+|..
T Consensus 58 vsaGlr~~i~~Li~~g~VD~iVTTgani---~hD~~~~lg~~ 96 (329)
T PRK00805 58 VPAGMRKIIKWLIRNRYVDVLVSTGANI---FHDIHEALGFK 96 (329)
T ss_pred HHHHHHHHHHHHHHcCCeeEEEeCCCch---HHHHHHHcCCC
Confidence 4467899999999999654444 55553 24566666643
No 479
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=24.73 E-value=37 Score=21.90 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHCC--CeEEEEcCCCCh
Q 031610 51 PHAKGILEALKEKG--IHVAVASRSPAP 76 (156)
Q Consensus 51 ~~~~~~L~~L~~~G--~~v~i~T~~~~~ 76 (156)
+...++++.+++.+ +.+.+.||+...
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 34556666666666 667777766654
No 480
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=24.72 E-value=1.7e+02 Score=17.83 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHHCC---CeEEEEcCCCChhHHHHHHHHcCC
Q 031610 55 GILEALKEKG---IHVAVASRSPAPDIAKTFLHKLGI 88 (156)
Q Consensus 55 ~~L~~L~~~G---~~v~i~T~~~~~~~~~~~l~~l~l 88 (156)
..++.|.++| .++.+++++..+. +..+.+.++.
T Consensus 13 al~~~l~~~g~~~~~v~~~~~r~~~~-~~~~~~~~~~ 48 (96)
T PF03807_consen 13 ALARGLLASGIKPHEVIIVSSRSPEK-AAELAKEYGV 48 (96)
T ss_dssp HHHHHHHHTTS-GGEEEEEEESSHHH-HHHHHHHCTT
T ss_pred HHHHHHHHCCCCceeEEeeccCcHHH-HHHHHHhhcc
Confidence 3567788898 8999888888776 6777777773
No 481
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=24.70 E-value=3.4e+02 Score=22.45 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHH
Q 031610 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l 83 (156)
.++++ +|+.++.+. +..|.|+..+=|-+... + .+..|+.++++.+. -.+++++-=.++......+.+
T Consensus 330 ~~~v~-~a~~ii~~d-~~vk~iliNIfGGI~~c------d----~iA~gii~a~~~~~-~~~pivvRl~Gtn~~~g~~~l 396 (422)
T PLN00124 330 EQQVV-EAFKILTSD-DKVKAILVNIFGGIMKC------D----VIASGIVNAAKQVG-LKVPLVVRLEGTNVDQGKRIL 396 (422)
T ss_pred HHHHH-HHHHHHhcC-CCCcEEEEEecCCccch------H----HHHHHHHHHHHhcC-CCCcEEEEcCCCCHHHHHHHH
Confidence 35665 788887764 55788998888888762 1 34456666666553 346665544443333368888
Q ss_pred HHcCC
Q 031610 84 HKLGI 88 (156)
Q Consensus 84 ~~l~l 88 (156)
+..++
T Consensus 397 ~~~~~ 401 (422)
T PLN00124 397 KESGM 401 (422)
T ss_pred HhCCC
Confidence 87765
No 482
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.67 E-value=94 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCeEEEEc
Q 031610 53 AKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T 71 (156)
+.++++.|+++|++++++=
T Consensus 19 ie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 19 IEKLVRKLKARGYRVATVK 37 (161)
T ss_pred HHHHHHHHHhCCcEEEEEE
Confidence 4478899999999999884
No 483
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.59 E-value=92 Score=20.58 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~ 87 (156)
+.+.+.++.+.+.|.++++.|.+-... ....++.+.
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~-~~~~l~~~a 113 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDE-QIDELEELA 113 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHH-HHHHHHHHT
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHH-HHHHHHHHh
Confidence 566778888889999999999777555 356666654
No 484
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.50 E-value=2.8e+02 Score=21.55 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEEeccc------CCCCCCHHHHHHHHHHhC
Q 031610 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVVIYMY------TKDSSNASSSESTCAIFH 119 (156)
Q Consensus 51 ~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~~~~~------~~~kp~p~~~~~~~~~~~ 119 (156)
++..+.|+.....+|-+-|++.++... +..+.++.++.++..+.-..++. .-.+|.......+.+.+-
T Consensus 198 ~~a~~~lk~~p~~~yTLQl~a~~s~~n-v~~fa~k~~l~~~~vy~t~rnG~pWYvv~~G~YatrqeA~~AvstLP 271 (292)
T COG3266 198 AAASGQLKSAPSSHYTLQLSASGSYDN-VNGFAKKQNLKGYVVYETTRNGKPWYVVVYGNYATRQEAKAAVSTLP 271 (292)
T ss_pred ccchHHHHhCCCCceEEEEecccchHH-HHHHHHhcCCCceEEeEeecCCceeEEEEecCcccHHHHHHHHhhCc
Confidence 566778888888999999999888888 79999999998855442222111 114666666666666654
No 485
>PLN03231 putative alpha-galactosidase; Provisional
Probab=24.36 E-value=3.1e+02 Score=22.11 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 52 HAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 52 ~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
|...+-..++++|.|++|-+.+...
T Consensus 87 G~k~lADyvHs~GLKfGIY~~~G~~ 111 (357)
T PLN03231 87 GFAPIAAKVHALGLKLGIHVMRGIS 111 (357)
T ss_pred CcHHHHHHHHhCCcceEEEecCCcc
Confidence 7999999999999999998866533
No 486
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=24.30 E-value=1.2e+02 Score=23.54 Aligned_cols=41 Identities=22% Similarity=0.067 Sum_probs=24.3
Q ss_pred EecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEE
Q 031610 27 FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVA 68 (156)
Q Consensus 27 fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~ 68 (156)
=|++||+++..+..... ......+...++.+.++++|...+
T Consensus 260 nd~~gt~~~e~v~~~ag-~~~~~~~~~~~l~~~~~~~g~~~~ 300 (309)
T TIGR00423 260 NDLGGTLMEENISKAAG-AKSGVGLTVEELIEAIKDAGRVPA 300 (309)
T ss_pred ccCCcccccceeccccC-CCCCCCCCHHHHHHHHHHcCCCee
Confidence 39999998743321111 111224667777788888886553
No 487
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=24.30 E-value=1.1e+02 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHhcc--CCCCCceEEEecCCcccc
Q 031610 7 VKNEALEIIGQ--FENLPRLVVFDLDYTLWP 35 (156)
Q Consensus 7 ~~~~~~~~~~~--~~~~~k~i~fDlDGTL~~ 35 (156)
..++.++...+ .+..+..++.|.|||++.
T Consensus 14 tL~~kf~~~~~g~~P~sid~~vaDFDgv~yh 44 (301)
T KOG2826|consen 14 TLNEKFENARAGGKPESIDVTVADFDGVLYH 44 (301)
T ss_pred HHHHHHHHHhccCCCcceeEEEeccCceEEE
Confidence 33445555544 456678899999999984
No 488
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.20 E-value=2.9e+02 Score=22.63 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHhccCCCCCceEEEe----cCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc--CCCC
Q 031610 2 GDLEKVKNEALEIIGQFENLPRLVVFD----LDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPA 75 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~k~i~fD----lDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T--~~~~ 75 (156)
||+++|+ +.++.++-.. .++.| +||++++.+.. ...-..+.+-|+++.++..-++++. ....
T Consensus 168 ~D~~ei~-~lL~~~Gl~~----~~~~d~s~~~~~~~~~~~~~-------~~~~g~~~~~i~~~~~A~lniv~~~~~~~g~ 235 (429)
T cd03466 168 ADIREIK-EILREFGIEY----ILLPDTSETLDGPFWGEYHR-------LPSGGTPISEIKGMGGAKATIELGMFVDHGL 235 (429)
T ss_pred hHHHHHH-HHHHHcCCCe----EEecCccccccCCCCCCcce-------eCCCCCCHHHHHhhccCcEEEEEccCccchH
Confidence 5666666 6666665332 24445 68888762110 1122346778888877766676653 1222
Q ss_pred hhHHHHHHHHcCCCC
Q 031610 76 PDIAKTFLHKLGIHS 90 (156)
Q Consensus 76 ~~~~~~~l~~l~l~~ 90 (156)
.. ++..-+++|+..
T Consensus 236 ~~-A~~L~e~~giP~ 249 (429)
T cd03466 236 SA-GSYLEEEFGIPN 249 (429)
T ss_pred HH-HHHHHHHHCCCe
Confidence 22 455556788763
No 489
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.18 E-value=3.3e+02 Score=20.82 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=37.8
Q ss_pred ccCCcHHHHHHHHHHC---CCeEEEEcCCCChhHHHHHHHHcCCCCCCc--eEEEecccCCCCCCHHHHHHHHHHh
Q 031610 48 YLYPHAKGILEALKEK---GIHVAVASRSPAPDIAKTFLHKLGIHSMFV--PMVVIYMYTKDSSNASSSESTCAIF 118 (156)
Q Consensus 48 ~l~~~~~~~L~~L~~~---G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~--~~~~~~~~~~~kp~p~~~~~~~~~~ 118 (156)
.++|...+++++++.- |+.+..+++..... .+.+..+|-+..-. ..+++. . .-.+|+.+..+.+..
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~--ar~l~~~G~~~vmPlg~pIGsg-~--Gi~~~~~I~~I~e~~ 174 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVL--AKRLEDAGCAAVMPLGSPIGSG-Q--GLLNPYNLRIIIERA 174 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHcCCCEeCCCCcCCCCC-C--CCCCHHHHHHHHHhC
Confidence 5777777777776655 99999444444343 45556666544322 222222 2 233577777776653
No 490
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.17 E-value=2.7e+02 Score=19.84 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=45.7
Q ss_pred CCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCce
Q 031610 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (156)
Q Consensus 21 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~ 94 (156)
..|.|+|=+=|-..+.= + . .=.||-++-...|+++|+-.++|=+-..+++...+-+.++-...+.+
T Consensus 43 GKKvIifGvPgAFtPtC----s-~---~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f 108 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTC----S-S---SHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKF 108 (171)
T ss_pred CceEEEEcCCCccCCcc----c-c---ccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEE
Confidence 45788888888777520 1 1 34588999999999999987777655555545677777876655543
No 491
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.92 E-value=3.1e+02 Score=22.17 Aligned_cols=18 Identities=0% Similarity=-0.091 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 031610 104 DSSNASSSESTCAIFHFH 121 (156)
Q Consensus 104 ~kp~p~~~~~~~~~~~~~ 121 (156)
.|--.-.+..+++.++++
T Consensus 265 NKiGTy~lA~~Ak~~~vP 282 (363)
T PRK05772 265 NKIGTFKEAVIAHELGIP 282 (363)
T ss_pred ehhhhHHHHHHHHHhCCC
Confidence 455666667777777754
No 492
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=23.88 E-value=1.8e+02 Score=17.73 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCC
Q 031610 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (156)
Q Consensus 54 ~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~ 90 (156)
..+.+.+.++|....+.....-.. +..+.+++|...
T Consensus 44 ~~l~~~~~~~g~~~~l~v~~~N~~-s~~ly~klGf~~ 79 (86)
T PF08445_consen 44 AALARELLERGKTPFLYVDADNEA-SIRLYEKLGFRE 79 (86)
T ss_dssp HHHHHHHHHTTSEEEEEEETT-HH-HHHHHHHCT-EE
T ss_pred HHHHHHHHhCCCcEEEEEECCCHH-HHHHHHHcCCEE
Confidence 345677888998877666555444 688889998643
No 493
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.85 E-value=1.4e+02 Score=21.88 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f 92 (156)
..+.++.++++|+++.+=|=+.... +... -.+|++..+
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~~-~~~l-~~~GVdgi~ 227 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAED-AKRL-IELGVDSIT 227 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHH-HHHH-HHCCCCEEE
Confidence 4578999999999999999776565 3444 456765543
No 494
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=23.53 E-value=3.6e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHhccCCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEc
Q 031610 10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (156)
Q Consensus 10 ~~~~~~~~~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T 71 (156)
+.+..+....=...+|.+|+|=. +.+..+.-+. ..||.-.++++.|+++|++++...
T Consensus 205 eva~~fre~~IP~DvIwlDidYm--~g~~~FTwD~---~rFPdP~~mv~~Lh~~G~kvv~ii 261 (978)
T PLN02763 205 EIARTFREKKIPCDVVWMDIDYM--DGFRCFTFDK---ERFPDPKGLADDLHSIGFKAIWML 261 (978)
T ss_pred HHHHHHHHcCCCceEEEEehhhh--cCCCceeECc---ccCCCHHHHHHHHHHCCCEEEEEE
Confidence 44445554444467788898732 2222211222 467889999999999999987664
No 495
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=23.44 E-value=67 Score=25.02 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHCCCeEEEEcCCCCh
Q 031610 50 YPHAKGILEALKEKGIHVAVASRSPAP 76 (156)
Q Consensus 50 ~~~~~~~L~~L~~~G~~v~i~T~~~~~ 76 (156)
-+.+.++++.|+++|++.+++|+....
T Consensus 166 ~eda~~a~~~lhq~~v~~vVITS~~~~ 192 (308)
T KOG2599|consen 166 EEDAKRAVEKLHQKGVKTVVITSFDLG 192 (308)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeeC
Confidence 356888999999999999999987643
No 496
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=23.41 E-value=1.1e+02 Score=23.92 Aligned_cols=16 Identities=0% Similarity=-0.031 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHh
Q 031610 103 KDSSNASSSESTCAIF 118 (156)
Q Consensus 103 ~~kp~p~~~~~~~~~~ 118 (156)
..||+|.++..+++.+
T Consensus 231 ~GKP~~~~~~~a~~~l 246 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVL 246 (321)
T ss_pred cCCCChHHHHHHHHHH
Confidence 4799999999998887
No 497
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.35 E-value=1e+02 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.1
Q ss_pred eEEEecCCccc
Q 031610 24 LVVFDLDYTLW 34 (156)
Q Consensus 24 ~i~fDlDGTL~ 34 (156)
.|-.|-||.++
T Consensus 53 ~v~i~~~g~~~ 63 (121)
T TIGR02804 53 LITITADNQLY 63 (121)
T ss_pred EEEEECCCCEE
Confidence 46678888876
No 498
>PRK15492 triosephosphate isomerase; Provisional
Probab=23.33 E-value=3.4e+02 Score=20.73 Aligned_cols=28 Identities=4% Similarity=-0.039 Sum_probs=21.5
Q ss_pred ccCCcHHH----HHHHHHHCCCeEEEEcCCCC
Q 031610 48 YLYPHAKG----ILEALKEKGIHVAVASRSPA 75 (156)
Q Consensus 48 ~l~~~~~~----~L~~L~~~G~~v~i~T~~~~ 75 (156)
..+..+-+ -++.+.+.|+..++|-|-+.
T Consensus 107 ~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~ 138 (260)
T PRK15492 107 HKFGETDQEENAKVLAALKHDFTTLLCVGETL 138 (260)
T ss_pred cccCcchHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 45555666 67778899999999998763
No 499
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=23.32 E-value=1.5e+02 Score=20.85 Aligned_cols=38 Identities=8% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCC-ChhHHHHHHHHcCCCCCC
Q 031610 53 AKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHSMF 92 (156)
Q Consensus 53 ~~~~L~~L~~~G~~v~i~T~~~-~~~~~~~~l~~l~l~~~f 92 (156)
..+.++.+++.|.++.+-|-+. ... +.. +.++|++..+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~~~~~-~~~-l~~~Gvd~i~ 176 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVNDNNEI-INK-FLNLGVDGLI 176 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCChHHH-HHH-HHHcCCCEEe
Confidence 4678899999999999999666 555 344 4467765543
No 500
>PRK10949 protease 4; Provisional
Probab=23.28 E-value=1.3e+02 Score=26.23 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=49.8
Q ss_pred CCCCCceEEEecCCccccccccccccCCCcccCCcHHHHHHHHHHCCCeEEEEcCCCChhHHHHHHHHcCCCCCCceEEE
Q 031610 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVV 97 (156)
Q Consensus 18 ~~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~G~~v~i~T~~~~~~~~~~~l~~l~l~~~f~~~~~ 97 (156)
..+.++.|++|+|+-=-. . ..-...++++|++++++|.+++...... .. ...++.. ..+.++.
T Consensus 109 ~D~rIkgivL~i~s~gG~---------~-~a~~~eI~~ai~~fk~sGKpVvA~~~~~-~s-~~YyLAS-----aAD~I~l 171 (618)
T PRK10949 109 DDRNITGIVLDLKNFAGA---------D-QPSMQYIGKALREFRDSGKPVYAVGDSY-SQ-GQYYLAS-----FANKIYL 171 (618)
T ss_pred cCCCceEEEEEeCCCCCc---------c-HHHHHHHHHHHHHHHHhCCeEEEEecCc-cc-hhhhhhh-----hCCEEEE
Confidence 566899999999753110 0 0112457889999999998877654333 22 2222221 2222221
Q ss_pred ecc--c--CCCCCCHHHHHHHHHHhCCCCc
Q 031610 98 IYM--Y--TKDSSNASSSESTCAIFHFHPK 123 (156)
Q Consensus 98 ~~~--~--~~~kp~p~~~~~~~~~~~~~~~ 123 (156)
... . .-..+..-.+..+++++|+.+.
T Consensus 172 ~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~ 201 (618)
T PRK10949 172 SPQGVVDLHGFATNGLYYKSLLDKLKVSTH 201 (618)
T ss_pred CCCceEEEeeeecchhhHHHHHHHcCCeEE
Confidence 110 0 0123344568889999998765
Done!