BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031612
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AJ5|K Chain K, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|L Chain L, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|M Chain M, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|N Chain N, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|O Chain O, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|P Chain P, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|Q Chain Q, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|R Chain R, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|S Chain S, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|T Chain T, Crystal Structure Of The Ska Core Complex
Length = 123
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 8 HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPI 64
H +D L + K+ +L +QY+LE E + +PD+A NP+ L+ + ++
Sbjct: 2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQT 61
Query: 65 LKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
L + + + +++ + A + + N++Q++Q D+ P+ E + A+
Sbjct: 62 LYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAA 113
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 30 VQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQD-------LIDK 82
+Q + +E ++ D P+KL++ D P +E E A ++ +K
Sbjct: 590 MQEAMTQEVSDVFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATAEK 649
Query: 83 ASAILVRNRNLVQRMQVSLD--------------IPVANESEDASFANFKQVIDEWTVQV 128
A+A+ N+ V+ +Q ++ I + N A++ +F+ + ++W V
Sbjct: 650 AAAVGTANKTTVEGIQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNV 709
Query: 129 RSRTR--DEDHDSNS 141
T DE D+ S
Sbjct: 710 EKMTGLVDEAIDTKS 724
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 64 ILKEQCRELLA-AKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVID 122
+L + C+ +A +QD IDKA A L + + M V LD+ AS FK D
Sbjct: 28 LLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDV--------ASREGFKMAAD 79
Query: 123 E 123
E
Sbjct: 80 E 80
>pdb|1AB0|A Chain A, C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING
Protein At Ph 4.5
Length = 131
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 16 LVNLLTKSNHELTMVQYKLEKEFQQIYPDN 45
LV + ++S H+ T + +KL EF +I D+
Sbjct: 48 LVTIRSESTHKNTEISFKLGVEFDEITADD 77
>pdb|1ACD|A Chain A, V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING
PROTEIN
Length = 131
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 16 LVNLLTKSNHELTMVQYKLEKEFQQIYPDN 45
LV + ++S H+ T + +KL EF +I D+
Sbjct: 48 LVTIRSESTHKNTEISFKLGVEFDEITADD 77
>pdb|1PQ4|A Chain A, Crystal Structure Of Znua
pdb|1PQ4|B Chain B, Crystal Structure Of Znua
Length = 291
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 34 LEKEFQQIYPDN-----ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS-AIL 87
+ KE ++ PDN AN ++ ++++ ++L Q + L ++ ++ S A
Sbjct: 148 IAKELAELDPDNRDQYEANLAAFLAELERLNQEL----GQILQPLPQRKFIVFHPSWAYF 203
Query: 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQVID 122
R+ NLVQ IP+ E ++ S KQ+ID
Sbjct: 204 ARDYNLVQ-------IPIEVEGQEPSAQELKQLID 231
>pdb|2OV1|A Chain A, Crystal Structure Of Apo Form Of Znua With Flexible Loop
Deletion
pdb|2OV3|A Chain A, Crystal Structure Of 138-173 Znua Deletion Mutant Plus
Zinc Bound
Length = 260
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 34 LEKEFQQIYPDN-----ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS-AIL 87
+ KE ++ PDN AN ++ ++++ ++L Q + L ++ ++ S A
Sbjct: 116 IAKELAELDPDNRDQYEANLAAFLAELERLNQEL----GQILQPLPQRKFIVFHPSWAYF 171
Query: 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQVID 122
R+ NLVQ IP+ E ++ S KQ+ID
Sbjct: 172 ARDYNLVQ-------IPIEVEGQEPSAQELKQLID 199
>pdb|2OGK|A Chain A, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|B Chain B, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|C Chain C, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
pdb|2OGK|D Chain D, Crystal Structure Of Protein Af2318 From Archaeglobus
Fulgidus, Pfam Duf54
Length = 146
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 28 TMVQYKLEKEFQQIYPDNANPMKLV-------SRIKKVQEDL-PILKEQCRELLAAKQDL 79
T+ ++ E + NPM+ + S IKK ++L +L EQ E+L+ +D
Sbjct: 30 TLFPFEFEIAVSKAKGHYGNPMEYLEVELTKSSEIKKFWKNLLELLGEQAEEILSTLEDR 89
Query: 80 IDKASAILVR 89
ID+ + + +R
Sbjct: 90 IDEQNVLHIR 99
>pdb|3IBP|A Chain A, The Crystal Structure Of The Dimerization Domain Of
Escherichia Coli Structural Maintenance Of Chromosomes
Protein Mukb
Length = 302
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 50 KLVSRIKKVQEDLPI----------LKEQCRELLAAKQDLIDKASAILVRNRN-LVQRMQ 98
+L SRI+ + + P+ L EQC E + QD+ + +L R R +V+R +
Sbjct: 28 QLQSRIQSLXQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDE 87
Query: 99 VS 100
V
Sbjct: 88 VG 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,182,020
Number of Sequences: 62578
Number of extensions: 149869
Number of successful extensions: 508
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 41
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)