BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031612
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBY0|SKA2_BOVIN Spindle and kinetochore-associated protein 2 OS=Bos taurus GN=SKA2
PE=2 SV=1
Length = 121
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
+D L + K++ +L +QY+LE E + YPD+A NP+ L+ + ++ L +
Sbjct: 5 VDKLELMFQKADSDLDYIQYRLEYEIKTNYPDSAGKKNPVTLLKELSAIKSRYQTLHVRF 64
Query: 70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLD---IPVANESEDAS 113
+ + +++ + A + L+Q +Q D +P+ E + A+
Sbjct: 65 KPIAVEQKETKSRICATFNKTMTLIQELQKETDMELLPLTEEEKTAA 111
>sp|P0CB44|SKA2L_HUMAN Putative spindle and kinetochore-associated protein 2-like OS=Homo
sapiens GN=SKA2L PE=5 SV=1
Length = 121
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
+D L + K+ +L +QY+LE E + +PD+A NP+ L+ + ++ L +
Sbjct: 5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSQYQTLYARF 64
Query: 70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
+ + +++ + A + + N++Q++Q D+ P+ E + A+
Sbjct: 65 KPVAVEQKETKSRICAGMTKTMNVIQKLQKQTDLDLSPLTKEEKTAA 111
>sp|Q8WVK7|SKA2_HUMAN Spindle and kinetochore-associated protein 2 OS=Homo sapiens
GN=SKA2 PE=1 SV=1
Length = 121
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
+D L + K+ +L +QY+LE E + +PD+A NP+ L+ + ++ L +
Sbjct: 5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARF 64
Query: 70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
+ + +++ + A + + N++Q++Q D+ P+ E + A+
Sbjct: 65 KPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAA 111
>sp|Q4R8E8|SKA2_MACFA Spindle and kinetochore-associated protein 2 OS=Macaca fascicularis
GN=SKA2 PE=2 SV=1
Length = 121
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
+D L + K+ +L +QY+LE E + +PD+A NP+ L+ + ++ L +
Sbjct: 5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSALKSRYQTLYARF 64
Query: 70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
+ + +++ + A + + N++Q++Q D+ P+ E + A+
Sbjct: 65 KPVAVEQKETKSRICATVNKTMNVIQKLQKQTDLELSPLTKEEKTAA 111
>sp|P36537|UDB10_HUMAN UDP-glucuronosyltransferase 2B10 OS=Homo sapiens GN=UGT2B10 PE=1
SV=1
Length = 528
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 49 MKLVSRIKKVQED---LPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS-LDIP 104
M+LV R+ ++Q+D LP +EQ E+L A D+I +V N+ L++++Q S DI
Sbjct: 90 MQLVKRLSEIQKDTFWLPFSQEQ--EILWAINDIIRNFCKDVVSNKKLMKKLQESRFDIV 147
Query: 105 VAN 107
A+
Sbjct: 148 FAD 150
>sp|Q03EG0|XPT_PEDPA Xanthine phosphoribosyltransferase OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=xpt PE=3 SV=1
Length = 190
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 5 NFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQ---QIYPDNANPMKLVSRIKKVQED 61
+F N QA+ GL+++ +N ++ V +EK FQ QI D ++ ++RIK + +D
Sbjct: 125 DFLANGQAVSGLLDIADAANIDVVGVGIVIEKTFQKGSQIIKDRDIQLESLARIKALTDD 184
>sp|A4SJD4|SYE_AERS4 Glutamate--tRNA ligase OS=Aeromonas salmonicida (strain A449)
GN=gltX PE=3 SV=1
Length = 471
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 91 RNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R ++ LD + ++ A NF V+D+W +++ R EDH +N+
Sbjct: 157 RGRIEFANTELDDLIIRRTDGAPTYNFCVVVDDWDMEITHVVRGEDHINNT 207
>sp|A0KNT0|SYE_AERHH Glutamate--tRNA ligase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=gltX PE=3 SV=1
Length = 471
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 91 RNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R ++ LD + ++ A NF V+D+W +++ R EDH +N+
Sbjct: 157 RGRIEFANTELDDLIIRRTDGAPTYNFCVVVDDWDMEITHVVRGEDHINNT 207
>sp|Q9PPP0|SYE_UREPA Glutamate--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gltX PE=3 SV=1
Length = 482
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 100 SLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
+L PV +S + NF VID++ +Q+ R E+H SN+
Sbjct: 179 ALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNT 220
>sp|B1AJP0|SYE_UREP2 Glutamate--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=gltX PE=3 SV=1
Length = 482
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 100 SLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
+L PV +S + NF VID++ +Q+ R E+H SN+
Sbjct: 179 ALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNT 220
>sp|Q38UP9|F16PC_LACSS Fructose-1,6-bisphosphatase class 3 OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=fbp PE=3 SV=1
Length = 641
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 38 FQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRM 97
FQ + P+N P L + ++ DL +C++L LID S + N+NL+
Sbjct: 357 FQLVDPEN--PEALTAEESQIIADLLAAFTRCQKLRKHLTFLIDHGSMYRIYNQNLLFHG 414
Query: 98 QVSLD-------IPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSN-SEDINKLLF 149
+ +D + +AN++ KQ++D + Q+RS H +N S D+ L+
Sbjct: 415 CLPVDAQGHFLTLTLANQNYAG-----KQLLDFFDQQIRSSFNHPLHQANLSTDLLWYLW 469
Query: 150 SA 151
+
Sbjct: 470 TG 471
>sp|B5ZCB4|SYE_UREU1 Glutamate--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=gltX PE=3 SV=1
Length = 482
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 100 SLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
+L PV +S + NF VID++ +Q+ R E+H SN+
Sbjct: 179 ALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEHISNT 220
>sp|B2VDY5|SYE_ERWT9 Glutamate--tRNA ligase OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=gltX PE=3 SV=1
Length = 469
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 91 RNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R ++ LD + ++ A NF VID+W +++ R EDH +N+
Sbjct: 157 RGPIEFSNQELDDLIIRRTDGAPTYNFCVVIDDWDMEITHVIRGEDHINNT 207
>sp|Q6D206|SYE_ERWCT Glutamate--tRNA ligase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=gltX PE=3 SV=1
Length = 471
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 89 RNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R R ++ LD + ++ + NF VID+W +++ R EDH +N+
Sbjct: 155 RIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVIDDWDMEITHVIRGEDHINNT 207
>sp|Q12L63|SYE_SHEDO Glutamate--tRNA ligase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=gltX PE=3 SV=1
Length = 473
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 96 RMQVS---LDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R+++S LD + ++ NF V+D+W + + S R EDH +N+
Sbjct: 162 RIEISNEMLDDLIIQRTDGVPTYNFCVVVDDWDMGITSVVRGEDHINNT 210
>sp|A7MKV5|SYE_CROS8 Glutamate--tRNA ligase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=gltX PE=3 SV=1
Length = 471
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 91 RNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNS 141
R ++ + LD + ++ + NF V+D+W +++ R EDH +N+
Sbjct: 157 RGPIEFSNLELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNT 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,988,715
Number of Sequences: 539616
Number of extensions: 1922003
Number of successful extensions: 8953
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 8836
Number of HSP's gapped (non-prelim): 215
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)