Query 031612
Match_columns 156
No_of_seqs 54 out of 56
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07106 TBPIP: Tat binding pr 89.4 6.7 0.00015 30.7 10.1 77 49-127 75-164 (169)
2 PF10168 Nup88: Nuclear pore c 88.6 8.8 0.00019 37.4 12.2 92 12-115 544-639 (717)
3 PF04102 SlyX: SlyX; InterPro 80.8 8.8 0.00019 26.5 6.3 53 52-104 3-58 (69)
4 PF03962 Mnd1: Mnd1 family; I 78.5 35 0.00075 27.8 12.1 61 11-72 69-129 (188)
5 KOG4657 Uncharacterized conser 77.3 41 0.00088 29.4 10.4 61 44-104 84-148 (246)
6 PF13747 DUF4164: Domain of un 75.2 29 0.00064 25.3 8.6 38 50-87 50-87 (89)
7 PF08776 VASP_tetra: VASP tetr 74.2 16 0.00036 23.7 5.6 33 55-89 5-37 (40)
8 PF03993 DUF349: Domain of Unk 74.2 23 0.0005 23.6 9.8 66 57-126 2-68 (77)
9 PF03310 Cauli_DNA-bind: Cauli 74.0 26 0.00057 27.5 7.8 55 50-104 3-74 (121)
10 PF10392 COG5: Golgi transport 72.5 40 0.00087 25.6 9.0 30 15-44 30-59 (132)
11 PRK11281 hypothetical protein; 72.4 93 0.002 32.3 13.1 100 10-110 79-193 (1113)
12 COG3404 Methenyl tetrahydrofol 71.5 59 0.0013 27.8 9.8 80 49-128 39-118 (208)
13 PRK00295 hypothetical protein; 71.0 32 0.0007 23.9 7.3 48 51-98 3-53 (68)
14 PF05700 BCAS2: Breast carcino 70.9 42 0.00091 27.7 8.8 66 12-77 98-167 (221)
15 PF12729 4HB_MCP_1: Four helix 69.4 39 0.00084 24.2 9.5 76 50-129 46-126 (181)
16 PF07851 TMPIT: TMPIT-like pro 69.1 88 0.0019 28.2 11.0 77 51-129 9-85 (330)
17 PF14282 FlxA: FlxA-like prote 67.9 38 0.00083 25.1 7.2 50 52-101 18-74 (106)
18 PF09766 FimP: Fms-interacting 67.7 90 0.002 27.8 11.1 74 37-110 69-161 (355)
19 KOG2129 Uncharacterized conser 67.4 98 0.0021 29.6 11.2 61 9-70 199-270 (552)
20 PF09440 eIF3_N: eIF3 subunit 65.8 56 0.0012 25.5 8.1 62 40-104 56-119 (133)
21 PF11220 DUF3015: Protein of u 64.7 27 0.0006 27.9 6.3 59 11-69 84-143 (144)
22 PF13972 TetR: Bacterial trans 64.1 57 0.0012 24.4 7.7 64 57-131 47-111 (146)
23 PF10158 LOH1CR12: Tumour supp 63.9 69 0.0015 25.0 8.8 52 50-102 67-118 (131)
24 PF04156 IncA: IncA protein; 63.8 69 0.0015 25.0 12.9 64 10-73 80-150 (191)
25 PF03961 DUF342: Protein of un 62.7 88 0.0019 28.2 9.9 79 7-86 330-408 (451)
26 PF10146 zf-C4H2: Zinc finger- 62.4 38 0.00082 28.8 7.0 79 49-127 49-136 (230)
27 TIGR03545 conserved hypothetic 61.9 1.5E+02 0.0033 28.3 14.4 86 46-132 209-301 (555)
28 TIGR03044 PS_II_psb27 photosys 61.8 31 0.00067 27.6 6.0 50 87-136 38-87 (135)
29 PF01025 GrpE: GrpE; InterPro 61.7 29 0.00062 26.6 5.8 90 9-107 23-114 (165)
30 TIGR02449 conserved hypothetic 61.7 54 0.0012 23.1 9.0 49 50-98 11-59 (65)
31 PF03962 Mnd1: Mnd1 family; I 61.2 89 0.0019 25.5 8.9 93 50-148 73-180 (188)
32 PLN03229 acetyl-coenzyme A car 59.1 1.2E+02 0.0027 30.4 10.7 87 10-99 435-545 (762)
33 PRK00124 hypothetical protein; 58.8 33 0.00071 27.6 5.8 40 82-122 101-145 (151)
34 PF14193 DUF4315: Domain of un 58.3 39 0.00085 24.7 5.6 30 50-79 5-34 (83)
35 PRK04863 mukB cell division pr 58.0 2.7E+02 0.0058 29.9 14.4 51 79-129 405-459 (1486)
36 PF06008 Laminin_I: Laminin Do 57.7 1.1E+02 0.0024 25.5 10.4 44 81-125 123-169 (264)
37 PF11867 DUF3387: Domain of un 57.5 1.1E+02 0.0025 26.5 9.3 59 61-119 195-256 (335)
38 cd07606 BAR_SFC_plant The Bin/ 57.2 1.1E+02 0.0024 25.3 9.0 68 54-124 2-75 (202)
39 PF04048 Sec8_exocyst: Sec8 ex 56.9 88 0.0019 24.1 10.9 63 27-89 2-69 (142)
40 PRK02119 hypothetical protein; 56.7 67 0.0015 22.6 7.5 48 51-98 7-57 (73)
41 PF02601 Exonuc_VII_L: Exonucl 55.2 1.3E+02 0.0028 25.5 9.3 99 3-101 128-229 (319)
42 PF07798 DUF1640: Protein of u 54.3 1.1E+02 0.0024 24.3 9.8 77 11-89 73-149 (177)
43 KOG3003 Molecular chaperone of 53.4 95 0.0021 27.0 8.0 52 76-132 86-137 (236)
44 PF13326 PSII_Pbs27: Photosyst 52.6 36 0.00077 27.0 5.0 47 87-133 50-96 (145)
45 PF13851 GAS: Growth-arrest sp 52.3 56 0.0012 26.9 6.3 87 11-104 55-144 (201)
46 PRK11352 regulator protein Frm 52.2 68 0.0015 23.5 6.1 70 49-122 9-87 (91)
47 PF09602 PhaP_Bmeg: Polyhydrox 52.2 60 0.0013 26.8 6.4 92 55-155 21-119 (165)
48 PF10241 KxDL: Uncharacterized 52.1 30 0.00065 24.9 4.2 26 19-44 58-86 (88)
49 PF12795 MscS_porin: Mechanose 52.0 1.3E+02 0.0029 24.7 14.1 94 11-104 38-139 (240)
50 PRK14629 hypothetical protein; 51.5 21 0.00045 26.9 3.3 25 47-71 4-28 (99)
51 PF10475 DUF2450: Protein of u 51.1 1.5E+02 0.0033 25.1 11.2 59 11-72 28-86 (291)
52 PRK00846 hypothetical protein; 50.5 94 0.002 22.5 8.2 50 51-100 11-63 (77)
53 TIGR03185 DNA_S_dndD DNA sulfu 50.3 2.3E+02 0.005 26.9 11.2 56 10-73 172-229 (650)
54 PF15456 Uds1: Up-regulated Du 50.2 1.2E+02 0.0026 23.5 9.4 73 52-129 21-98 (124)
55 cd07603 BAR_ACAPs The Bin/Amph 50.2 1.4E+02 0.0031 24.5 10.2 74 54-127 3-76 (200)
56 PF12491 ApoB100_C: Apolipopro 49.9 87 0.0019 21.9 6.9 47 56-102 4-54 (58)
57 TIGR02231 conserved hypothetic 49.2 1.8E+02 0.0039 26.7 9.7 39 47-85 125-163 (525)
58 PF14584 DUF4446: Protein of u 49.1 1.1E+02 0.0025 24.3 7.4 51 50-100 20-75 (151)
59 PF14695 LINES_C: Lines C-term 49.1 27 0.00059 22.5 3.1 29 32-60 7-38 (39)
60 PF14712 Snapin_Pallidin: Snap 49.0 90 0.0019 21.8 6.8 66 7-72 10-83 (92)
61 PF04124 Dor1: Dor1-like famil 48.5 1.8E+02 0.004 25.2 10.7 75 47-127 15-89 (338)
62 COG2900 SlyX Uncharacterized p 48.4 65 0.0014 23.4 5.3 36 69-104 27-62 (72)
63 PF05308 Mito_fiss_reg: Mitoch 48.2 21 0.00046 30.7 3.3 29 52-80 121-149 (253)
64 KOG0977 Nuclear envelope prote 47.7 2.4E+02 0.0052 27.3 10.4 76 16-91 111-189 (546)
65 KOG3681 Alpha-catenin [Extrace 47.0 1.7E+02 0.0036 29.8 9.6 92 19-118 708-817 (835)
66 PRK02793 phi X174 lysis protei 46.8 99 0.0021 21.6 7.5 48 51-98 6-56 (72)
67 TIGR03319 YmdA_YtgF conserved 46.5 2.6E+02 0.0056 26.3 13.9 44 61-104 102-145 (514)
68 PF10239 DUF2465: Protein of u 46.5 1E+02 0.0022 27.4 7.4 91 43-133 148-251 (318)
69 PF06193 Orthopox_A5L: Orthopo 46.4 1.3E+02 0.0028 24.9 7.5 44 51-98 112-160 (166)
70 COG3879 Uncharacterized protei 43.7 2E+02 0.0042 25.2 8.5 55 47-104 51-108 (247)
71 cd07601 BAR_APPL The Bin/Amphi 43.1 2E+02 0.0044 24.2 8.5 69 54-125 3-78 (215)
72 PF05983 Med7: MED7 protein; 41.7 1.2E+02 0.0026 24.3 6.5 47 47-94 115-161 (162)
73 PF10458 Val_tRNA-synt_C: Valy 41.0 79 0.0017 21.3 4.7 36 10-45 3-39 (66)
74 COG1937 Uncharacterized protei 41.0 1.4E+02 0.0031 22.0 6.4 43 47-93 7-55 (89)
75 PF02583 Trns_repr_metal: Meta 40.9 1.3E+02 0.0028 21.4 9.6 68 50-122 6-83 (85)
76 COG4192 Signal transduction hi 40.4 2.2E+02 0.0048 27.9 9.0 56 3-72 48-104 (673)
77 PF03920 TLE_N: Groucho/TLE N- 40.4 22 0.00047 28.5 2.1 24 58-81 35-58 (135)
78 cd07636 BAR_GRAF The Bin/Amphi 40.3 2.3E+02 0.0049 23.9 9.6 71 53-123 2-78 (207)
79 PF03286 Pox_Ag35: Pox virus A 40.2 1.2E+02 0.0026 25.6 6.5 54 50-107 137-190 (200)
80 PF06394 Pepsin-I3: Pepsin inh 39.7 35 0.00076 24.7 2.9 27 105-131 39-65 (76)
81 PF02183 HALZ: Homeobox associ 39.3 1.1E+02 0.0023 19.9 5.2 28 54-81 6-33 (45)
82 KOG0964 Structural maintenance 39.2 4.3E+02 0.0093 28.0 11.2 61 76-136 746-809 (1200)
83 PF07544 Med9: RNA polymerase 39.1 1.4E+02 0.003 21.2 9.4 58 44-101 19-82 (83)
84 COG1076 DjlA DnaJ-domain-conta 39.1 40 0.00087 26.7 3.4 33 14-46 114-146 (174)
85 PF02413 Caudo_TAP: Caudoviral 39.0 1.1E+02 0.0025 23.0 5.8 32 88-119 76-107 (130)
86 PF11262 Tho2: Transcription f 38.6 1.7E+02 0.0037 25.3 7.5 51 2-72 20-72 (298)
87 PF05739 SNARE: SNARE domain; 38.5 1.1E+02 0.0023 19.6 7.5 43 54-96 5-50 (63)
88 PF04849 HAP1_N: HAP1 N-termin 38.3 1.5E+02 0.0031 26.7 7.1 47 52-98 233-279 (306)
89 cd07602 BAR_RhoGAP_OPHN1-like 38.2 2.4E+02 0.0052 23.7 9.7 71 53-123 2-78 (207)
90 PF09789 DUF2353: Uncharacteri 38.1 2.3E+02 0.0049 25.6 8.3 94 10-103 85-183 (319)
91 PRK09303 adaptive-response sen 37.8 2.6E+02 0.0057 24.0 8.7 88 11-104 125-220 (380)
92 PF11180 DUF2968: Protein of u 37.7 2.5E+02 0.0054 23.7 8.1 87 16-104 89-187 (192)
93 PF04100 Vps53_N: Vps53-like, 37.6 3.1E+02 0.0067 24.7 11.6 54 48-102 66-119 (383)
94 PRK01773 hscB co-chaperone Hsc 37.6 1.7E+02 0.0038 23.6 6.9 61 70-130 45-106 (173)
95 PF15003 HAUS2: HAUS augmin-li 37.5 1.3E+02 0.0029 26.7 6.6 50 31-84 65-117 (277)
96 smart00397 t_SNARE Helical reg 37.5 1E+02 0.0022 19.2 7.1 43 53-95 15-57 (66)
97 PF02252 PA28_beta: Proteasome 37.3 1.7E+02 0.0036 23.4 6.7 101 12-126 10-122 (150)
98 COG0576 GrpE Molecular chapero 36.9 2E+02 0.0043 23.6 7.2 30 13-42 52-81 (193)
99 PF11221 Med21: Subunit 21 of 36.9 2E+02 0.0043 22.3 11.1 75 14-89 65-140 (144)
100 PF05633 DUF793: Protein of un 36.8 3.5E+02 0.0075 25.1 10.4 86 27-127 291-385 (389)
101 PLN03229 acetyl-coenzyme A car 36.6 4.7E+02 0.01 26.5 12.2 50 13-62 488-544 (762)
102 PRK03578 hscB co-chaperone Hsc 36.3 1.7E+02 0.0037 23.6 6.7 90 24-130 19-109 (176)
103 PF03670 UPF0184: Uncharacteri 36.2 1.8E+02 0.0038 21.5 7.8 54 52-105 25-78 (83)
104 PF12325 TMF_TATA_bd: TATA ele 36.0 2E+02 0.0044 22.1 7.3 81 47-128 13-98 (120)
105 COG1340 Uncharacterized archae 35.8 3.2E+02 0.007 24.4 10.2 70 30-99 115-190 (294)
106 TIGR02168 SMC_prok_B chromosom 35.8 4.1E+02 0.009 25.7 11.3 80 10-89 914-1022(1179)
107 PRK04406 hypothetical protein; 35.7 1.6E+02 0.0035 20.9 8.0 47 51-97 9-58 (75)
108 KOG0837 Transcriptional activa 35.6 1.3E+02 0.0027 26.9 6.2 35 47-81 221-255 (279)
109 PF04136 Sec34: Sec34-like fam 35.5 2.2E+02 0.0048 22.4 13.0 78 50-129 32-112 (157)
110 PF14772 NYD-SP28: Sperm tail 35.4 1.1E+02 0.0024 22.1 5.0 33 57-89 55-87 (104)
111 TIGR01688 dltC D-alanine--poly 35.4 45 0.00097 23.7 2.8 33 89-121 35-68 (73)
112 PF15003 HAUS2: HAUS augmin-li 35.2 1.8E+02 0.0039 25.9 7.0 57 48-104 49-123 (277)
113 TIGR03752 conj_TIGR03752 integ 35.1 2E+02 0.0044 27.3 7.8 33 47-79 60-92 (472)
114 PRK13694 hypothetical protein; 35.0 89 0.0019 23.2 4.4 28 50-77 16-43 (83)
115 PF06855 DUF1250: Protein of u 35.0 30 0.00066 22.1 1.8 21 2-22 7-27 (46)
116 PHA03155 hypothetical protein; 34.8 73 0.0016 25.0 4.1 30 41-70 3-32 (115)
117 COG4026 Uncharacterized protei 34.8 3.3E+02 0.0071 24.2 8.9 67 25-98 135-201 (290)
118 PRK04325 hypothetical protein; 34.8 1.6E+02 0.0035 20.7 7.6 49 50-98 6-57 (74)
119 TIGR02894 DNA_bind_RsfA transc 34.3 2.6E+02 0.0057 23.0 8.4 51 49-99 100-150 (161)
120 TIGR00606 rad50 rad50. This fa 34.3 5.5E+02 0.012 26.7 15.3 47 84-130 275-323 (1311)
121 PF08581 Tup_N: Tup N-terminal 34.2 1.8E+02 0.0039 21.0 7.7 44 51-95 2-45 (79)
122 PF13591 MerR_2: MerR HTH fami 33.6 23 0.00051 25.0 1.2 35 32-66 49-83 (84)
123 PF15397 DUF4618: Domain of un 33.4 3.3E+02 0.0072 23.8 11.5 79 9-88 65-155 (258)
124 PF01466 Skp1: Skp1 family, di 33.1 1E+02 0.0023 21.2 4.4 38 77-114 29-69 (78)
125 COG1422 Predicted membrane pro 32.9 86 0.0019 26.6 4.6 22 53-74 72-93 (201)
126 PRK00736 hypothetical protein; 32.8 1.7E+02 0.0037 20.2 7.2 48 52-99 4-54 (68)
127 KOG3091 Nuclear pore complex, 32.6 3.5E+02 0.0077 26.1 9.0 59 54-115 356-418 (508)
128 PF01544 CorA: CorA-like Mg2+ 32.6 2.6E+02 0.0057 22.4 9.8 35 80-114 160-194 (292)
129 PF02181 FH2: Formin Homology 32.6 3.2E+02 0.007 23.5 10.6 78 47-124 275-369 (370)
130 TIGR03354 VI_FHA type VI secre 32.4 2E+02 0.0044 26.1 7.2 75 10-92 241-331 (396)
131 PRK01203 prefoldin subunit alp 32.4 1.5E+02 0.0032 23.4 5.6 35 50-84 4-38 (130)
132 PF05320 Pox_RNA_Pol_19: Poxvi 32.3 2.9E+02 0.0064 22.9 7.8 80 37-132 49-132 (167)
133 PRK05658 RNA polymerase sigma 32.2 4.5E+02 0.0097 25.0 10.2 47 10-56 270-327 (619)
134 PF04216 FdhE: Protein involve 31.9 2.2E+02 0.0047 24.2 7.0 79 52-131 21-101 (290)
135 PRK15455 PrkA family serine pr 31.9 5.2E+02 0.011 25.7 10.6 112 28-150 422-539 (644)
136 PF06005 DUF904: Protein of un 31.8 1.9E+02 0.004 20.4 6.6 34 56-89 35-68 (72)
137 PF10073 DUF2312: Uncharacteri 31.3 1.1E+02 0.0025 22.1 4.4 28 50-77 8-35 (74)
138 PLN00064 photosystem II protei 31.3 1.6E+02 0.0034 24.5 5.7 46 88-133 68-113 (166)
139 PF04961 FTCD_C: Formiminotran 30.7 81 0.0018 25.5 4.0 67 49-115 34-100 (184)
140 KOG4460 Nuclear pore complex, 30.3 2.9E+02 0.0062 27.5 8.1 47 54-111 610-658 (741)
141 PF04156 IncA: IncA protein; 30.2 2.6E+02 0.0057 21.7 11.0 20 18-37 81-100 (191)
142 PF03993 DUF349: Domain of Unk 29.4 1.7E+02 0.0037 19.3 5.7 44 57-100 17-65 (77)
143 PRK10884 SH3 domain-containing 29.4 3.3E+02 0.0072 22.6 8.5 27 7-33 89-115 (206)
144 cd07637 BAR_ACAP3 The Bin/Amph 29.3 3.3E+02 0.0071 22.5 9.6 73 54-126 3-75 (200)
145 cd07639 BAR_ACAP1 The Bin/Amph 29.3 3.4E+02 0.0073 22.7 9.8 49 54-102 3-51 (200)
146 cd01671 CARD Caspase activatio 29.2 1.8E+02 0.0038 19.3 5.7 66 47-125 4-72 (80)
147 PHA03041 virion core protein; 29.1 2.1E+02 0.0045 23.5 6.0 41 49-89 96-140 (153)
148 PF00038 Filament: Intermediat 29.0 3.4E+02 0.0075 22.6 11.3 53 20-86 77-129 (312)
149 PRK14147 heat shock protein Gr 28.9 3.1E+02 0.0068 22.2 10.5 89 10-107 31-119 (172)
150 PRK01294 lipase chaperone; Pro 28.8 2.9E+02 0.0062 24.6 7.4 46 22-67 99-146 (336)
151 KOG2216 Conserved coiled/coile 28.8 60 0.0013 29.2 3.1 54 22-75 134-194 (303)
152 PF10234 Cluap1: Clusterin-ass 28.8 3.7E+02 0.0079 23.6 7.9 51 50-100 166-219 (267)
153 KOG4552 Vitamin-D-receptor int 28.8 4.1E+02 0.0088 23.4 10.3 83 19-102 12-98 (272)
154 cd00193 t_SNARE Soluble NSF (N 28.7 1.5E+02 0.0031 18.2 7.5 45 54-98 7-54 (60)
155 TIGR03752 conj_TIGR03752 integ 28.1 2.6E+02 0.0057 26.6 7.3 52 50-101 84-139 (472)
156 cd07604 BAR_ASAPs The Bin/Amph 28.1 3.6E+02 0.0077 22.5 9.5 71 55-126 4-77 (215)
157 PF13874 Nup54: Nucleoporin co 28.0 2.8E+02 0.0061 21.3 7.5 24 97-121 97-120 (141)
158 KOG0999 Microtubule-associated 27.9 3E+02 0.0065 27.5 7.8 44 108-154 668-719 (772)
159 PF10267 Tmemb_cc2: Predicted 27.7 4.9E+02 0.011 24.0 9.4 53 52-106 275-331 (395)
160 PF03480 SBP_bac_7: Bacterial 27.6 3.5E+02 0.0075 22.3 8.0 32 91-123 247-281 (286)
161 PF08317 Spc7: Spc7 kinetochor 27.5 4.1E+02 0.0089 23.1 9.4 19 54-72 217-235 (325)
162 KOG3385 V-SNARE [Intracellular 27.4 2.7E+02 0.0059 21.9 6.2 54 53-106 36-99 (118)
163 cd00584 Prefoldin_alpha Prefol 27.1 2.4E+02 0.0053 20.7 5.8 32 48-79 1-32 (129)
164 PF05062 RICH: RICH domain; I 26.9 2.6E+02 0.0057 20.6 6.7 60 27-92 19-78 (82)
165 COG3195 Uncharacterized protei 26.6 72 0.0016 26.7 3.0 25 96-120 91-115 (176)
166 PRK10265 chaperone-modulator p 26.5 44 0.00095 24.5 1.6 39 32-70 57-95 (101)
167 PRK05087 D-alanine--poly(phosp 26.4 85 0.0018 22.1 3.0 33 90-122 39-72 (78)
168 TIGR03007 pepcterm_ChnLen poly 26.3 4.8E+02 0.01 23.4 13.9 64 10-74 160-225 (498)
169 PF06103 DUF948: Bacterial pro 26.2 2.3E+02 0.005 19.7 7.9 18 57-74 30-47 (90)
170 PF06798 PrkA: PrkA serine pro 26.0 4.2E+02 0.0092 22.7 10.3 98 28-135 40-145 (254)
171 KOG1328 Synaptic vesicle prote 25.8 5.5E+02 0.012 26.7 9.3 96 27-125 321-426 (1103)
172 PF13870 DUF4201: Domain of un 25.7 3.3E+02 0.0071 21.3 9.8 54 78-131 112-171 (177)
173 PF04518 Effector_1: Effector 25.4 5.5E+02 0.012 23.8 9.2 112 1-128 189-303 (379)
174 PF11594 Med28: Mediator compl 25.2 3.2E+02 0.007 21.0 9.7 78 10-104 3-82 (106)
175 PF04108 APG17: Autophagy prot 25.2 4.1E+02 0.0089 24.0 7.8 48 52-99 257-304 (412)
176 PF03961 DUF342: Protein of un 25.0 4.1E+02 0.0089 24.0 7.8 21 51-71 332-352 (451)
177 PF04912 Dynamitin: Dynamitin 25.0 4.9E+02 0.011 23.1 9.7 50 50-100 316-365 (388)
178 PF00435 Spectrin: Spectrin re 24.9 2E+02 0.0044 18.6 10.9 63 7-81 4-69 (105)
179 PF06122 TraH: Conjugative rel 24.9 4.7E+02 0.01 23.2 8.0 80 47-127 69-160 (361)
180 COG3855 Fbp Uncharacterized pr 24.9 2.9E+02 0.0063 27.0 7.0 81 18-98 301-397 (648)
181 COG1730 GIM5 Predicted prefold 24.6 2.8E+02 0.0061 22.1 6.0 36 47-82 7-42 (145)
182 KOG3313 Molecular chaperone Pr 24.4 3E+02 0.0065 23.2 6.3 45 55-100 39-83 (187)
183 PF05276 SH3BP5: SH3 domain-bi 24.3 4.6E+02 0.0099 22.5 8.1 56 16-89 147-202 (239)
184 PRK12751 cpxP periplasmic stre 24.0 3.9E+02 0.0084 21.6 7.4 22 105-126 129-151 (162)
185 cd08768 Cdc6_C Winged-helix do 24.0 2E+02 0.0044 19.3 4.5 36 86-127 24-59 (87)
186 COG3850 NarQ Signal transducti 23.7 3.2E+02 0.0069 26.7 7.1 77 50-129 383-460 (574)
187 PF14223 UBN2: gag-polypeptide 23.5 2.8E+02 0.0061 19.7 5.7 92 11-107 5-98 (119)
188 PF02969 TAF: TATA box binding 23.5 2.6E+02 0.0057 19.4 5.7 52 93-148 8-65 (66)
189 PF10788 DUF2603: Protein of u 23.4 3.2E+02 0.0069 21.9 6.1 31 11-43 59-89 (137)
190 PF05010 TACC: Transforming ac 23.1 4.6E+02 0.0099 22.0 10.2 60 21-91 146-205 (207)
191 cd07633 BAR_OPHN1 The Bin/Amph 23.0 4.8E+02 0.01 22.3 9.2 65 53-117 2-69 (207)
192 KOG4673 Transcription factor T 23.0 7.5E+02 0.016 25.4 9.6 77 22-98 374-459 (961)
193 PF06419 COG6: Conserved oligo 22.9 6.7E+02 0.014 24.0 9.1 45 25-75 23-67 (618)
194 COG5113 UFD2 Ubiquitin fusion 22.9 3.9E+02 0.0085 27.2 7.7 75 48-129 396-475 (929)
195 PF03938 OmpH: Outer membrane 22.4 3.4E+02 0.0074 20.3 11.7 97 5-104 30-132 (158)
196 KOG4204 Histone deacetylase co 22.3 4.7E+02 0.01 22.2 7.2 42 47-88 42-83 (231)
197 PF07106 TBPIP: Tat binding pr 22.1 3.8E+02 0.0082 20.8 8.3 80 52-147 71-150 (169)
198 COG3750 Uncharacterized protei 22.1 2E+02 0.0044 21.4 4.4 28 50-77 18-45 (85)
199 PF02639 DUF188: Uncharacteriz 22.1 2.1E+02 0.0045 22.2 4.7 32 90-121 92-128 (130)
200 PHA02687 ORF061 late transcrip 22.1 4.6E+02 0.0099 22.6 7.0 48 50-100 166-213 (231)
201 COG5499 Predicted transcriptio 22.1 4E+02 0.0087 21.0 8.3 93 2-105 7-115 (120)
202 PF12057 DUF3538: Domain of un 22.0 3E+02 0.0065 21.6 5.5 27 49-75 2-28 (120)
203 PRK11380 hypothetical protein; 21.9 1.7E+02 0.0037 26.8 4.8 31 95-126 102-132 (353)
204 TIGR00414 serS seryl-tRNA synt 21.9 6E+02 0.013 23.0 9.4 29 49-77 72-100 (418)
205 PF15070 GOLGA2L5: Putative go 21.9 7.5E+02 0.016 24.1 10.5 82 51-132 20-107 (617)
206 COG1196 Smc Chromosome segrega 21.9 3.4E+02 0.0073 27.8 7.3 36 49-84 966-1001(1163)
207 PF04353 Rsd_AlgQ: Regulator o 21.7 3.3E+02 0.0071 22.1 5.9 37 85-121 21-61 (153)
208 PRK10929 putative mechanosensi 21.5 9.6E+02 0.021 25.2 12.9 99 11-110 65-174 (1109)
209 PF04157 EAP30: EAP30/Vps36 fa 21.3 2.9E+02 0.0063 22.5 5.7 81 52-136 25-114 (223)
210 cd07638 BAR_ACAP2 The Bin/Amph 21.3 4.9E+02 0.011 21.7 9.2 47 54-100 3-49 (200)
211 TIGR02780 TrbJ_Ti P-type conju 21.2 5E+02 0.011 21.8 10.6 108 11-128 82-196 (246)
212 PRK05014 hscB co-chaperone Hsc 21.2 4.3E+02 0.0093 21.1 6.7 44 23-66 13-62 (171)
213 KOG4673 Transcription factor T 21.0 6.2E+02 0.014 26.0 8.6 53 9-78 585-637 (961)
214 PRK00294 hscB co-chaperone Hsc 20.9 4.5E+02 0.0098 21.2 6.9 20 26-45 19-38 (173)
215 PF15294 Leu_zip: Leucine zipp 20.8 4.3E+02 0.0093 23.4 6.9 77 52-128 189-269 (278)
216 PF01471 PG_binding_1: Putativ 20.6 2E+02 0.0043 18.0 3.7 13 92-104 32-44 (57)
217 PF04576 Zein-binding: Zein-bi 20.5 3.8E+02 0.0083 20.2 6.2 40 57-100 7-46 (94)
218 COG0721 GatC Asp-tRNAAsn/Glu-t 20.5 1.6E+02 0.0034 21.7 3.6 29 78-106 22-52 (96)
219 PF05812 Herpes_BLRF2: Herpesv 20.5 2.8E+02 0.0061 21.7 5.1 18 105-128 40-57 (118)
220 PF11291 DUF3091: Protein of u 20.2 2.7E+02 0.0058 21.2 4.8 26 33-60 3-28 (100)
221 TIGR00333 nrdI ribonucleoside- 20.2 60 0.0013 25.0 1.3 21 2-22 72-93 (125)
222 PLN02320 seryl-tRNA synthetase 20.0 7.7E+02 0.017 23.5 9.5 30 47-76 131-160 (502)
223 PHA03162 hypothetical protein; 20.0 3.8E+02 0.0082 21.6 5.8 47 96-151 35-99 (135)
No 1
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.38 E-value=6.7 Score=30.68 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHH-H
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQ------------DLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASF-A 115 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKq------------el~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~-~ 115 (156)
..|=.+|+.+++++..|...++.+.++-+ ..+..++..+...-..++.|+. |-.+.|++|.... .
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHH
Confidence 34445677778888888777777766643 3334444444444455555555 4456776665544 4
Q ss_pred hHHHHHHHHHHh
Q 031612 116 NFKQVIDEWTVQ 127 (156)
Q Consensus 116 ~f~~~I~ewt~~ 127 (156)
.|.....+|..+
T Consensus 153 ~~~~~~k~w~kR 164 (169)
T PF07106_consen 153 EYKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHHH
Confidence 888888899865
No 2
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.58 E-value=8.8 Score=37.43 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=50.7
Q ss_pred hHHHHHHH-HHhhhhhHHHHHHH---HHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 12 AIDGLVNL-LTKSNHELTMVQYK---LEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL 87 (156)
Q Consensus 12 aVd~Le~~-FqKAesDLdyIq~R---LE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L 87 (156)
|+..|..- +.+.+.--+-|++| |..++.+.+-+ =-.+-++++.|++....|-++++++...|+.++.|+...|
T Consensus 544 a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~---L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 544 ATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKE---LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444322 34444444445555 44444432211 1134445555566666667777777777777777766544
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612 88 VRNRNLVQRMQVSLDIPVANESEDASFA 115 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdleplteeE~~a~~ 115 (156)
+.++ ...|+||++|+.-+.
T Consensus 621 -------~~l~--~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 621 -------QLLN--SQLPVLSEAEREFKK 639 (717)
T ss_pred -------HHHh--ccCCCCCHHHHHHHH
Confidence 3353 347889999986654
No 3
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.81 E-value=8.8 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 52 VSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
=+||-.+..+++=+..-++ ++.++|+.-+|++...|..-..-|..+....+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~ 58 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGSA 58 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4678888888776655554 5678899999999999988888888887554433
No 4
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.52 E-value=35 Score=27.83 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
..+++|..-..+.+..+.-++.+|+.+ +..-+++..=..+|++|..++.++..|..+++..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666677777777777776 4444555677789999999999999998888844
No 5
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.31 E-value=41 Score=29.39 Aligned_cols=61 Identities=28% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCC
Q 031612 44 DNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL----VRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 44 d~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L----~~t~~liQ~LQ~~tdle 104 (156)
.+++-+.+-+.++..|+++..|-...+.+..++-+++.-|.... .++=....+.|..+++|
T Consensus 84 k~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~ 148 (246)
T KOG4657|consen 84 KEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIH 148 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence 35688999999999999999999999999988877777776665 45555667788888887
No 6
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=75.19 E-value=29 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL 87 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L 87 (156)
.|-++|-....|...|..-|.+++..=...|..||..|
T Consensus 50 rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 50 RLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555444
No 7
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=74.25 E-value=16 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
+.++|.+ .|++-.++|...|.|++|.++.-|++
T Consensus 5 le~~KqE--IL~EvrkEl~K~K~EIIeA~~~eL~r 37 (40)
T PF08776_consen 5 LERLKQE--ILEEVRKELQKVKEEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344443 47788889999999999999998875
No 8
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=74.21 E-value=23 Score=23.62 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 57 KVQEDLPILKEQCRELLAAKQDLID-KASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~aeKqel~d-~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
+|..++.++|..+-.-..+-.+..+ .....|..=..||.++..-++.+. -+.+...++++.++|..
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d----~~~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED----WKEAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHH
Confidence 3556666777666554444333332 333455555667777766555443 46788899999999975
No 9
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=74.04 E-value=26 Score=27.54 Aligned_cols=55 Identities=13% Similarity=0.372 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-----------HHHHHHHHhhcCCC
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAK------QDLIDKASAILVRN-----------RNLVQRMQVSLDIP 104 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeK------qel~d~ir~~L~~t-----------~~liQ~LQ~~tdle 104 (156)
+.+++|+.+.+++..+.+.++.++... ++.++.|-|.+.+. -++++.|.++=+.+
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~ 74 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQ 74 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCC
Confidence 457778888888888888888887763 47777777777664 34556665544433
No 10
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=72.47 E-value=40 Score=25.60 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhCCC
Q 031612 15 GLVNLLTKSNHELTMVQYKLEKEFQQIYPD 44 (156)
Q Consensus 15 ~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd 44 (156)
.+..-..|-..|++.|..+|+..+..+|++
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~ 59 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHED 59 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 344566777788888888888888776664
No 11
>PRK11281 hypothetical protein; Provisional
Probab=72.40 E-value=93 Score=32.26 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CC------CCCChHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQI-YP------DNANPMKLVSRIKKVQEDLPILKEQCREL---LAAKQDL 79 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~-~p------d~aNPv~Ll~rL~~Iksr~~aL~~q~~~l---~aeKqel 79 (156)
....+.|......|...+.-.+.+|+ +.++. -| ++..-..|=++|..+...++...++..++ ++..+..
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~ 157 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQ 157 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34556666677777777778888887 44431 11 11133457777777777777777766654 6667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-----CCCChhh
Q 031612 80 IDKASAILVRNRNLVQRMQVSLDI-----PVANESE 110 (156)
Q Consensus 80 ~d~ir~~L~~t~~liQ~LQ~~tdl-----eplteeE 110 (156)
-+++++.+..++..+|++.++..- +|+|++.
T Consensus 158 PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~ 193 (1113)
T PRK11281 158 PERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQ 193 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 889999999999999999977654 3676644
No 12
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=71.54 E-value=59 Score=27.80 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhh
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~ 128 (156)
..++..|++=|..|...-..++.++.+-+++.........+-++..-..-..+.+|--||||+++...=-|.-.....+|
T Consensus 39 ~~MV~~lt~gKk~Y~~~d~e~k~i~~~~~~ik~~l~~lidkD~eAf~~im~AyKlPK~teEEK~~R~~~lQ~Alk~Aa~v 118 (208)
T COG3404 39 ASMVANLTRGKKGYEDYDDEMKEILEELQKIKAELLALIDKDEEAFNLIMAAYKLPKSTEEEKAARRKALQNALKEAAKV 118 (208)
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 44577888889999999999999999999999999999999999999999999999999999988874444444444433
No 13
>PRK00295 hypothetical protein; Provisional
Probab=70.95 E-value=32 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKE---QCRELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~---q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
+-+||..+..+++=... .+-++.++|+.-+|.+++.|..-..-+..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44678888888876664 4445678899999999999876666565555
No 14
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.85 E-value=42 Score=27.72 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHH-HHHHHhCCCCC---ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 12 AIDGLVNLLTKSNHELTMVQYKLE-KEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 12 aVd~Le~~FqKAesDLdyIq~RLE-~Ef~~~~pd~a---NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
-++.+...+.+|.+-|.|...|+. .|....|..++ +--.|-.-++.++.++..++.++++|-...|
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK 167 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999997 69999999987 6677777788888888888888888766544
No 15
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=69.43 E-value=39 Score=24.21 Aligned_cols=76 Identities=11% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAA-----KQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEW 124 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~ae-----Kqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ew 124 (156)
.-+..+..++..+..+......+... .++....+.......-..+..+.+ -+.+++|+..+..|.+..+.|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~y 121 (181)
T PF12729_consen 46 PSIELLNDIRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEK----LILSPEEKQLLEEFKEAWKAY 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666555444 334444444444444444444443 246677888888888888888
Q ss_pred HHhhc
Q 031612 125 TVQVR 129 (156)
Q Consensus 125 t~~~~ 129 (156)
.....
T Consensus 122 ~~~~~ 126 (181)
T PF12729_consen 122 RKLRD 126 (181)
T ss_pred HHHHH
Confidence 66553
No 16
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.14 E-value=88 Score=28.24 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhc
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~ 129 (156)
|-++.+.||+.+......++++...|..-..+|.++-..-..+...|++.-. ..+.|+.+....+..-|.+...++.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~--~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK--SLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHHhhHH
Confidence 4455566666666666666666666665555554443333333333333211 2566788888899999999887764
No 17
>PF14282 FlxA: FlxA-like protein
Probab=67.89 E-value=38 Score=25.14 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=35.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031612 52 VSRIKKVQEDLPILKEQCRELLA-------AKQDLIDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~a-------eKqel~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
-..|+.|+.++..|..++++|.. +|+.-+..|...+..-..-|++|+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888777 456666666766666666666666543
No 18
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=67.72 E-value=90 Score=27.77 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=46.4
Q ss_pred HHHHhCCCC--------CChHHH-HHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 031612 37 EFQQIYPDN--------ANPMKL-VSRIKKVQEDLPILKEQCRELLAA----------KQDLIDKASAILVRNRNLVQRM 97 (156)
Q Consensus 37 Ef~~~~pd~--------aNPv~L-l~rL~~Iksr~~aL~~q~~~l~ae----------Kqel~d~ir~~L~~t~~liQ~L 97 (156)
||....|.. .+|=.+ |+||.-=-.+=..|+.+++++... |++-.+.+-..|.+-+....-+
T Consensus 69 EF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 69 EFYAKAPEEISDPELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHhChhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555543 266664 677654333334444555444444 4555677777888888889999
Q ss_pred HhhcCCCCCChhh
Q 031612 98 QVSLDIPVANESE 110 (156)
Q Consensus 98 Q~~tdleplteeE 110 (156)
|...|+++.....
T Consensus 149 q~~l~~~~~~~~~ 161 (355)
T PF09766_consen 149 QEYLGLPHTKKRK 161 (355)
T ss_pred HHHhCCCccchhh
Confidence 9999999665333
No 19
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.39 E-value=98 Score=29.61 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHH---------HHhCCCCC--ChHHHHHHHHHHHhhHHHHHHHHH
Q 031612 9 NHQAIDGLVNLLTKSNHELTMVQYKLEKEF---------QQIYPDNA--NPMKLVSRIKKVQEDLPILKEQCR 70 (156)
Q Consensus 9 ~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef---------~~~~pd~a--NPv~Ll~rL~~Iksr~~aL~~q~~ 70 (156)
-++-|++|-...+|-+.|-+|+|.+|+.+. .++ ||.. -|..+.--|.++|+++.-|+.+|.
T Consensus 199 qEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~-~~~~gD~a~~~~~hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKI-PDVHGDEAAAEKLHIDKLQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcC-ccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888899999999999999998764 333 4331 556666667777777777776654
No 20
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=65.80 E-value=56 Score=25.53 Aligned_cols=62 Identities=18% Similarity=0.414 Sum_probs=51.6
Q ss_pred HhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 40 QIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA--KQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 40 ~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae--Kqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
..||+..-|..+.+|=..|-+++..|.+.|.+|..- ..+.+..+|+ .-...++-|++..|+.
T Consensus 56 ~l~~~~e~p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~~~ev~~~l~~---dk~~nl~~L~~~h~it 119 (133)
T PF09440_consen 56 ELYPDDEVPAELAEKREEVLAELKELEEETEPVLELLEDPEVVKNLRS---DKKQNLEYLEENHGIT 119 (133)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHc---cHHHHHHHHHHhcCCC
Confidence 457888899999999999999999999999998775 4678888888 4455666777888876
No 21
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=64.75 E-value=27 Score=27.87 Aligned_cols=59 Identities=22% Similarity=0.422 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQC 69 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~ 69 (156)
..++-|-.++.....|-..+...|...|.+.||.. ..|..++..|..+=..-+.|..-|
T Consensus 84 E~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~~~~~d~~La~y~ 143 (144)
T PF11220_consen 84 EHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVAVMAGDPALAKYC 143 (144)
T ss_pred chHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCHHHHHhc
Confidence 34677888899999999999999999999999965 599999999999988888887655
No 22
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=64.09 E-value=57 Score=24.40 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=36.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH-hHHHHHHHHHHhhccc
Q 031612 57 KVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFA-NFKQVIDEWTVQVRSR 131 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~-~f~~~I~ewt~~~~~~ 131 (156)
.|-++++.|+.+++.+...+...+ +.+++.|.++--+. +++++-...+ +..-+++-|-......
T Consensus 47 ~Ll~~~p~L~~~~~~~~~~~~~~~----------~~l~~~l~~~g~l~-~~~~~~~~La~~i~lv~t~Wl~~~~~~ 111 (146)
T PF13972_consen 47 DLLRRDPELKKRYRQLQQRRREQL----------RQLLQSLIEAGILR-IDDEELQALADNIWLVSTFWLSFLETQ 111 (146)
T ss_dssp HHHHC-HHHHHHHHHHHHHHHHHH----------HHHHHHHHHTTSB----GHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 333455555555555555444433 44455555553344 6666666665 8888999999988643
No 23
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=63.87 E-value=69 Score=25.05 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td 102 (156)
+++..+..-|.++...++++++ ..+=...+++|+..|..+..++.+|-...-
T Consensus 67 ~l~~~~~erqk~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 67 KLLQQMVERQKRFAKFAEQLEK-VNELSQQLSRCQSLLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3344444444445555554444 233345566677777777777777665544
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.81 E-value=69 Score=25.04 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC-------ChHHHHHHHHHHHhhHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA-------NPMKLVSRIKKVQEDLPILKEQCRELL 73 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a-------NPv~Ll~rL~~Iksr~~aL~~q~~~l~ 73 (156)
+..+.+...........|+..+.++.......-.-.. -+-..-+++..+.+.+..+...++++.
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777766544333322211 333455556666666666666666665
No 25
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.66 E-value=88 Score=28.23 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=55.9
Q ss_pred cchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 7 QHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAI 86 (156)
Q Consensus 7 ~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~ 86 (156)
|......+.|.....+....|..+...|..=-.... ...=|....+.+++++..+..|..+++++..+.+++.+.++..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666777777777777777777777543222122 3334667788888888888888888888888888777776655
No 26
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.41 E-value=38 Score=28.79 Aligned_cols=79 Identities=14% Similarity=0.317 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh-cCCCCCC--hhhH-HHH--HhHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILV---RNRNLVQRMQVS-LDIPVAN--ESED-ASF--ANFKQ 119 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~---~t~~liQ~LQ~~-tdleplt--eeE~-~a~--~~f~~ 119 (156)
+..+++|.-|..++-+|-.-++..-.++.+..+.|..... .-+.-|-++.+. .|++||. ++|+ .-+ ..|..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~eE~~~~~~~~~~~~ 128 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLEEEELSKISPDYLQK 128 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccccCHHHhhc
Confidence 3678999999999999999999999998888887766544 344556778888 9988442 3332 222 24667
Q ss_pred HHHHHHHh
Q 031612 120 VIDEWTVQ 127 (156)
Q Consensus 120 ~I~ewt~~ 127 (156)
+.+.|...
T Consensus 129 ~~~~~~p~ 136 (230)
T PF10146_consen 129 VKSPWAPQ 136 (230)
T ss_pred ccccCCCc
Confidence 78888775
No 27
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.89 E-value=1.5e+02 Score=28.29 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=56.5
Q ss_pred CChH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCCCCChhhHHHHHhHH
Q 031612 46 ANPM---KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILV----RNRNLVQRMQVSLDIPVANESEDASFANFK 118 (156)
Q Consensus 46 aNPv---~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~----~t~~liQ~LQ~~tdleplteeE~~a~~~f~ 118 (156)
.||. +..+++.+||++..+.+..++.+..+=+...+.++..+. .--+=+.+|....++.+.. -..=+..=|.
T Consensus 209 k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~-~~~~~~~L~g 287 (555)
T TIGR03545 209 KNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD-LKNFAVDLFG 287 (555)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc-HHHHHHHHhh
Confidence 4899 667788888888888777777655444444444444444 4444466788888876443 3444555778
Q ss_pred HHHHHHHHhhcccc
Q 031612 119 QVIDEWTVQVRSRT 132 (156)
Q Consensus 119 ~~I~ewt~~~~~~~ 132 (156)
.=|.+|..++...+
T Consensus 288 ~~i~~~~~~~~~~y 301 (555)
T TIGR03545 288 PEIRKYLQKFLKYY 301 (555)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888875433
No 28
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=61.82 E-value=31 Score=27.61 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhcccccccc
Q 031612 87 LVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDED 136 (156)
Q Consensus 87 L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~~~~~ 136 (156)
...|+.+|+.|+...++|--++.=.++-+...+.|.+|-+.-|+.....+
T Consensus 38 ~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g 87 (135)
T TIGR03044 38 VEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLINDYISRYRRRPRVNG 87 (135)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 35689999999999999866655666777999999999999987764344
No 29
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=61.71 E-value=29 Score=26.62 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 031612 9 NHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA--KQDLIDKASAI 86 (156)
Q Consensus 9 ~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae--Kqel~d~ir~~ 86 (156)
.+..++.|..-|.++.++++-+..|+..|.....-. .++.+-..+-.+.+.+...... ..+-.+.+...
T Consensus 23 l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~---------~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g 93 (165)
T PF01025_consen 23 LEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKY---------ALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEG 93 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 345667777778888888888888887776643322 1222222333333344443333 33334566666
Q ss_pred HHHHHHHHHHHHhhcCCCCCC
Q 031612 87 LVRNRNLVQRMQVSLDIPVAN 107 (156)
Q Consensus 87 L~~t~~liQ~LQ~~tdleplt 107 (156)
+..+..-+..+-...|++++.
T Consensus 94 ~~~~~~~l~~~L~~~Gv~~i~ 114 (165)
T PF01025_consen 94 LEMILKQLEDILEKNGVEEIE 114 (165)
T ss_dssp HHHHHHHHHHHHHTTTEEEE-
T ss_pred HHHHHHHHHHHHHHCCCEecC
Confidence 777777777777888877443
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.67 E-value=54 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
.|+.+...++.+-..|..+...+-.+...++++.-..=...=.||.+|-
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788888899999999999998888888888877666555566776663
No 31
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.19 E-value=89 Score=25.46 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH--hhcCCCCCChhhHHHHHhHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDL------IDKASAILVRNRNLVQRMQ--VSLDIPVANESEDASFANFKQVI 121 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel------~d~ir~~L~~t~~liQ~LQ--~~tdleplteeE~~a~~~f~~~I 121 (156)
+|-+++..++.++..|+..++.....+.++ +..+...=.....+-.+|+ ...|.+.+ +.-+.....+...+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i-~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKI-EKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHH
Confidence 344555555566666666666555444433 2111111111122222333 22232222 22233444778889
Q ss_pred HHHHHhhc-------cccccccccCChhhHHHHH
Q 031612 122 DEWTVQVR-------SRTRDEDHDSNSEDINKLL 148 (156)
Q Consensus 122 ~ewt~~~~-------~~~~~~~~~~~~~d~n~~l 148 (156)
..||.-+- .++| +++.++|+-|
T Consensus 152 nrwTDNI~~l~~~~~~k~~-----~~~~~i~k~f 180 (188)
T PF03962_consen 152 NRWTDNIFSLKSYLKKKFG-----MDEEDIRKEF 180 (188)
T ss_pred HHHHhhHHHHHHHHHHhcC-----CCHHHHHHHc
Confidence 99998772 3444 2666777643
No 32
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=59.14 E-value=1.2e+02 Score=30.39 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHhh-h-------hhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHH-----------HHHHHH
Q 031612 10 HQAIDGLVNLLTKS-N-------HELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPI-----------LKEQCR 70 (156)
Q Consensus 10 ~~aVd~Le~~FqKA-e-------sDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~a-----------L~~q~~ 70 (156)
+-.|++|..-|-|| + -.|+-.=-+|..||-+.|..-.|-+.|-++|-.++.+... |++.
T Consensus 435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK-- 512 (762)
T PLN03229 435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK-- 512 (762)
T ss_pred HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHH--
Confidence 45788999999999 3 4577777899999999999888999998888888866655 4443
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Q 031612 71 ELLAAKQDLIDKASA-----ILVRNRNLVQRMQV 99 (156)
Q Consensus 71 ~l~aeKqel~d~ir~-----~L~~t~~liQ~LQ~ 99 (156)
+..=|+|.-.++.. .|..-|.||....+
T Consensus 513 -~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 513 -IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred -HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 55557888888888 88899999999987
No 33
>PRK00124 hypothetical protein; Validated
Probab=58.77 E-value=33 Score=27.62 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhh---cCCC-CCChhhHHHHH-hHHHHHH
Q 031612 82 KASAILVRNRNLVQRMQVS---LDIP-VANESEDASFA-NFKQVID 122 (156)
Q Consensus 82 ~ir~~L~~t~~liQ~LQ~~---tdle-plteeE~~a~~-~f~~~I~ 122 (156)
.|...| ..|.+-++|..+ +|.| |.|.+|+..|. +|..++.
T Consensus 101 nI~~~L-~~R~~~~~lR~~G~~t~Gp~~~~~~Dr~~F~~~L~~~l~ 145 (151)
T PRK00124 101 NIDQLL-AMRDLMATLRRSGIRTGGPKPFTQEDRSRFEAELDKLIR 145 (151)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344444 348888888874 3344 99999998886 5555554
No 34
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=58.29 E-value=39 Score=24.68 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
+|.+.|.+.+.++..+.+++++|-+++++.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999998854
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.96 E-value=2.7e+02 Score=29.93 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhcCCCCCChhhH-HHHHhHHHHHHHHHHhhc
Q 031612 79 LIDKASAILVRNRNLV---QRMQVSLDIPVANESED-ASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 79 l~d~ir~~L~~t~~li---Q~LQ~~tdleplteeE~-~a~~~f~~~I~ewt~~~~ 129 (156)
-++...+.+..-...+ ..-+...|+++||.++= .-..+|.+.+.+=+.++.
T Consensus 405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333 34455678899996664 445599999998888875
No 36
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.73 E-value=1.1e+02 Score=25.48 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC---CCChhhHHHHHhHHHHHHHHH
Q 031612 81 DKASAILVRNRNLVQRMQVSLDIP---VANESEDASFANFKQVIDEWT 125 (156)
Q Consensus 81 d~ir~~L~~t~~liQ~LQ~~tdle---plteeE~~a~~~f~~~I~ewt 125 (156)
..+...|.....|+++|+.+ ++. ...+.|...+..+-.-|..|-
T Consensus 123 ~~l~~~l~ea~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999888 455 455666667777777777773
No 37
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=57.49 E-value=1.1e+02 Score=26.53 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCChhhHHHHHhHHH
Q 031612 61 DLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS---LDIPVANESEDASFANFKQ 119 (156)
Q Consensus 61 r~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~---tdleplteeE~~a~~~f~~ 119 (156)
+|..+.++++++...=+.=.-..-..+..-..|.++|.+. +--.-||++|.+-|.-+.+
T Consensus 195 ~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~el~~~~~r~~~~gLseeE~AFyd~L~~ 256 (335)
T PF11867_consen 195 RYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAKELREEEERAEELGLSEEELAFYDALAK 256 (335)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHc
Confidence 4555666666665542221112222233334455555543 2223699999888865543
No 38
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.25 E-value=1.1e+02 Score=25.34 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=49.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHH------HHHhHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDA------SFANFKQVIDEW 124 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~------a~~~f~~~I~ew 124 (156)
.|..+.+....|.++|..|...=+.++|+.+.--.++...++.|..-.|. ++++.- ++..|...++|-
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~---~dD~~~~a~gg~~l~kF~~~l~ei 75 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGG---HDDPISVAVGGPVMTKFTSALREI 75 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCChHHHhccchHHHHHHHHHHHH
Confidence 46677788888888888888888888898888888888888888888764 333332 455555555553
No 39
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=56.87 E-value=88 Score=24.05 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 27 LTMVQYKLEKEFQQIYPDNANPMKLVSRIKK-----VQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 27 LdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~-----Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
|+-+-.+.++|-....-++.||+.+.=.+-- ...+++.++..++.+-.+=+++++.=...+++
T Consensus 2 l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~ 69 (142)
T PF04048_consen 2 LDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNS 69 (142)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778877777789999998432211 22355555555555555444444443334433
No 40
>PRK02119 hypothetical protein; Provisional
Probab=56.69 E-value=67 Score=22.60 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
+=+||-.+..++.=...-++ ++.++|+.-+|.+++.|..-..-+..++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577777777766555554 4677899999999999866555555544
No 41
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=55.15 E-value=1.3e+02 Score=25.50 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=54.9
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHH-HHHHHHHHhh--HHHHHHHHHHHHHHHHHH
Q 031612 3 DHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKL-VSRIKKVQED--LPILKEQCRELLAAKQDL 79 (156)
Q Consensus 3 ~~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~L-l~rL~~Iksr--~~aL~~q~~~l~aeKqel 79 (156)
|..+|--.+|.+-+...+......|+....||..-+....-...+-+.. -.++..-..+ ...|....+.|-..++.+
T Consensus 128 d~ra~TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL 207 (319)
T PF02601_consen 128 DLRAPTPTAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRL 207 (319)
T ss_pred HhhCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777888888888877777665432211111 1111111111 123444445555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 031612 80 IDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 80 ~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
...++..|.....-++.|..+.
T Consensus 208 ~~~~~~~l~~~~~~L~~l~~~l 229 (319)
T PF02601_consen 208 KQAIQQKLQRKRQRLQNLSNRL 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666665433
No 42
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.29 E-value=1.1e+02 Score=24.31 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
..+..+...+.+=..|++-+..+|.+|+.+.-.+.. +-+=-+-.+++++...+...++++-..=..-+..+|+.+.+
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~k--lD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVK--LDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777777777777665544310 01111222455555555555555544444444444444443
No 43
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=53.41 E-value=95 Score=27.00 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhcccc
Q 031612 76 KQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRT 132 (156)
Q Consensus 76 Kqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~ 132 (156)
.++++|+++++|....++-+++++.+. +...-+-.+|+.-.-|-..-+...+
T Consensus 86 ~~eLkdk~~rs~Ad~eNlr~R~~r~~e-----dak~FaiQ~f~kdLleVaD~Le~a~ 137 (236)
T KOG3003|consen 86 EQELKDKYLRSLAECENLRDRTIRDVE-----DAKKFAIQSFCKDLLEVADNLEKAT 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999998752 2233344488885555555454333
No 44
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=52.64 E-value=36 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.328 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhccccc
Q 031612 87 LVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTR 133 (156)
Q Consensus 87 L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~~ 133 (156)
...|+.+|+.|....+++.-..+=..+-..+++.|.+|-..-|....
T Consensus 50 ~~dt~~vv~~lr~~l~l~~d~~~~~~~~~~ar~~in~~vs~YRr~~~ 96 (145)
T PF13326_consen 50 VKDTRAVVKTLREALELDKDDPNRAEAAAEARELINDYVSRYRRGPS 96 (145)
T ss_dssp HHHHHHHHHHHHHHHCS-TT-TTHHHHHHHHHHHHHHHHCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45689999999999999965555556667999999999988875543
No 45
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.28 E-value=56 Score=26.88 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC-CC--CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYP-DN--ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL 87 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~p-d~--aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L 87 (156)
+.-..|..=+++|..+..-.++.|..=-+-... .+ +.=-.+-+.|+.++-++..|..+|..+-.+..++-++--
T Consensus 55 ~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~--- 131 (201)
T PF13851_consen 55 QENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE--- 131 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344456666777777777777777642111110 01 133355678899999999999999999999988877664
Q ss_pred HHHHHHHHHHHhhcCCC
Q 031612 88 VRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdle 104 (156)
.+|+.+|+.+|+-
T Consensus 132 ----~~i~evqQk~~~k 144 (201)
T PF13851_consen 132 ----SAIQEVQQKTGLK 144 (201)
T ss_pred ----HHHHHHHHHHHHH
Confidence 5667788888865
No 46
>PRK11352 regulator protein FrmR; Provisional
Probab=52.21 E-value=68 Score=23.52 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCCC-ChhhHHHHHhHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCR------ELLAAKQDLIDKASAILVRNRNLV--QRMQVSLDIPVA-NESEDASFANFKQ 119 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~------~l~aeKqel~d~ir~~L~~t~~li--Q~LQ~~tdlepl-teeE~~a~~~f~~ 119 (156)
-+|+.||++|+..+..+...++ +|+++ +.++|..|.+.+..| .+|+....-+.. .++++.+..-|..
T Consensus 9 ~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Q----l~Avr~Al~~~~~~ile~hl~~cv~~~~~~~~~~~~~i~el~~ 84 (91)
T PRK11352 9 KKVLTRVRRIRGQIDALERSLEGDAECRAILQQ----IAAVRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIE 84 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHH
Confidence 4688899999988888887644 45543 445666666555443 334444333321 2233444555555
Q ss_pred HHH
Q 031612 120 VID 122 (156)
Q Consensus 120 ~I~ 122 (156)
+|.
T Consensus 85 ~i~ 87 (91)
T PRK11352 85 LVR 87 (91)
T ss_pred HHH
Confidence 554
No 47
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=52.17 E-value=60 Score=26.77 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=46.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh-----hHHHHHhHHHHHHHHHHhhc
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANES-----EDASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdlepltee-----E~~a~~~f~~~I~ewt~~~~ 129 (156)
|+.+-+...-+..+.-..+..|+|.+-+.-..|.+ +++++ .++..-+.++ -.+.-+.++..|.|||.+++
T Consensus 21 ls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~---~~~q~--~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~ 95 (165)
T PF09602_consen 21 LSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEK---ELKQF--KREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLN 95 (165)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554443333322 22222 1111111111 12345678999999999998
Q ss_pred cccccccccCChhhHHH--HHHHHHhhc
Q 031612 130 SRTRDEDHDSNSEDINK--LLFSAIVQG 155 (156)
Q Consensus 130 ~~~~~~~~~~~~~d~n~--~lfsa~v~~ 155 (156)
-... -+ .--++|. +.|+..-|.
T Consensus 96 El~~-~i---~el~~~~~Ks~~~~l~q~ 119 (165)
T PF09602_consen 96 ELSA-KI---QELLLSPSKSSFSLLSQI 119 (165)
T ss_pred HHHH-HH---HHHHcchHHHHHHHHHHH
Confidence 5554 33 2223444 777776553
No 48
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.14 E-value=30 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=17.0
Q ss_pred HHHhhhhhHHHHHHHH---HHHHHHhCCC
Q 031612 19 LLTKSNHELTMVQYKL---EKEFQQIYPD 44 (156)
Q Consensus 19 ~FqKAesDLdyIq~RL---E~Ef~~~~pd 44 (156)
+.....+||+||.+|+ .-.+...||+
T Consensus 58 ~l~~mK~DLd~i~krir~lk~kl~~~yP~ 86 (88)
T PF10241_consen 58 LLKEMKKDLDYIFKRIRSLKAKLAKQYPE 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444667888888764 4566677775
No 49
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.02 E-value=1.3e+02 Score=24.69 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHH--hCC---CCCChHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQ--IYP---DNANPMKLVSRIKKVQEDLPILKEQCRE---LLAAKQDLIDK 82 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~--~~p---d~aNPv~Ll~rL~~Iksr~~aL~~q~~~---l~aeKqel~d~ 82 (156)
...+.+......|-..+.-++..|+..=.. ..+ .+.-.-.|=.+|..+.+.+..+..+... .+...+...++
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~ 117 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPER 117 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 334445555555566666666666554333 111 2236678889999999999999887765 67778899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 031612 83 ASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 83 ir~~L~~t~~liQ~LQ~~tdle 104 (156)
++..+..++..++++......+
T Consensus 118 aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 118 AQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999886653
No 50
>PRK14629 hypothetical protein; Provisional
Probab=51.49 E-value=21 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.490 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRE 71 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~ 71 (156)
||..+++..+++|++++.+++++..
T Consensus 4 ~~~~~mkqaq~mQ~km~~~Q~eL~~ 28 (99)
T PRK14629 4 NPLDFLKNMSSFKDNIDNIKKEISQ 28 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887
No 51
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.13 E-value=1.5e+02 Score=25.12 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
...+.++....|-.+-||.|..+|-.++..+++. =+.=+.++..|++++..-...|+.+
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~---f~~a~~~v~el~~~l~~a~~~~~~~ 86 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDS---FFQAMSSVQELQDELEEALVICKNL 86 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888999999999999999999999884 2333555555555555555555543
No 52
>PRK00846 hypothetical protein; Provisional
Probab=50.51 E-value=94 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 51 LVSRIKKVQEDLPILKE---QCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~---q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
+-.||..+..++.=... .+-++.++|+..+++++..|.--.+-+..++.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44677777777765444 444567789999999999997666666666533
No 53
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.26 E-value=2.3e+02 Score=26.86 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=35.5
Q ss_pred hhhHHHHH--HHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHH
Q 031612 10 HQAIDGLV--NLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELL 73 (156)
Q Consensus 10 ~~aVd~Le--~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ 73 (156)
..|+.+|. ..+..+..||+.+..|...+. .+-.+++++..++.++..+..+.+.+.
T Consensus 172 ~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--------~~~~~~~~~~~le~el~~l~~~~e~l~ 229 (650)
T TIGR03185 172 KEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--------LPSSILSEIEALEAELKEQSEKYEDLA 229 (650)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 347888899998888765544 134566666666666666666555543
No 54
>PF15456 Uds1: Up-regulated During Septation
Probab=50.20 E-value=1.2e+02 Score=23.52 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=43.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCChhhHHHHHhHHHHHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD-----IPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td-----leplteeE~~a~~~f~~~I~ewt~ 126 (156)
.+++..+|.++..|..+|+.+-..=. +-.++|..... +.++..... ...-....++..+.....|+||..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~s----l~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~ 95 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHS----LSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQ 95 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHH
Confidence 46777888888888888887643322 33333332211 222222222 111334566778899999999999
Q ss_pred hhc
Q 031612 127 QVR 129 (156)
Q Consensus 127 ~~~ 129 (156)
.+-
T Consensus 96 eL~ 98 (124)
T PF15456_consen 96 ELW 98 (124)
T ss_pred HHH
Confidence 884
No 55
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.19 E-value=1.4e+02 Score=24.49 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=54.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHh
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQ 127 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~ 127 (156)
+|..+..++..|..+|++|...=+.++|+-++--.+.+..++-|..-.+--+-.+.=-.++..|...+.||..-
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~ 76 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNF 76 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888888888888766653211112246777888898887653
No 56
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=49.90 E-value=87 Score=21.89 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Q 031612 56 KKVQEDLPILKEQCRELLAAKQDLIDKAS----AILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 56 ~~Iksr~~aL~~q~~~l~aeKqel~d~ir----~~L~~t~~liQ~LQ~~td 102 (156)
.++|+=+--|+.-++++.++-|+|+|-.- .-|.=.++++++||.+|-
T Consensus 4 ~KLqe~sdqls~~yEK~IaeskrLIDLsIqnY~~Fl~yi~eLL~~lq~ata 54 (58)
T PF12491_consen 4 YKLQEFSDQLSDYYEKFIAESKRLIDLSIQNYHMFLRYITELLKELQSATA 54 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777788888889999999999999653 346667888889988763
No 57
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.17 E-value=1.8e+02 Score=26.65 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASA 85 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~ 85 (156)
.|..+.+-+..+.+++..|..+..++..+.+++...+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSE 163 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888877777766555443
No 58
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=49.10 E-value=1.1e+02 Score=24.29 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKE-----QCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~-----q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
.+.-++++++.+|..+.. .+++++....+-++.++..+..+.+.++.|...
T Consensus 20 ~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (151)
T PF14584_consen 20 ILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEK 75 (151)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999988853 578888888888888888888877777777654
No 59
>PF14695 LINES_C: Lines C-terminus
Probab=49.07 E-value=27 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCCC---ChHHHHHHHHHHHh
Q 031612 32 YKLEKEFQQIYPDNA---NPMKLVSRIKKVQE 60 (156)
Q Consensus 32 ~RLE~Ef~~~~pd~a---NPv~Ll~rL~~Iks 60 (156)
-||...|.+-+..+- ||-.|+++|+.+++
T Consensus 7 ~~L~~aI~rL~~k~LFPYN~~pLLrlL~~~e~ 38 (39)
T PF14695_consen 7 IRLRLAIERLVRKNLFPYNPSPLLRLLEQVES 38 (39)
T ss_pred HHHHHHHHHHHHCCCCCCChHHHHHHHHHhhc
Confidence 467778888888774 99999999998764
No 60
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=48.98 E-value=90 Score=21.80 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=41.8
Q ss_pred cchhhhHHHHHHHH---HhhhhhHHHHHHHHHHHHHHhCC-CCCC-hHH---HHHHHHHHHhhHHHHHHHHHHH
Q 031612 7 QHNHQAIDGLVNLL---TKSNHELTMVQYKLEKEFQQIYP-DNAN-PMK---LVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 7 ~~~~~aVd~Le~~F---qKAesDLdyIq~RLE~Ef~~~~p-d~aN-Pv~---Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
..+.++++.+..-+ ..++..|..-=.++..+|....- +..+ |+. -..+|..|+.|+..|+.+.+.+
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~l 83 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKL 83 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776554 44555555555666666665555 3334 653 4667778888888888777655
No 61
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=48.46 E-value=1.8e+02 Score=25.22 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
-|..|-+.+..+...+++|+..-.+++.+-.+....|+..+.....-++.|.... |.+ +.....|.+..+.|..
T Consensus 15 Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l--~~L----~~~~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 15 EPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSL--PEL----DEACQRFSSKAQKISE 88 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999989999999999988888888888744 433 3344455555555555
Q ss_pred h
Q 031612 127 Q 127 (156)
Q Consensus 127 ~ 127 (156)
.
T Consensus 89 ~ 89 (338)
T PF04124_consen 89 E 89 (338)
T ss_pred H
Confidence 4
No 62
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.35 E-value=65 Score=23.35 Aligned_cols=36 Identities=28% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 69 CRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 69 ~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
+-..+++|+-.+++++..|..-.+-+..+|.++.-.
T Consensus 27 Ln~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~ 62 (72)
T COG2900 27 LNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIAS 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 345788999999999999988777777777776654
No 63
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=48.22 E-value=21 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLI 80 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~ 80 (156)
+++|++|++|+..|.+|+-.|-+.|...-
T Consensus 121 lqKIsALEdELs~LRaQIA~IV~~qe~~~ 149 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIVAAQEQSN 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 68899999999999999999999877443
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.69 E-value=2.4e+02 Score=27.29 Aligned_cols=76 Identities=24% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 031612 16 LVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLI---DKASAILVRNR 91 (156)
Q Consensus 16 Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~---d~ir~~L~~t~ 91 (156)
++.-+.|...+++....|++.=.+..-..-.+--..+.+|+.+++++..++.+.+.+--+.+++. ++|+..|...+
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33334444444444444444332222222223333456666666666666666666666655543 34555555444
No 65
>KOG3681 consensus Alpha-catenin [Extracellular structures]
Probab=47.03 E-value=1.7e+02 Score=29.79 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=56.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHH
Q 031612 19 LLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA----------------KQDLIDK 82 (156)
Q Consensus 19 ~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae----------------Kqel~d~ 82 (156)
.|.+|-+++ +||=.||...+||++ ....|.++=+|++..|.|++=++.- =+-+|+.
T Consensus 708 ~iAeag~~m----~rlareia~qcpDs~----~k~dLLa~lerIpl~c~QLqI~Skvka~~~~~~~~~slIq~tknlmn~ 779 (835)
T KOG3681|consen 708 KIAEAGSRM----TRLAREIAKQCPDSA----IKTDLLAYLERIPLYCHQLQICSKVKATVKNLGGELSLIQATKNLMNE 779 (835)
T ss_pred HHHHHHhHH----HHHHHHHHHhCCChH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 466666666 489999999999987 2222333444556666666554433 3556777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--CCChhhHHHHHhHH
Q 031612 83 ASAILVRNRNLVQRMQVSLDIP--VANESEDASFANFK 118 (156)
Q Consensus 83 ir~~L~~t~~liQ~LQ~~tdle--plteeE~~a~~~f~ 118 (156)
+.-++..-+-..+.+++.-+.. +.++.-+.+++-|.
T Consensus 780 vvqtvk~syv~stk~~~~~~~~v~~~~~~~e~~~a~iR 817 (835)
T KOG3681|consen 780 VVQTVKASYVAATKLQQSVKGTVRNGREKAEDASAKIR 817 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHh
Confidence 7777777777777888765543 33433334444443
No 66
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.78 E-value=99 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
+=+||-.+..+++=...-++ ++.++|+.-++.+++.|..-..-+..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888776555444 4678899999999999866555444443
No 67
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.54 E-value=2.6e+02 Score=26.35 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 61 DLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 61 r~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
+-..|..+-+.|...++++-..........-+..++|++.+|+.
T Consensus 102 re~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt 145 (514)
T TIGR03319 102 KEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT 145 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33334444444444445555555555555667778899999976
No 68
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=46.52 E-value=1e+02 Score=27.39 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCCChHHHHHHHH-HHHhhHHHHHHH-H-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCC----CCChh
Q 031612 43 PDNANPMKLVSRIK-KVQEDLPILKEQ-C-R-----ELLAAKQDLIDKASAILVRNRNLVQRM-QVSLDIP----VANES 109 (156)
Q Consensus 43 pd~aNPv~Ll~rL~-~Iksr~~aL~~q-~-~-----~l~aeKqel~d~ir~~L~~t~~liQ~L-Q~~tdle----pltee 109 (156)
|.+.|+-.|+..|. +|++.++.+=.. + + .|..+|-+-+++|...|.+-+..=++| .++.|+. -+|+-
T Consensus 148 ~~~i~~~~lf~~i~~ki~~~L~~lp~~~~~~PLl~~~L~~~Qw~~Le~i~~~L~~EY~~RR~mLlkRLDVTvqSF~WSdR 227 (318)
T PF10239_consen 148 PPNITASQLFSKIEAKIEELLSKLPPGHMGKPLLKKSLTDEQWEKLEKINQALSKEYECRRQMLLKRLDVTVQSFLWSDR 227 (318)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeccHH
Confidence 34567777777665 555555543222 1 1 355678888999999999888877666 7888876 67766
Q ss_pred hHHHHHhHHHHHHHHHHhhccccc
Q 031612 110 EDASFANFKQVIDEWTVQVRSRTR 133 (156)
Q Consensus 110 E~~a~~~f~~~I~ewt~~~~~~~~ 133 (156)
-+.--..+.++...|...+.+.+.
T Consensus 228 ~k~~~~~i~~v~~~~r~~L~~~~~ 251 (318)
T PF10239_consen 228 AKEKEDEIASVYQPKREALSPKSN 251 (318)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCCC
Confidence 666566777888888777765444
No 69
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=46.36 E-value=1.3e+02 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCREL----LAAKQDLIDKASAILVRNR-NLVQRMQ 98 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l----~aeKqel~d~ir~~L~~t~-~liQ~LQ 98 (156)
+.+++.-||.+..+|.++-..| ..+|..++++| +..| .|.+++|
T Consensus 112 IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AI----n~IM~~L~k~fq 160 (166)
T PF06193_consen 112 IIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAI----NDIMKDLSKKFQ 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 4566667777777777665543 34444444443 3334 4555544
No 70
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.74 E-value=2e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQ---DLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKq---el~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
-++.|++.++.+|+++..|..+.+++-+.=. ++.++.-+.+.. -++.|...+|.-
T Consensus 51 r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~---~l~~l~~~aG~v 108 (247)
T COG3879 51 RDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED---RLEKLRMLAGSV 108 (247)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH---HHHHHHHHhccC
Confidence 6679999999999999999999998654322 333344444433 345566666643
No 71
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.08 E-value=2e+02 Score=24.20 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=45.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCC---CCChhhHHHHHhHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSL----DIP---VANESEDASFANFKQVIDEWT 125 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t----dle---plteeE~~a~~~f~~~I~ewt 125 (156)
.|+.+.++...|...|++|...=+.++|+-+.--.++....+-|..=. ++- |+.. +++..|.++++|-.
T Consensus 3 ~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~---~~l~kFs~~l~El~ 78 (215)
T cd07601 3 LLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILV---STLKQFSKVVDELS 78 (215)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHH---HHHHHHHHHHHHHH
Confidence 356677777888888888888888888887777777777766665542 211 2222 36666666666543
No 72
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=41.71 E-value=1.2e+02 Score=24.26 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLV 94 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~li 94 (156)
|--.||.+++=.|+|- +|...+++=+.++++.++.||..+.+..++|
T Consensus 115 NmhhllNeyRPhQARe-tLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 115 NMHHLLNEYRPHQARE-TLIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777764 5677777778888999999999888877765
No 73
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.97 E-value=79 Score=21.34 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHH-HHHHHhCCCC
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLE-KEFQQIYPDN 45 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE-~Ef~~~~pd~ 45 (156)
.+++.+|..-..|.+.++.-++.||. ..|...-|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~e 39 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEE 39 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHH
Confidence 45778888889999999999999998 5788888874
No 74
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.96 E-value=1.4e+02 Score=22.03 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCR------ELLAAKQDLIDKASAILVRNRNL 93 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~------~l~aeKqel~d~ir~~L~~t~~l 93 (156)
+--+|+.||++|+..+.++...++ +|+++ +..+|..|++.+..
T Consensus 7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~Q----IaAVr~Al~~~~~~ 55 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQ----IAAVRGALNGLMRE 55 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH----HHHHHHHHHHHHHH
Confidence 334789999999999998887644 45543 45566666655543
No 75
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=40.92 E-value=1.3e+02 Score=21.39 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCCCC--hhhHHHHHhHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCR------ELLAAKQDLIDKASAILVRNRNLV--QRMQVSLDIPVAN--ESEDASFANFKQ 119 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~------~l~aeKqel~d~ir~~L~~t~~li--Q~LQ~~tdleplt--eeE~~a~~~f~~ 119 (156)
.|+.||++|...+..+...++ +|+.+ +..++..|++...+| ..|..... ++.. +..+.....|..
T Consensus 6 ~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Q----i~Av~~Al~~~~~~vl~~hl~~c~~-~~~~~~~~~~~~i~el~~ 80 (85)
T PF02583_consen 6 DLLNRLKRIEGQVRGIERMIEEDRDCEDILQQ----IAAVRSALDKVGKLVLEDHLEHCLV-EAIQDEEDREEAIEELIK 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-CHCCTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-hHhcCcccHHHHHHHHHH
Confidence 689999999999999988654 45543 445666666655544 34444444 3222 355666667776
Q ss_pred HHH
Q 031612 120 VID 122 (156)
Q Consensus 120 ~I~ 122 (156)
+|+
T Consensus 81 ~i~ 83 (85)
T PF02583_consen 81 LID 83 (85)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 76
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=40.44 E-value=2.2e+02 Score=27.92 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhhHHHHHHHHHHH
Q 031612 3 DHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA-NPMKLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 3 ~~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a-NPv~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
|..||.|++|.- -|.-++.|.+|+-.= -++ |-+.++++...+|..+.++++-...+
T Consensus 48 d~~fPk~~taf~--------~E~~~n~~~~~~~~~------v~a~nt~~~~q~y~~~~q~l~~i~~l~~~L 104 (673)
T COG4192 48 DQSFPKYNTAFV--------LETRSNEIRRRIQLI------VSATNTVTLNQQYQRLQQDLTAIHALLASL 104 (673)
T ss_pred hccchhhhhhhh--------hhhhhHHHHHHHHHH------HhCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888887742 244566677776432 244 89999999999999998888766654
No 77
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=40.35 E-value=22 Score=28.53 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 031612 58 VQEDLPILKEQCRELLAAKQDLID 81 (156)
Q Consensus 58 Iksr~~aL~~q~~~l~aeKqel~d 81 (156)
+++.|..|+-.|++++.||.++-.
T Consensus 35 lqaq~hslk~E~eKla~EK~emqr 58 (135)
T PF03920_consen 35 LQAQYHSLKLECEKLASEKTEMQR 58 (135)
T ss_pred HHHHHHhhhhhcchhhcccchHHH
Confidence 444555666778899999987643
No 78
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=40.30 E-value=2.3e+02 Score=23.93 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=47.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCChhhH---HHHHhHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSL---DIPVANESED---ASFANFKQVIDE 123 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t---dleplteeE~---~a~~~f~~~I~e 123 (156)
++|+....++..+...|+.|...=+.++++.+.--.+++..++-|+.=. =..+.|++|- .++..|.+.++|
T Consensus 2 ~~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~e 78 (207)
T cd07636 2 ERLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRN 78 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888888888888877777777766665544 2224565554 555545444443
No 79
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=40.18 E-value=1.2e+02 Score=25.62 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVAN 107 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplt 107 (156)
.+++.||.|.+|+.+|..=++++-++ .+.+--++|.++.+-++.| ...|-.|.+
T Consensus 137 ~I~kdlK~l~~rVsavstVLeDvQAa---sv~R~fs~L~K~i~~l~~l-~~~Gk~~V~ 190 (200)
T PF03286_consen 137 NIIKDLKNLNARVSAVSTVLEDVQAA---SVSRQFSSLSKAIEELKDL-ANGGKEPVV 190 (200)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh---ccchHHHHHHHHHHHHHHH-HhcCcccee
Confidence 57899999999999999999998655 6788888999999999888 666766554
No 80
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=39.74 E-value=35 Score=24.73 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCChhhHHHHHhHHHHHHHHHHhhccc
Q 031612 105 VANESEDASFANFKQVIDEWTVQVRSR 131 (156)
Q Consensus 105 plteeE~~a~~~f~~~I~ewt~~~~~~ 131 (156)
.||++|+.-+..|..-+..|..+|...
T Consensus 39 ~Lt~~E~~eL~~y~~~v~~y~~~l~~~ 65 (76)
T PF06394_consen 39 DLTPDEQQELKTYQKKVAAYKEQLQQQ 65 (76)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999743
No 81
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.27 E-value=1.1e+02 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLID 81 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d 81 (156)
....+|+.|.+|++.+..|..+++.+..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777665543
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.23 E-value=4.3e+02 Score=27.96 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCChhhHHHHHhHHHHHHHHHHhhcccccccc
Q 031612 76 KQDLIDKASAILVRNRNLVQRMQVSLDIP---VANESEDASFANFKQVIDEWTVQVRSRTRDED 136 (156)
Q Consensus 76 Kqel~d~ir~~L~~t~~liQ~LQ~~tdle---plteeE~~a~~~f~~~I~ewt~~~~~~~~~~~ 136 (156)
|+.....|.+.|-.-..-.--+..-.|.+ .||.+|.....+++.=|+.-+.+++..+.+.+
T Consensus 746 k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~ 809 (1200)
T KOG0964|consen 746 KGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERI 809 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555544322222233334433 78999999999999999999988886665333
No 83
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.13 E-value=1.4e+02 Score=21.20 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCCChHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031612 44 DNANPMKLVSRIKKVQEDLPILKEQCRE------LLAAKQDLIDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 44 d~aNPv~Ll~rL~~Iksr~~aL~~q~~~------l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
+.-.|-.+-.....||-+++..++.++. -..+|++-+...+..+..-+.+++.+....
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446778888899999999999998888 367788899999999999999999987654
No 84
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.11 E-value=40 Score=26.73 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA 46 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a 46 (156)
+.+..+-..-..|.+.|-+++...+...+|+.+
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 334444455566666677777777777776654
No 85
>PF02413 Caudo_TAP: Caudovirales tail fibre assembly protein; InterPro: IPR003458 This family contains Bacteriophage T4 gp38 and related bacterial prophage and phage proteins. Gene 38 of phage T4 codes for a protein containing 183 amino acid residues with molecular weight of 22.3 kDa. Together with genes 36 and 37, whose products are structural proteins of the fibre distal part, gene 38 forms one transcription unit. Gp38, is a chaperone, which is required for assembly of the distal part of the long fibres and which is absent from the mature phage particle. In the absence of gp38 gp37, which is a component of the distal part of the long tail fibre, fails to oligomerise. The carboxy-terminal region of gp37 forms the tip of the distal fibre that interacts with the cell receptors. Functionally the role of gp38 can be replaced by pTfa of Bacteriophage lambda [, , ]. The function of many of the other members of this family remain to be elucidated.
Probab=39.02 E-value=1.1e+02 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHhHHH
Q 031612 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQ 119 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~ 119 (156)
......|.-||-..++.-+|++|++.+...+.
T Consensus 76 ~~A~~~I~~lqda~~lg~atd~e~~~L~~Wk~ 107 (130)
T PF02413_consen 76 AEASEAIAPLQDAVDLGIATDEEKARLKAWKK 107 (130)
T ss_pred HHHHHHHHHhHHHHHhccCChHHHHHHHHHHH
Confidence 34455667799999999999999988865443
No 86
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=38.58 E-value=1.7e+02 Score=25.28 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=27.9
Q ss_pred CCCCcc--chhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 031612 2 GDHNFQ--HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 2 ~~~~~~--~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
.|-++| .|..++.+|+..-.. ..++.|-+.-+++++++..+..|...++.-
T Consensus 20 yDI~vp~~~Y~~ei~~L~~~i~~--------------------~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h 72 (298)
T PF11262_consen 20 YDIYVPKELYDEEIERLEKEISQ--------------------MSRATISKKKKEKERLKNLIDKLPEELKKH 72 (298)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHH--------------------hccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 466666666655544 333455555555666665555555555443
No 87
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=38.53 E-value=1.1e+02 Score=19.64 Aligned_cols=43 Identities=9% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCRE---LLAAKQDLIDKASAILVRNRNLVQR 96 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~---l~aeKqel~d~ir~~L~~t~~liQ~ 96 (156)
.|..|.+.+..|+..+.+ ...+|.+++|.|-..+..+..-|..
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 50 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKK 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHH
Confidence 455666666666666655 4556999999999988887776654
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.35 E-value=1.5e+02 Score=26.68 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=34.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
=++|..+.+++..|..+|+.+.++.-++...+..+-...+.|.-+|+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~ 279 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQ 279 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888887777777777666655543
No 89
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=38.23 E-value=2.4e+02 Score=23.68 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCChhhH---HHHHhHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD---IPVANESED---ASFANFKQVIDE 123 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td---leplteeE~---~a~~~f~~~I~e 123 (156)
++|..+..++..|..+++.|...=+.++++.+.--.+++.-++-|+.=.- ..+.|++|. .++..|.++|+|
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~e 78 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIET 78 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888888888888888877777765541 124455444 444445444443
No 90
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.12 E-value=2.3e+02 Score=25.55 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHH---HHHHHHhCCCC--CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKL---EKEFQQIYPDN--ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RL---E~Ef~~~~pd~--aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
...|+.|...+..|..|.-....++ .-.+....+-+ ..=-.||..|.+++.++..|...++.++-+|+|++.-=-
T Consensus 85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888866655433 22333222211 245689999999999999999999999999999985433
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 031612 85 AILVRNRNLVQRMQVSLDI 103 (156)
Q Consensus 85 ~~L~~t~~liQ~LQ~~tdl 103 (156)
+-=.+.=.+-++|....|.
T Consensus 165 ~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 165 AYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3333344445555555554
No 91
>PRK09303 adaptive-response sensory kinase; Validated
Probab=37.80 E-value=2.6e+02 Score=23.99 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHH--HHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLE--KEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQCR-----ELLAAKQDLIDK 82 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE--~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~~-----~l~aeKqel~d~ 82 (156)
.+.-.|..-|.......+.++.+++ .+|.....+. .||+..+ ..-...|..... ......+++.+.
T Consensus 125 ~~~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i------~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 198 (380)
T PRK09303 125 QELLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAA------SLALETLELGQIDEDTELKPALIEQLQDQ 198 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHH------HHHHHHHhccCccccchhhHHHHHHHHHH
Confidence 3444455555455555555555543 3555555555 3897543 222223322111 122346667777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 031612 83 ASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 83 ir~~L~~t~~liQ~LQ~~tdle 104 (156)
++..+..-..|+..|..-+...
T Consensus 199 ~~~~~~~l~~li~~ll~~~~~~ 220 (380)
T PRK09303 199 ARRQLEEIERLITDLLEVGRTR 220 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777776655543
No 92
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=37.67 E-value=2.5e+02 Score=23.71 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhHHHHH-HHHHHHHHHhCCCCCChHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HH
Q 031612 16 LVNLLTKSNHELTMVQ-YKLEKEFQQIYPDNANPMK-LVSRIKKVQEDLPILKEQCRELLAAKQDLID----------KA 83 (156)
Q Consensus 16 Le~~FqKAesDLdyIq-~RLE~Ef~~~~pd~aNPv~-Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d----------~i 83 (156)
+-.-|.+--.+|..++ +|...|-.+.|-+.- +. ==.|+.+++.++..-..+-..+...|++.-+ ..
T Consensus 89 ~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~--ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 89 IYRDFAQQTARLADVEIRRAQLEAQKAQLERL--IAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555565554 456666666665510 00 0257888999999988888888888876644 46
Q ss_pred HHHHHHHHHHHHHHHhhcCCC
Q 031612 84 SAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 84 r~~L~~t~~liQ~LQ~~tdle 104 (156)
++.|.+.-.-|+.||.+.+-+
T Consensus 167 qaQL~~lQ~qv~~Lq~q~~~~ 187 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQRQANEP 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 788999999999999998766
No 93
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=37.63 E-value=3.1e+02 Score=24.70 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031612 48 PMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 48 Pv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td 102 (156)
=..|+.+++.||++-..=...+++|-..=| -.|.+.+.|..+|+++++||--++
T Consensus 66 i~~L~~~i~~ik~kA~~sE~~V~~it~dIk-~LD~AKrNLT~SIT~LkrL~MLv~ 119 (383)
T PF04100_consen 66 IQELFEKISEIKSKAEESEQMVQEITRDIK-QLDNAKRNLTQSITTLKRLQMLVT 119 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777887777664432222222222111 235555566666666666665443
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=37.56 E-value=1.7e+02 Score=23.58 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCChhhHHHHHhHHHHHHHHHHhhcc
Q 031612 70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSL-DIPVANESEDASFANFKQVIDEWTVQVRS 130 (156)
Q Consensus 70 ~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t-dleplteeE~~a~~~f~~~I~ewt~~~~~ 130 (156)
+.++.++.-.++.+..+|..-...-+-|.... |+++.++.....-..|---|=||...|-.
T Consensus 45 q~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee 106 (173)
T PRK01773 45 QRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEE 106 (173)
T ss_pred HHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHh
Confidence 45666777788888888888777777788777 65533332221233667777788888753
No 95
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=37.47 E-value=1.3e+02 Score=26.65 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCC---ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 31 QYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 31 q~RLE~Ef~~~~pd~a---NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
|..||.|-.+..-+.| +|-.|-++...++ .++.-++.++..|.++..++.
T Consensus 65 q~nlEielLkleKeTADltH~~~L~~K~~~Lq----~m~shLe~VLk~K~~Lr~RLq 117 (277)
T PF15003_consen 65 QLNLEIELLKLEKETADLTHPDYLAEKCEALQ----SMNSHLEAVLKEKDRLRQRLQ 117 (277)
T ss_pred hhhHHHHHHHhhcchHhhhCHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Confidence 3455666666666655 9999999988887 788888888888888877754
No 96
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=37.46 E-value=1e+02 Score=19.17 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=26.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ 95 (156)
.+|++.=.++..+-..+-..+.+|.+++|+|...+..+-.-++
T Consensus 15 ~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~ 57 (66)
T smart00397 15 EQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLK 57 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444445555667788999999888876655544
No 97
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=37.30 E-value=1.7e+02 Score=23.39 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC--CCCCh------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 12 AIDGLVNLLTKSNHELTMVQYKLEKEFQQIYP--DNANP------MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 12 aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~p--d~aNP------v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i 83 (156)
.+-.|......-=..|--.-..+..=+.-.-| +.+|. -.++++|.++++...++.+++-.-..+..++++++
T Consensus 10 ~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~~Ra~~v~k~ 89 (150)
T PF02252_consen 10 KIVELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFSARAKAVSKA 89 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433334444444455555556667 23344 35689999999999999988888887777665554
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCChhhHHHHHhHHHHHHHHHH
Q 031612 84 SAILVRNRNLVQRMQVSLDIP----VANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 84 r~~L~~t~~liQ~LQ~~tdle----plteeE~~a~~~f~~~I~ewt~ 126 (156)
.+...++ .+.|-|+..|.+++.++-|=..
T Consensus 90 --------------~K~p~v~DY~~~v~e~Dek~~~~lr~~~~elRn 122 (150)
T PF02252_consen 90 --------------AKYPHVEDYRQAVHELDEKEYISLRLIVLELRN 122 (150)
T ss_dssp --------------HH-TTBTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554 4556677788888888776544
No 98
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=2e+02 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhC
Q 031612 13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIY 42 (156)
Q Consensus 13 Vd~Le~~FqKAesDLdyIq~RLE~Ef~~~~ 42 (156)
.+.+..-+.++.+|++-+.+|++.|.....
T Consensus 52 ~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~ 81 (193)
T COG0576 52 LEELKDKYLRAQAEFENLRKRTEREREEAK 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777776654
No 99
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=36.87 E-value=2e+02 Score=22.26 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
+.++.--...-+||-.-.+..|+- ..+.|+- ..|-.=++||+++..++...-.+.++...++.++...++..|..
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~L-IdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYL-IDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556776666777664 4678885 47888899999999999999999999999999999999887754
No 100
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=36.79 E-value=3.5e+02 Score=25.07 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 031612 27 LTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL----LAAKQDLIDKASAILVRNRNLVQRMQVS-- 100 (156)
Q Consensus 27 LdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l----~aeKqel~d~ir~~L~~t~~liQ~LQ~~-- 100 (156)
+--+|.|...|+++..-. |...||++|-.|..-...|++-.+.+ -.++.+ .+ +..+++|.+.
T Consensus 291 ~~~LQ~rI~eEikkk~~k--gs~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~---ev-------~~~V~EL~~~~~ 358 (389)
T PF05633_consen 291 FISLQERINEEIKKKERK--GSCGLLKELQQVEASVRELHELIDSFQFPLEEEKEE---EV-------REAVEELARVCE 358 (389)
T ss_pred HHHHHHHHHHHHhhcccc--CcchHHHHHHHHHHHHHHHHHHHHhccCCcchhHHH---HH-------HHHHHHHHHHHH
Confidence 456899999999997754 47889999998887777776544442 122222 22 2223333332
Q ss_pred ---cCCCCCChhhHHHHHhHHHHHHHHHHh
Q 031612 101 ---LDIPVANESEDASFANFKQVIDEWTVQ 127 (156)
Q Consensus 101 ---tdleplteeE~~a~~~f~~~I~ewt~~ 127 (156)
-|+.|| |+.+-.=|..||..=++-
T Consensus 359 ~L~~GLdpL---erqVre~Fh~IV~sR~el 385 (389)
T PF05633_consen 359 ALSQGLDPL---ERQVREVFHRIVRSRTEL 385 (389)
T ss_pred HHHcccHHH---HHHHHHHHHHHHHhhHHH
Confidence 267899 666666677777654443
No 101
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=36.57 E-value=4.7e+02 Score=26.50 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhh-------HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhH
Q 031612 13 IDGLVNLLTKSNHE-------LTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDL 62 (156)
Q Consensus 13 Vd~Le~~FqKAesD-------LdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~ 62 (156)
.+.|...|.||++. |-.=--+|..||.+..+.-.|=-.|-+-+.+|++..
T Consensus 488 L~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 488 LENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 45556678898772 333346788899999887666555555555554444
No 102
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=36.27 E-value=1.7e+02 Score=23.61 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031612 24 NHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI 103 (156)
Q Consensus 24 esDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdl 103 (156)
+.|...|..+--.=-++.|||.- +.-...-+.++.++...++.+..+|..-..--+-|....|+
T Consensus 19 ~~d~~~L~~~yr~lq~~~HPD~~----------------~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 19 ALDEAALDAAYRTVQAQVHPDRF----------------AAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC----------------CCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 34555555555555566667641 01111123344555567777777777777777777777787
Q ss_pred CCCChhhHHH-HHhHHHHHHHHHHhhcc
Q 031612 104 PVANESEDAS-FANFKQVIDEWTVQVRS 130 (156)
Q Consensus 104 eplteeE~~a-~~~f~~~I~ewt~~~~~ 130 (156)
+. +.++.+. -..|--=|=||...|-.
T Consensus 83 ~~-~~e~~~~~d~~fLme~mE~rE~lee 109 (176)
T PRK03578 83 DV-QAENNTAMPPAFLMQQMEWREAIED 109 (176)
T ss_pred CC-ccccCCCCCHHHHHHHHHHHHHHHH
Confidence 63 3333222 23556666678888753
No 103
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=36.25 E-value=1.8e+02 Score=21.54 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPV 105 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdlep 105 (156)
.+++.+|-+.+-.|-..+--|=.....+-.+++..|..|+..-+++|++.+-.|
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~~~ 78 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSKAP 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 556677777777777666666666667777888888888888888998888544
No 104
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.98 E-value=2e+02 Score=22.14 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=46.4
Q ss_pred ChHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCChhhHHHHHhHHHHH
Q 031612 47 NPMKLVSR----IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP-VANESEDASFANFKQVI 121 (156)
Q Consensus 47 NPv~Ll~r----L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle-plteeE~~a~~~f~~~I 121 (156)
+-+.++++ |+....++.+|+.++..+.+++..+-+-|-+....+=++-........+. -+ .+=+.-|...-+.+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el-~~l~~ry~t~Lell 91 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQEL-EELQQRYQTLLELL 91 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 44555554 56788999999999999999988776666554444322211111111121 11 11223455666666
Q ss_pred HHHHHhh
Q 031612 122 DEWTVQV 128 (156)
Q Consensus 122 ~ewt~~~ 128 (156)
+|=+.+|
T Consensus 92 GEK~E~v 98 (120)
T PF12325_consen 92 GEKSEEV 98 (120)
T ss_pred cchHHHH
Confidence 6666655
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.83 E-value=3.2e+02 Score=24.43 Aligned_cols=70 Identities=27% Similarity=0.281 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 30 VQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKE------QCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 30 Iq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~------q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
.-.|||+-|.++--.-+---.|+++|+.|..++..-+. .++++.++=.++....+..-...-.+.++.|.
T Consensus 115 ~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 115 EIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888766656667899999999998887664 44456566555555555555554455544443
No 106
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=35.82 E-value=4.1e+02 Score=25.67 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-----CCC-CCCh---------HHHH----------HHHHHHH----h
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQI-----YPD-NANP---------MKLV----------SRIKKVQ----E 60 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~-----~pd-~aNP---------v~Ll----------~rL~~Ik----s 60 (156)
...+..+..-+.++...++.++.+|....... .|. ..-+ -.|- +++..++ +
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~e 993 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIE 993 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34556666667777777777777776533211 111 0001 0111 2233344 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 61 DLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 61 r~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
||.-|..|+++|..++.++.+.|...-..
T Consensus 994 r~~~l~~q~~dL~~~~~~L~~~i~~i~~~ 1022 (1179)
T TIGR02168 994 EYEELKERYDFLTAQKEDLTEAKETLEEA 1022 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777666666544333
No 107
>PRK04406 hypothetical protein; Provisional
Probab=35.73 E-value=1.6e+02 Score=20.87 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRM 97 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~L 97 (156)
+=+||-.+..+++=+..-++ ++.++|+.-++.+++.|..-..-+..+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577777777765555444 467788888999998885544444333
No 108
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=35.60 E-value=1.3e+02 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLID 81 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d 81 (156)
-=+.+|+|||++++....|+.+-.+|..+=..+.+
T Consensus 221 cr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 221 CRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 44678999999999999999998888776554443
No 109
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=35.45 E-value=2.2e+02 Score=22.44 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLI---DKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~---d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
.|......|.++=.+|...|++|+.+|..+. +.|.+-|.= .+-+-.+.+...-|+++-. ...|.+.-.-||+=-.
T Consensus 32 ~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y-F~~Ld~itr~Ln~p~~sV~-~~~F~~~L~~LD~cl~ 109 (157)
T PF04136_consen 32 ELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQY-FEELDPITRRLNSPGSSVN-SDSFKPMLSRLDECLE 109 (157)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HhhHHHHHHHHcCCCCccc-chHHHHHHHHHHHHHH
Confidence 4666778889999999999999999998654 455555532 3444444445455545533 6678777777777666
Q ss_pred hhc
Q 031612 127 QVR 129 (156)
Q Consensus 127 ~~~ 129 (156)
=+.
T Consensus 110 Fl~ 112 (157)
T PF04136_consen 110 FLE 112 (157)
T ss_pred HHH
Confidence 554
No 110
>PF14772 NYD-SP28: Sperm tail
Probab=35.40 E-value=1.1e+02 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=27.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 57 KVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
-|...+..++..|..+...|-.+|..+..-|..
T Consensus 55 eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~ 87 (104)
T PF14772_consen 55 ELRKEIEEQKQACERIIDRKDALIKELQQELKE 87 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688889999999999999999988887754
No 111
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=35.38 E-value=45 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCC-CCChhhHHHHHhHHHHH
Q 031612 89 RNRNLVQRMQVSLDIP-VANESEDASFANFKQVI 121 (156)
Q Consensus 89 ~t~~liQ~LQ~~tdle-plteeE~~a~~~f~~~I 121 (156)
++++++-.|+...|++ |.++=...-|++-+.++
T Consensus 35 ~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~ 68 (73)
T TIGR01688 35 GTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIV 68 (73)
T ss_pred HHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHH
Confidence 4689999999999999 88776666666666554
No 112
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=35.16 E-value=1.8e+02 Score=25.90 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCC
Q 031612 48 PMKLVSRIKKVQEDLPILKEQCRELL--------------AAKQDLIDKA----SAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 48 Pv~Ll~rL~~Iksr~~aL~~q~~~l~--------------aeKqel~d~i----r~~L~~t~~liQ~LQ~~tdle 104 (156)
=+..|.+|..||.++--+.-.++-+- ++|-++...+ .+.|.+...+++|||+-...+
T Consensus 49 l~s~L~QIt~iQaeI~q~nlEielLkleKeTADltH~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe 123 (277)
T PF15003_consen 49 LFSRLRQITNIQAEIDQLNLEIELLKLEKETADLTHPDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQE 123 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Confidence 34567788888888886666665543 3444555554 455567788999999988877
No 113
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.10 E-value=2e+02 Score=27.30 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
+=.+|+.+++.+..++++|..+=+.|..+-++|
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999998888777777665554
No 114
>PRK13694 hypothetical protein; Provisional
Probab=35.00 E-value=89 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
..++||.+|.++-+.|.++.+++.++=|
T Consensus 16 ~fIERIERLEeEkk~i~~dikdVyaEAK 43 (83)
T PRK13694 16 AFIERIERLEEEKKTISDDIKDVYAEAK 43 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777644
No 115
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=34.96 E-value=30 Score=22.13 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=16.1
Q ss_pred CCCCccchhhhHHHHHHHHHh
Q 031612 2 GDHNFQHNHQAIDGLVNLLTK 22 (156)
Q Consensus 2 ~~~~~~~~~~aVd~Le~~FqK 22 (156)
.|++||.+..--+.+..-|+.
T Consensus 7 ~D~~FPK~~~~~~eI~~Yle~ 27 (46)
T PF06855_consen 7 QDHSFPKQETDFDEISSYLES 27 (46)
T ss_dssp TSTTS-TT-SSHHHHHHHHHC
T ss_pred hCcCCCCCCCCHHHHHHHHHH
Confidence 599999999998888877765
No 116
>PHA03155 hypothetical protein; Provisional
Probab=34.82 E-value=73 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=21.3
Q ss_pred hCCCCCChHHHHHHHHHHHhhHHHHHHHHH
Q 031612 41 IYPDNANPMKLVSRIKKVQEDLPILKEQCR 70 (156)
Q Consensus 41 ~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~ 70 (156)
+-|.+.-+-.|.++|.+++-|-.+|+.++.
T Consensus 3 s~~~~~tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 3 SGRACADVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677788888888888877776553
No 117
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.80 E-value=3.3e+02 Score=24.20 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 25 HELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 25 sDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
-|+.-+.-+|+.+.+.+ -.|++++..++++|..+.++++.|-.++..+-...+..+..-..+=.++-
T Consensus 135 e~~ee~kekl~E~~~Ek-------eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 135 EDYEELKEKLEELQKEK-------EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 34444555555555443 47889999999999999999999988888887777766655554444443
No 118
>PRK04325 hypothetical protein; Provisional
Probab=34.79 E-value=1.6e+02 Score=20.65 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRE---LLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~---l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
.+=+||-.|..++.=...-+++ +.++|+.-++.+++.|..-..-+..+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557888888888766655554 677899899999988866555555554
No 119
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.35 E-value=2.6e+02 Score=22.97 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
-.+-.+.++++.+...|..+.+.|-.+-..+.....+.-..-.+|++-|-+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777766666555555555554443
No 120
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.27 E-value=5.5e+02 Score=26.66 Aligned_cols=47 Identities=4% Similarity=0.069 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCChhhH-HHHHhHHHHHHHHHHhhcc
Q 031612 84 SAILVRNRNLVQRMQVSLDIP-VANESED-ASFANFKQVIDEWTVQVRS 130 (156)
Q Consensus 84 r~~L~~t~~liQ~LQ~~tdle-plteeE~-~a~~~f~~~I~ewt~~~~~ 130 (156)
+........++++|+...+.+ |-|++|= .-..+|.+.+.+|..++..
T Consensus 275 ~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~ 323 (1311)
T TIGR00606 275 KSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVD 323 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335566777777766533 4454442 3344888888888887753
No 121
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.18 E-value=1.8e+02 Score=20.97 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ 95 (156)
|-+=|..|+.++.++.......-..+.+.-.+|..++.. |.+|+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~E-m~~ir 45 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQE-MQQIR 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHH
Confidence 445677888888888887777777777777777776665 44444
No 122
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=33.56 E-value=23 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHH
Q 031612 32 YKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILK 66 (156)
Q Consensus 32 ~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~ 66 (156)
.||.+||--+.++=+==+.||+++..++.++..|+
T Consensus 49 ~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 49 RRLHRDLGINLEGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58888888777776666778999999988888775
No 123
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.43 E-value=3.3e+02 Score=23.83 Aligned_cols=79 Identities=27% Similarity=0.333 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHH------------HHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 031612 9 NHQAIDGLVNLLTKSNHELTMVQYKLEK------------EFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAK 76 (156)
Q Consensus 9 ~~~aVd~Le~~FqKAesDLdyIq~RLE~------------Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeK 76 (156)
-..|-..|..+=.|+++++.+.|..|++ =|-..|-|+-=||+.++ |..+...++.|+++.++=+.+=
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888877764 25667888889999876 5566666666666665555554
Q ss_pred HHHHHHHHHHHH
Q 031612 77 QDLIDKASAILV 88 (156)
Q Consensus 77 qel~d~ir~~L~ 88 (156)
.++...++..|.
T Consensus 144 ~e~~~~el~~l~ 155 (258)
T PF15397_consen 144 NEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 124
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=33.09 E-value=1e+02 Score=21.24 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHhhcCCC-CCChhhHHHH
Q 031612 77 QDLIDKASAILVRNR--NLVQRMQVSLDIP-VANESEDASF 114 (156)
Q Consensus 77 qel~d~ir~~L~~t~--~liQ~LQ~~tdle-plteeE~~a~ 114 (156)
+.|++.+|..++..+ +=..++.+..|++ ++|++|....
T Consensus 29 ~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i 69 (78)
T PF01466_consen 29 KGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEI 69 (78)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHH
Confidence 456676776666554 4578899999999 8887776554
No 125
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.89 E-value=86 Score=26.62 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~a 74 (156)
++++++|.+++++++.+++...
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887776443
No 126
>PRK00736 hypothetical protein; Provisional
Probab=32.76 E-value=1.7e+02 Score=20.24 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 52 VSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
=.||..+..++.=...-++ ++.++|+.-+|.+...|..-..-+..++.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3577777777766554444 46788999999999998665555555543
No 127
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.62 E-value=3.5e+02 Score=26.05 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612 54 RIKKVQEDLPILKEQ----CRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFA 115 (156)
Q Consensus 54 rL~~Iksr~~aL~~q----~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~ 115 (156)
||++|.+++..|... +-.|+..|.+.++--++.|. ..+.|+.++.-|.+ |+.+|++-..
T Consensus 356 ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR--v~ikqeilr~~G~~-L~~~EE~Lr~ 418 (508)
T KOG3091|consen 356 RINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR--VMIKQEILRKRGYA-LTPDEEELRA 418 (508)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCc-CCccHHHHHH
Confidence 555666666666522 22467778888877777773 45667888888885 6655554443
No 128
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=32.57 E-value=2.6e+02 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 031612 80 IDKASAILVRNRNLVQRMQVSLDIPVANESEDASF 114 (156)
Q Consensus 80 ~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~ 114 (156)
+..+++.+.....+++++....+.+..+++...-|
T Consensus 160 l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 194 (292)
T PF01544_consen 160 LSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYL 194 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 34445566666666656665444444544443333
No 129
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=32.57 E-value=3.2e+02 Score=23.47 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQ-----------------CRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANES 109 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q-----------------~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdlepltee 109 (156)
+.-.|...+..|+..+..++.. +.+.+.+-..-++.++..+...++...++..-.|-.|-+..
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~ 354 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMS 354 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 5555666666666666665555 44555566677888888888899999999999987765666
Q ss_pred hHHHHHhHHHHHHHH
Q 031612 110 EDASFANFKQVIDEW 124 (156)
Q Consensus 110 E~~a~~~f~~~I~ew 124 (156)
-++-|..|.+.+.++
T Consensus 355 ~~~ff~~l~~F~~~f 369 (370)
T PF02181_consen 355 PEEFFKILSQFIDMF 369 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 777888888888776
No 130
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=32.41 E-value=2e+02 Score=26.07 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh----CCCCCChHHHHHHHHH-HH-----------hhHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQI----YPDNANPMKLVSRIKK-VQ-----------EDLPILKEQCRELL 73 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~----~pd~aNPv~Ll~rL~~-Ik-----------sr~~aL~~q~~~l~ 73 (156)
...|++|..+++. ..-|+.||+.. -|.+-||+|+.-...- |. +--+++.+-|++|-
T Consensus 241 r~~v~Gl~~lL~~--------R~~~K~e~r~~~T~i~~~enNPLKf~~~~~~al~~m~~~~~~g~Ls~~~Ai~ea~~Dl~ 312 (396)
T TIGR03354 241 RAMVEGLLQLLRA--------RAELKNELRLNQTTIRPAENNPLKFSADYDEALAVLLAPRSPGHLSAEAAIEEAFRDLR 312 (396)
T ss_pred HHHHHHHHHHHHH--------HHHHHhhhcccceeecccCCCCcccCCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 3455555555543 44566666632 2234599888544422 11 33478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031612 74 AAKQDLIDKASAILVRNRN 92 (156)
Q Consensus 74 aeKqel~d~ir~~L~~t~~ 92 (156)
.=|.-++..|++.|.....
T Consensus 313 ~Hq~a~~aa~~~Al~~~l~ 331 (396)
T TIGR03354 313 AHQVALLAAVRAALRRMLD 331 (396)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999977543
No 131
>PRK01203 prefoldin subunit alpha; Provisional
Probab=32.38 E-value=1.5e+02 Score=23.39 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
.+.+.|.-+++....|..++..|-.++.+..+++.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie 38 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTIS 38 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998866443
No 132
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=32.34 E-value=2.9e+02 Score=22.91 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHhCCCCC--ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 031612 37 EFQQIYPDNA--NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASF 114 (156)
Q Consensus 37 Ef~~~~pd~a--NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~ 114 (156)
|-....|+.+ +|-.+-.++++||.||.-=-.-|+ |--.+..-++|+|| .-+|.+++--+++|
T Consensus 49 ~s~s~~~~~~~~~~k~is~kI~~iK~RYTRRiSLfE------------iTGIiaESyNLLqR----GRlPLv~dlsdeT~ 112 (167)
T PF05320_consen 49 ESASENIEDQTSVPKQISEKISAIKKRYTRRISLFE------------ITGIIAESYNLLQR----GRLPLVSDLSDETL 112 (167)
T ss_pred hhhhcCcccccchHHHHHHHHHHHHHHHHhhhhHHH------------HHHHHHHHHHHHHc----cccccccccchHHH
Confidence 3444555543 788889999999999975443332 22233445666654 56887788788888
Q ss_pred --HhHHHHHHHHHHhhcccc
Q 031612 115 --ANFKQVIDEWTVQVRSRT 132 (156)
Q Consensus 115 --~~f~~~I~ewt~~~~~~~ 132 (156)
+-++.+|.|-...+-|+-
T Consensus 113 k~n~L~vvi~EIeEg~CPIV 132 (167)
T PF05320_consen 113 KDNILHVVIKEIEEGTCPIV 132 (167)
T ss_pred HHhHHHHHHHHHhcCCCcEE
Confidence 357788888888776653
No 133
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=32.20 E-value=4.5e+02 Score=24.97 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHH----------HHHHHhCCCCC-ChHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLE----------KEFQQIYPDNA-NPMKLVSRIK 56 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE----------~Ef~~~~pd~a-NPv~Ll~rL~ 56 (156)
...++.|...+...-..+..++++|. .+|...||++- ||--+-+.++
T Consensus 270 ~k~id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~R~~Fi~~f~gnEt~~~w~~~~~~ 327 (619)
T PRK05658 270 SKQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLFQGNELDITWLEKEIA 327 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccCCcCCHHHHHHHHh
Confidence 45677777777777777777777765 46899999875 7775555443
No 134
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.95 E-value=2.2e+02 Score=24.19 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhc
Q 031612 52 VSRIKKVQEDLP--ILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 52 l~rL~~Iksr~~--aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~ 129 (156)
.+||+++..+++ .+=.-+..|+..|++..+.+-....-.-..+.. ....|+|+|+.+.-..-..+.....++-+.+.
T Consensus 21 a~rl~~La~~~p~~~~L~~~~~l~~~Q~~~~~~~~~~~~~~~~~~~~-~~~~g~PlL~~~~~~~d~~~~~~l~~ll~~l~ 99 (290)
T PF04216_consen 21 AERLRALAEKHPLAEYLDFFAELAEAQAEAAAELPAPAPLPAERVAR-RLEQGMPLLAREPLPRDPAWRAALRELLAALA 99 (290)
T ss_dssp HHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHCS--------HHHHHH-HHHTT--TT-HHHHHHH-TTHHHHHHHHHT--
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHH-HhhcCCCCCCccccCcCHHHHHHHHHHHHHHh
Confidence 467777777744 333445678888888877774444333222222 55677888865554433345556666666665
Q ss_pred cc
Q 031612 130 SR 131 (156)
Q Consensus 130 ~~ 131 (156)
..
T Consensus 100 ~~ 101 (290)
T PF04216_consen 100 ES 101 (290)
T ss_dssp S-
T ss_pred hc
Confidence 44
No 135
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=31.91 E-value=5.2e+02 Score=25.65 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCC
Q 031612 28 TMVQYKLEKEFQQIYP-DNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRN--LVQRMQVSLDIP 104 (156)
Q Consensus 28 dyIq~RLE~Ef~~~~p-d~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~--liQ~LQ~~tdle 104 (156)
-||..+|-.=|....- ..+||+.|+.-|..-=.++ .+... .++.-.+-|...+..-+. +-.+.|++. +.
T Consensus 422 Rf~~~~ls~a~~~~~~~~~~nP~~~l~~Le~~i~~~-~~~~e------~~~~yl~fi~~~~~~eY~e~i~~Evq~A~-l~ 493 (644)
T PRK15455 422 RFAFKILSRVFNFDHTEVAANPVHLMYVLEQQIERE-QFPQE------TEERYLEFIKGYLAPRYAEFIGKEIQTAY-LE 493 (644)
T ss_pred HHHHHHHHHHHccCcccccCCHHHHHHHHHHHHhhc-cCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4677777776755433 2459999999887522222 22111 122333333222222111 223566665 55
Q ss_pred CCChhhHHHHHhHHHHHHHHHHhhc---cccccccccCChhhHHHHHHH
Q 031612 105 VANESEDASFANFKQVIDEWTVQVR---SRTRDEDHDSNSEDINKLLFS 150 (156)
Q Consensus 105 plteeE~~a~~~f~~~I~ewt~~~~---~~~~~~~~~~~~~d~n~~lfs 150 (156)
.-+|.-+.-|.++-.-++-|...-. |.||.+- +.+-+|+.|=|
T Consensus 494 s~~e~~~~Lf~rYvd~a~a~i~~~k~rDp~TGe~~---~pd~~~~~lrs 539 (644)
T PRK15455 494 SYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLF---DREALNAELEK 539 (644)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCeecCCcccccc---ChhHHHHHHHH
Confidence 4555556778899999999988764 8888443 55445666544
No 136
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.82 E-value=1.9e+02 Score=20.45 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 56 KKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 56 ~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
..++++-..|...-+.+-.++..-.++|++.|.+
T Consensus 35 ~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 35 NELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555556666666666666666666654
No 137
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.32 E-value=1.1e+02 Score=22.11 Aligned_cols=28 Identities=14% Similarity=0.499 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
..++||.+|.++...|.++.+++.++=|
T Consensus 8 ~~ieRiErLEeEk~~i~~dikdVyaEAK 35 (74)
T PF10073_consen 8 QFIERIERLEEEKKAISDDIKDVYAEAK 35 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888887744
No 138
>PLN00064 photosystem II protein Psb27; Provisional
Probab=31.32 E-value=1.6e+02 Score=24.50 Aligned_cols=46 Identities=7% Similarity=0.369 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhccccc
Q 031612 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTR 133 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~~ 133 (156)
..|+.+|..|+...+|+--++.-.++-+.+.+-|.+|-+.-|+...
T Consensus 68 ~DT~aVi~~lr~tI~L~~ddp~~a~a~aeaR~~iNdyvSrYRr~~~ 113 (166)
T PLN00064 68 KETKDVIGKVRSTINMDKTDPNVADAVAELRETSNSWVAKYRREKA 113 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3578999999999999976666677788999999999999986554
No 139
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=30.75 E-value=81 Score=25.50 Aligned_cols=67 Identities=10% Similarity=0.219 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFA 115 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~ 115 (156)
..++-+|..=|..|..+.+.++++...=.++.+....-...=.+...++-+...+|.-|+||+....
T Consensus 34 ~~Mv~~lT~gkk~~~~~~~~~~~~~~~~~~~~~~ll~l~d~D~~af~~~~~a~klPk~T~eek~~R~ 100 (184)
T PF04961_consen 34 GSMVANLTLGKKKYEDVEEELKEIIEKLEELREELLDLADEDAEAFNAVMAAYKLPKETDEEKAARS 100 (184)
T ss_dssp HHHHHHCTTTSTTSGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCTS---SGGGTTTHH
T ss_pred HHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHhhHH
Confidence 3445566655666777777777777776667777766677778888889999999999999976654
No 140
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=2.9e+02 Score=27.50 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=27.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCChhhH
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD--IPVANESED 111 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td--leplteeE~ 111 (156)
+.++|.++-.-|-+|++++.-.|..++.++ |+|....| +||+|..|.
T Consensus 610 er~~i~e~a~~La~R~eea~e~qe~L~~~~-----------~~L~~~~~~~lp~l~~AEr 658 (741)
T KOG4460|consen 610 ERKSLREMAERLADRYEEAKEKQEDLMNRM-----------KKLLHSFHSELPVLSDAER 658 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHhcccccCCcchhHHH
Confidence 444555555566666666665555555444 34455555 668888776
No 141
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.21 E-value=2.6e+02 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=11.2
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 031612 18 NLLTKSNHELTMVQYKLEKE 37 (156)
Q Consensus 18 ~~FqKAesDLdyIq~RLE~E 37 (156)
.-..+.+.-|...++.|+..
T Consensus 81 ~e~~~~~~~l~~l~~el~~l 100 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQL 100 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHH
Confidence 34555555566666555553
No 142
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=29.44 E-value=1.7e+02 Score=19.30 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhh
Q 031612 57 KVQEDLPILKEQCRELLAAKQDLIDKASAIL-----VRNRNLVQRMQVS 100 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L-----~~t~~liQ~LQ~~ 100 (156)
+.+.-+..+..+.++-+..|+.|++.+.... .....-+.+||..
T Consensus 17 ~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~~~k~l~~~ 65 (77)
T PF03993_consen 17 RRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAAEEIKELQQE 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4455666777777778888888888886543 2345555566543
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.43 E-value=3.3e+02 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=13.6
Q ss_pred cchhhhHHHHHHHHHhhhhhHHHHHHH
Q 031612 7 QHNHQAIDGLVNLLTKSNHELTMVQYK 33 (156)
Q Consensus 7 ~~~~~aVd~Le~~FqKAesDLdyIq~R 33 (156)
|....-+.+|+.-+.++...|+-+...
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555555555555554433
No 144
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.35 E-value=3.3e+02 Score=22.51 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
+|..+..++..|+.+++.+...=+.++|.-++-..+++..+.-|..-...-+=.+.=..++..|...+.||..
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~ 75 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVN 75 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888887777777777766666666666555554332111000112456678888887643
No 145
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.32 E-value=3.4e+02 Score=22.66 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td 102 (156)
+|..+..++..|..++++|...=+.++|+-+.-..+++.-++-|+.-.+
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778888888888888888888889888888888888888888776
No 146
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.17 E-value=1.8e+02 Score=19.33 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRE---LLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDE 123 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~---l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~e 123 (156)
|..+|++++ .....+...+.. |..+..+.+....+.-.+++.+|.-|+... ..+|..|.+++.+
T Consensus 4 ~r~~lv~~l----~~~~~il~~L~~~~vlt~~e~~~i~~~~~~~~k~~~Lld~l~~kg---------~~af~~F~~~L~~ 70 (80)
T cd01671 4 NRLELVKDL----LDVEDVLDHLLSDGVLTEEEYEKIRSESTRQDKARKLLDILPRKG---------PKAFQSFLQALQE 70 (80)
T ss_pred hHHHHHHHH----ccHHHHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcC---------hHHHHHHHHHHHh
Confidence 455666666 344444444432 333344445555555666777777777643 5688899999876
Q ss_pred HH
Q 031612 124 WT 125 (156)
Q Consensus 124 wt 125 (156)
.-
T Consensus 71 ~~ 72 (80)
T cd01671 71 TD 72 (80)
T ss_pred cC
Confidence 43
No 147
>PHA03041 virion core protein; Provisional
Probab=29.12 E-value=2.1e+02 Score=23.50 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQC----RELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~----~~l~aeKqel~d~ir~~L~~ 89 (156)
--+.+++.-||.+..+|+.+- .+|+.+|--++|+|-+....
T Consensus 96 ~ei~kE~esIKdeT~sLQ~es~~LV~DIs~AkdtTfdAiNaiM~d 140 (153)
T PHA03041 96 EEIIKELESIKDETSSLQNESDSLVDDISTAKDTTFDAINAIMKD 140 (153)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 356777778888888887664 44666777666666665544
No 148
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.96 E-value=3.4e+02 Score=22.65 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=36.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 20 LTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAI 86 (156)
Q Consensus 20 FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~ 86 (156)
..++..+++.+..|++.+ ....+.+++++..|+..+.....++-++-..|.+.
T Consensus 77 ~~~l~~e~~~~r~k~e~e--------------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L 129 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEE--------------LAERKDLEEELESLRKDLDEETLARVDLENQIQSL 129 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHH
Confidence 444555666666666666 66677788888888888887777777666555443
No 149
>PRK14147 heat shock protein GrpE; Provisional
Probab=28.90 E-value=3.1e+02 Score=22.17 Aligned_cols=89 Identities=9% Similarity=0.013 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
...++.|...|..+.+|++-+.+|.+.|.....--. +.++-.++=-+.+-++--+....+..+.+...+.-
T Consensus 31 ~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a---------~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~m 101 (172)
T PRK14147 31 RSEIALVKADALRERADLENQRKRIARDVEQARKFA---------NEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLEL 101 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHH
Confidence 345677778888899999999999988887643311 11111111112222222222111223456666666
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 031612 90 NRNLVQRMQVSLDIPVAN 107 (156)
Q Consensus 90 t~~liQ~LQ~~tdleplt 107 (156)
++..+...-+..|++++.
T Consensus 102 i~k~l~~~L~~~Gv~~i~ 119 (172)
T PRK14147 102 TYKQLLKVAADNGLTLLD 119 (172)
T ss_pred HHHHHHHHHHHCCCEEeC
Confidence 777777777888988553
No 150
>PRK01294 lipase chaperone; Provisional
Probab=28.83 E-value=2.9e+02 Score=24.64 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=32.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhhHHHHHH
Q 031612 22 KSNHELTMVQYKLEKEFQQIYPDNA--NPMKLVSRIKKVQEDLPILKE 67 (156)
Q Consensus 22 KAesDLdyIq~RLE~Ef~~~~pd~a--NPv~Ll~rL~~Iksr~~aL~~ 67 (156)
-.|.|++-|..+++..+...+|..+ --+.|+.|.+.-+..+..+..
T Consensus 99 ~gE~~l~~i~~~v~~~i~~~l~~~a~~~a~~l~~rY~~Y~~aL~~l~~ 146 (336)
T PRK01294 99 LGELDLAAIDALVEREIAAQLPEPADSQALDLWLRYKAYLSALAQLED 146 (336)
T ss_pred cCCCCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677999999999999999999655 344556665555555554443
No 151
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=28.80 E-value=60 Score=29.16 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCC-------ChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 22 KSNHELTMVQYKLEKEFQQIYPDNA-------NPMKLVSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 22 KAesDLdyIq~RLE~Ef~~~~pd~a-------NPv~Ll~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
.++++=.++-+||++|+++.-.=.. +--.|++.++.=+.+++.|.-.++.|..+
T Consensus 134 sssn~H~q~larL~~ElkQRk~L~~~~~eLl~~K~~Ll~di~~k~~~l~sl~p~L~tl~ka 194 (303)
T KOG2216|consen 134 SSSNPHKQMLARLDFELKQRKELSKLYQELLSRKAALLSDIKAKKNRLQSLDPKLQTLLKA 194 (303)
T ss_pred hcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHh
No 152
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.77 E-value=3.7e+02 Score=23.62 Aligned_cols=51 Identities=29% Similarity=0.322 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA---SAILVRNRNLVQRMQVS 100 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i---r~~L~~t~~liQ~LQ~~ 100 (156)
.|-.-++.+..+++.+..+|..+......|-.+| ++-|..+.+.++.||.-
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456678889999999999999999999887777 88899999999999853
No 153
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.76 E-value=4.1e+02 Score=23.39 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=50.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHh----CCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 19 LLTKSNHELTMVQYKLEKEFQQI----YPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLV 94 (156)
Q Consensus 19 ~FqKAesDLdyIq~RLE~Ef~~~----~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~li 94 (156)
.+-.+--||+.|-+-|=.-...+ .-.+.--|.+|+-|-.-..+.+.|.....+- ..-.++|+.+++.+.+-=+.|
T Consensus 12 rLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq-~k~e~~m~~Lea~VEkrD~~I 90 (272)
T KOG4552|consen 12 RLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQ-QKREQLMRTLEAHVEKRDEVI 90 (272)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhH-HHHHHHHHHHHHHHHHhHHHH
Confidence 33445568888877664443211 1122234456665555566666655443332 223468999999999989999
Q ss_pred HHHHhhcC
Q 031612 95 QRMQVSLD 102 (156)
Q Consensus 95 Q~LQ~~td 102 (156)
|+||+..-
T Consensus 91 QqLqk~LK 98 (272)
T KOG4552|consen 91 QQLQKNLK 98 (272)
T ss_pred HHHHHHHH
Confidence 99998743
No 154
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=28.67 E-value=1.5e+02 Score=18.21 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
.|..|..-+..|+..+. ....+|.+++|.|-..+..+..-++.-.
T Consensus 7 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~ 54 (60)
T cd00193 7 ELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRAN 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444 4566688999999998887776665433
No 155
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.13 E-value=2.6e+02 Score=26.58 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELL-AAKQDLIDKA---SAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~-aeKqel~d~i---r~~L~~t~~liQ~LQ~~t 101 (156)
.|.++-++++.|-..+..|++.-+ ++++++.... ...+..+..+|++|+.+.
T Consensus 84 ~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 84 ALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666644 3344444322 234455677778887654
No 156
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=28.07 E-value=3.6e+02 Score=22.54 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=47.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhh---HHHHHhHHHHHHHHHH
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESE---DASFANFKQVIDEWTV 126 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE---~~a~~~f~~~I~ewt~ 126 (156)
+.+|.+++..+...|+.+...=+.++++-.+...+.+...+-|..-.+ ..+++.+ -.+|..|.+++.|-.+
T Consensus 4 v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~-~~~~~~~~~i~~~l~kF~~~l~El~~ 77 (215)
T cd07604 4 VGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGS-KALSREEEDLGAAFLKFSVFTKELAA 77 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666667778888888888888888877554 3344433 3667778777776543
No 157
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=28.01 E-value=2.8e+02 Score=21.29 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=2.0
Q ss_pred HHhhcCCCCCChhhHHHHHhHHHHH
Q 031612 97 MQVSLDIPVANESEDASFANFKQVI 121 (156)
Q Consensus 97 LQ~~tdleplteeE~~a~~~f~~~I 121 (156)
..+..|.+ ++.+|..-..-|..+-
T Consensus 97 ilr~~g~~-l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 97 ILRNRGYA-LSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHH---------------------
T ss_pred HHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 44555555 6666665555555443
No 158
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=3e+02 Score=27.46 Aligned_cols=44 Identities=27% Similarity=0.483 Sum_probs=28.6
Q ss_pred hhhHHHHHhHHHH----HHHHHHhhc----cccccccccCChhhHHHHHHHHHhh
Q 031612 108 ESEDASFANFKQV----IDEWTVQVR----SRTRDEDHDSNSEDINKLLFSAIVQ 154 (156)
Q Consensus 108 eeE~~a~~~f~~~----I~ewt~~~~----~~~~~~~~~~~~~d~n~~lfsa~v~ 154 (156)
.|+-+.|+|++.. -+|+..||- --.+.|. +.--+|++|-=||-|
T Consensus 668 kedaatfsslramf~~R~ee~~tq~de~~~ql~aaed---ekKtln~llrmaiqq 719 (772)
T KOG0999|consen 668 KEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAED---EKKTLNQLLRMAIQQ 719 (772)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Confidence 5777888877655 356666662 1112233 555699999999876
No 159
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.70 E-value=4.9e+02 Score=24.04 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=41.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAK----QDLIDKASAILVRNRNLVQRMQVSLDIPVA 106 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeK----qel~d~ir~~L~~t~~liQ~LQ~~tdlepl 106 (156)
..++..+|.++..+.+++.+.+.++ .|.|+.+.+-+.+ |+ -|.+|+.+.++.+
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisk-lE-~~~~Qq~~q~e~~ 331 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISK-LE-QQQQQQVVQLEGT 331 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HH-HHHhhhhhhhccc
Confidence 4578888999988888888777765 5788888888888 66 6677777777744
No 160
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=27.58 E-value=3.5e+02 Score=22.25 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHH
Q 031612 91 RNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDE 123 (156)
Q Consensus 91 ~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~e 123 (156)
-..+..|++ -|+. .++++|.+++. .+..++.|
T Consensus 247 ~~~~~~~~~-~G~~v~~~s~~~~~~~~~~~~~~~~e 281 (286)
T PF03480_consen 247 EEALKELEE-NGVTVVELSDEELAAWREAAAPVWEE 281 (286)
T ss_dssp HHHHHHHHH-TT-EEEEGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCEEeCCCHHHHHHHHHHHHHHHHH
Confidence 345555666 8888 68888888887 66777777
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.47 E-value=4.1e+02 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=7.1
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 031612 54 RIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l 72 (156)
+|+..+.++.+++....++
T Consensus 217 eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 162
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.41 E-value=2.7e+02 Score=21.90 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=43.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 031612 53 SRIKKVQEDLPILKEQCRELLAA---K-------QDLIDKASAILVRNRNLVQRMQVSLDIPVA 106 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~ae---K-------qel~d~ir~~L~~t~~liQ~LQ~~tdlepl 106 (156)
+.+..+++++.+||.-+=+|-.+ | -+.+|+.+.-|.+||+-+-.|-++.|.-.+
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~ 99 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL 99 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH
Confidence 45889999999999999887655 2 245677788899999999999999777644
No 163
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.14 E-value=2.4e+02 Score=20.72 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 48 PMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 48 Pv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
|-.|...+..++.++..|..+...|.....+.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEY 32 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888877777665
No 164
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=26.87 E-value=2.6e+02 Score=20.60 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 27 LTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRN 92 (156)
Q Consensus 27 LdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~ 92 (156)
|+-|+..|+.+ .+.+-|.|+..|++||.+|=---.....=-.+.++++..+.+-|.+..+
T Consensus 19 L~ei~~~L~k~------kHtq~v~LikkL~~Ik~~YL~~l~~~~~k~~~~~~l~~k~k~eldaAfe 78 (82)
T PF05062_consen 19 LSEIKKQLDKR------KHTQNVALIKKLSAIKTEYLYELDVSKEKESEKAELPSKIKSELDAAFE 78 (82)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 44454555443 2347799999999999988543333322225668888888888776543
No 165
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.57 E-value=72 Score=26.66 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHhhcCCCCCChhhHHHHHhHHHH
Q 031612 96 RMQVSLDIPVANESEDASFANFKQV 120 (156)
Q Consensus 96 ~LQ~~tdleplteeE~~a~~~f~~~ 120 (156)
+=|.++||.-||++|.+.|..+|..
T Consensus 91 ~EQasAGLd~Ls~~E~a~f~~LN~a 115 (176)
T COG3195 91 SEQASAGLDRLSPEEFARFTELNAA 115 (176)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHH
Confidence 3588999999999999999888865
No 166
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=26.45 E-value=44 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHH
Q 031612 32 YKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCR 70 (156)
Q Consensus 32 ~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~ 70 (156)
.||.++|--+.|+=+=-+.||.++..++.++..|+.++.
T Consensus 57 ~rL~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~~l~ 95 (101)
T PRK10265 57 VRLRHELALDWPGIAVALTLLDEIAHLKQENRLLRQRLS 95 (101)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887777766667789999999998888877654
No 167
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=26.43 E-value=85 Score=22.07 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcCCC-CCChhhHHHHHhHHHHHH
Q 031612 90 NRNLVQRMQVSLDIP-VANESEDASFANFKQVID 122 (156)
Q Consensus 90 t~~liQ~LQ~~tdle-plteeE~~a~~~f~~~I~ 122 (156)
.++++-.|+...|+. |..+-....|++.+.+++
T Consensus 39 ~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~ 72 (78)
T PRK05087 39 TVELLVELENRFDIEVPVSEFDRDDWNTPNKIIA 72 (78)
T ss_pred HHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHH
Confidence 589999999999999 666666666766665543
No 168
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.35 E-value=4.8e+02 Score=23.41 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPD--NANPMKLVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd--~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
..+.+-|+.-..+++.+|+-.+.+|. +|++.+.. ..+.-.+.++|+.+++++..+..+...+-+
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~-~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a 225 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLK-AFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIA 225 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777788888888888886 77776642 123345778888887777777766554433
No 169
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.19 E-value=2.3e+02 Score=19.71 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 031612 57 KVQEDLPILKEQCRELLA 74 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~a 74 (156)
.+..-+..|..+..++..
T Consensus 30 ~~~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333333334444444333
No 170
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=25.97 E-value=4.2e+02 Score=22.68 Aligned_cols=98 Identities=14% Similarity=0.290 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcC
Q 031612 28 TMVQYKLEKEFQQIYPDN--ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLID---KASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 28 dyIq~RLE~Ef~~~~pd~--aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d---~ir~~L~~t~~liQ~LQ~~td 102 (156)
-||..+|-.=+.. +|+. .||+.+|..|...-.+++.+...- +.+..+ .++.-.. -...++.|++..
T Consensus 40 R~~~~~ls~a~~~-~~~~~~i~p~~vl~~L~~~l~~~~~i~~e~------~~~y~~~l~~v~~~Y~--~~v~~EV~~A~~ 110 (254)
T PF06798_consen 40 RFVIKILSNALSS-DSEEDCINPLDVLNELEEGLKDHPSISEEE------RERYLEFLKSVRKEYD--ERVEKEVQEAFY 110 (254)
T ss_pred hHHHHHHHHHHHh-CcccceecHHHHHHHHHHHhhcccccCHHH------HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3555566544444 6655 499999998887766655554432 222222 3333332 235566777766
Q ss_pred CCCCChhhHHHHHhHHHHHHHHHHhhc---cccccc
Q 031612 103 IPVANESEDASFANFKQVIDEWTVQVR---SRTRDE 135 (156)
Q Consensus 103 leplteeE~~a~~~f~~~I~ewt~~~~---~~~~~~ 135 (156)
.- -.+.-+.-|.++-..|.-|...-. |.||.+
T Consensus 111 ~~-~ee~~~~l~~nYl~~v~a~~~~~~~~d~~TGe~ 145 (254)
T PF06798_consen 111 YS-YEEQIQNLFENYLDHVEAWINDEKVKDPFTGEE 145 (254)
T ss_pred Hc-cHHHHHHHHHHHHHHHHHHhcCCeeeCCCCccc
Confidence 22 223346677888888888886543 788833
No 171
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.77 E-value=5.5e+02 Score=26.68 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCC-------ChHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 27 LTMVQYKLEKEFQQIYPDNA-------NPMKLVSRIKKVQEDLPIL-KEQCRELLAAKQDLIDKASAILVRNRNLVQRMQ 98 (156)
Q Consensus 27 LdyIq~RLE~Ef~~~~pd~a-------NPv~Ll~rL~~Iksr~~aL-~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ 98 (156)
+..+++=+-||+.+.-|++. -|...+=+.-+||+++.-| |+.|+-++..+- +.+|--...=-.+++|.++
T Consensus 321 ielL~~f~~~E~~~~ep~s~~W~G~lp~pA~tIL~qha~QsdLsdlhlAm~rw~a~~~~--~~s~~ld~s~L~~lL~di~ 398 (1103)
T KOG1328|consen 321 IELLRQFALYEIRQTEPPSRFWDGVLPEPAMTILRQHAIQSDLSDLHLAMCRWLAFHSM--IHSIDLDFSLLYKLLQDII 398 (1103)
T ss_pred HHHHHHHHHHHhhccCCCCccccCCCCchHHHHHHHHHhccCCcHHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHH
Confidence 45566778899999999763 8998888999999999888 678888877652 1112112223477899999
Q ss_pred hhcCCCC-CChhhHHHHH-hHHHHHHHHH
Q 031612 99 VSLDIPV-ANESEDASFA-NFKQVIDEWT 125 (156)
Q Consensus 99 ~~tdlep-lteeE~~a~~-~f~~~I~ewt 125 (156)
++-.-+| |+.|+....+ +|+. .+|..
T Consensus 399 ~~W~~~~qL~~e~E~~LaDs~s~-F~e~~ 426 (1103)
T KOG1328|consen 399 DKWQPLTQLDKEEEDMLADSFSS-FDEYC 426 (1103)
T ss_pred HhhcCcccCCHHHHHHHHHHHHH-HHHHH
Confidence 9988664 7755554444 5544 33443
No 172
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.73 E-value=3.3e+02 Score=21.32 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCh---hhHHHHHhHHHHHHHHHHhhccc
Q 031612 78 DLIDKASAILVRNRNLVQRMQVSLDI---PVANE---SEDASFANFKQVIDEWTVQVRSR 131 (156)
Q Consensus 78 el~d~ir~~L~~t~~liQ~LQ~~tdl---eplte---eE~~a~~~f~~~I~ewt~~~~~~ 131 (156)
+-+..+...-.+.+....+|+.+.|+ |++.. .-.+....+.+.|..|...+.-.
T Consensus 112 ~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556677888899999996 44431 22334457999999999887543
No 173
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=25.39 E-value=5.5e+02 Score=23.78 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCCCccc-hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 1 MGDHNFQH-NHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 1 ~~~~~~~~-~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
||-.+||- |..+.++|..==+++..|++.-++=. .++. ++++++++..+==.+=+.++.+.++-=+..
T Consensus 189 ~g~~~F~g~~~~a~~~l~~E~~~~~~di~~~~~A~-~~l~----------~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~ 257 (379)
T PF04518_consen 189 MGTDNFPGSYFMALAKLEKEREQIRRDIKSCERAK-AVLN----------KQLARVKADAKLTSEQKSELLDSLNNYKDN 257 (379)
T ss_pred cchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----------HHHHHHhcccccCHHHHHHHHHHHHHHHHH
Confidence 57777776 77777777766666666666543321 1111 223333332222223334444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHH--HHHHHHhh
Q 031612 80 IDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQV--IDEWTVQV 128 (156)
Q Consensus 80 ~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~--I~ewt~~~ 128 (156)
.+.|-.+|..-+.++.-|.= .|++ --++.+.+|. .- -+-|-.+|
T Consensus 258 l~~i~~qL~~L~~~L~~L~~-~~~~-~~~~~~~~F~---i~g~~~~Wi~~L 303 (379)
T PF04518_consen 258 LNAISNQLSLLQSLLAPLSI-QGVS-DPDEVDGAFK---ITGGSDDWIPTL 303 (379)
T ss_pred HHHHHHHHHHHHHHhcccee-ecCC-CCCCcCCceE---EEecchhHHHHH
Confidence 55555555554444444433 1122 2234444553 22 35677776
No 174
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=25.22 E-value=3.2e+02 Score=21.05 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKS--NHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL 87 (156)
Q Consensus 10 ~~aVd~Le~~FqKA--esDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L 87 (156)
.+.|+.+...|.++ +.+=..+++|++. ....|. ..||++...|+..| +.|.+++.+.-..+
T Consensus 3 rt~vEq~~~~FlD~aRq~e~~FlqKr~~L--S~~kpe-----------~~lkEEi~eLK~El----qRKe~Ll~Kh~~kI 65 (106)
T PF11594_consen 3 RTYVEQLIQSFLDVARQMEAFFLQKRFEL--SAYKPE-----------QVLKEEINELKEEL----QRKEQLLQKHYEKI 65 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCHH-----------HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 35567777777443 2333567888876 555554 23455555555444 55777777777777
Q ss_pred HHHHHHHHHHHhhcCCC
Q 031612 88 VRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdle 104 (156)
.---++++.++.....+
T Consensus 66 ~~w~~lL~d~~~~~k~~ 82 (106)
T PF11594_consen 66 DYWEKLLSDAQNQHKVP 82 (106)
T ss_pred HHHHHHHHHHHhhccCc
Confidence 77777788888877766
No 175
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=25.16 E-value=4.1e+02 Score=24.01 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
+++|...-..+...+...++++.++...+..++..+.+.+..+.....
T Consensus 257 ~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (412)
T PF04108_consen 257 VKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE 304 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666677777888888888888888888888888777
No 176
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.04 E-value=4.1e+02 Score=23.99 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRE 71 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~ 71 (156)
|.++++.++.++..+..++.+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~ 352 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 177
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.03 E-value=4.9e+02 Score=23.10 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
.||.||+.|+.=|.... +|-..+..=......|...|..+-++|..++..
T Consensus 316 ~lv~RL~tL~~lH~~a~-~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 316 SLVERLKTLKSLHEEAA-EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332222 333444444556677788888888888888877
No 178
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=24.94 E-value=2e+02 Score=18.64 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=33.9
Q ss_pred cchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 031612 7 QHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLID 81 (156)
Q Consensus 7 ~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a---NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d 81 (156)
..|...++.+..+...++.-| ...+... ..-.+++.++.++.++.....++..|...-+.+++
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l------------~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKL------------SSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------CSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------hCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655554333 1222122 44455666666666766666666666655554433
No 179
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=24.87 E-value=4.7e+02 Score=23.16 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHH---
Q 031612 47 NPMKLVSRIKKVQE---------DLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASF--- 114 (156)
Q Consensus 47 NPv~Ll~rL~~Iks---------r~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~--- 114 (156)
|+=.|++-++.|-+ =+++||.+|..+...=|..++.+-.......++-|.|=..+. +-+.+..+..-
T Consensus 69 n~dqlVq~lr~Ia~nA~gyAF~LAL~t~~p~~~~~~~~lq~~~~~lN~~~~nsCq~aq~lv~~~~-~~~~~~~~~~~~~~ 147 (361)
T PF06122_consen 69 NSDQLVQMLRNIASNAPGYAFQLALQTLCPQCGNIMDKLQKIAQALNQMNINSCQAAQGLVNGLA-PALQESQQSICSTI 147 (361)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhc-cchhHHHHHHHHHH
Confidence 88888888888744 578999999999999999999999999999999999988888 32333333332
Q ss_pred HhHHHHHHHHHHh
Q 031612 115 ANFKQVIDEWTVQ 127 (156)
Q Consensus 115 ~~f~~~I~ewt~~ 127 (156)
...+-+.+.|.+-
T Consensus 148 ~~~~g~~sD~~~a 160 (361)
T PF06122_consen 148 GTASGLFSDWFEA 160 (361)
T ss_pred HHhcCccccHHHH
Confidence 2445556677766
No 180
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=24.85 E-value=2.9e+02 Score=27.05 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=45.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHh-------hHHHHHH--------HHHHHHHHHHHHHH
Q 031612 18 NLLTKSNHELTMVQYKLEKEFQQIYPDNA-NPMKLVSRIKKVQE-------DLPILKE--------QCRELLAAKQDLID 81 (156)
Q Consensus 18 ~~FqKAesDLdyIq~RLE~Ef~~~~pd~a-NPv~Ll~rL~~Iks-------r~~aL~~--------q~~~l~aeKqel~d 81 (156)
....|.-..+..||-+||-++.++.|+=- +-.-||+-|.==+. .|+-.-. +=.+|+.+..|+++
T Consensus 301 ~~i~kmhkAiaiiQFKlE~~~ikRrpef~me~R~~L~~Idy~~~tI~l~g~~Y~L~dt~fpTinp~~P~~L~~EE~evi~ 380 (648)
T COG3855 301 ALIAKMHKAIAIIQFKLEGEIIKRRPEFEMEHRLLLEKIDYEKGTITLNGKTYPLNDTCFPTINPEQPYELLEEEEEVID 380 (648)
T ss_pred HHHHHHHHHHHHhhhhhccHhhhcCCcccchHHHHHHhcccccCeEEECCeEeecccccCCcCCCCChHHhhHHHHHHHH
Confidence 34445555577899999999999998622 33333332211111 1111111 11235567888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031612 82 KASAILVRNRNLVQRMQ 98 (156)
Q Consensus 82 ~ir~~L~~t~~liQ~LQ 98 (156)
++.++...-..+=.++|
T Consensus 381 kl~~sf~~sekL~rHv~ 397 (648)
T COG3855 381 KLLASFQNSEKLQRHVQ 397 (648)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 99888877666544433
No 181
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=2.8e+02 Score=22.14 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDK 82 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ 82 (156)
+|-.|...|..+++.+++|..++..|-..+-++..+
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~ 42 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTA 42 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999998888887776654433
No 182
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=3e+02 Score=23.24 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=38.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
|++.+++|+.-+..--.+++.+..+.++|=. +.++.+++|.|.+.
T Consensus 39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd-~entLeiv~~l~~~ 83 (187)
T KOG3313|consen 39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPD-IENTLEIVQTLIAK 83 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHhC
Confidence 7888899998888888899999999888864 56779999999988
No 183
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=24.31 E-value=4.6e+02 Score=22.52 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 16 LVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 16 Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
+-..|+.|+..+-.++.+|..-|.++-| |=.++..|...+.+++.-|+.+...+..
T Consensus 147 ~~~~~~~ae~~v~~Lek~lkr~I~KSrP------------------Yfe~K~~~~~~l~~~k~~v~~Le~~v~~ 202 (239)
T PF05276_consen 147 RARIYNEAEQRVQQLEKKLKRAIKKSRP------------------YFELKAKFNQQLEEQKEKVEELEAKVKQ 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888888888888888877 4456777777777777777776666644
No 184
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=24.01 E-value=3.9e+02 Score=21.58 Aligned_cols=22 Identities=5% Similarity=0.205 Sum_probs=19.5
Q ss_pred CCChhhHHHHH-hHHHHHHHHHH
Q 031612 105 VANESEDASFA-NFKQVIDEWTV 126 (156)
Q Consensus 105 plteeE~~a~~-~f~~~I~ewt~ 126 (156)
.||.|+++.|+ +|.+.+++|..
T Consensus 129 lLTPEQra~l~~~~e~r~~~~~~ 151 (162)
T PRK12751 129 LLTPEQKEALNKKHQERIEKLQQ 151 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Confidence 69999999998 79999999954
No 185
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=24.01 E-value=2e+02 Score=19.28 Aligned_cols=36 Identities=3% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHh
Q 031612 86 ILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQ 127 (156)
Q Consensus 86 ~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~ 127 (156)
+...-+..-+.+++..|++|++ +..|..+++++...
T Consensus 24 ~~~~vy~~Y~~~c~~~~~~~l~------~~~~~~~l~~L~~~ 59 (87)
T cd08768 24 TTGEVYEVYEELCEEIGVDPLT------QRRISDLLSELEML 59 (87)
T ss_pred cHHHHHHHHHHHHHHcCCCCCc------HHHHHHHHHHHHHc
Confidence 5666788888899999999996 46788888888764
No 186
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=23.66 E-value=3.2e+02 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKEQCR-ELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~-~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~ 128 (156)
.|-+-|+=+|=.++-|+..+. +...+-.++|+-||..|+..+.-+.+|--..-+. ++|.+ --.++.+.+++.+.|-
T Consensus 383 SiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRlt-L~e~~--L~~AL~~~~~~f~~qt 459 (574)
T COG3850 383 SIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLT-LQEAE--LPPALEQMLAEFSNQT 459 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCc--hHHHHHHHHHHHHhcc
Confidence 355667777777888888888 6666777888999999998888888888777766 44332 2235677777777665
Q ss_pred c
Q 031612 129 R 129 (156)
Q Consensus 129 ~ 129 (156)
+
T Consensus 460 g 460 (574)
T COG3850 460 G 460 (574)
T ss_pred C
Confidence 3
No 187
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=23.47 E-value=2.8e+02 Score=19.73 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIY-PDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~-pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
.+-+.|..+|...+.--..-...|..+|...- -++.++..-+.+++.|-.++.++...+. -.+.+..|-.+|..
T Consensus 5 e~W~~L~~~y~~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~-----d~~~v~~iL~~Lp~ 79 (119)
T PF14223_consen 5 EAWDALKKRYEGQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPIS-----DEDLVSKILRSLPP 79 (119)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCccc-----chhHHHHHHhcCCc
Confidence 45677888888877655577778888887777 4556777778888888888877655322 34455555555544
Q ss_pred HHHH-HHHHHhhcCCCCCC
Q 031612 90 NRNL-VQRMQVSLDIPVAN 107 (156)
Q Consensus 90 t~~l-iQ~LQ~~tdleplt 107 (156)
-+.. +.-+....+++.+|
T Consensus 80 ~y~~~~~~i~~~~~~~~~t 98 (119)
T PF14223_consen 80 SYDTFVTAIRNSKDLPKMT 98 (119)
T ss_pred hhHHHHHHHHhcCCCCcCC
Confidence 3332 33344444555443
No 188
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=23.46 E-value=2.6e+02 Score=19.43 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCCCChhh------HHHHHhHHHHHHHHHHhhccccccccccCChhhHHHHH
Q 031612 93 LVQRMQVSLDIPVANESE------DASFANFKQVIDEWTVQVRSRTRDEDHDSNSEDINKLL 148 (156)
Q Consensus 93 liQ~LQ~~tdleplteeE------~~a~~~f~~~I~ewt~~~~~~~~~~~~~~~~~d~n~~l 148 (156)
-|+-.-.+.|+++|+++- +..| .+.++|.+=..-.++--+.-- -.+|+|.+|
T Consensus 8 svk~iAes~Gi~~l~de~a~~La~dvey-rlreiiq~a~kfm~hskR~~L---t~~Di~~AL 65 (66)
T PF02969_consen 8 SVKDIAESLGISNLSDEAAKALAEDVEY-RLREIIQEALKFMRHSKRTKL---TTDDINSAL 65 (66)
T ss_dssp HHHHHHHHTT---B-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-SSB----HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCC---CHHHHHHHh
Confidence 455567789999888653 3334 788888876655543222122 568899886
No 189
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=23.42 E-value=3.2e+02 Score=21.89 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCC
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYP 43 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~p 43 (156)
.....|...+++|.-| -..-|||++|.+..|
T Consensus 59 ~~l~~Li~~~k~~~~E--~f~lkLEk~I~q~~P 89 (137)
T PF10788_consen 59 KSLQNLIESLKNAQKE--NFELKLEKDILQQMP 89 (137)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 3566788888888775 567899999999999
No 190
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.09 E-value=4.6e+02 Score=22.05 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=45.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 21 TKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNR 91 (156)
Q Consensus 21 qKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~ 91 (156)
.+|+..++-|....+-|. +.|=..|++-+-++++|...++.-..+-.||. +||--|..-|
T Consensus 146 ~~ANeei~~v~~~~~~e~----------~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt-kICDeLI~k~ 205 (207)
T PF05010_consen 146 EKANEEIAQVRSKHQAEL----------LALQASLKKEEMKVQSLEESLEQKTKENEELT-KICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 366666666666555554 57788899999999999999999988888875 6777776544
No 191
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.00 E-value=4.8e+02 Score=22.25 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCCCChhhHHHHHhH
Q 031612 53 SRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQ---VSLDIPVANESEDASFANF 117 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ---~~tdleplteeE~~a~~~f 117 (156)
+||+.=..++.-+...+++|.-.=+.+|++.+.-..+++..++-|+ ...=..+.|++|...-.+|
T Consensus 2 ~~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL 69 (207)
T cd07633 2 ERLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESF 69 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHH
Confidence 3566666677777777777777778888888877777777766555 3333447888777655443
No 192
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.99 E-value=7.5e+02 Score=25.44 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCC--ChH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 031612 22 KSNHELTMVQYKLEKEFQQIYPDNA--NPM--KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR-----NRN 92 (156)
Q Consensus 22 KAesDLdyIq~RLE~Ef~~~~pd~a--NPv--~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~-----t~~ 92 (156)
++.+.|.--+..++.|....-..++ -|. .-.+||+.+...++++|..-..+..+++-+.+...+.|.+ -=+
T Consensus 374 ~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE 453 (961)
T KOG4673|consen 374 IAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDE 453 (961)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4445555555555555555544443 444 4589999999999999988777777777666666666655 334
Q ss_pred HHHHHH
Q 031612 93 LVQRMQ 98 (156)
Q Consensus 93 liQ~LQ 98 (156)
||..|+
T Consensus 454 ~I~~lm 459 (961)
T KOG4673|consen 454 IINQLM 459 (961)
T ss_pred HHHHHH
Confidence 555544
No 193
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=22.93 E-value=6.7e+02 Score=23.99 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 25 HELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 25 sDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
+||+--.-+.-.+|-+.|. .+.++|++|.+.+..|...|.++...
T Consensus 23 ~~iE~~~l~~~~~~L~~f~------~v~~~l~~~~~~v~~l~~~~~~~~~~ 67 (618)
T PF06419_consen 23 SDIEKRLLKINQEFLKEFS------PVNRQLKRLQSDVDKLNSSCDQMQDR 67 (618)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555443 46788888888888888888776644
No 194
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=3.9e+02 Score=27.17 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHH
Q 031612 48 PMKLVSRIKKVQEDLPILKEQCRE-----LLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVID 122 (156)
Q Consensus 48 Pv~Ll~rL~~Iksr~~aL~~q~~~-----l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ 122 (156)
-.++.+.|+|+|+++..-|.-+-- -+++|-.=|++.+-+...-|..++-+-..+++.. ..| .|.--+.
T Consensus 396 ~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~gfl~~tsl~~------~~f-~F~~f~t 468 (929)
T COG5113 396 CEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNGFLFMTSLFA------DEF-PFTDFMT 468 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh------hcc-chHHHHH
Confidence 468889999999988776654322 3446666666666666666666676777776551 123 5666789
Q ss_pred HHHHhhc
Q 031612 123 EWTVQVR 129 (156)
Q Consensus 123 ewt~~~~ 129 (156)
+|+++|-
T Consensus 469 ~~l~rv~ 475 (929)
T COG5113 469 EYLARVE 475 (929)
T ss_pred HHHHHhc
Confidence 9999993
No 195
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.40 E-value=3.4e+02 Score=20.31 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=57.9
Q ss_pred CccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhhHHHHHHH---HH-HHHHHHHH
Q 031612 5 NFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPD--NANPMKLVSRIKKVQEDLPILKEQ---CR-ELLAAKQD 78 (156)
Q Consensus 5 ~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd--~aNPv~Ll~rL~~Iksr~~aL~~q---~~-~l~aeKqe 78 (156)
++|.+..+..+|...|.+....|+-.+..|+.+....--. ..++-..-++-+.++.+...|... .+ ++-.++++
T Consensus 30 ~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999998877655544 234444444444444433333332 22 34445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 79 LIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 79 l~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
++..|...+.+ .|...-+.-|+.
T Consensus 110 ~~~~i~~~i~~---~v~~~a~~~g~~ 132 (158)
T PF03938_consen 110 LLQPIQKKINK---AVEEYAKENGYD 132 (158)
T ss_dssp HHHHHHHHHHH---HHHHHHHHTT-S
T ss_pred HHHHHHHHHHH---HHHHHHHHcCCe
Confidence 66666665533 455555555554
No 196
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=22.34 E-value=4.7e+02 Score=22.16 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILV 88 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~ 88 (156)
+=+.||+..++-.-+-+..++++++|+....+|+-...+-|-
T Consensus 42 ~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP 83 (231)
T KOG4204|consen 42 EFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLP 83 (231)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 446778888888888888888888888888888887766554
No 197
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.14 E-value=3.8e+02 Score=20.78 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhccc
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSR 131 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~ 131 (156)
-+.+..+..++..|.+++..+-.+-+.+-..+.... -.|.+++=......+.+-|.+=..+|.+-
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~---------------~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLS---------------SEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888999999988888776654433332221 12566666667778888888888888643
Q ss_pred cccccccCChhhHHHH
Q 031612 132 TRDEDHDSNSEDINKL 147 (156)
Q Consensus 132 ~~~~~~~~~~~d~n~~ 147 (156)
-+ .......++++++
T Consensus 136 ~~-~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 136 RS-GSKPVSPEEKEKL 150 (169)
T ss_pred Hh-CCCCCCHHHHHHH
Confidence 22 1111245555544
No 198
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.12 E-value=2e+02 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.472 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
..++|+.++.++-++|....+++.++-+
T Consensus 18 afIerIERlEeEk~~i~~dikdvy~eak 45 (85)
T COG3750 18 AFIERIERLEEEKKTIADDIKDVYAEAK 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888887754
No 199
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=22.12 E-value=2.1e+02 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcC---CC-CCChhhHHHHH-hHHHHH
Q 031612 90 NRNLVQRMQVSLD---IP-VANESEDASFA-NFKQVI 121 (156)
Q Consensus 90 t~~liQ~LQ~~td---le-plteeE~~a~~-~f~~~I 121 (156)
.|.+-++|.++.+ .| |.|++|+..|. +|..++
T Consensus 92 ~R~~~~~lR~~G~~~~gpk~~~~~d~~~F~~~L~~~l 128 (130)
T PF02639_consen 92 MRHLMAKLRRAGKRTKGPKKFTKKDRQRFANALDRLL 128 (130)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4666666766543 34 89999999997 666654
No 200
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=22.12 E-value=4.6e+02 Score=22.64 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
.+++.||.|-.|+.+|..-++++-+ -.|.+--++|.++.+-++.+-..
T Consensus 166 ~IikDlK~Ln~RVsAlSTVLeDVQA---asIsRqFtsL~KaI~eLk~lA~~ 213 (231)
T PHA02687 166 AILADFKDLTGRVKALSSVLTDVQA---SGVRRSFSGLGKALTEAAAIAAT 213 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999888744 57888888998888888776543
No 201
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=22.06 E-value=4e+02 Score=21.03 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCCCccchhhhHHHHHHHHHh------hhhhHHHHHHHHH--HHHHHhCCCCC-ChHHHHHHHHHHHhhHHHHHHHHHH-
Q 031612 2 GDHNFQHNHQAIDGLVNLLTK------SNHELTMVQYKLE--KEFQQIYPDNA-NPMKLVSRIKKVQEDLPILKEQCRE- 71 (156)
Q Consensus 2 ~~~~~~~~~~aVd~Le~~FqK------AesDLdyIq~RLE--~Ef~~~~pd~a-NPv~Ll~rL~~Iksr~~aL~~q~~~- 71 (156)
++.|--.|..|++.+...|.. -+.|-..|-.-|. |||+ .||-.+ .||.++. ++.+++--
T Consensus 7 ~irne~dy~~Al~eV~~lfd~dpE~~~~e~dr~~Ilatl~eAyE~k-h~~i~aP~pve~I~----------t~Md~~glt 75 (120)
T COG5499 7 PIRNEADYRWALAEVDKLFDNDPENPLLELDRADILATLIEAYEFK-HYPIAAPDPVEVIR----------TLMDQYGLT 75 (120)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhhhhh-hchhhcCCHHHHHH----------HHHHHhCCc
Confidence 345666788888888888865 3344444444443 5665 356665 8887765 23333211
Q ss_pred --HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCC
Q 031612 72 --LLAAKQDLIDKASAILVR----NRNLVQRMQVSLDIPV 105 (156)
Q Consensus 72 --l~aeKqel~d~ir~~L~~----t~~liQ~LQ~~tdlep 105 (156)
=++.-=.|+.++...|++ |.+||.+|-++.|+|+
T Consensus 76 ~~dLa~~iGSks~vS~iL~~rraLTle~ikkL~q~~gIpa 115 (120)
T COG5499 76 LADLANEIGSKSRVSNILSGRRALTLEHIKKLHQRFGIPA 115 (120)
T ss_pred HHHHHHHhCchHHHHHHHhhhhHhhHHHHHHHHHHhCcCH
Confidence 112222344555555554 6788999999999984
No 202
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=21.99 E-value=3e+02 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
+.||++|..+++|++=--+++.+|+.+
T Consensus 2 aevl~el~~vq~RL~Pflery~~iL~~ 28 (120)
T PF12057_consen 2 AEVLQELRRVQERLQPFLERYHEILQE 28 (120)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 468999999999999999998888754
No 203
>PRK11380 hypothetical protein; Provisional
Probab=21.94 E-value=1.7e+02 Score=26.85 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=22.7
Q ss_pred HHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 95 QRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 95 Q~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
++-=+++|++|||||++.++ .|..+-+.|.-
T Consensus 102 ~~yy~~~~~~~LteEq~r~L-~L~aVya~~~g 132 (353)
T PRK11380 102 LRYYQAKGIEPLSEEKRQAL-QLIAVYRFYHG 132 (353)
T ss_pred HHHHHHcCCCCCCHHHHHHH-HHhhHHHHHhh
Confidence 45557899999999999887 56655555443
No 204
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.94 E-value=6e+02 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
-.|+++++.|++++..|.++.+++-.+-.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555544433
No 205
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.94 E-value=7.5e+02 Score=24.10 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CChhhH---HHHHhHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPV---ANESED---ASFANFKQVIDEW 124 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdlep---lteeE~---~a~~~f~~~I~ew 124 (156)
|-.....++.++..|.+++..+..+|+..+.+|..--..--.|-.++.......| +|+.|. +-...+.+=+..|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344456799999999999999999999999987655443333222222221112 344442 2334688888999
Q ss_pred HHhhcccc
Q 031612 125 TVQVRSRT 132 (156)
Q Consensus 125 t~~~~~~~ 132 (156)
..++....
T Consensus 100 ~~qlqaqv 107 (617)
T PF15070_consen 100 EEQLQAQV 107 (617)
T ss_pred HHHHHHHH
Confidence 98887544
No 206
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.92 E-value=3.4e+02 Score=27.78 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
..-++++..++.||..|..+.+++-.++..+.+.|.
T Consensus 966 ~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~ 1001 (1163)
T COG1196 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIE 1001 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888876665553
No 207
>PF04353 Rsd_AlgQ: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; InterPro: IPR007448 This family includes bacterial transcriptional regulators that are thought to act through an interaction with the conserved region 4 of the sigma(70) subunit of RNA polymerase. The Pseudomonas aeruginosa homologue, AlgQ, positively regulates virulence gene expression and is associated with the mucoid phenotype observed in P. aeruginosa isolates from cystic fibrosis patients.; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_A.
Probab=21.73 E-value=3.3e+02 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC----ChhhHHHHHhHHHHH
Q 031612 85 AILVRNRNLVQRMQVSLDIPVA----NESEDASFANFKQVI 121 (156)
Q Consensus 85 ~~L~~t~~liQ~LQ~~tdlepl----teeE~~a~~~f~~~I 121 (156)
+=|..-+.||-..++-+|++|. +.-...+..+||+..
T Consensus 21 ~WL~~Rq~Llv~Yc~L~gl~p~~~~~~~~~~~~l~~FCq~L 61 (153)
T PF04353_consen 21 RWLEERQQLLVAYCKLAGLKPYKESLTLPSEEALQNFCQQL 61 (153)
T ss_dssp HHHHHHHHHHHHHHHHHS-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcCCCCccccCCCCHHHHHHHHHHH
Confidence 3444455667777888888876 555667778898864
No 208
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.45 E-value=9.6e+02 Score=25.22 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh--CCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----H
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQI--YPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA----S 84 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~--~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i----r 84 (156)
...+.+......|-..+.-++.+|+.+-... ++.+...-.|=+++....++++.+.++....-..-.++-+++ +
T Consensus 65 ~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq 144 (1109)
T PRK10929 65 ERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQ 144 (1109)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchh
Confidence 3445555666666677777777777532211 112235677888888888888888777776555554444444 2
Q ss_pred HHHHHHHHHHHHHHhhcCC-----CCCChhh
Q 031612 85 AILVRNRNLVQRMQVSLDI-----PVANESE 110 (156)
Q Consensus 85 ~~L~~t~~liQ~LQ~~tdl-----eplteeE 110 (156)
+. ..++..+|++..+..- +|++++.
T Consensus 145 ~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~ 174 (1109)
T PRK10929 145 QQ-TEARRQLNEIERRLQTLGTPNTPLAQAQ 174 (1109)
T ss_pred hH-HHHHHHHHHHHHHHhCCCCCCCcccHHH
Confidence 22 6677777777654332 3666544
No 209
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=21.28 E-value=2.9e+02 Score=22.53 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--h-------hhHHHHHhHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVAN--E-------SEDASFANFKQVID 122 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplt--e-------eE~~a~~~f~~~I~ 122 (156)
.+.|+++.+..+.+.+..+..+..=+.-+ +.. ..-+..++.++.+.|+.|+. + ....-|.-+..=|-
T Consensus 25 ~~dl~~L~~qa~~~~~~l~~fa~k~~~~i---~~~-~~~r~~f~~~~~~lGvdp~~s~~~~s~~l~~~~~f~~ELa~qi~ 100 (223)
T PF04157_consen 25 FQDLEALMSQAKDFVELLENFARKHKSEI---KSD-PEFRSQFQSMCASLGVDPLASSKFWSESLKGSGDFYYELAVQIA 100 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCS-HHHHHHHHHHHHHHT--CHCCTTCCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCC-chHHHHHHHHHHHcCCCcccchhhhhhccccchhHHHHHHHHHH
Confidence 34666666666666666666655422111 110 01133788899999998663 2 23344567888888
Q ss_pred HHHHhhcccccccc
Q 031612 123 EWTVQVRSRTRDED 136 (156)
Q Consensus 123 ewt~~~~~~~~~~~ 136 (156)
||-...+++.|+-+
T Consensus 101 e~c~~~~~~~GGii 114 (223)
T PF04157_consen 101 EVCLATRSKNGGII 114 (223)
T ss_dssp HHHHHHCCTTTSEE
T ss_pred HHHHHHHhcCCCEE
Confidence 99998888888555
No 210
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.26 E-value=4.9e+02 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
+|..+.++...|..+|..+...=+.++|.-+.-..++...+.-|..-
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~ 49 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDL 49 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46667777888888888888888888887777777777777755554
No 211
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=21.18 E-value=5e+02 Score=21.79 Aligned_cols=108 Identities=11% Similarity=0.175 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-------CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-------ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-------aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i 83 (156)
.-+.+|..+...+.+ |.|--..++-+|...||+- ..+... +...+...|..-..-...-=+..+.+
T Consensus 82 ~~l~~l~~L~~q~q~-l~~~~~~~~~~f~~~y~~~~~y~~~~~~~~~~------~~~~~~~ws~~~~~~~~~al~~~~~~ 154 (246)
T TIGR02780 82 SSLQKLTNIISQAQA-LAYDIANLDDIFSQLYQGYDSYAASSGSDRQN------MSDAYARWAQTTRDTAEDALSMAGLQ 154 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCcChhhhhcCCcchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888887 8999999999999999973 122222 22233444444433333333344444
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhh
Q 031612 84 SAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 84 r~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~ 128 (156)
...+......++.|+.++--.+ --..+...=|++-..=+.|+
T Consensus 155 ~~~~~~~~~~l~~L~~~sq~A~---G~lqA~Qa~Nql~a~q~~Ql 196 (246)
T TIGR02780 155 TGNLAEDNATLDQLQSLSQSAS---GQLQALQAGNQLAAQQSKQL 196 (246)
T ss_pred HHhHhhhHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566665544331 12334444444444444443
No 212
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=21.17 E-value=4.3e+02 Score=21.05 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCC-C-ChHH----HHHHHHHHHhhHHHHH
Q 031612 23 SNHELTMVQYKLEKEFQQIYPDN-A-NPMK----LVSRIKKVQEDLPILK 66 (156)
Q Consensus 23 AesDLdyIq~RLE~Ef~~~~pd~-a-NPv~----Ll~rL~~Iksr~~aL~ 66 (156)
++.|...|..+-..=-++.|||. + +|.+ -.+.-+.|..-|.+|+
T Consensus 13 ~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~ 62 (171)
T PRK05014 13 YDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLK 62 (171)
T ss_pred CCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 35677777777777778889986 2 3322 1334455666666665
No 213
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.97 E-value=6.2e+02 Score=25.99 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 031612 9 NHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQD 78 (156)
Q Consensus 9 ~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqe 78 (156)
|-..|..|...+++++.-+.|=+..+..|+ .-++.||++-.-+|+++..+=-+
T Consensus 585 lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei-----------------~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 585 LVQQVEDLRQTLSKKEQQAARREDMFRGEI-----------------EDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhccc
Confidence 446788888888888888887777666655 45788999999999988765443
No 214
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=20.88 E-value=4.5e+02 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHhCCCC
Q 031612 26 ELTMVQYKLEKEFQQIYPDN 45 (156)
Q Consensus 26 DLdyIq~RLE~Ef~~~~pd~ 45 (156)
|...|..+--.=-++.|||.
T Consensus 19 d~~~L~~~Yr~Lq~~~HPDk 38 (173)
T PRK00294 19 DLDQLATRYRELAREVHPDR 38 (173)
T ss_pred CHHHHHHHHHHHHHHHCcCC
Confidence 34444444444445668885
No 215
>PF15294 Leu_zip: Leucine zipper
Probab=20.85 E-value=4.3e+02 Score=23.42 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=58.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCh--hhHHHHHhHHHHHHHHHHh
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP--VANE--SEDASFANFKQVIDEWTVQ 127 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle--plte--eE~~a~~~f~~~I~ewt~~ 127 (156)
-+.|+.+...+.+|+.+++.-+.........+..+|..+..=|-+.|.+..+. +|+. -+-++|.|..++++-=..|
T Consensus 189 ~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~Q 268 (278)
T PF15294_consen 189 AQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQ 268 (278)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHH
Confidence 35667788888999999998888888888899999999999899999886544 2210 1346788999888765555
Q ss_pred h
Q 031612 128 V 128 (156)
Q Consensus 128 ~ 128 (156)
+
T Consensus 269 i 269 (278)
T PF15294_consen 269 I 269 (278)
T ss_pred H
Confidence 4
No 216
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=20.61 E-value=2e+02 Score=17.95 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=5.4
Q ss_pred HHHHHHHhhcCCC
Q 031612 92 NLVQRMQVSLDIP 104 (156)
Q Consensus 92 ~liQ~LQ~~tdle 104 (156)
..|.++|+..|++
T Consensus 32 ~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 32 EAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHTTS-
T ss_pred HHHHHHHHHcCcC
Confidence 3344444444444
No 217
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=20.51 E-value=3.8e+02 Score=20.20 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 57 KVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 57 ~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
.|+.+..++.+-|.+|=.+.. ...+.-+.+|.||-+||.-
T Consensus 7 ~v~~er~~~~~L~~ELEeER~----AaAsAA~EAMaMI~RLQ~E 46 (94)
T PF04576_consen 7 AVEAERKALAALYAELEEERS----AAASAASEAMAMILRLQEE 46 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 344555555555555544432 2334456789999999963
No 218
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=20.51 E-value=1.6e+02 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hcCCCCC
Q 031612 78 DLIDKASAILVRNRNLVQRMQV--SLDIPVA 106 (156)
Q Consensus 78 el~d~ir~~L~~t~~liQ~LQ~--~tdlepl 106 (156)
+-++..+++|+..++++.+|+. ..|++|+
T Consensus 22 ee~e~~~~~l~~Il~~veql~evD~~~vep~ 52 (96)
T COG0721 22 EELEKFATQLEDILGYVEQLNEVDTEGVEPT 52 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcc
Confidence 4455556666666666666654 2344444
No 219
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=20.49 E-value=2.8e+02 Score=21.72 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=9.5
Q ss_pred CCChhhHHHHHhHHHHHHHHHHhh
Q 031612 105 VANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 105 plteeE~~a~~~f~~~I~ewt~~~ 128 (156)
+||..++++. |..|...+
T Consensus 40 ~LTp~qKe~~------I~s~~~~L 57 (118)
T PF05812_consen 40 VLTPAQKEAM------ITSAVSKL 57 (118)
T ss_dssp B--HHHHHHH------HHHHHHHH
T ss_pred ccChHHHHHH------HHHHHHHH
Confidence 7777777664 55555443
No 220
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=20.17 E-value=2.7e+02 Score=21.16 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 031612 33 KLEKEFQQIYPDNANPMKLVSRIKKVQE 60 (156)
Q Consensus 33 RLE~Ef~~~~pd~aNPv~Ll~rL~~Iks 60 (156)
.|..||++.||. +|.+.++.|.+-..
T Consensus 3 ~l~eEI~rdY~n--~s~~v~E~l~~~~~ 28 (100)
T PF11291_consen 3 SLKEEIRRDYPN--FSEEVFEKLNRCSV 28 (100)
T ss_pred hHHHHHHHHhhh--chHHHHHHHHHHHH
Confidence 588999999997 67777776655433
No 221
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=20.15 E-value=60 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.6
Q ss_pred CCCCc-cchhhhHHHHHHHHHh
Q 031612 2 GDHNF-QHNHQAIDGLVNLLTK 22 (156)
Q Consensus 2 ~~~~~-~~~~~aVd~Le~~FqK 22 (156)
||.|| +.|-.|++++...|..
T Consensus 72 Gn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 72 GNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred CCCchHHHHHHHHHHHHHHhCC
Confidence 89999 9999999999998887
No 222
>PLN02320 seryl-tRNA synthetase
Probab=20.04 E-value=7.7e+02 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAK 76 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeK 76 (156)
..-.|+++.+.|+.++.+|.++.+++-.+-
T Consensus 131 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 131 ERQALVEEGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655554433
No 223
>PHA03162 hypothetical protein; Provisional
Probab=20.00 E-value=3.8e+02 Score=21.59 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHhhcCCCC------CChhhHHHHHhHHHHHHHHHHhh------------ccccccccccCChhhHHHHHHHH
Q 031612 96 RMQVSLDIPV------ANESEDASFANFKQVIDEWTVQV------------RSRTRDEDHDSNSEDINKLLFSA 151 (156)
Q Consensus 96 ~LQ~~tdlep------lteeE~~a~~~f~~~I~ewt~~~------------~~~~~~~~~~~~~~d~n~~lfsa 151 (156)
+|.+++|.+| ||..++++. |..|+..+ +..+.... ..++++.+|-+.
T Consensus 35 kl~~~~~~~~~p~d~~LTp~qKea~------I~s~v~~Lts~A~kKIe~KVr~~t~~~v---Tk~e~e~aL~~l 99 (135)
T PHA03162 35 KIKEGTDDDPLPGDPILTPAAKEAM------IGAATAALTRQAAKKIEAKIRHETLKAT---TKEEFEAAIANI 99 (135)
T ss_pred HHHhccCCCCCCCCccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccc---cHHHHHHHHhcC
Confidence 3555555544 887777664 66665544 44444333 456677777553
Done!