Query 031612
Match_columns 156
No_of_seqs 54 out of 56
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aj5_K Spindle and kinetochore 100.0 3.7E-49 1.3E-53 302.6 13.8 112 8-119 2-118 (123)
2 3anw_B GINS23, putative unchar 86.5 6.5 0.00022 31.1 9.8 59 64-125 106-168 (171)
3 2yy0_A C-MYC-binding protein; 84.4 1.3 4.3E-05 28.9 4.0 45 26-74 3-47 (53)
4 1use_A VAsp, vasodilator-stimu 81.3 5 0.00017 25.8 5.8 33 55-89 9-41 (45)
5 3uun_A Dystrophin; triple heli 74.6 16 0.00055 24.3 10.9 64 6-80 4-70 (119)
6 3pe0_A Plectin; cytoskeleton, 74.3 34 0.0012 27.8 12.3 86 14-99 8-101 (283)
7 3uul_A Utrophin; spectrin repe 69.5 22 0.00076 23.7 10.9 60 5-75 3-65 (118)
8 2etd_A LEMA protein; bromodoma 69.3 37 0.0013 26.2 9.9 122 1-131 1-140 (171)
9 2w3l_A BCL2-XL, apoptosis regu 69.1 31 0.0011 25.3 8.6 64 28-123 9-74 (144)
10 3efg_A Protein SLYX homolog; x 68.8 15 0.0005 25.3 6.0 54 47-100 8-64 (78)
11 1hx1_B BAG-1, BAG-family molec 63.7 44 0.0015 25.0 8.4 81 10-101 17-113 (114)
12 1wrd_A TOM1, target of MYB pro 61.7 40 0.0014 23.9 7.6 79 50-133 10-98 (103)
13 4fla_A Regulation of nuclear P 60.6 54 0.0018 25.0 10.6 68 10-84 67-134 (152)
14 2kmf_A Photosystem II 11 kDa p 59.5 14 0.00047 27.6 4.7 49 88-136 18-66 (115)
15 2y6w_A BCL-2-like protein 2; a 59.0 12 0.00042 28.9 4.5 37 1-37 1-38 (177)
16 4h8s_A DCC-interacting protein 59.0 78 0.0027 26.4 10.0 78 51-128 42-123 (407)
17 3tq2_A KE1; parallel three hel 58.8 27 0.00093 21.0 5.1 20 55-74 3-22 (36)
18 3r6n_A Desmoplakin; spectrin r 58.6 95 0.0033 27.2 12.1 86 14-99 93-186 (450)
19 2p32_A Heat shock 70 kDa prote 57.8 17 0.00058 25.8 4.8 35 1-35 1-35 (120)
20 2y6x_A PSB27, photosystem II 1 56.5 16 0.00056 27.1 4.7 49 88-136 14-62 (113)
21 2iak_A Bullous pemphigoid anti 56.1 46 0.0016 25.3 7.4 66 14-79 120-186 (224)
22 3pdy_A Plectin; cytoskeleton, 54.7 67 0.0023 24.3 9.5 65 15-79 106-171 (210)
23 2oxj_A Hybrid alpha/beta pepti 52.8 22 0.00074 21.6 3.9 25 60-84 1-25 (34)
24 1gl2_B Syntaxin 7; membrane pr 51.8 46 0.0016 21.5 7.3 44 53-96 9-55 (65)
25 2nps_B Syntaxin 13, vesicle-as 51.1 49 0.0017 21.6 7.3 43 53-95 6-51 (71)
26 3hd7_B Syntaxin-1A; membrane p 50.6 64 0.0022 22.9 7.3 58 21-96 7-67 (109)
27 2pfz_A Putative exported prote 50.6 68 0.0023 25.4 7.8 38 90-128 247-287 (301)
28 2hpg_A ABC transporter, peripl 50.4 55 0.0019 26.6 7.4 36 89-125 268-306 (327)
29 3hhm_B NISH2 P85alpha; PI3KCA, 49.1 1.3E+02 0.0044 25.9 11.1 40 30-69 179-221 (373)
30 2lnz_A Ubiquitin-like protein 46.9 14 0.00048 25.2 2.7 21 81-101 32-60 (64)
31 3fxb_A Trap dicarboxylate tran 46.5 40 0.0014 27.4 5.9 39 91-129 265-307 (326)
32 2pfy_A Putative exported prote 46.2 84 0.0029 24.8 7.7 37 91-128 249-288 (301)
33 2zvf_A Alanyl-tRNA synthetase; 46.1 46 0.0016 24.4 5.8 30 46-75 25-54 (171)
34 1jth_B Syntaxin 1A; coiled-coi 45.9 62 0.0021 21.4 7.3 43 53-95 10-55 (77)
35 3b5n_B Protein SSO1; snare com 44.5 63 0.0021 21.0 7.3 43 53-95 10-55 (69)
36 1zxa_A CGMP-dependent protein 44.0 25 0.00084 24.0 3.6 41 62-102 9-49 (67)
37 3aai_A Copper homeostasis oper 43.7 82 0.0028 22.1 8.5 42 49-94 14-62 (94)
38 3vkg_A Dynein heavy chain, cyt 43.5 1.4E+02 0.0048 32.9 10.8 44 51-94 2033-2079(3245)
39 2avr_X Adhesion A; antiparalle 43.4 1E+02 0.0035 23.1 8.4 51 49-99 5-55 (119)
40 1n7s_B Syntaxin 1A; neuronal s 43.2 65 0.0022 20.8 7.3 43 53-95 12-57 (68)
41 3iee_A Putative exported prote 42.6 1.2E+02 0.0041 25.6 8.4 29 102-130 216-246 (270)
42 3rh3_A Uncharacterized DUF3829 42.5 64 0.0022 27.2 6.6 54 91-147 197-253 (264)
43 1zs3_A Lactococcus lactis Mg13 42.2 94 0.0032 24.0 7.2 98 15-113 60-180 (182)
44 1ohu_A Apoptosis regulator CED 40.6 86 0.003 24.2 6.8 13 28-43 19-31 (175)
45 2vpn_A Periplasmic substrate b 40.6 73 0.0025 25.4 6.6 39 90-128 250-292 (316)
46 3fb2_A Spectrin alpha chain, b 40.1 1.1E+02 0.0039 22.7 8.7 11 1-11 1-11 (218)
47 1tt9_A Formimidoyltransferase- 39.8 1E+02 0.0035 28.2 8.0 69 47-115 369-437 (541)
48 3iyd_F RNA polymerase sigma fa 38.3 38 0.0013 30.5 4.9 43 9-51 262-316 (613)
49 2hzl_A Trap-T family sorbitol/ 38.3 1.3E+02 0.0046 24.3 7.9 37 90-127 284-323 (365)
50 3nrk_A LIC12922; NC domain, pa 38.2 1.3E+02 0.0046 24.3 7.9 94 29-125 61-157 (325)
51 2hh7_A Hypothetical protein CS 37.9 1.1E+02 0.0036 22.8 6.6 49 50-102 11-67 (119)
52 2q13_A DCC-interacting protein 37.8 1.7E+02 0.0058 24.1 10.7 74 53-126 21-98 (385)
53 2ims_A Apoptosis regulator BAK 37.6 1.3E+02 0.0044 22.7 10.7 30 3-38 3-32 (171)
54 4adz_A CSOR; transcription, co 37.3 1.1E+02 0.0036 23.5 6.6 21 49-69 52-72 (136)
55 2b0h_A Talin-1; vinculin, heli 36.9 1.2E+02 0.004 23.0 6.8 30 45-74 40-69 (137)
56 1fxk_C Protein (prefoldin); ar 36.5 1.1E+02 0.0038 21.6 6.4 50 47-104 2-51 (133)
57 1sfc_B Protein (syntaxin 1A), 36.3 97 0.0033 20.8 7.3 57 21-95 7-66 (83)
58 3fs3_A Nucleosome assembly pro 36.1 1E+02 0.0035 26.8 7.1 83 11-95 16-99 (359)
59 2rnn_A E3 SUMO-protein ligase 36.1 53 0.0018 24.4 4.7 51 41-91 16-75 (114)
60 4i0x_A ESAT-6-like protein MAB 36.0 96 0.0033 20.7 5.9 52 69-128 5-56 (94)
61 2yy0_A C-MYC-binding protein; 35.3 87 0.003 20.0 5.1 45 37-83 5-49 (53)
62 3etw_A Adhesin A; antiparallel 35.2 1.4E+02 0.0047 22.2 8.4 53 49-101 5-57 (119)
63 3q0x_A Centriole protein; cent 35.1 1.1E+02 0.0037 25.0 6.8 47 50-100 168-214 (228)
64 2lig_A Aspartate receptor; che 35.0 98 0.0034 20.5 6.6 80 50-129 64-149 (164)
65 3t98_B Nucleoporin NUP58/NUP45 34.5 1.2E+02 0.0041 21.4 7.3 75 2-79 1-77 (93)
66 1m1j_C Fibrinogen gamma chain; 33.9 2.4E+02 0.0083 24.7 12.3 63 33-99 59-126 (409)
67 1ez3_A Syntaxin-1A; three heli 33.5 1.2E+02 0.004 21.0 7.7 24 50-73 9-32 (127)
68 4adz_A CSOR; transcription, co 33.5 1.6E+02 0.0055 22.5 10.8 57 4-68 42-98 (136)
69 1i4d_A Arfaptin 2, partner of 33.4 1.9E+02 0.0066 23.4 8.4 56 14-72 103-158 (224)
70 3a6m_A Protein GRPE, HSP-70 co 33.1 1.7E+02 0.0058 22.6 8.3 89 10-107 32-120 (177)
71 1yke_B RNA polymerase II holoe 33.0 1.6E+02 0.0055 22.3 11.4 66 23-89 62-128 (151)
72 1taf_B TFIID TBP associated fa 32.9 1.1E+02 0.0038 20.5 6.2 53 93-148 11-68 (70)
73 3o0z_A RHO-associated protein 32.9 1.3E+02 0.0044 23.7 6.6 70 16-85 60-129 (168)
74 1go4_E MAD1 (mitotic arrest de 32.3 1.4E+02 0.0049 21.6 7.3 68 3-72 4-87 (100)
75 1cun_A Protein (alpha spectrin 32.1 1.4E+02 0.0049 21.5 9.4 24 47-70 73-96 (213)
76 3ghg_A Fibrinogen alpha chain; 32.1 41 0.0014 31.2 4.1 50 51-104 107-157 (562)
77 3c3f_A Alpha/beta peptide with 30.7 79 0.0027 19.1 3.9 24 60-83 1-24 (34)
78 2kvp_A Talin-1; VBS, vinculin, 29.5 1.6E+02 0.0053 22.9 6.6 52 46-97 69-126 (165)
79 2yko_A LINE-1 ORF1P; RNA-bindi 28.9 2.4E+02 0.0083 23.2 8.1 77 52-129 5-87 (233)
80 4aq3_A Apoptosis regulator BCL 28.8 1.9E+02 0.0065 22.1 6.9 26 93-123 73-98 (169)
81 2pih_A Protein YMCA; regulate 28.4 1.8E+02 0.0062 21.5 9.2 59 50-111 70-131 (151)
82 1wt6_A Myotonin-protein kinase 28.3 1.6E+02 0.0054 20.8 7.1 46 27-79 12-57 (81)
83 1s35_A Beta-I spectrin, spectr 28.3 1.7E+02 0.0059 21.3 8.6 23 50-72 144-166 (214)
84 3c3g_A Alpha/beta peptide with 28.1 94 0.0032 18.6 3.9 23 61-83 1-23 (33)
85 3jsv_C NF-kappa-B essential mo 27.9 1.3E+02 0.0043 21.8 5.3 63 67-129 12-78 (94)
86 4dzn_A Coiled-coil peptide CC- 27.8 98 0.0034 18.3 3.9 19 50-68 6-24 (33)
87 3qbr_A SJA, sjchgc06286 protei 27.6 2.3E+02 0.0077 22.4 8.1 82 15-123 23-112 (179)
88 2zdi_C Prefoldin subunit alpha 27.4 1.4E+02 0.0048 21.8 5.8 51 49-99 94-144 (151)
89 1i6z_A BAG-family molecular ch 27.3 2.1E+02 0.0071 21.8 12.7 50 52-101 58-123 (135)
90 3oja_B Anopheles plasmodium-re 27.0 1.5E+02 0.0051 25.4 6.7 64 10-73 462-529 (597)
91 4ew8_A Sensor protein DIVL; si 26.4 1.9E+02 0.0066 21.2 9.6 21 77-97 76-96 (268)
92 3vp9_A General transcriptional 26.3 40 0.0014 24.2 2.4 50 45-95 6-56 (92)
93 1ez3_A Syntaxin-1A; three heli 26.2 1.6E+02 0.0055 20.2 10.0 36 2-38 3-38 (127)
94 1sig_A Sigma70, RNA polymerase 26.1 2.6E+02 0.0089 22.6 11.9 40 11-50 155-206 (339)
95 3t97_B Nuclear pore complex pr 26.0 1.5E+02 0.0053 19.9 7.6 50 50-104 14-63 (65)
96 4igg_A Catenin alpha-1; asymme 25.9 4.4E+02 0.015 25.2 11.3 92 38-129 309-415 (832)
97 1fxk_A Prefoldin; archaeal pro 25.8 1.5E+02 0.0053 19.8 5.6 32 50-81 5-36 (107)
98 2qyw_A Vesicle transport throu 25.6 1.7E+02 0.0059 20.4 9.1 76 47-128 9-94 (102)
99 2oa5_A Hypothetical protein BQ 25.4 99 0.0034 23.0 4.5 24 46-69 8-31 (110)
100 1kd8_B GABH BLL, GCN4 acid bas 25.2 1.1E+02 0.0038 18.6 3.9 25 60-84 1-25 (36)
101 2wl8_A Peroxisomal biogenesis 25.2 1.4E+02 0.0047 22.3 5.3 12 91-102 95-106 (126)
102 2bni_A General control protein 24.9 99 0.0034 18.6 3.6 24 60-83 1-24 (34)
103 2xze_Q Charged multivesicular 24.8 43 0.0015 20.8 2.0 13 54-66 27-39 (40)
104 3viq_B Mating-type switching p 24.6 1.9E+02 0.0064 20.4 5.8 25 50-74 5-29 (85)
105 4egw_A Magnesium transport pro 24.3 2.6E+02 0.0088 21.9 9.2 45 69-115 196-240 (280)
106 2zzv_A ABC transporter, solute 24.1 2.7E+02 0.0094 22.4 7.5 34 91-125 292-328 (361)
107 2dq0_A Seryl-tRNA synthetase; 24.0 3.3E+02 0.011 23.8 8.3 63 13-75 30-98 (455)
108 3gwk_C SAG1039, putative uncha 23.9 1.5E+02 0.0053 19.2 7.8 44 77-128 21-64 (98)
109 2zqm_A Prefoldin beta subunit 23.9 1.8E+02 0.006 19.8 6.3 35 51-85 75-109 (117)
110 2c9l_Y EB1, zebra, BZLF1 trans 23.8 1.4E+02 0.0047 20.0 4.5 38 60-104 18-55 (63)
111 3vej_A Ubiquitin-like protein 23.6 64 0.0022 20.1 2.7 19 81-99 9-35 (41)
112 1cun_A Protein (alpha spectrin 23.1 2.1E+02 0.0073 20.6 10.1 32 47-78 140-171 (213)
113 1joc_A EEA1, early endosomal a 22.9 1.7E+02 0.0058 21.1 5.4 25 55-79 20-44 (125)
114 1x79_B RAB GTPase binding effe 22.8 2.3E+02 0.0079 20.8 7.5 75 54-128 7-82 (112)
115 2e50_A Protein SET; histone ch 22.6 2.9E+02 0.01 21.9 7.6 48 47-94 27-75 (225)
116 2d4u_A Methyl-accepting chemot 22.5 1.9E+02 0.0067 19.9 6.8 47 77-126 68-114 (176)
117 2vof_A BCL-2-related protein A 21.9 2.5E+02 0.0084 20.8 6.5 14 110-123 69-82 (157)
118 1bf5_A Signal transducer and a 21.9 4.7E+02 0.016 24.1 9.8 79 10-93 8-92 (575)
119 1quu_A Human skeletal muscle a 21.9 2.6E+02 0.009 21.1 8.2 34 47-80 49-82 (250)
120 1tr2_A Vinculin isoform 1; act 21.8 4.3E+02 0.015 25.5 9.3 91 41-131 598-709 (1066)
121 1naf_A ADP-ribosylation factor 21.3 2.8E+02 0.0095 21.2 7.5 81 52-132 59-146 (158)
122 2kes_A Synphilin-1; synphillin 20.9 1.7E+02 0.0059 18.6 4.7 29 49-77 14-42 (48)
123 3edu_A Beta-I spectrin, spectr 20.8 2.6E+02 0.0089 20.6 9.6 63 18-80 5-69 (218)
124 3s0r_A De novo designed helica 20.6 55 0.0019 19.0 1.8 15 22-36 2-16 (30)
125 3v86_A De novo design helix; c 20.3 1.3E+02 0.0045 17.0 3.8 22 51-72 5-26 (27)
126 1ykh_B RNA polymerase II holoe 20.2 2.6E+02 0.009 20.5 11.3 65 24-89 63-128 (132)
127 1rtm_1 Mannose-binding protein 20.2 1E+02 0.0035 21.5 3.6 24 51-74 2-25 (149)
128 1zuj_A Hypothetical protein ll 20.1 3E+02 0.01 21.0 7.2 96 15-111 59-177 (179)
129 2hy6_A General control protein 20.1 1.4E+02 0.0049 17.9 3.6 24 61-84 2-25 (34)
No 1
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=100.00 E-value=3.7e-49 Score=302.63 Aligned_cols=112 Identities=22% Similarity=0.412 Sum_probs=101.4
Q ss_pred chhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 8 HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 8 ~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a---NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
+-++|||+|++||+||+|||+||||||||||+++||||| |||+||+|||+||+||++||+||++|+++|||+||+||
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir 81 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRIC 81 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCCChhhHHHHHhHHH
Q 031612 85 AILVRNRNLVQRMQVSLD--IPVANESEDASFANFKQ 119 (156)
Q Consensus 85 ~~L~~t~~liQ~LQ~~td--leplteeE~~a~~~f~~ 119 (156)
++|++||+|||+||+++| ++||||||++|-..|++
T Consensus 82 ~tL~~tm~miQ~LQ~~td~el~plteeE~~a~~~l~~ 118 (123)
T 4aj5_K 82 ATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKF 118 (123)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHh
Confidence 999999999999999999 55999999999876654
No 2
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=86.51 E-value=6.5 Score=31.11 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C---CCCCChhhHHHHHhHHHHHHHHH
Q 031612 64 ILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSL-D---IPVANESEDASFANFKQVIDEWT 125 (156)
Q Consensus 64 aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t-d---leplteeE~~a~~~f~~~I~ewt 125 (156)
.+...+.++-..++.+.+-.+.-+.+...++ .-.. + +.-||+||+..|.++..+|++|.
T Consensus 106 ~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la---~~~~~~~eil~rLTpEEk~iy~~l~~~i~~w~ 168 (171)
T 3anw_B 106 TINVKLTKLANLRKKLRDLKLIRFNKILKAV---MLRPNSLELLSRLAPEERRIYLQMSKIRNEWL 168 (171)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC--CCHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 3333445566666666666666665554444 1111 1 33699999999999999999995
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.42 E-value=1.3 Score=28.89 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 26 ELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 26 DLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
-|+||++-|-- .-|..+.=-+|..++..+|.++..|..+++++-+
T Consensus 3 AlefIk~~LG~----~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 3 ALDFLKHHLGA----ATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777621 2344445556777777777777777777777654
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=81.33 E-value=5 Score=25.78 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
|.++|.+ .|++--++|...|+|++|.|++-|++
T Consensus 9 le~~KqE--IL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 9 LQRVKQE--LLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 47788889999999999999998875
No 5
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=74.57 E-value=16 Score=24.31 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=39.3
Q ss_pred ccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 031612 6 FQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMK---LVSRIKKVQEDLPILKEQCRELLAAKQDLI 80 (156)
Q Consensus 6 ~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~---Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~ 80 (156)
...|+.+++.|..++..++..|. ..-|-..+|-. ++++.+.++.++.+-...+..|...=+.++
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~-----------~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~ 70 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQ-----------AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLI 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678888888888887766553 23444456554 355556666666666666655555444443
No 6
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=74.27 E-value=34 Score=27.85 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLID-------KASA 85 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d-------~ir~ 85 (156)
..|-..|+.++-.+..|.-|...+.-+-+.+. .|+..+++.-++++.++.+-..++..|...=++|+. .|++
T Consensus 8 ~~L~qF~~d~~~e~~Wi~Eke~~~~~~D~~~~~~~l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~ 87 (283)
T 3pe0_A 8 ESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVES 87 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 45778899999999999999999888888875 479999999999999999999999998887777653 4555
Q ss_pred HHHHHHHHHHHHHh
Q 031612 86 ILVRNRNLVQRMQV 99 (156)
Q Consensus 86 ~L~~t~~liQ~LQ~ 99 (156)
.+..-.+.-+.|..
T Consensus 88 r~~~L~~~W~~L~~ 101 (283)
T 3pe0_A 88 FQAALQTQWSWMLQ 101 (283)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55444444444433
No 7
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=69.48 E-value=22 Score=23.72 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=35.9
Q ss_pred CccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHH---HHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 5 NFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKL---VSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 5 ~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~L---l~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
+...|+.+++.|..++..++.-|. ..-|-..+|-.+ +++.+.++.++.+-...+..|...
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~-----------~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQ-----------EQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-----------TSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999888766542 234444566554 444555555555555555544443
No 8
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=69.27 E-value=37 Score=26.22 Aligned_cols=122 Identities=13% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCCCCccchhhhHHHHHHHHHhhhhhHHH-HHHHHHH-----HHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 1 MGDHNFQHNHQAIDGLVNLLTKSNHELTM-VQYKLEK-----EFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 1 ~~~~~~~~~~~aVd~Le~~FqKAesDLdy-Iq~RLE~-----Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
||....+|||--.-.+...-..|-+++|- +++|.+. +.-+.|... --.+|+.+.+..++... -..+.+...
T Consensus 1 ~~~~~~~~~~~~~~~l~~~v~~a~s~Id~qL~RR~dLipnLv~tvk~ya~h--E~~tl~~v~~aR~~~~~-~~~~~~~~~ 77 (171)
T 2etd_A 1 MGSDXIHHHHHHLVSLEQEVQEXYSQIQNQLQRRADLIPNLVETVXGYAAH--EXEILEEIANARAXLIG-AXTPQESAQ 77 (171)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH-CCSHHHHHH
T ss_pred CCcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhcc-cCCHHHHHH
Confidence 78888888888888999999999999974 5666654 444455543 23556666555544321 013444555
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHhhcCCCCCChh-hHH--HHHhHHHHHHHHHHhhccc
Q 031612 75 AKQDLIDKASAIL---------VRNRNLVQRMQVSLDIPVANES-EDA--SFANFKQVIDEWTVQVRSR 131 (156)
Q Consensus 75 eKqel~d~ir~~L---------~~t~~liQ~LQ~~tdlepltee-E~~--a~~~f~~~I~ewt~~~~~~ 131 (156)
++.++-..+++.+ .++-+.. +||.+ |++. ++- +...||..|.+|...++.-
T Consensus 78 ae~~Ls~aL~~L~av~E~YP~LKan~~f~-~Lq~e-----L~~~EnrIa~ARr~YN~aV~~yN~~i~~F 140 (171)
T 2etd_A 78 ADAELSSALSRLLAIAENYPNLXADANFR-QLMDE-----LAGTENRIAVARRDYNEAVXXYNTAIXXF 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHCHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhccCcccccChHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 6666655555443 2222222 23322 2222 222 3348999999998888743
No 9
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=69.14 E-value=31 Score=25.34 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 031612 28 TMVQYKLEKEFQQIYPDNA--NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPV 105 (156)
Q Consensus 28 dyIq~RLE~Ef~~~~pd~a--NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdlep 105 (156)
|||+|||.. ..|+... .|-++...|..+-.++... .....+.|..+.++.|
T Consensus 9 dyi~~~l~~---~g~~~~~~~~p~~~~~~Lr~~gdele~~------------------------~~~~f~~~~~~l~i~~ 61 (144)
T 2w3l_A 9 KYIHYKLSQ---RGYEWDAGADSEVVHKTLREAGDDFSRR------------------------YRRDFAEMSSGLHLTP 61 (144)
T ss_dssp HHHHHHHHH---TTCCCCC---CHHHHHHHHHHHHHHHHH------------------------THHHHHHHHTTCCCCT
T ss_pred HHHHHHhCC---CCCCCcCCCcccHHHHHHHHHHHHHHHH------------------------hHHHHHHHHHHcCCCC
Confidence 899999976 3444333 4544444444333222211 1223444555555543
Q ss_pred CChhhHHHHHhHHHHHHH
Q 031612 106 ANESEDASFANFKQVIDE 123 (156)
Q Consensus 106 lteeE~~a~~~f~~~I~e 123 (156)
+.++..|.++.+|
T Consensus 62 -----~~~~~~f~~Va~e 74 (144)
T 2w3l_A 62 -----FTARGRFATVVEE 74 (144)
T ss_dssp -----TTHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHH
Confidence 2477788887776
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.77 E-value=15 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRE---LLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~---l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
++..|-.||-.+..+++=+..-+++ +.++|+..||++++.|..-+.-++.++.+
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5667788999999998876665554 67889999999999998777777776654
No 11
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=63.73 E-value=44 Score=25.02 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH--------------
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA-------------- 75 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae-------------- 75 (156)
+..|+++..-|..-+.+|+-|++ .+-.. =...+-+++|..|+.+.-++|-.++-.
T Consensus 17 eksv~~~~kkl~~~~~el~~iek--------GFL~k---el~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~~R 85 (114)
T 1hx1_B 17 EKSVEKIADQLEELNKELTGIQQ--------GFLPK---DLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSR 85 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------SCSCH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------ccccc---HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHH
Confidence 44555555666666666655543 22211 122356777777777777777766544
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031612 76 --KQDLIDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 76 --Kqel~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
.|-++++|++.|+.+=+++++++..+
T Consensus 86 ~kRK~lV~~iQ~~l~~cD~l~~~i~~~~ 113 (114)
T 1hx1_B 86 LKRKGLVKKVQAFLAECDTVEQNICQET 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 77899999999999999988876544
No 12
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=61.71 E-value=40 Score=23.93 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhH-----HHHHhHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELL-----AAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESED-----ASFANFKQ 119 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~-----aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~-----~a~~~f~~ 119 (156)
++...|..|+..+.-|.+.+...- ....|++.-+..+.......|++|-... ++++- .+=..++.
T Consensus 10 k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~-----~dee~l~~lL~~ND~L~~ 84 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQI-----ANEQLTEELLIVNDNLNN 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHhhHHHHH
Confidence 345566666666666666655431 2355666666667767777777777632 22221 12226888
Q ss_pred HHHHHHHhhccccc
Q 031612 120 VIDEWTVQVRSRTR 133 (156)
Q Consensus 120 ~I~ewt~~~~~~~~ 133 (156)
++..|..-.+..++
T Consensus 85 vl~ry~~~~~~~~~ 98 (103)
T 1wrd_A 85 VFLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC
Confidence 88888887765554
No 13
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.65 E-value=54 Score=25.04 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
..++++|...|..|-..|.---.||+.|+.... .|++-|..-..-|...-++.+.++.+=++-.+++.
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~-------~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRR-------QLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999875 45565655555555555555555555444444433
No 14
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=59.53 E-value=14 Score=27.56 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhcccccccc
Q 031612 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDED 136 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~~~~~ 136 (156)
..|+.+|+.|+...+++--+..=.++-+...+.|.+|-+.-|+..+..+
T Consensus 18 ~dT~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g 66 (115)
T 2kmf_A 18 QDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 66 (115)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 4688999999999999855444556667999999999999987655444
No 15
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=59.04 E-value=12 Score=28.91 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=10.0
Q ss_pred CCCCCccchhhhHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 031612 1 MGDHNFQHNHQAIDGLVNLLTK-SNHELTMVQYKLEKE 37 (156)
Q Consensus 1 ~~~~~~~~~~~aVd~Le~~FqK-AesDLdyIq~RLE~E 37 (156)
||.|..+||-+--..-..+=.. -.==-|||.|||..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~dYi~y~l~~~ 38 (177)
T 2y6w_A 1 MGSHHHHHHGARQMATPASAPDTRALVADFVGYKLRQK 38 (177)
T ss_dssp -------------------CCCHHHHHHHHHHHHHHHT
T ss_pred CCcccccccccccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 7888765554322221111111 111138999999864
No 16
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=58.97 E-value=78 Score=26.35 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCChhhH---HHHHhHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP-VANESED---ASFANFKQVIDEWTV 126 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle-plteeE~---~a~~~f~~~I~ewt~ 126 (156)
.=+.|..+..++..|...++.+...=+.+++..+..-.+...+++.|..-.... ++++.+. +++..|..++.||..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~ 121 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNL 121 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888888877777777777777777777777776554332 3333332 345678888888876
Q ss_pred hh
Q 031612 127 QV 128 (156)
Q Consensus 127 ~~ 128 (156)
..
T Consensus 122 ~~ 123 (407)
T 4h8s_A 122 LH 123 (407)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=58.80 E-value=27 Score=21.04 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 031612 55 IKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~a 74 (156)
++++|+...+|++||--+.-
T Consensus 3 vsalkekvsalkeqflmlmf 22 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMF 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 68899999999999876543
No 18
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=58.59 E-value=95 Score=27.25 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLID-------KASA 85 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d-------~ir~ 85 (156)
+.|-..|+.++-.+..|.-|-.......+++. .++..++++.+.++.++.+-..+|..|...=+.|+. .|++
T Consensus 93 e~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~ 172 (450)
T 3r6n_A 93 RQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEA 172 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHH
Confidence 35667788888889999999888888888865 488889999999999999999999998888777753 4666
Q ss_pred HHHHHHHHHHHHHh
Q 031612 86 ILVRNRNLVQRMQV 99 (156)
Q Consensus 86 ~L~~t~~liQ~LQ~ 99 (156)
.+..-.+.-+.|+.
T Consensus 173 r~~~L~~~W~~L~~ 186 (450)
T 3r6n_A 173 YMDTLQTQWSWILQ 186 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444444
No 19
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=57.81 E-value=17 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=16.0
Q ss_pred CCCCCccchhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 031612 1 MGDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLE 35 (156)
Q Consensus 1 ~~~~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE 35 (156)
||....+|||...-.++..--.+++=+..++..|+
T Consensus 1 ~~~~~~~~~~~~~re~iEarN~aEsliy~~e~~L~ 35 (120)
T 2p32_A 1 MGSSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIE 35 (120)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67767777887777777667777776666777664
No 20
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=56.54 E-value=16 Score=27.09 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhhcccccccc
Q 031612 88 VRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDED 136 (156)
Q Consensus 88 ~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~~~~~~~~~ 136 (156)
..|+.+|+.|+...+++.-+..=.++-+...+.|.+|-+.-|+..+..+
T Consensus 14 ~dT~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g 62 (113)
T 2y6x_A 14 EDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRS 62 (113)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 4689999999999999854444455667999999999999987754344
No 21
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=56.11 E-value=46 Score=25.30 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA-NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a-NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
+.+...|+.++.-+.-|..+........|+++- +--.|++.-..+++++.+-..++..|...-+++
T Consensus 120 e~l~~F~~~~~~~~~Wi~eke~~~~s~d~g~~l~~v~~L~~kh~~l~~el~~~~~~v~~v~~~g~~L 186 (224)
T 2iak_A 120 DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQL 186 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC---------------CSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 366777888888899999988876555555433 334445555666666665555555554443333
No 22
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=54.72 E-value=67 Score=24.29 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 15 GLVNLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 15 ~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
.|-..|+.++.-+..|.-+-.......+|+. .++-.|.++.+.++.++.+-..++..|...-+++
T Consensus 106 ~L~~f~~~~~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~L 171 (210)
T 3pdy_A 106 SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRL 171 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666788888888888888888888888866 5888888887777777776666666555444433
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=52.85 E-value=22 Score=21.59 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 60 EDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 60 sr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
+||.-|.+.+++|+.+++++-+.+.
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4788899999999999999877654
No 24
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=51.82 E-value=46 Score=21.52 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELL---AAKQDLIDKASAILVRNRNLVQR 96 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~---aeKqel~d~ir~~L~~t~~liQ~ 96 (156)
+.|.+|...+..|..-|++++ .+|.+++|+|-..+..+..-+++
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~ 55 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQ 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777754 67999999999988776665543
No 25
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=51.14 E-value=49 Score=21.64 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELL---AAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~---aeKqel~d~ir~~L~~t~~liQ 95 (156)
+.|..|...+..|..-|.+++ .+|.+++|+|-..+..+..-++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 51 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVE 51 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 457778888888887777755 6799999999988877665544
No 26
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=50.64 E-value=64 Score=22.88 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=41.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 21 TKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL---LAAKQDLIDKASAILVRNRNLVQR 96 (156)
Q Consensus 21 qKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l---~aeKqel~d~ir~~L~~t~~liQ~ 96 (156)
+-|.+.|.+|+.|= +.+.+|.+.+..|...|.++ ..+|.+.+|+|-.....+..-+++
T Consensus 7 ~~a~~~l~~i~eR~------------------~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~ 67 (109)
T 3hd7_B 7 SISKQALSEIETRH------------------SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 67 (109)
T ss_dssp ---CHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888774 34667777777777777775 667999999999988776655543
No 27
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=50.56 E-value=68 Score=25.42 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHHHHHhh
Q 031612 90 NRNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDEWTVQV 128 (156)
Q Consensus 90 t~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~ewt~~~ 128 (156)
+-..++.|++. |++ .+++++.++|. ....+.++|....
T Consensus 247 ~~~~~~~l~~~-G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 287 (301)
T 2pfz_A 247 NSWYKEQLAKN-GMAIIAPTAELKSGLTEVGKRMLDDWLKKA 287 (301)
T ss_dssp HHHHHHHHHHT-TCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677654 887 78888888886 4566788887655
No 28
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=50.37 E-value=55 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHHHH
Q 031612 89 RNRNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDEWT 125 (156)
Q Consensus 89 ~t~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~ewt 125 (156)
.+-..++.|++. |++ ++|++|.++|. ....+.++|.
T Consensus 268 ~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~a~~~v~~~~~ 306 (327)
T 2hpg_A 268 LEEEYKQKCIEK-GMAVIPASEIDKEAFMEKAKQAYKNLG 306 (327)
T ss_dssp HHHHHHHHHHHT-TCEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-CCEEEeCChhhHHHHHHHHHHHHHHHh
Confidence 344566777665 887 77788888875 4556677774
No 29
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=49.15 E-value=1.3e+02 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCCCChHH---HHHHHHHHHhhHHHHHHHH
Q 031612 30 VQYKLEKEFQQIYPDNANPMK---LVSRIKKVQEDLPILKEQC 69 (156)
Q Consensus 30 Iq~RLE~Ef~~~~pd~aNPv~---Ll~rL~~Iksr~~aL~~q~ 69 (156)
.|-|-..|+...+...|||-. |+.+...+|+|+..|....
T Consensus 179 ~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~ 221 (373)
T 3hhm_B 179 TQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSR 221 (373)
T ss_dssp HHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444555556666777763 4444455555555544333
No 30
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=46.94 E-value=14 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH--------HHHHHHHhhc
Q 031612 81 DKASAILVRNR--------NLVQRMQVSL 101 (156)
Q Consensus 81 d~ir~~L~~t~--------~liQ~LQ~~t 101 (156)
|.|+++|...+ .++||||+--
T Consensus 32 d~Ie~lL~n~l~n~~~A~~~~LqRLQKGW 60 (64)
T 2lnz_A 32 DDIEALLKNNFENDQAAVRQVMERLQKGW 60 (64)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhhh
Confidence 56777777666 7899999843
No 31
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=46.54 E-value=40 Score=27.45 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHhhc-CCC--CCChhhHHHHH-hHHHHHHHHHHhhc
Q 031612 91 RNLVQRMQVSL-DIP--VANESEDASFA-NFKQVIDEWTVQVR 129 (156)
Q Consensus 91 ~~liQ~LQ~~t-dle--plteeE~~a~~-~f~~~I~ewt~~~~ 129 (156)
-..+++|.+.- |++ .+|++|.++|. ....+.++|...++
T Consensus 265 ~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~~~~~~~~g 307 (326)
T 3fxb_A 265 DTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVEAKFIEMTG 307 (326)
T ss_dssp TTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34577788765 887 78999998887 45668899987763
No 32
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=46.24 E-value=84 Score=24.80 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHHHHHhh
Q 031612 91 RNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDEWTVQV 128 (156)
Q Consensus 91 ~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~ewt~~~ 128 (156)
-..++.|++ .|++ .+++++.++|. ....+.++|....
T Consensus 249 ~~~~~~l~~-~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 288 (301)
T 2pfy_A 249 RELTDTLAR-NGMSVEPLPPQLAKELQAIGATMVSDWSKKA 288 (301)
T ss_dssp HHHHHHHHH-TTCEEEECCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-CCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667755 4887 67888888876 4556778887654
No 33
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.12 E-value=46 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 46 ANPMKLVSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 46 aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
++|-.|.+++.++++++..|..+++.+..+
T Consensus 25 ~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 25 VEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999888888777654
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=45.90 E-value=62 Score=21.38 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELL---AAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~---aeKqel~d~ir~~L~~t~~liQ 95 (156)
+.|..|.+.+..|..-|.+++ .+|.+++|+|-..+..+..-++
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 356777777777777777754 5799999999888876655443
No 35
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=44.54 E-value=63 Score=21.02 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCREL---LAAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l---~aeKqel~d~ir~~L~~t~~liQ 95 (156)
+.+..|.+.+..|..-|+++ -.+|.+++|+|-..+..+..=++
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777765 46799999999998877665554
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.00 E-value=25 Score=23.99 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031612 62 LPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 62 ~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~td 102 (156)
++++.+.+.+++..|.+.|+.+...|..--..|++|+...+
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666667777766666666666666665443
No 37
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=43.68 E-value=82 Score=22.13 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQ-------CRELLAAKQDLIDKASAILVRNRNLV 94 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q-------~~~l~aeKqel~d~ir~~L~~t~~li 94 (156)
-+++.||++|+..+..+... |.+|+++ +.+++..|++.+..|
T Consensus 14 ~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~Q----laAvr~Al~~~~~~i 62 (94)
T 3aai_A 14 EEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQ----LKAVEGALDRVGEMV 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHH----HHHHHHHHHHHHHHH
Confidence 36889999999988888754 5555543 445666666555444
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.54 E-value=1.4e+02 Score=32.93 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA---SAILVRNRNLV 94 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i---r~~L~~t~~li 94 (156)
+-+.|+.|.++++.|++++++...+|+++.+.+ ...|.....||
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777788888888777777665543 34444444443
No 39
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=43.44 E-value=1e+02 Score=23.10 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
..+..+++.|-.+|+.|...=..-..+.+...+....+|.+.+.|=+.+..
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~e 55 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQ 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999998888888999999999999999998777555443
No 40
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=43.24 E-value=65 Score=20.83 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELL---AAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~---aeKqel~d~ir~~L~~t~~liQ 95 (156)
+.|..|.+.+..|..-|++++ .+|.+++|+|-..+..+..=++
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 57 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356677777777777777754 5799999999988877665544
No 41
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=42.65 E-value=1.2e+02 Score=25.64 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=24.6
Q ss_pred CCCCCC--hhhHHHHHhHHHHHHHHHHhhcc
Q 031612 102 DIPVAN--ESEDASFANFKQVIDEWTVQVRS 130 (156)
Q Consensus 102 dleplt--eeE~~a~~~f~~~I~ewt~~~~~ 130 (156)
-+|..+ +++...|.+|++.+..+--.||.
T Consensus 216 Klp~~~~~~~~~~~Y~~Flk~ve~Fl~~lrk 246 (270)
T 3iee_A 216 KLPVVNGHEGEMKSYQAFLSQVETFIKQVKK 246 (270)
T ss_dssp TSCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366444 67999999999999999999985
No 42
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=42.54 E-value=64 Score=27.24 Aligned_cols=54 Identities=11% Similarity=0.318 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCCC--hhhHHHHHhHHHHHHHHHHhhcccc-ccccccCChhhHHHH
Q 031612 91 RNLVQRMQVSLDIPVAN--ESEDASFANFKQVIDEWTVQVRSRT-RDEDHDSNSEDINKL 147 (156)
Q Consensus 91 ~~liQ~LQ~~tdleplt--eeE~~a~~~f~~~I~ewt~~~~~~~-~~~~~~~~~~d~n~~ 147 (156)
+++-++|-..--+||.+ ++|...|.+|++.+..+-..||..- .+.. +..|.|.+
T Consensus 197 ~el~~qLeaa~kLp~~~~~~~e~~~y~~flk~~e~f~~~lrk~k~~g~y---S~~dy~~l 253 (264)
T 3rh3_A 197 AELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFMNDMQKARSKGAY---SDKEYQAM 253 (264)
T ss_dssp HHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHH
Confidence 55666777777789666 8999999999999999999997522 2233 44566654
No 43
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=42.15 E-value=94 Score=24.01 Aligned_cols=98 Identities=5% Similarity=-0.058 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHH----------HHHHHh---CCCCC-Ch-HHHHHHHHHHHhhHHHHHHHHHHHHH--H--
Q 031612 15 GLVNLLTKSNHELTMVQYKLE----------KEFQQI---YPDNA-NP-MKLVSRIKKVQEDLPILKEQCRELLA--A-- 75 (156)
Q Consensus 15 ~Le~~FqKAesDLdyIq~RLE----------~Ef~~~---~pd~a-NP-v~Ll~rL~~Iksr~~aL~~q~~~l~a--e-- 75 (156)
.++.++..+..-+|-|--|+- .||... .|+.. +. ..--.-|+.|-+.+.++...++++.. .
T Consensus 60 ~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~i~e~~~~~~~~~~e~l~~L~~d~~~~~~~~r~~i~~A~e~ 139 (182)
T 1zs3_A 60 YLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKE 139 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455666677777888888885 366666 23322 21 13346677888888888888888653 2
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 031612 76 ----KQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDAS 113 (156)
Q Consensus 76 ----Kqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a 113 (156)
=.+++..+-+.+.++.=|++........+ ++||++.-
T Consensus 140 ~D~~Tadll~~~~~~~EK~~WmL~a~L~~~~~~-~~e~~~~~ 180 (182)
T 1zs3_A 140 EKFALAAGVVELYGYNLQVIRNLAGDLGKSVAD-FHDEDEDN 180 (182)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT-C-------
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHhccCccc-cccccccc
Confidence 23677777788888888888877655555 77777644
No 44
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=40.65 E-value=86 Score=24.20 Aligned_cols=13 Identities=0% Similarity=0.018 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhCC
Q 031612 28 TMVQYKLEKEFQQIYP 43 (156)
Q Consensus 28 dyIq~RLE~Ef~~~~p 43 (156)
|||+|||.. ..|+
T Consensus 19 DYI~yrL~~---~g~~ 31 (175)
T 1ohu_A 19 DYFTHRIRQ---NGME 31 (175)
T ss_dssp HHHHHHHHH---TTCC
T ss_pred HHHHHHHcc---CCCC
Confidence 999999974 4554
No 45
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=40.58 E-value=73 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHHHH-hhcCCC--CCChhhHHHHH-hHHHHHHHHHHhh
Q 031612 90 NRNLVQRMQ-VSLDIP--VANESEDASFA-NFKQVIDEWTVQV 128 (156)
Q Consensus 90 t~~liQ~LQ-~~tdle--plteeE~~a~~-~f~~~I~ewt~~~ 128 (156)
+-..++.|. +..|++ .+|++|.++|. ....+.++|...+
T Consensus 250 ~~~~~~~l~~~~~Gv~v~~~~~~~~~~~~~~~~~v~~~~~~~~ 292 (316)
T 2vpn_A 250 SEESLEKIKAASDEVTVTRLNDEQIQAFKERAPQVEEKFIEMT 292 (316)
T ss_dssp HHHHHHHHHHHCTTCEEEECCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCEEEeCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677774 556888 68888888886 5667888887653
No 46
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=40.14 E-value=1.1e+02 Score=22.70 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=1.8
Q ss_pred CCCCCccchhh
Q 031612 1 MGDHNFQHNHQ 11 (156)
Q Consensus 1 ~~~~~~~~~~~ 11 (156)
||-|..++.|.
T Consensus 1 ~~~~~~~~~~~ 11 (218)
T 3fb2_A 1 MGHHHHHHSHD 11 (218)
T ss_dssp -------CCHH
T ss_pred CCCcccccccc
Confidence 67766555443
No 47
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=39.75 E-value=1e+02 Score=28.23 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFA 115 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~ 115 (156)
.=..++.+|.-=|..|..+.+.+++++..=.++.+..-.....=.+....+-+..++|--|+||+++..
T Consensus 369 AL~sMVanLTiGKkkY~~~e~~m~~i~~~~~~l~~~Ll~LiDeDaeAF~~vm~AykLPK~TeEEK~~R~ 437 (541)
T 1tt9_A 369 ALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACLGAIKLPKNTPEERDRRT 437 (541)
T ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 334556677766788888888888888888888888887777888888889999999999999987765
No 48
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=38.34 E-value=38 Score=30.47 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHHhCCCCC-ChHHH
Q 031612 9 NHQAIDGLVNLLTKSNHELTMVQYKLEK-----------EFQQIYPDNA-NPMKL 51 (156)
Q Consensus 9 ~~~aVd~Le~~FqKAesDLdyIq~RLE~-----------Ef~~~~pd~a-NPv~L 51 (156)
....++.|...+...-..+.-.+++|-. +|...||++. ||--+
T Consensus 262 ~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~Fi~~f~g~e~~~~w~ 316 (613)
T 3iyd_F 262 VPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWF 316 (613)
T ss_dssp CHHHHHHHTHHHHTTTHHHHHHHHHHHHTTTTTTTCCGGGTTTTTTTCCSSTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCCHHHH
Confidence 4556788888888888888888887754 7889999985 76544
No 49
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=38.31 E-value=1.3e+02 Score=24.33 Aligned_cols=37 Identities=8% Similarity=-0.012 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHHHHHh
Q 031612 90 NRNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDEWTVQ 127 (156)
Q Consensus 90 t~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~ewt~~ 127 (156)
+-..++.|.+ .|++ .+++++.++|. ....+.++|...
T Consensus 284 ~~~~~~~l~~-~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~ 323 (365)
T 2hzl_A 284 NPTAIKSLVA-QGTQLRPFSPEILQACFEAANEVYAEMEAS 323 (365)
T ss_dssp HHHHHHHHHH-TTCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-CCCEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3456667765 5887 67777777775 455677777653
No 50
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=38.15 E-value=1.3e+02 Score=24.26 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHH-HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHhhcCCCC
Q 031612 29 MVQYKLEKEFQQIYPDNANPMKLVSRIKK-VQEDLPILKEQCRELLAA-KQDLIDKASAILVRNRNLVQR-MQVSLDIPV 105 (156)
Q Consensus 29 yIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~-Iksr~~aL~~q~~~l~ae-Kqel~d~ir~~L~~t~~liQ~-LQ~~tdlep 105 (156)
.|..+|-........=...+-.+-+.|.. ++..+.-=.++++..+.+ ..-+.+..+..|...+. +++ +.....+|+
T Consensus 61 LI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~~~~~~~~~~~~~~L~~~~g~t~~~~~~~lr~~l~-~~~lv~~~v~v~~ 139 (325)
T 3nrk_A 61 LIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIK-KGQLLQLKIAVPP 139 (325)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCSCHHHHGGGHHHHHH-HHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHccCCCCC
Confidence 34455555444555445567777776666 665542223556666666 33333334433333322 222 455666777
Q ss_pred CChhhHHHHHhHHHHHHHHH
Q 031612 106 ANESEDASFANFKQVIDEWT 125 (156)
Q Consensus 106 lteeE~~a~~~f~~~I~ewt 125 (156)
+|++|=.+| |....+...
T Consensus 140 Ptd~ei~~y--y~~~~~~~~ 157 (325)
T 3nrk_A 140 PNEQEIRSW--YNQNKDKVG 157 (325)
T ss_dssp CCHHHHHHH--HHHCHHHHC
T ss_pred CCHHHHHHH--HHHhhhhcC
Confidence 888776666 444444443
No 51
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=37.94 E-value=1.1e+02 Score=22.76 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcC
Q 031612 50 KLVSRIKKVQEDLPILKEQCR------ELLAAKQDLIDKASAILVRNRNLV--QRMQVSLD 102 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~------~l~aeKqel~d~ir~~L~~t~~li--Q~LQ~~td 102 (156)
+++.||++|+..+..+...++ +|+++ +..+|..|++.+..| .+|.....
T Consensus 11 ~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~Q----laAVrsAL~~~~~~ILe~HL~~Cv~ 67 (119)
T 2hh7_A 11 AALNRLKTVRGHLDGIVRMLESDAYCVDVMKQ----ISAVQSSLERANRVMLHNHLETCFS 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999988654 46554 456666666665554 45555443
No 52
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=37.80 E-value=1.7e+02 Score=24.06 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCC-hhh--HHHHHhHHHHHHHHHH
Q 031612 53 SRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI-PVAN-ESE--DASFANFKQVIDEWTV 126 (156)
Q Consensus 53 ~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdl-eplt-eeE--~~a~~~f~~~I~ewt~ 126 (156)
..|+.+-.++..|...++.|...=+.++++.+..-.+...+...|....-- +|++ +++ -.++..|...+.|+..
T Consensus 21 ~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~ 98 (385)
T 2q13_A 21 SLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS 98 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777666677776666666667777777764431 2222 222 1457778888888743
No 53
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=37.65 E-value=1.3e+02 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=18.8
Q ss_pred CCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 031612 3 DHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEF 38 (156)
Q Consensus 3 ~~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef 38 (156)
|++-+...+-+..=+.++. +||.+||..+-
T Consensus 3 ~~~~~~~~~i~~~~~~L~~------dYi~~rl~~~g 32 (171)
T 2ims_A 3 ALPSASEEQVAQDTEEVFR------SYVFYRHQQEQ 32 (171)
T ss_dssp -CCCCCHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH------HHHHHHHhhhc
Confidence 3444444555555555554 99999999764
No 54
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=37.28 E-value=1.1e+02 Score=23.49 Aligned_cols=21 Identities=10% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQC 69 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~ 69 (156)
-+|+.||++|+..+..+...+
T Consensus 52 k~ll~RLkRIeGQvrGI~rMI 72 (136)
T 4adz_A 52 AEHLKRLRRIEGQIRGLQRMV 72 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665543
No 55
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=36.85 E-value=1.2e+02 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 45 NANPMKLVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 45 ~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
..||..|..-=+.|-..|..|+.+++--++
T Consensus 40 ~~~p~eL~~la~~lt~~Y~~La~~~~~A~~ 69 (137)
T 2b0h_A 40 NTSPEELGPLANQLTSDYGRLASQAKPAAV 69 (137)
T ss_dssp TTCSSTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888888888888888888876544
No 56
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.53 E-value=1.1e+02 Score=21.63 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
.|-.|...+..++.+...|..+...|-.+..+... +.+.|..|....|.+
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~--------~~e~l~~l~~~~~~~ 51 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEI--------LEKTLSDIQGKDGSE 51 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHTTCTTCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcccCCCCe
Confidence 45567777777777777777777777666655443 344555565433433
No 57
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=36.35 E-value=97 Score=20.81 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=38.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 031612 21 TKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELL---AAKQDLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 21 qKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~---aeKqel~d~ir~~L~~t~~liQ 95 (156)
+.|...|.+|+.|-+ .|.+|...+..|..-|++++ .+|.+++|+|-..+..+..=++
T Consensus 7 ~~~~~~l~~i~eR~~------------------ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 66 (83)
T 1sfc_B 7 SISKQALSEIETRHS------------------EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 66 (83)
T ss_dssp --CCCHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345566666666643 46677777777777777754 5799999999888776554443
No 58
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=36.15 E-value=1e+02 Score=26.83 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCR-ELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~-~l~aeKqel~d~ir~~L~~ 89 (156)
..+..+.-...-+...|.+-.--|+.||+.++|... ..-+..|+.||.++..|.++|. +++.-++.--...+-.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~sLp~~v--~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeK 93 (359)
T 3fs3_A 16 KEISSLLESIKIGKTSLKYRCFYLYDDKMTDLTEEQ--KETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDK 93 (359)
T ss_dssp -----------------------------CCSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhccccchhhhhhhCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444555666777777778899999988631 1236788888999999988873 4444333333333333344
Q ss_pred HHHHHH
Q 031612 90 NRNLVQ 95 (156)
Q Consensus 90 t~~liQ 95 (156)
-..+|.
T Consensus 94 R~eII~ 99 (359)
T 3fs3_A 94 RREALV 99 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444443
No 59
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=36.10 E-value=53 Score=24.41 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=30.1
Q ss_pred hCCCCCChHHHHHHHHHHHhhHHH-----HHHHHHH--HHH--HHHHHHHHHHHHHHHHH
Q 031612 41 IYPDNANPMKLVSRIKKVQEDLPI-----LKEQCRE--LLA--AKQDLIDKASAILVRNR 91 (156)
Q Consensus 41 ~~pd~aNPv~Ll~rL~~Iksr~~a-----L~~q~~~--l~a--eKqel~d~ir~~L~~t~ 91 (156)
-+|++.-+.-+=.++..+...+.. |++-|+. |.. -|+||+++|..-|.+..
T Consensus 16 ~~p~~~~s~~~~~e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 16 PGPDREPTNELRNEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCccccCCCCchhHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 567775444344666655554443 4444443 122 48999999998876644
No 60
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=35.99 E-value=96 Score=20.66 Aligned_cols=52 Identities=15% Similarity=-0.011 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhh
Q 031612 69 CRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 69 ~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~ 128 (156)
++..+..=....+.|+..|..-...++.|+.. ++ -.+..+|.....+|..-.
T Consensus 5 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~-----W~---G~Aa~af~~~~~~w~~~a 56 (94)
T 4i0x_A 5 VGALSKFAASLADQMRAGSNSLDRDVQSLFGV-----WK---GSAADAYRSGWDEMQDGA 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-----CC---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cc---hHHHHHHHHHHHHHHHHH
Confidence 33444444555666777777767777777732 43 347778888888997654
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.33 E-value=87 Score=19.97 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=25.9
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 37 EFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 37 Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i 83 (156)
||.+.|=+.+-|- ...+.++|.+...|+.++..|..+=+++..++
T Consensus 5 efIk~~LG~~~p~--~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 5 DFLKHHLGAATPE--NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -----------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665532222 24678899999999999999988877776543
No 62
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.17 E-value=1.4e+02 Score=22.24 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
..+..+++.|..+|+.|...=..-+.+.+...+..+..|.+...|-..+..+.
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~ 57 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRA 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999888888888888889999999988887766655543
No 63
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.08 E-value=1.1e+02 Score=25.02 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS 100 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~ 100 (156)
-|..|++++|++...|...++++-.+ .++.+++|..-|..+.++...
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~e----~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRDD----RDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999998888887664 345666666666655555544
No 64
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=34.96 E-value=98 Score=20.49 Aligned_cols=80 Identities=8% Similarity=0.089 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CCChhhHHHHHhHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELL--AAKQDLIDKASAILVRNRNLVQRMQVSLD---IP-VANESEDASFANFKQVIDE 123 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~--aeKqel~d~ir~~L~~t~~liQ~LQ~~td---le-plteeE~~a~~~f~~~I~e 123 (156)
.+++++.+...++...-..++.+. .+-+.+.+.+......-...+.++-.... .+ ....+-.+.+..|...+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 143 (164)
T 2lig_A 64 DLLQNAKTTLAQAAAHYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGN 143 (164)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhCchHHHHHHHHHHHHH
Confidence 566666666666666555555542 23455666665555444433333332221 11 1111223344556666666
Q ss_pred HHHhhc
Q 031612 124 WTVQVR 129 (156)
Q Consensus 124 wt~~~~ 129 (156)
|.....
T Consensus 144 l~~~~~ 149 (164)
T 2lig_A 144 YARVSE 149 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 65
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.54 E-value=1.2e+02 Score=21.40 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCCccc--hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 2 GDHNFQH--NHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 2 ~~~~~~~--~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
|.|++|. ...-|++.+...+-=.+-++.+++-|.-.. .|....|-.|..-|+++-+-.-+|++++..|=++=+.+
T Consensus 1 ~~~~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s---~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 1 GSHMAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQA---NNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455553 355666666666666667777777766543 34445899999999999988889999888876654433
No 66
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.88 E-value=2.4e+02 Score=24.68 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCC-----CChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 33 KLEKEFQQIYPDN-----ANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 33 RLE~Ef~~~~pd~-----aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
.|-.-++..+... -|+-...+..+++.+++..|.. +...+...+..++..|..+..-|++|+.
T Consensus 59 ~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~----~~~~~~~~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 59 YLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN----TILAHENTIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555555532 1565668888888888877744 4444555556666666555555555543
No 67
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.52 E-value=1.2e+02 Score=20.98 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELL 73 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~ 73 (156)
..+.++..|+..+..|...+++|-
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~ 32 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVK 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 68
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=33.49 E-value=1.6e+02 Score=22.47 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHH
Q 031612 4 HNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQ 68 (156)
Q Consensus 4 ~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q 68 (156)
|.-|.|+..-+++...+.+++-=+.-|++.+|.+ ..-..+|..|+++++=+..+...
T Consensus 42 ~~~~g~~~~Kk~ll~RLkRIeGQvrGI~rMIEed--------r~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 42 RGVHGYHKQKAEHLKRLRRIEGQIRGLQRMVDED--------VYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888999999999999999999999864 45778999999999877665443
No 69
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=33.45 E-value=1.9e+02 Score=23.38 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHH
Q 031612 14 DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 14 d~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
|-+...=+=.++=++|--+|++.|=...-|....| +.|+..++..++.-+++|..+
T Consensus 103 DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~~~~---l~rve~~q~~~~~ak~kf~kL 158 (224)
T 1i4d_A 103 DTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT---RGRLESAQATFQAHRDKYEKL 158 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHhhHHHhhcccccccc---hhhHHHHHHHHHHHHHHHHHH
Confidence 33333334455668899999988877766755555 445556666666666666654
No 70
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=33.08 E-value=1.7e+02 Score=22.64 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
...+..+..-|.++.+|++-+.+|.+.|.....-- -+..+-.++--..+-++--+..-.+....+...+.-
T Consensus 32 ~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~---------a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m 102 (177)
T 3a6m_A 32 EEELKGLKDKYLRLLADFDNYRKRMEEELKARERE---------GVLKALRALLPVLDDLDRALEFAEASPESIRQGVRA 102 (177)
T ss_dssp GGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHH
Confidence 45566788889999999999999999998764321 122222222222233332222111114556666666
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 031612 90 NRNLVQRMQVSLDIPVAN 107 (156)
Q Consensus 90 t~~liQ~LQ~~tdleplt 107 (156)
++..+...-...|++++.
T Consensus 103 ~~~~l~~~L~k~Gv~~i~ 120 (177)
T 3a6m_A 103 IRDGFFRILAGLGVEEVP 120 (177)
T ss_dssp HHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHCCCEEeC
Confidence 777777777888988553
No 71
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.01 E-value=1.6e+02 Score=22.33 Aligned_cols=66 Identities=12% Similarity=0.262 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 23 SNHELTMVQYKLEKEFQQIYPDNA-NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 23 AesDLdyIq~RLE~Ef~~~~pd~a-NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
.-.||-.-.+..|+ +..+.|+.. .+-.=++||++++.+....-.+.++...++.++...|+..|..
T Consensus 62 la~dli~kakqIe~-LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 62 LSTDIILKTRQINK-LIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554 567889765 7888899999999999999999999999999999999888754
No 72
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=32.95 E-value=1.1e+02 Score=20.53 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHhhcCCCCCChhhHHHHH-----hHHHHHHHHHHhhccccccccccCChhhHHHHH
Q 031612 93 LVQRMQVSLDIPVANESEDASFA-----NFKQVIDEWTVQVRSRTRDEDHDSNSEDINKLL 148 (156)
Q Consensus 93 liQ~LQ~~tdleplteeE~~a~~-----~f~~~I~ewt~~~~~~~~~~~~~~~~~d~n~~l 148 (156)
-|..+-++.|++.++++=-.+.+ -+.+|+.+=..-.++.-+.-- .-+|+|.+|
T Consensus 11 ~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~L---t~~DI~~Al 68 (70)
T 1taf_B 11 SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKL---SVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSB---CHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee---cHHHHHHHH
Confidence 46678889999999865433333 344555543333333322122 668898876
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=32.86 E-value=1.3e+02 Score=23.67 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 16 LVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASA 85 (156)
Q Consensus 16 Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~ 85 (156)
|...--.-+.|+.-+|-.|+.|-...--++.=-.-|=.|+..++.++..++.+...+.++++.+-++|-.
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334456677777777777654432221112233466677777777777777777777777777643
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.32 E-value=1.4e+02 Score=21.55 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCCccchhhhHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhC-----CC-C-------CChHHHHHHHHHHHhhHHHHH
Q 031612 3 DHNFQHNHQAIDGLVNLLTKSNH---ELTMVQYKLEKEFQQIY-----PD-N-------ANPMKLVSRIKKVQEDLPILK 66 (156)
Q Consensus 3 ~~~~~~~~~aVd~Le~~FqKAes---DLdyIq~RLE~Ef~~~~-----pd-~-------aNPv~Ll~rL~~Iksr~~aL~ 66 (156)
|.+||-....+++|..-...-+- .|----..||-++...+ -. + -||.....+= .+..+..|.
T Consensus 4 ~~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq 81 (100)
T 1go4_E 4 EQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQ 81 (100)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHH
Confidence 55677677777777755444333 33333344555666522 22 1 1999886432 245566666
Q ss_pred HHHHHH
Q 031612 67 EQCREL 72 (156)
Q Consensus 67 ~q~~~l 72 (156)
+.|+.|
T Consensus 82 ~E~erL 87 (100)
T 1go4_E 82 AECERL 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 75
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=32.11 E-value=1.4e+02 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCR 70 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~ 70 (156)
.|-.+-+++..|..++..|+..+.
T Consensus 73 ~~~~i~~~~~~l~~~w~~L~~~~~ 96 (213)
T 1cun_A 73 GKEEIQQRLAQFVDHWKELKQLAA 96 (213)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666554
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.10 E-value=41 Score=31.18 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 51 LVSRIK-KVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 51 Ll~rL~-~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
...+++ -|..+++.|+..+...+ ..+..+|..|...+.=||+|....++.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQl----snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKV----QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 66666667766666555 345666777777777788887766643
No 77
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.65 E-value=79 Score=19.07 Aligned_cols=24 Identities=4% Similarity=0.158 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 60 EDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 60 sr~~aL~~q~~~l~aeKqel~d~i 83 (156)
+||.-|.+.+++|+.+++++-+-+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHH
Confidence 378889999999999998876544
No 78
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=29.46 E-value=1.6e+02 Score=22.86 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHH----HHHHHHHHHH
Q 031612 46 ANPMKLVSRIKKVQEDLPILKEQCRELLAA--KQDLIDKASAIL----VRNRNLVQRM 97 (156)
Q Consensus 46 aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae--Kqel~d~ir~~L----~~t~~liQ~L 97 (156)
.||..|..-=+.|-..|..|+.+++--.+. =.+..++||... .++-.|||.-
T Consensus 69 ~~p~eL~~la~~it~~y~~La~~~~~A~~t~~~~~i~~~Ik~~Vq~LG~sc~~lV~~a 126 (165)
T 2kvp_A 69 TSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKA 126 (165)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 399999999999999999999999886654 334444444433 4456666643
No 79
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.85 E-value=2.4e+02 Score=23.16 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCChh--hHHHHHhHHHHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVS----LDIPVANES--EDASFANFKQVIDEWT 125 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~----tdlepltee--E~~a~~~f~~~I~ewt 125 (156)
=.|+..+.+++..|.++++++..+.+..-.+|+..=.+.+.+--..... .|+| =++| ++.+=+=|+.||.|--
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVP-Egee~~~kgaenlf~eII~Enf 83 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVP-ESDVENGTKLENTLQDIIQENF 83 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCC-CCTTCCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecC-CCcccccccHHHHHHHHHHHhC
Confidence 3567778889999999999998887777666664433333333333221 2444 4444 5556667999999986
Q ss_pred Hhhc
Q 031612 126 VQVR 129 (156)
Q Consensus 126 ~~~~ 129 (156)
-.|+
T Consensus 84 PnL~ 87 (233)
T 2yko_A 84 PNLA 87 (233)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 5554
No 80
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=28.77 E-value=1.9e+02 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHhHHHHHHH
Q 031612 93 LVQRMQVSLDIPVANESEDASFANFKQVIDE 123 (156)
Q Consensus 93 liQ~LQ~~tdleplteeE~~a~~~f~~~I~e 123 (156)
..+.|..+.++.|- .++..|.++.+|
T Consensus 73 ~f~~~~~~L~it~~-----~a~~~F~~Va~e 98 (169)
T 4aq3_A 73 DFAEMSSQLHLTPF-----TARGRFATVVEE 98 (169)
T ss_dssp HHHHHHHHCCCCTT-----THHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-----cHHHHHHHHHHH
Confidence 45556666665432 477788887765
No 81
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=28.41 E-value=1.8e+02 Score=21.53 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQ---DLIDKASAILVRNRNLVQRMQVSLDIPVANESED 111 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKq---el~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~ 111 (156)
...+++.+++.++...-. +.+...+++ ++++.|...+....+ ..+-..||.|.|.++--
T Consensus 70 e~~~el~~l~~~l~~np~-V~~y~~Ae~~l~~LL~~I~~iI~~~I~--~~i~v~tg~p~~~~~~~ 131 (151)
T 2pih_A 70 QVEAKIDALQEELEEIPV-IQEFRDSQMEVNDLLQLVAHTISNQVT--NEIITSTGGDLLKGETG 131 (151)
T ss_dssp HHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTCCC-------
T ss_pred HHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccCCCCCCcccccCC
Confidence 334445555544443322 222333333 556666666655433 56788899998875543
No 82
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.34 E-value=1.6e+02 Score=20.79 Aligned_cols=46 Identities=28% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 27 LTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 27 LdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
+--.|..|+-||+..- .+-++|+++++...++..++++--..-+++
T Consensus 12 ~leLQSALeaEIqAKQ-------~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQ-------SLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888887652 566777777777777766665544444444
No 83
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=28.29 E-value=1.7e+02 Score=21.25 Aligned_cols=23 Identities=0% Similarity=0.014 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
.|+++.+.++.++.+....+..|
T Consensus 144 ~llkkh~~f~~~l~~~~~~i~~l 166 (214)
T 1s35_A 144 AGIRKFEDFLGSMENNRDKVLSP 166 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555554444444443
No 84
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.06 E-value=94 Score=18.62 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031612 61 DLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 61 r~~aL~~q~~~l~aeKqel~d~i 83 (156)
||.-|.+.+++|+.+++++-+-+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHH
Confidence 56778899999999998876544
No 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.91 E-value=1.3e+02 Score=21.78 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-CCChhhHHHHHhHHHHHHHHHHhhc
Q 031612 67 EQCRELLAAKQDLIDKASAILVRNR---NLVQRMQVSLDIP-VANESEDASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 67 ~q~~~l~aeKqel~d~ir~~L~~t~---~liQ~LQ~~tdle-plteeE~~a~~~f~~~I~ewt~~~~ 129 (156)
..+++.++.|+..||.+...+.... +-|+-|+++.++= ---..|.++...+++=+.+-..+|+
T Consensus 12 ~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 12 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567888999999999998877665 6777788887754 2224566666666665555555553
No 86
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.79 E-value=98 Score=18.25 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQ 68 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q 68 (156)
.|-++|.++|.++.+|+-.
T Consensus 6 alkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666543
No 87
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=27.57 E-value=2.3e+02 Score=22.37 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=56.1
Q ss_pred HHHHHHHhh---hhhHHHHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 15 GLVNLLTKS---NHELTMVQYKLEKEFQQIYP--DNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 15 ~Le~~FqKA---esDLdyIq~RLE~Ef~~~~p--d~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
.|--.|--| ..|-|||.+=|+ +.+.| ...||-++++.|..|=.++..-.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~dp~~~~v~~~L~~iGDEle~r~e---------------------- 77 (179)
T 3qbr_A 23 TLCHSFLLASANKQDTDYLTDLLD---NTNIDLTCVPNGQEIIHSLLQLVGDFNQRFS---------------------- 77 (179)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHH---HHTCCCCCCTTHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHhcccccchHHHHHHc---CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh----------------------
Confidence 344445444 358899998886 35555 346999999888888777654211
Q ss_pred HHHHHHHHHhhcCCC---CCChhhHHHHHhHHHHHHH
Q 031612 90 NRNLVQRMQVSLDIP---VANESEDASFANFKQVIDE 123 (156)
Q Consensus 90 t~~liQ~LQ~~tdle---plteeE~~a~~~f~~~I~e 123 (156)
...|++.|+.+.|+. ++| +++|+..|.++.+|
T Consensus 78 ~q~ml~~l~~ql~~~~~~~lt--~~tA~~~F~~Va~e 112 (179)
T 3qbr_A 78 QTHEIEPVAQSLGIDSDKPVD--KTALEIFYLEILNG 112 (179)
T ss_dssp HHCCSHHHHHHHTCSSSSCCC--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccccccCCC--chHHHHHHHHHHHH
Confidence 134677787777765 455 78899999999887
No 88
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.43 E-value=1.4e+02 Score=21.81 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
..+=+-++-++.|+..|..+.+.+-..-+++.+.+.........+.|.+|.
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888777776666666666665555555555
No 89
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=27.31 E-value=2.1e+02 Score=21.83 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=38.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031612 52 VSRIKKVQEDLPILKEQCRELL----------------AAKQDLIDKASAILVRNRNLVQRMQVSL 101 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l~----------------aeKqel~d~ir~~L~~t~~liQ~LQ~~t 101 (156)
.+-+++|+.++...-++|-.++ ...|.++++|+..|+.+=+++.++.+.+
T Consensus 58 ~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~ 123 (135)
T 1i6z_A 58 AEALCKLDRKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQET 123 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776655 4488999999999999999999988543
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.04 E-value=1.5e+02 Score=25.37 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh---CCCCCCh-HHHHHHHHHHHhhHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQI---YPDNANP-MKLVSRIKKVQEDLPILKEQCRELL 73 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~---~pd~aNP-v~Ll~rL~~Iksr~~aL~~q~~~l~ 73 (156)
+..+.+|+.-....+..+...+..++...... +.+-..+ ..+-+.+++++++.+.+....+...
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 529 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34556666555555555655555555443332 2233455 4455566777777776655555544
No 91
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=26.35 E-value=1.9e+02 Score=21.19 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031612 77 QDLIDKASAILVRNRNLVQRM 97 (156)
Q Consensus 77 qel~d~ir~~L~~t~~liQ~L 97 (156)
++.++.|...+.....++..|
T Consensus 76 ~~~l~~i~~~~~~l~~~i~~l 96 (268)
T 4ew8_A 76 RNHVAAVRAAATQLARSIDDV 96 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 92
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.28 E-value=40 Score=24.24 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 031612 45 NANPMKLVSRIKKVQEDLPILKEQCRELLAAKQ-DLIDKASAILVRNRNLVQ 95 (156)
Q Consensus 45 ~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKq-el~d~ir~~L~~t~~liQ 95 (156)
.+|+-+|-+=|..||.++.++.....-.-..+. +.=-+|..++.. |.+|+
T Consensus 6 ~~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~E-mq~Ir 56 (92)
T 3vp9_A 6 SNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAE-MQQIR 56 (92)
T ss_dssp -----------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH-HHHHH
Confidence 346778888899999999988777665555554 555555555554 55544
No 93
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.24 E-value=1.6e+02 Score=20.25 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCCCccchhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 031612 2 GDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEF 38 (156)
Q Consensus 2 ~~~~~~~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef 38 (156)
||++.|.+-..|+.+.....+-+.+++-|.. |-.++
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~-~~~~~ 38 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKR-KHSAI 38 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4555566667777777777777777766633 33344
No 94
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=26.08 E-value=2.6e+02 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHH-----------HHHHHHhCCCCC-ChHH
Q 031612 11 QAIDGLVNLLTKSNHELTMVQYKL-----------EKEFQQIYPDNA-NPMK 50 (156)
Q Consensus 11 ~aVd~Le~~FqKAesDLdyIq~RL-----------E~Ef~~~~pd~a-NPv~ 50 (156)
..++.|...+...-..+.-.++++ ..+|...||++. ||--
T Consensus 155 k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w 206 (339)
T 1sig_A 155 KQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTW 206 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHH
Confidence 345555555555555444444444 358999999885 7743
No 95
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=26.03 E-value=1.5e+02 Score=19.95 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
++-++|..|+.++.+-.+.|.+--....||--++-..|++ |++....|+.
T Consensus 14 ~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~-----QE~~rK~G~a 63 (65)
T 3t97_B 14 IISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIK-----QEIQRKSGYA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHhccC
Confidence 3456778888888888888777766666666666665554 7888887764
No 96
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=25.92 E-value=4.4e+02 Score=25.16 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHhCCCCCChHHHHHH------HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031612 38 FQQIYPDNANPMKLVSR------IKKVQEDLPILKEQCRELLAA---------KQDLIDKASAILVRNRNLVQRMQVSLD 102 (156)
Q Consensus 38 f~~~~pd~aNPv~Ll~r------L~~Iksr~~aL~~q~~~l~ae---------Kqel~d~ir~~L~~t~~liQ~LQ~~td 102 (156)
+...+.+..-|++.|.. .+.++.....+.++.+.+... -++.+..|+.+-..-..|..++-.++-
T Consensus 309 vsD~F~dt~~pL~~Li~Aa~~g~ee~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar 388 (832)
T 4igg_A 309 VSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAAL 388 (832)
T ss_dssp HHHHTSSSSHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33445555567766643 344445555555555444322 122333343333333333333332221
Q ss_pred CCCCChhhHHHHHhHHHHHHHHHHhhc
Q 031612 103 IPVANESEDASFANFKQVIDEWTVQVR 129 (156)
Q Consensus 103 leplteeE~~a~~~f~~~I~ewt~~~~ 129 (156)
+=-.-...+.|..+|....+.|..+|.
T Consensus 389 ~L~~~P~Sk~A~Enle~f~~~W~~~v~ 415 (832)
T 4igg_A 389 ALAAKPQSKLAQENMDLFKEQWEKQVR 415 (832)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 110012368999999999999999885
No 97
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.81 E-value=1.5e+02 Score=19.84 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLAAKQDLID 81 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d 81 (156)
.++.++..++.++..|..+.+.+-.++++.-+
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777666665443
No 98
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.61 E-value=1.7e+02 Score=20.39 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH----H----H-HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhhHHHHHh
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRE----L----L-AAKQDLIDKASAILVRNRNLVQRMQVS-LDIPVANESEDASFAN 116 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~----l----~-aeKqel~d~ir~~L~~t~~liQ~LQ~~-tdleplteeE~~a~~~ 116 (156)
||+..-+-+..--.+|..|++.+.. | . .+++..+..|...|....++|++|.-- .++| .+ .+ ..
T Consensus 9 ~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p-~s--~R---~~ 82 (102)
T 2qyw_A 9 ASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP-LT--FR---NP 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HH--HH---HH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HH--HH---HH
Confidence 7777655555555555555444432 2 2 567789999999999999999997543 3454 22 33 35
Q ss_pred HHHHHHHHHHhh
Q 031612 117 FKQVIDEWTVQV 128 (156)
Q Consensus 117 f~~~I~ewt~~~ 128 (156)
|+.=|.+|...|
T Consensus 83 ~~~klr~Yk~dL 94 (102)
T 2qyw_A 83 MMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 99
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=25.44 E-value=99 Score=22.97 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhhHHHHHHHH
Q 031612 46 ANPMKLVSRIKKVQEDLPILKEQC 69 (156)
Q Consensus 46 aNPv~Ll~rL~~Iksr~~aL~~q~ 69 (156)
.-+-.|.++|.++|-|=.+|+.++
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777766666544
No 100
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=25.19 E-value=1.1e+02 Score=18.64 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 60 EDLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 60 sr~~aL~~q~~~l~aeKqel~d~ir 84 (156)
.||.-|.+.+++|+..+.++-+.+.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHH
Confidence 3677888889999998888876554
No 101
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=25.15 E-value=1.4e+02 Score=22.34 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcC
Q 031612 91 RNLVQRMQVSLD 102 (156)
Q Consensus 91 ~~liQ~LQ~~td 102 (156)
+.++|+||..-.
T Consensus 95 ~~Lmq~mQ~~G~ 106 (126)
T 2wl8_A 95 LDLMQQLQDLGH 106 (126)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC
Confidence 456666665433
No 102
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.92 E-value=99 Score=18.62 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 60 EDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 60 sr~~aL~~q~~~l~aeKqel~d~i 83 (156)
.||.-|.+.+++|+.+++++-+-+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHH
Confidence 377889999999999998775543
No 103
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.77 E-value=43 Score=20.79 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.9
Q ss_pred HHHHHHhhHHHHH
Q 031612 54 RIKKVQEDLPILK 66 (156)
Q Consensus 54 rL~~Iksr~~aL~ 66 (156)
.|+++|+|+++|.
T Consensus 27 di~~MqsRLaALR 39 (40)
T 2xze_Q 27 ALEAMQSRLATLR 39 (40)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4778888888874
No 104
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.63 E-value=1.9e+02 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 50 KLVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 50 ~Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
+|-.+++.+++++..|..++.++.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777654
No 105
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=24.31 E-value=2.6e+02 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.387 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612 69 CRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFA 115 (156)
Q Consensus 69 ~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~ 115 (156)
.++|..-|++++ .+|+.|..++.++.+|.+ .+.+.++++.+.-|.
T Consensus 196 l~~i~~lrr~l~-~lrr~l~p~~~vl~~L~~-~~~~~~~~~~~~~l~ 240 (280)
T 4egw_A 196 MEKILGLRKTLV-YFHKSLIANRDVLVLLKR-KYLPITTKEDRENFE 240 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-SCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHhhHHHHHHHHHh-cCcccCCHHHHHHHH
Confidence 345566677766 789999999999999986 345556666655443
No 106
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=24.15 E-value=2.7e+02 Score=22.44 Aligned_cols=34 Identities=6% Similarity=0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCC--CCChhhHHHHH-hHHHHHHHHH
Q 031612 91 RNLVQRMQVSLDIP--VANESEDASFA-NFKQVIDEWT 125 (156)
Q Consensus 91 ~~liQ~LQ~~tdle--plteeE~~a~~-~f~~~I~ewt 125 (156)
-..++.|.+ .|++ .+|++|.++|. ....+.++|.
T Consensus 292 ~~~~~~l~~-~G~~v~~~~~~~~~~~~~~~~~v~~~~~ 328 (361)
T 2zzv_A 292 LEAWPKYRQ-AGVEVIRLSNEDVRKFRRLAIPIWFKWA 328 (361)
T ss_dssp HHHHHHHHH-TTCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 445666755 4877 67888887775 3455666664
No 107
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.04 E-value=3.3e+02 Score=23.78 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHH---HHhhhhhHHHHHHH---HHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 031612 13 IDGLVNL---LTKSNHELTMVQYK---LEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA 75 (156)
Q Consensus 13 Vd~Le~~---FqKAesDLdyIq~R---LE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~ae 75 (156)
||.+..+ ..+....++-++.+ +-.+|.+.-....+.-.|+++.+.|+++++.|.++..++-.+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 34444455544443 445555432333345567777777777777766666655433
No 108
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.90 E-value=1.5e+02 Score=19.20 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHHhh
Q 031612 77 QDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 77 qel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~~~ 128 (156)
+...+.|+..|..-...|..|+..-..+ +...|.....+|...+
T Consensus 21 ~~~~~~i~~~l~~L~~~~~~l~~~W~G~--------a~~aF~~~~~~~~~~~ 64 (98)
T 3gwk_C 21 TAGSQQVTEVLNLLTQEQAVIDENWDGS--------TFDSFEAQFNELSPKI 64 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBCSS--------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCcH--------HHHHHHHHHHHHHHHH
Confidence 3444455566666666777777654433 4445566666676655
No 109
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.86 E-value=1.8e+02 Score=19.82 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASA 85 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~ 85 (156)
|=+|+..|..++..|..+...+-.+-+++...++.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443
No 110
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=23.80 E-value=1.4e+02 Score=19.98 Aligned_cols=38 Identities=32% Similarity=0.381 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612 60 EDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP 104 (156)
Q Consensus 60 sr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle 104 (156)
.+...|-..+++++++|.+--+++|- ++.+|+.+.|++
T Consensus 18 akfkn~lqh~r~vaaaks~en~rlr~-------l~kqmcpsldvd 55 (63)
T 2c9l_Y 18 AKFKQLLQHYREVAAAKSSENDRLRL-------LLKQMCPSLDVD 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHH-------HHHHhCCccccc
Confidence 44556677788999999988888765 456688888865
No 111
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=23.57 E-value=64 Score=20.15 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=11.7
Q ss_pred HHHHHHHHHHH--------HHHHHHHh
Q 031612 81 DKASAILVRNR--------NLVQRMQV 99 (156)
Q Consensus 81 d~ir~~L~~t~--------~liQ~LQ~ 99 (156)
|.|++.|+..+ .+++|||+
T Consensus 9 d~Ie~lL~~~~~d~~~a~~~~L~RLqk 35 (41)
T 3vej_A 9 DDIEALLKNNFENDQAAVRQVMERLQK 35 (41)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 45666665543 67777776
No 112
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.15 E-value=2.1e+02 Score=20.58 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQD 78 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqe 78 (156)
..-.|++..+++++++.+-...++.|...=++
T Consensus 140 ~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~ 171 (213)
T 1cun_A 140 AIQGLLKKHEAFETDFTVHKDRVNDVCANGED 171 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777776666665555555444333
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.86 E-value=1.7e+02 Score=21.09 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=11.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 031612 55 IKKVQEDLPILKEQCRELLAAKQDL 79 (156)
Q Consensus 55 L~~Iksr~~aL~~q~~~l~aeKqel 79 (156)
+.++++++..|+..+.+..++.+++
T Consensus 20 ~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 20 IEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 114
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.79 E-value=2.3e+02 Score=20.82 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCChhhHHHHHhHHHHHHHHHHhh
Q 031612 54 RIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP-VANESEDASFANFKQVIDEWTVQV 128 (156)
Q Consensus 54 rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle-plteeE~~a~~~f~~~I~ewt~~~ 128 (156)
..++++....-|.+++......++++-+.....-...-.-|+.|+.++--. .+=.+=+-+|.-++..+.+--++|
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999998888888888888888765422 111233445666666655554444
No 115
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=22.59 E-value=2.9e+02 Score=21.92 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQC-RELLAAKQDLIDKASAILVRNRNLV 94 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~-~~l~aeKqel~d~ir~~L~~t~~li 94 (156)
.....++.|..||.++..|.++| ++++.-.+.--...+-.+.+-..+|
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII 75 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI 75 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 44677899999999999999888 4455544444444444555555555
No 116
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=22.51 E-value=1.9e+02 Score=19.85 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHHHhHHHHHHHHHH
Q 031612 77 QDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126 (156)
Q Consensus 77 qel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~~~f~~~I~ewt~ 126 (156)
++.++.+...+......++++.+. |+.+++|++.+..+....+.|..
T Consensus 68 ~~~~~~a~~~l~~~~~~~~~y~~~---~~~~~~e~~l~~~l~~~~~~~~~ 114 (176)
T 2d4u_A 68 AELMESASISLKQAEKNWADYEAL---PRDPRQSTAAAAEIKRNYDIYHN 114 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---CCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCCcccHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543 22233355555554444444433
No 117
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=21.91 E-value=2.5e+02 Score=20.82 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=9.9
Q ss_pred hHHHHHhHHHHHHH
Q 031612 110 EDASFANFKQVIDE 123 (156)
Q Consensus 110 E~~a~~~f~~~I~e 123 (156)
++.++..|.++.+|
T Consensus 69 ~~~a~~~f~~Va~e 82 (157)
T 2vof_A 69 IDTARIIFNQVMEK 82 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 56677777777765
No 118
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=21.89 E-value=4.7e+02 Score=24.10 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHH------HHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 031612 10 HQAIDGLVNLLTKSNHELTMVQYKLE------KEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKA 83 (156)
Q Consensus 10 ~~aVd~Le~~FqKAesDLdyIq~RLE------~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~i 83 (156)
...|..|..+-|..+.|+-+++..=| .++... . +. .+-..-+.++.+...|...+..|....+++++.+
T Consensus 8 ~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~-~-~~---~~~~~~~~~~~~~~~l~~~~~~l~~~R~~~~~~~ 82 (575)
T 1bf5_A 8 DSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR-E-HE---TNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKI 82 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-C-----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-h-hh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999998887655 223222 1 11 1112224455555556666677777777777777
Q ss_pred HHHHHHHHHH
Q 031612 84 SAILVRNRNL 93 (156)
Q Consensus 84 r~~L~~t~~l 93 (156)
...+.....+
T Consensus 83 ~~~~~~~~~l 92 (575)
T 1bf5_A 83 IELLNVTELT 92 (575)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666554444
No 119
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.86 E-value=2.6e+02 Score=21.14 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 031612 47 NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLI 80 (156)
Q Consensus 47 NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~ 80 (156)
.--.|++..++++.++.+-..+++.|...-++++
T Consensus 49 ~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~ 82 (250)
T 1quu_A 49 EVRALLRKHEAFESDLAAHQDRVEQIAAIAQELN 82 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345688888888888888888888877777776
No 120
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=21.84 E-value=4.3e+02 Score=25.49 Aligned_cols=91 Identities=18% Similarity=0.358 Sum_probs=52.7
Q ss_pred hCCCCCChHHHHHHHH-----------HHHhhHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHh
Q 031612 41 IYPDNANPMKLVSRIK-----------KVQEDLPILKEQCRELLA-------A---KQDLIDKASAILVRNRNLVQRMQV 99 (156)
Q Consensus 41 ~~pd~aNPv~Ll~rL~-----------~Iksr~~aL~~q~~~l~a-------e---Kqel~d~ir~~L~~t~~liQ~LQ~ 99 (156)
.|.+-..|++.|.+.. .+......+...|+.|.. - -++.+..|+.....-..++-+|..
T Consensus 598 ~f~d~~~~l~~L~eaa~~~~~~~~~~~~~~~~a~~~~~~~~~L~~~a~~~~~~~~~~~~~~~~i~~aa~~l~~~t~~lv~ 677 (1066)
T 1tr2_A 598 VFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVS 677 (1066)
T ss_dssp HTTCCSHHHHHHHHHHHSCTTCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhhHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555445555554333 233444555555555433 1 335666666665555555555655
Q ss_pred hcCCCCCChhhHHHHHhHHHHHHHHHHhhccc
Q 031612 100 SLDIPVANESEDASFANFKQVIDEWTVQVRSR 131 (156)
Q Consensus 100 ~tdleplteeE~~a~~~f~~~I~ewt~~~~~~ 131 (156)
.+.+-.....+..+..+|.....+|...+..-
T Consensus 678 aar~~~~~p~n~~Ak~~l~~~~~~~~~~v~~L 709 (1066)
T 1tr2_A 678 AARILLRNPGNQAAYEHFETMKNQWIDNVEKM 709 (1066)
T ss_dssp HHHHTTSSCSCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55533222346778889999999999988653
No 121
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.34 E-value=2.8e+02 Score=21.22 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhhHHHHHhHHHHHHHH
Q 031612 52 VSRIKKVQEDLPILKEQCREL-----LAA-KQDLIDKASAILVRNRNLVQRMQVSLDI-PVANESEDASFANFKQVIDEW 124 (156)
Q Consensus 52 l~rL~~Iksr~~aL~~q~~~l-----~ae-Kqel~d~ir~~L~~t~~liQ~LQ~~tdl-eplteeE~~a~~~f~~~I~ew 124 (156)
+..|..|+..+.-|.+.+... ... ..|++.-+..++......|++|-..++= +.+..+==.+-..+++++..|
T Consensus 59 ~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY 138 (158)
T 1naf_A 59 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLY 138 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHH
Confidence 344455555555555554432 111 5578888888888888888888776531 111111112223678888888
Q ss_pred HHhhcccc
Q 031612 125 TVQVRSRT 132 (156)
Q Consensus 125 t~~~~~~~ 132 (156)
..-+...+
T Consensus 139 ~~~~~g~~ 146 (158)
T 1naf_A 139 KQLVRGEE 146 (158)
T ss_dssp HHHHC---
T ss_pred HHHhcCCC
Confidence 87765433
No 122
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=20.89 E-value=1.7e+02 Score=18.62 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 031612 49 MKLVSRIKKVQEDLPILKEQCRELLAAKQ 77 (156)
Q Consensus 49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKq 77 (156)
|+|-+.|+.--.+--+|..+++.++.+++
T Consensus 14 vkltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 14 VKLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555555555555566666666555544
No 123
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=20.78 E-value=2.6e+02 Score=20.64 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHH
Q 031612 18 NLLTKSNHELTMVQYKLEKEFQQIYPDN-ANPMKLVSRIKKVQEDLPIL-KEQCRELLAAKQDLI 80 (156)
Q Consensus 18 ~~FqKAesDLdyIq~RLE~Ef~~~~pd~-aNPv~Ll~rL~~Iksr~~aL-~~q~~~l~aeKqel~ 80 (156)
..|++++.=+..|..+-..=-...+|+. ...-.++++.+.++.++.++ ..++..+...-++|+
T Consensus 5 ~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~ 69 (218)
T 3edu_A 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLI 69 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455555555555554221111122222 14556677777777777763 566666665555544
No 124
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=20.64 E-value=55 Score=18.98 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHH
Q 031612 22 KSNHELTMVQYKLEK 36 (156)
Q Consensus 22 KAesDLdyIq~RLE~ 36 (156)
.|+|.|+|.|.-||.
T Consensus 2 eaesaleyaqqalek 16 (30)
T 3s0r_A 2 EAESALEYAQQALEK 16 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHH
Confidence 478888888888875
No 125
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.27 E-value=1.3e+02 Score=17.01 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCREL 72 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l 72 (156)
|-.++..+|.+..+|+..++++
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3445556666666666666554
No 126
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.24 E-value=2.6e+02 Score=20.48 Aligned_cols=65 Identities=12% Similarity=0.274 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 24 NHELTMVQYKLEKEFQQIYPDNA-NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR 89 (156)
Q Consensus 24 esDLdyIq~RLE~Ef~~~~pd~a-NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~ 89 (156)
-.||-.-.+..|+ +..+.|+.. .|-.=++||++++.++...-.+.++...++.++...|+..|..
T Consensus 63 a~dli~k~kqIe~-LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 63 STDIILKTRQINK-LIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHH-HHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554 567889765 7888899999999999999999999999999999999887753
No 127
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.17 E-value=1e+02 Score=21.50 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 031612 51 LVSRIKKVQEDLPILKEQCRELLA 74 (156)
Q Consensus 51 Ll~rL~~Iksr~~aL~~q~~~l~a 74 (156)
|.++|+.++.++..|...+..+-.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788888888877777766554
No 128
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=20.07 E-value=3e+02 Score=21.05 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHH----------HHHHHh---CCCCC-Ch-HHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q 031612 15 GLVNLLTKSNHELTMVQYKLE----------KEFQQI---YPDNA-NP-MKLVSRIKKVQEDLPILKEQCRELLAA---- 75 (156)
Q Consensus 15 ~Le~~FqKAesDLdyIq~RLE----------~Ef~~~---~pd~a-NP-v~Ll~rL~~Iksr~~aL~~q~~~l~ae---- 75 (156)
.++.++..+..-+|-|--|+- .||... .|+.. +. ..--.-|+.|-+.+.++...++++...
T Consensus 59 ~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~i~e~~~~~~~~~~e~l~~l~~d~~~~~~~~r~~i~~a~e~ 138 (179)
T 1zuj_A 59 KFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHKFIENDPKAKYWTDEALIENFINDFQNQNLFIGRAIKLAQKE 138 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455666677777888888885 366666 23332 21 234466777888888888888886632
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhH
Q 031612 76 ----KQDLIDKASAILVRNRNLVQRMQVSLDIPVANESED 111 (156)
Q Consensus 76 ----Kqel~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~ 111 (156)
=.+++..+-+.+.++.=|++........+ ++||++
T Consensus 139 ~D~~Tadll~~~~~~~EK~~WmL~a~L~~~~~~-~~ee~~ 177 (179)
T 1zuj_A 139 EKFSLELAIRKLYGYNLSIIPYFAGELGKTIGE-FIEEED 177 (179)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTC-C-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-cccccc
Confidence 23677778888888888888877655444 766554
No 129
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.07 E-value=1.4e+02 Score=17.92 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031612 61 DLPILKEQCRELLAAKQDLIDKAS 84 (156)
Q Consensus 61 r~~aL~~q~~~l~aeKqel~d~ir 84 (156)
|+.-|.+.+++|+.++.++-+.+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 567788999999999998876554
Done!