Query 031613
Match_columns 156
No_of_seqs 315 out of 1379
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_f 40S ribosomal protein S 100.0 5.6E-63 1.9E-67 363.0 2.8 151 1-151 1-151 (152)
2 2xzm_9 RPS31E; ribosome, trans 100.0 2.5E-56 8.6E-61 336.4 2.3 146 1-153 1-146 (189)
3 4fbj_B NEDD8; effector-HOST ta 99.9 5.4E-23 1.8E-27 137.3 9.8 79 1-79 1-79 (88)
4 3phx_B Ubiquitin-like protein 99.9 1.2E-22 4.2E-27 132.5 10.3 75 1-75 5-79 (79)
5 1ndd_A NEDD8, protein (ubiquit 99.9 4E-22 1.4E-26 128.4 10.4 76 1-76 1-76 (76)
6 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 4.1E-22 1.4E-26 134.5 10.7 80 1-80 2-81 (96)
7 3a9j_A Ubiquitin; protein comp 99.9 9.1E-22 3.1E-26 126.7 10.8 76 1-76 1-76 (76)
8 3n3k_B Ubiquitin; hydrolase, p 99.9 3.9E-22 1.3E-26 131.4 9.1 78 1-78 4-81 (85)
9 1se9_A Ubiquitin family; ubiqu 99.9 4E-22 1.4E-26 141.1 9.5 90 1-92 17-120 (126)
10 1sif_A Ubiquitin; hydrophobic 99.9 6.4E-22 2.2E-26 132.1 9.9 77 1-77 10-86 (88)
11 3dbh_I NEDD8; cell cycle, acti 99.9 4.5E-22 1.5E-26 132.0 8.9 76 1-76 13-88 (88)
12 4hcn_B Polyubiquitin, ubiquiti 99.9 8.3E-22 2.8E-26 134.0 9.9 76 1-76 23-98 (98)
13 3mtn_B UBA80, ubcep1, ubiquiti 99.9 8.8E-22 3E-26 129.6 9.7 77 1-77 4-80 (85)
14 2uyz_B Small ubiquitin-related 99.9 8.8E-22 3E-26 128.4 8.3 76 1-76 4-79 (79)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 1.3E-21 4.5E-26 129.7 9.3 78 1-78 8-85 (87)
16 2hj8_A Interferon-induced 17 k 99.9 1E-21 3.5E-26 131.0 8.5 78 1-78 5-82 (88)
17 2kan_A Uncharacterized protein 99.9 2E-21 6.8E-26 131.4 9.2 77 1-78 16-93 (94)
18 1wy8_A NP95-like ring finger p 99.9 4.6E-21 1.6E-25 127.6 10.1 77 1-77 8-86 (89)
19 3plu_A Ubiquitin-like modifier 99.9 3.9E-21 1.3E-25 129.1 9.6 70 1-70 22-91 (93)
20 2kk8_A Uncharacterized protein 99.8 3.6E-21 1.2E-25 127.5 9.0 73 1-73 11-84 (84)
21 1wyw_B Ubiquitin-like protein 99.8 3.1E-21 1.1E-25 131.0 8.6 76 1-76 22-97 (97)
22 3vdz_A Ubiquitin-40S ribosomal 99.8 5.9E-21 2E-25 132.7 10.1 76 1-76 36-111 (111)
23 1yx5_B Ubiquitin; proteasome, 99.8 9.4E-21 3.2E-25 128.6 10.7 79 1-79 1-79 (98)
24 3v6c_B Ubiquitin; structural g 99.8 6.5E-21 2.2E-25 127.7 9.4 74 1-74 18-91 (91)
25 4dwf_A HLA-B-associated transc 99.8 8.9E-21 3.1E-25 126.6 9.8 77 1-78 6-82 (90)
26 2l7r_A Ubiquitin-like protein 99.8 5.7E-21 1.9E-25 128.8 8.7 74 1-76 20-93 (93)
27 3l0w_B Monoubiquitinated proli 99.8 1.5E-20 5.2E-25 139.6 11.2 78 1-78 1-78 (169)
28 2faz_A Ubiquitin-like containi 99.8 2.1E-20 7.2E-25 121.4 9.6 73 1-73 3-77 (78)
29 1wgd_A Homocysteine-responsive 99.8 1.3E-20 4.3E-25 126.9 8.4 77 1-77 8-90 (93)
30 3rt3_B Ubiquitin-like protein 99.8 2.2E-20 7.5E-25 136.7 10.2 77 1-77 82-158 (159)
31 2lxa_A Ubiquitin-like protein 99.8 1E-20 3.5E-25 126.2 7.0 73 1-73 2-78 (87)
32 1uel_A HHR23B, UV excision rep 99.8 7.2E-20 2.5E-24 123.7 11.2 78 1-78 1-81 (95)
33 2ojr_A Ubiquitin; lanthide-bin 99.8 4.7E-20 1.6E-24 128.0 10.4 76 1-76 36-111 (111)
34 4eew_A Large proline-rich prot 99.8 4.3E-20 1.5E-24 122.7 9.6 71 1-72 18-88 (88)
35 3b1l_X E3 ubiquitin-protein li 99.7 5.2E-22 1.8E-26 128.4 0.0 75 1-75 1-75 (76)
36 3q3f_A Ribonuclease/ubiquitin 99.8 2.6E-20 8.9E-25 140.5 9.0 79 1-79 106-184 (189)
37 1we6_A Splicing factor, putati 99.8 2.2E-20 7.5E-25 129.7 7.9 78 1-78 28-109 (111)
38 1uh6_A Ubiquitin-like 5; beta- 99.8 2.2E-20 7.5E-25 127.4 7.6 71 1-71 29-99 (100)
39 2dzi_A Ubiquitin-like protein 99.8 4.9E-20 1.7E-24 120.2 9.0 73 1-73 8-80 (81)
40 2kdi_A Ubiquitin, vacuolar pro 99.8 1E-19 3.4E-24 127.1 10.7 78 1-78 10-87 (114)
41 2wyq_A HHR23A, UV excision rep 99.8 1.5E-19 5.2E-24 119.1 10.3 73 1-73 6-81 (85)
42 3u5e_m 60S ribosomal protein L 99.8 1.7E-21 5.8E-26 138.6 0.1 78 1-78 1-78 (128)
43 3m62_B UV excision repair prot 99.8 6E-20 2.1E-24 126.6 7.8 74 1-74 2-75 (106)
44 2gow_A HCG-1 protein, ubiquiti 99.8 1.2E-19 4.2E-24 128.5 9.4 79 1-79 18-106 (125)
45 1wx8_A Riken cDNA 4931431F19; 99.8 4.5E-20 1.6E-24 124.6 6.8 77 1-78 18-94 (96)
46 1we7_A SF3A1 protein; structur 99.8 1.2E-19 4E-24 126.8 9.1 79 1-79 26-114 (115)
47 2bwf_A Ubiquitin-like protein 99.8 2.6E-19 8.8E-24 115.7 9.8 71 1-72 5-75 (77)
48 1yqb_A Ubiquilin 3; structural 99.8 1.4E-19 4.8E-24 123.6 8.8 76 1-77 23-98 (100)
49 2fnj_B Transcription elongatio 99.8 1.2E-19 4.3E-24 127.0 8.7 76 1-77 1-84 (118)
50 2k4x_A 30S ribosomal protein S 99.8 2.5E-21 8.4E-26 118.3 -0.2 49 100-151 1-49 (55)
51 3j20_Y 30S ribosomal protein S 99.8 1.4E-20 4.9E-25 112.7 2.9 46 102-151 4-49 (50)
52 4a20_A Ubiquitin-like protein 99.8 1.9E-19 6.5E-24 122.6 8.4 72 1-72 20-95 (98)
53 1j8c_A Ubiquitin-like protein 99.8 3.5E-19 1.2E-23 126.2 9.8 78 1-79 33-110 (125)
54 1v2y_A 3300001G02RIK protein; 99.8 7.9E-20 2.7E-24 125.8 6.0 76 1-76 8-99 (105)
55 1wju_A NEDD8 ultimate buster-1 99.8 2.9E-19 1E-23 121.8 8.3 75 2-77 17-95 (100)
56 1v5o_A 1700011N24RIK protein; 99.8 3E-19 1E-23 122.2 8.0 79 1-79 8-91 (102)
57 4ajy_B Transcription elongatio 99.8 4.7E-19 1.6E-23 123.7 9.1 73 1-73 1-81 (118)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.8 4.4E-19 1.5E-23 122.0 8.8 77 1-78 18-94 (106)
59 2klc_A Ubiquilin-1; ubiquitin- 99.8 8.8E-19 3E-23 119.7 10.0 74 1-75 26-99 (101)
60 1ttn_A DC-UBP, dendritic cell- 99.8 4.6E-19 1.6E-23 122.0 8.5 76 1-76 24-99 (106)
61 3u30_A Ubiquitin, linear DI-ub 99.8 5.1E-19 1.8E-23 131.2 8.8 76 1-76 97-172 (172)
62 3u30_A Ubiquitin, linear DI-ub 99.8 1.1E-18 3.8E-23 129.3 10.2 78 1-78 21-98 (172)
63 1wgh_A Ubiquitin-like 3, HCG-1 99.8 1.1E-18 3.8E-23 122.0 9.6 78 1-78 17-104 (116)
64 3b08_A Polyubiquitin-C, ubiqui 99.8 1.7E-18 5.9E-23 124.9 10.5 76 1-76 77-152 (152)
65 3rt3_B Ubiquitin-like protein 99.8 4.1E-18 1.4E-22 124.6 10.4 76 1-76 3-81 (159)
66 3b08_A Polyubiquitin-C, ubiqui 99.8 6.3E-18 2.2E-22 122.0 10.8 77 1-77 1-77 (152)
67 4dbg_A Ranbp-type and C3HC4-ty 99.7 1.1E-17 3.6E-22 115.0 9.8 72 1-72 25-99 (105)
68 2kdb_A Homocysteine-responsive 99.7 3.1E-18 1.1E-22 116.8 6.8 70 1-70 24-99 (99)
69 3m63_B Ubiquitin domain-contai 99.7 1.6E-18 5.5E-23 118.5 5.0 71 1-72 29-99 (101)
70 2kd0_A LRR repeats and ubiquit 99.7 1.5E-17 5E-22 110.3 8.8 70 3-72 14-83 (85)
71 1v5t_A 8430435I17RIK protein; 99.7 9.2E-18 3.2E-22 112.3 7.3 71 1-72 8-82 (90)
72 1wia_A Hypothetical ubiquitin- 99.7 1.7E-17 5.7E-22 111.8 7.7 74 1-77 8-82 (95)
73 1x1m_A Ubiquitin-like protein 99.7 2.3E-17 7.8E-22 113.7 8.4 74 1-74 13-101 (107)
74 1wgg_A Ubiquitin carboxyl-term 99.7 9.4E-18 3.2E-22 113.7 6.3 71 1-73 8-79 (96)
75 1wxv_A BAG-family molecular ch 99.7 4.9E-17 1.7E-21 108.9 8.2 72 1-73 8-85 (92)
76 1v86_A DNA segment, CHR 7, way 99.7 3.1E-17 1.1E-21 110.8 6.1 70 1-72 18-87 (95)
77 2daf_A FLJ35834 protein; hypot 99.7 1.1E-16 3.7E-21 111.4 8.7 72 2-73 17-89 (118)
78 3ai5_A Yeast enhanced green fl 99.7 1E-16 3.5E-21 128.7 9.4 74 1-74 234-307 (307)
79 2dzm_A FAS-associated factor 1 99.7 5.8E-17 2E-21 110.6 6.8 74 1-75 9-84 (100)
80 2kjr_A CG11242; UBL, ubiquitin 99.7 2E-16 6.9E-21 107.0 9.0 70 1-70 16-93 (95)
81 2dzj_A Synaptic glycoprotein S 99.7 6.6E-17 2.3E-21 107.9 6.0 69 1-69 11-85 (88)
82 2io1_B Small ubiquitin-related 99.6 6.2E-16 2.1E-20 104.4 8.7 77 1-77 8-84 (94)
83 4b6w_A Tubulin-specific chaper 99.6 2.1E-16 7.2E-21 105.0 6.2 71 2-72 4-83 (86)
84 2kj6_A Tubulin folding cofacto 99.6 6E-16 2.1E-20 105.0 7.5 70 2-71 16-94 (97)
85 1oqy_A HHR23A, UV excision rep 99.6 7.2E-16 2.5E-20 126.7 7.9 78 1-78 8-89 (368)
86 1wf9_A NPL4 family protein; be 99.6 6.1E-16 2.1E-20 106.6 6.0 71 1-72 8-94 (107)
87 2io0_B Small ubiquitin-related 99.6 4.9E-15 1.7E-19 99.4 9.4 78 1-78 6-83 (91)
88 1v6e_A Cytoskeleton-associated 99.6 2.4E-15 8.2E-20 101.4 7.5 71 1-71 8-86 (95)
89 2d07_B Ubiquitin-like protein 99.6 1.3E-14 4.4E-19 97.7 9.2 76 1-76 18-93 (93)
90 1t0y_A Tubulin folding cofacto 99.6 9.2E-15 3.1E-19 102.9 8.4 71 1-71 7-85 (122)
91 2kzr_A Ubiquitin thioesterase 99.6 4.8E-15 1.7E-19 98.1 5.7 71 1-72 1-77 (86)
92 1wz0_A Ubiquitin-like protein 99.5 2E-14 6.8E-19 98.6 8.0 78 1-78 25-102 (104)
93 1wm3_A Ubiquitin-like protein 99.5 7.7E-14 2.6E-18 89.5 8.7 70 1-70 2-71 (72)
94 2eke_C Ubiquitin-like protein 99.5 5.6E-14 1.9E-18 96.6 8.5 75 1-76 32-106 (106)
95 2k8h_A Small ubiquitin protein 99.5 3.4E-14 1.2E-18 98.4 7.0 77 1-77 27-103 (110)
96 3shq_A UBLCP1; phosphatase, hy 99.5 3.7E-14 1.3E-18 114.7 7.7 73 1-74 6-81 (320)
97 3a4r_A Nfatc2-interacting prot 99.5 4.7E-13 1.6E-17 87.3 9.1 70 1-70 8-78 (79)
98 1wjn_A Tubulin-folding protein 99.4 1.9E-12 6.4E-17 87.4 7.9 71 2-72 11-92 (97)
99 3kyd_D Small ubiquitin-related 99.2 6.3E-11 2.2E-15 82.3 9.7 75 1-75 41-115 (115)
100 3pge_A SUMO-modified prolifera 99.2 1.2E-10 4.1E-15 88.2 9.1 77 1-78 30-106 (200)
101 3tix_A Ubiquitin-like protein 99.1 1.5E-10 5E-15 86.8 7.2 77 1-78 58-134 (207)
102 2pjh_A Protein NPL4, nuclear p 99.0 3.7E-10 1.3E-14 73.7 4.1 69 1-70 5-78 (80)
103 3goe_A DNA repair protein RAD6 99.0 5.9E-09 2E-13 67.0 9.3 70 2-71 11-81 (82)
104 3v7o_A Minor nucleoprotein VP3 98.9 1.5E-10 5.1E-15 87.8 0.2 77 1-78 22-98 (227)
105 2jxx_A Nfatc2-interacting prot 98.7 9.9E-08 3.4E-12 64.3 8.7 70 1-70 26-96 (97)
106 3uf8_A Ubiquitin-like protein 98.6 1.5E-07 5.1E-12 71.6 8.0 76 2-78 23-98 (209)
107 4efo_A Serine/threonine-protei 98.5 5.2E-07 1.8E-11 60.3 8.3 68 3-70 15-86 (94)
108 3ix6_A TS, tsase, thymidylate 98.5 1.3E-08 4.4E-13 83.1 0.0 77 1-78 22-98 (360)
109 2l76_A Nfatc2-interacting prot 98.4 1.6E-06 5.6E-11 57.8 8.6 70 1-71 22-91 (95)
110 2al3_A TUG long isoform; TUG U 98.4 1.7E-06 6E-11 57.1 7.6 71 1-71 10-80 (90)
111 2kc2_A Talin-1, F1; FERM, adhe 98.3 2.3E-06 8E-11 60.2 6.7 69 2-70 13-120 (128)
112 4da1_A Protein phosphatase 1K, 98.3 1.2E-07 4.2E-12 78.0 0.0 77 2-79 32-108 (389)
113 2bps_A YUKD protein; ubiquitin 98.1 1.6E-05 5.4E-10 51.7 7.6 68 2-69 6-80 (81)
114 3qx1_A FAS-associated factor 1 98.1 3.2E-05 1.1E-09 50.3 8.9 68 2-70 9-81 (84)
115 2zkr_2 60S ribosomal protein L 97.8 6.1E-06 2.1E-10 54.8 1.4 27 117-148 15-41 (97)
116 2dzk_A UBX domain-containing p 97.8 0.0002 6.8E-09 48.9 9.0 69 2-70 15-88 (109)
117 1wj4_A KIAA0794 protein; UBX d 97.7 0.0002 7E-09 49.9 7.9 69 2-71 45-118 (124)
118 2cr5_A Reproduction 8; UBX dom 97.3 0.0012 4.1E-08 44.9 7.8 69 2-71 25-97 (109)
119 1s3s_G P47 protein; AAA ATPase 97.2 0.0013 4.5E-08 45.9 7.3 66 2-67 54-123 (127)
120 2l32_A Small archaeal modifier 97.1 0.002 6.9E-08 40.8 6.7 66 1-76 1-66 (74)
121 1ryj_A Unknown; beta/alpha pro 97.0 0.0077 2.6E-07 37.4 8.8 66 1-76 5-70 (70)
122 2daj_A KIAA0977 protein, COBL- 96.8 0.0027 9.2E-08 41.3 5.4 62 2-63 12-76 (91)
123 1vjk_A Molybdopterin convertin 96.5 0.022 7.5E-07 37.6 8.6 71 1-76 10-98 (98)
124 3rpf_C Molybdopterin convertin 96.5 0.012 4E-07 36.8 6.7 71 1-76 1-74 (74)
125 4a3p_A Ubiquitin carboxyl-term 96.4 0.012 4E-07 44.6 7.6 65 12-76 141-212 (217)
126 1tyg_B YJBS; alpha beta barrel 96.3 0.0095 3.3E-07 38.9 5.9 61 9-76 26-87 (87)
127 3jyu_A Ubiquitin carboxyl-term 96.2 0.028 9.4E-07 42.9 8.9 66 12-77 153-225 (231)
128 4e71_A Plexin-B2, MM1; transme 96.1 0.041 1.4E-06 37.4 8.4 62 10-71 23-109 (111)
129 2k5p_A THis protein, thiamine- 96.0 0.0088 3E-07 38.2 4.3 68 1-78 1-71 (78)
130 2juo_A GA-binding protein alph 95.8 0.045 1.5E-06 35.4 7.0 61 13-73 5-65 (89)
131 3po0_A Small archaeal modifier 95.8 0.083 2.8E-06 33.9 8.5 61 11-76 18-89 (89)
132 1f0z_A THis protein; ubiquitin 95.8 0.015 5E-07 35.6 4.5 66 1-76 1-66 (66)
133 3dwg_C 9.5 kDa culture filtrat 95.7 0.06 2.1E-06 34.9 7.6 74 1-76 1-93 (93)
134 2kl0_A Putative thiamin biosyn 95.5 0.017 6E-07 36.3 4.1 66 1-77 1-66 (73)
135 1oey_A P67-PHOX, neutrophil cy 95.3 0.04 1.4E-06 35.6 5.5 45 2-48 7-51 (83)
136 3h6n_A Plexin-D1; structural g 95.3 0.16 5.4E-06 35.3 8.8 64 9-72 15-104 (127)
137 3ivf_A Talin-1; FERM domain, c 95.1 0.12 4.2E-06 41.6 8.9 76 2-78 5-97 (371)
138 2r2o_A Plexin-B1; effector dom 94.9 0.13 4.5E-06 36.2 7.4 62 11-72 41-128 (138)
139 4e74_A Plexin-A4; RBD, structu 94.6 0.15 5.2E-06 34.9 7.0 62 11-72 27-114 (117)
140 3j21_g 50S ribosomal protein L 94.5 0.015 5.3E-07 34.1 1.7 26 117-148 13-38 (51)
141 2qjl_A URM1, ubiquitin-related 94.3 0.47 1.6E-05 31.0 8.9 75 1-76 2-99 (99)
142 1wgk_A Riken cDNA 2900073H19 p 94.1 0.19 6.3E-06 34.2 6.7 75 1-77 12-109 (114)
143 1fm0_D Molybdopterin convertin 93.6 0.18 6.1E-06 31.5 5.6 59 12-76 18-81 (81)
144 2cu3_A Unknown function protei 93.5 0.18 6.1E-06 30.4 5.2 60 9-76 5-64 (64)
145 2q5w_D Molybdopterin convertin 93.4 0.16 5.4E-06 31.5 5.0 60 11-76 16-77 (77)
146 2kvr_A Ubiquitin carboxyl-term 93.1 0.12 4E-06 36.1 4.4 33 13-45 58-90 (130)
147 1vd2_A Protein kinase C, IOTA 92.5 0.56 1.9E-05 30.5 6.8 46 3-48 7-54 (89)
148 1ef1_A Moesin; membrane, FERM 92.5 1 3.5E-05 34.7 9.6 71 1-72 2-78 (294)
149 2l52_A Methanosarcina acetivor 92.4 0.71 2.4E-05 30.2 7.3 72 1-76 4-99 (99)
150 1h4r_A Merlin; FERM, neurofibr 92.2 1.3 4.6E-05 34.5 10.0 71 1-72 23-98 (314)
151 1vq8_Z 50S ribosomal protein L 92.0 0.09 3.1E-06 33.9 2.4 31 117-149 26-56 (83)
152 2k9x_A Tburm1, uncharacterized 91.4 0.099 3.4E-06 35.4 2.2 75 1-77 5-103 (110)
153 2g1e_A Hypothetical protein TA 91.3 0.75 2.6E-05 29.1 6.4 62 14-76 18-90 (90)
154 1rws_A Hypothetical protein PF 91.2 0.06 2E-06 33.9 0.9 54 14-76 24-77 (77)
155 3kuz_A Plexin-C1; structural g 91.2 1.2 4E-05 30.9 7.4 60 11-70 39-124 (126)
156 2jmo_A Parkin; IBR, E3 ligase, 90.7 0.068 2.3E-06 34.0 0.8 34 118-151 25-63 (80)
157 3ivf_A Talin-1; FERM domain, c 90.2 2.1 7E-05 34.3 9.4 71 2-72 87-167 (371)
158 2kmc_A Fermitin family homolog 90.1 2.8 9.7E-05 27.7 8.2 70 2-71 21-98 (102)
159 1y8x_B Ubiquitin-activating en 90.0 0.29 9.9E-06 32.5 3.5 59 12-70 6-82 (98)
160 1ip9_A BEM1 protein; ubiquitin 90.0 0.97 3.3E-05 29.1 5.8 40 8-48 19-58 (85)
161 3cc2_Z 50S ribosomal protein L 90.0 0.18 6.1E-06 34.4 2.4 32 116-149 58-89 (116)
162 3ig3_A Plxna3 protein; plexin 89.7 2.1 7.2E-05 37.1 9.4 63 11-73 247-335 (627)
163 4eut_A Serine/threonine-protei 89.4 1.8 6.3E-05 34.4 8.5 51 11-61 322-374 (396)
164 4a17_Y RPL37A, 60S ribosomal p 88.3 0.25 8.4E-06 33.0 2.1 32 116-149 34-65 (103)
165 3j21_i 50S ribosomal protein L 88.3 0.27 9.4E-06 31.6 2.3 31 117-149 34-64 (83)
166 2ct7_A Ring finger protein 31; 88.2 0.17 5.7E-06 32.5 1.2 32 118-151 25-56 (86)
167 2kmm_A Guanosine-3',5'-BIS(dip 88.0 2.1 7.2E-05 25.7 6.3 62 1-71 1-62 (73)
168 1wgy_A RAP guanine nucleotide 87.9 3.8 0.00013 27.3 7.9 66 5-72 14-86 (104)
169 1ffk_W Ribosomal protein L37AE 87.8 0.26 9E-06 30.9 1.9 32 116-149 25-56 (73)
170 2i1j_A Moesin; FERM, coiled-co 87.6 3.3 0.00011 35.5 9.3 71 1-72 5-81 (575)
171 2c7h_A RBBP6, retinoblastoma-b 87.5 3 0.0001 26.8 6.9 70 3-76 9-84 (86)
172 3iz5_m 60S ribosomal protein L 87.2 0.29 1E-05 32.1 2.0 31 117-149 35-65 (92)
173 3izc_m 60S ribosomal protein R 87.1 0.29 9.8E-06 32.1 1.9 31 117-149 35-65 (92)
174 3j21_e 50S ribosomal protein L 86.8 0.27 9.3E-06 29.7 1.5 24 118-146 17-40 (62)
175 3u5c_e 40S ribosomal protein S 86.4 0.18 6E-06 30.7 0.5 27 73-99 4-30 (63)
176 3hm6_X Plexin-B1; structural g 86.3 3.7 0.00012 35.7 8.7 63 11-73 274-362 (644)
177 1j0g_A Hypothetical protein 18 86.2 3.4 0.00012 26.3 6.5 64 13-76 26-90 (92)
178 1vq8_1 50S ribosomal protein L 86.0 0.33 1.1E-05 28.9 1.6 24 118-146 17-40 (57)
179 3qij_A Protein 4.1; cytoskelet 84.9 1.7 6E-05 33.8 5.8 59 1-59 18-82 (296)
180 3jyw_9 60S ribosomal protein L 84.7 0.26 8.9E-06 30.9 0.7 30 117-148 25-54 (72)
181 2ylm_A Ubiquitin carboxyl-term 84.0 1.1 3.9E-05 38.0 4.6 32 13-44 38-69 (530)
182 1wgr_A Growth factor receptor- 82.9 2.8 9.4E-05 27.8 5.2 67 3-69 12-89 (100)
183 2xzm_X RPS30E; ribosome, trans 82.2 0.35 1.2E-05 30.8 0.6 28 72-99 3-31 (80)
184 3u52_E Phenol hydroxylase comp 82.0 5 0.00017 27.3 6.3 61 12-72 39-109 (119)
185 3onh_A Ubiquitin-activating en 81.9 4.4 0.00015 28.0 6.1 57 14-71 9-78 (127)
186 3qa8_A MGC80376 protein; kinas 81.8 1.5 5.1E-05 38.4 4.6 50 10-59 321-371 (676)
187 1wfl_A Zinc finger protein 216 81.5 0.29 1E-05 30.7 0.0 26 113-142 34-61 (74)
188 4a18_A RPL37, ribosomal protei 80.3 0.76 2.6E-05 30.0 1.7 25 117-146 15-39 (94)
189 2hj1_A Hypothetical protein; s 80.1 4.1 0.00014 26.7 5.3 62 12-78 27-91 (97)
190 2inc_C TOUB protein; DIIRON, 4 78.7 10 0.00035 24.1 8.0 61 12-72 14-82 (83)
191 1wfh_A Zinc finger (AN1-like) 78.7 0.34 1.2E-05 29.6 -0.3 24 115-142 26-51 (64)
192 3iz5_l 60S ribosomal protein L 77.3 0.8 2.7E-05 29.9 1.1 25 117-146 15-39 (94)
193 1wg2_A Zinc finger (AN1-like) 77.2 0.77 2.6E-05 28.0 0.9 22 117-142 28-51 (64)
194 3ge3_C Toluene-4-monooxygenase 77.1 12 0.0004 23.9 6.7 60 12-71 16-82 (84)
195 1v8c_A MOAD related protein; r 74.6 8.3 0.00028 27.6 6.1 62 14-77 17-88 (168)
196 3h0g_I DNA-directed RNA polyme 74.0 1.3 4.6E-05 29.8 1.6 27 119-149 5-37 (113)
197 1wii_A Hypothetical UPF0222 pr 74.0 3 0.0001 26.7 3.2 35 117-153 22-62 (85)
198 3hk0_A Growth factor receptor- 72.9 9.1 0.00031 29.4 6.3 55 3-57 11-72 (256)
199 1x4v_A Hypothetical protein LO 72.2 0.65 2.2E-05 28.2 -0.3 25 116-143 25-51 (63)
200 3qt1_I DNA-directed RNA polyme 71.2 1.1 3.7E-05 31.2 0.6 27 119-149 25-57 (133)
201 1wys_A Riken cDNA 2310008M20 p 71.2 0.83 2.9E-05 28.7 -0.0 27 114-143 25-53 (75)
202 1wfe_A Riken cDNA 2310008M20 p 70.8 1.3 4.5E-05 28.5 0.9 26 115-143 37-64 (86)
203 3au4_A Myosin-X; protein-prote 70.8 7.1 0.00024 32.9 5.7 44 1-44 217-262 (555)
204 3iz6_Z 40S ribosomal protein S 70.0 0.24 8.3E-06 29.9 -2.6 24 75-98 6-29 (62)
205 2dhz_A RAP guanine nucleotide 69.7 12 0.00041 25.5 5.6 64 7-72 16-92 (120)
206 1q1o_A Cell division control p 69.7 5.6 0.00019 26.2 3.8 28 10-37 22-49 (98)
207 4gmv_A RAS-associated and plec 69.0 10 0.00035 29.6 5.8 37 3-39 34-70 (281)
208 1wfp_A Zinc finger (AN1-like) 67.6 1.5 5E-05 27.5 0.6 24 115-142 36-61 (74)
209 3r8s_T 50S ribosomal protein L 67.0 14 0.00048 23.9 5.3 39 10-48 27-66 (93)
210 2zjr_Z 50S ribosomal protein L 67.0 3.1 0.00011 24.9 2.0 22 118-146 30-51 (60)
211 2eel_A Cell death activator CI 66.8 12 0.00042 24.2 4.9 49 21-72 28-78 (91)
212 2v1y_A Phosphatidylinositol-4, 66.4 11 0.00039 25.1 4.8 32 3-34 22-53 (108)
213 2ylm_A Ubiquitin carboxyl-term 65.7 5.2 0.00018 33.9 3.8 72 2-73 132-218 (530)
214 1qxf_A GR2, 30S ribosomal prot 64.8 7.5 0.00026 23.7 3.3 33 116-150 5-38 (66)
215 3h9d_A ATG8, microtubule-assoc 64.3 15 0.0005 24.9 5.2 57 15-71 52-112 (119)
216 1x4w_A Hypothetical protein FL 64.0 0.9 3.1E-05 28.0 -0.9 20 119-142 33-54 (67)
217 3tca_A Amyloid beta A4 precurs 63.7 17 0.00057 27.4 6.1 37 3-39 37-73 (291)
218 3v2d_5 50S ribosomal protein L 63.6 4.3 0.00015 24.3 2.1 22 118-146 30-51 (60)
219 3iz6_X 40S ribosomal protein S 63.3 3.8 0.00013 26.3 1.9 32 115-148 33-65 (86)
220 3pvl_A Myosin VIIA isoform 1; 63.2 12 0.00039 32.7 5.6 38 1-38 264-301 (655)
221 1pft_A TFIIB, PFTFIIBN; N-term 62.9 2 6.9E-05 24.3 0.5 30 118-149 5-35 (50)
222 3j20_W 30S ribosomal protein S 61.6 9.7 0.00033 23.0 3.4 34 115-150 12-46 (63)
223 1f2r_I Inhibitor of caspase-ac 61.6 27 0.00093 22.9 5.9 48 21-71 37-88 (100)
224 1vq8_S 50S ribosomal protein L 61.3 17 0.00057 23.2 4.8 34 10-43 22-55 (85)
225 1dl6_A Transcription factor II 61.1 4 0.00014 24.1 1.6 27 120-148 13-40 (58)
226 2r2q_A Gamma-aminobutyric acid 60.1 16 0.00054 24.2 4.7 57 15-71 48-108 (110)
227 1wff_A Riken cDNA 2810002D23 p 60.1 1.8 6E-05 27.9 -0.1 21 118-142 40-62 (85)
228 2lgx_A Fermitin family homolog 59.7 2.8 9.7E-05 28.1 0.9 60 11-70 36-100 (112)
229 2zjr_Q 50S ribosomal protein L 59.2 17 0.00058 23.6 4.6 32 12-43 24-55 (95)
230 3m95_A Autophagy related prote 59.2 17 0.00057 24.9 4.7 58 15-72 57-118 (125)
231 3tve_T 50S ribosomal protein L 58.8 17 0.00059 23.4 4.6 32 11-42 22-53 (92)
232 2js4_A UPF0434 protein BB2007; 58.7 5.9 0.0002 24.3 2.2 30 120-151 10-39 (70)
233 2jny_A Uncharacterized BCR; st 57.9 5.4 0.00019 24.3 1.9 30 120-151 12-41 (67)
234 1l1o_C Replication protein A 7 57.9 4.5 0.00015 29.3 1.8 30 118-148 43-72 (181)
235 1pqs_A Cell division control p 57.2 9.8 0.00034 23.8 3.0 36 12-47 3-43 (77)
236 1eo6_A GATE-16, golgi-associat 57.1 20 0.00067 24.1 4.8 58 15-72 49-110 (117)
237 3j21_T 50S ribosomal protein L 56.8 22 0.00077 22.6 4.8 34 10-43 23-56 (86)
238 3hvz_A Uncharacterized protein 55.5 34 0.0012 21.1 5.9 61 2-71 7-67 (78)
239 1twf_L ABC10-alpha, DNA-direct 54.4 3.9 0.00013 25.2 0.8 34 115-152 25-59 (70)
240 2zjd_A Microtubule-associated 53.8 20 0.0007 24.6 4.5 59 14-72 56-119 (130)
241 2pk7_A Uncharacterized protein 53.5 6.2 0.00021 24.2 1.6 30 120-151 10-39 (69)
242 2jr6_A UPF0434 protein NMA0874 53.2 7.4 0.00025 23.7 1.9 30 120-151 10-39 (68)
243 3rui_B Autophagy-related prote 52.9 28 0.00094 23.5 5.0 58 14-71 50-111 (118)
244 2hf1_A Tetraacyldisaccharide-1 52.5 7.5 0.00026 23.7 1.9 30 120-151 10-39 (68)
245 4ayb_P DNA-directed RNA polyme 52.0 2.2 7.4E-05 24.3 -0.6 11 139-149 4-14 (48)
246 3u50_C Telomerase-associated p 51.4 6.1 0.00021 28.6 1.6 26 119-147 43-68 (172)
247 2xzm_6 RPS27E; ribosome, trans 50.3 15 0.00052 23.2 3.1 34 115-150 29-63 (81)
248 1vk6_A NADH pyrophosphatase; 1 49.9 7.5 0.00026 29.9 2.0 29 118-148 107-135 (269)
249 3u5c_b RP61, YS20, 40S ribosom 49.3 16 0.00055 23.1 3.1 33 115-149 31-64 (82)
250 3chb_D Cholera toxin; toxin/re 47.4 23 0.00079 22.6 3.6 31 3-33 39-69 (104)
251 2zkr_s 60S ribosomal protein L 43.9 37 0.0013 24.1 4.7 33 11-43 94-126 (156)
252 1ibx_B Chimera of IGG binding 42.6 25 0.00085 24.7 3.5 46 21-68 82-131 (145)
253 4gop_C Putative uncharacterize 41.8 11 0.00039 30.8 1.9 31 117-148 307-337 (444)
254 3lxf_A Ferredoxin; iron, iron- 41.4 36 0.0012 21.9 4.1 26 2-27 2-27 (104)
255 4a17_R RPL23A, 60S ribosomal p 40.5 49 0.0017 23.3 4.8 34 10-43 87-120 (150)
256 4dxa_B KREV interaction trappe 40.1 31 0.0011 26.7 4.2 34 1-38 6-41 (322)
257 1gh9_A 8.3 kDa protein (gene M 39.5 11 0.00037 23.2 1.1 27 120-152 6-34 (71)
258 3u5e_X 60S ribosomal protein L 39.0 50 0.0017 23.1 4.6 33 11-43 80-112 (142)
259 2nvu_B Maltose binding protein 38.7 57 0.0019 28.6 6.1 59 12-70 713-789 (805)
260 2xzf_A Formamidopyrimidine-DNA 37.9 13 0.00046 28.5 1.7 26 119-146 243-270 (271)
261 1n62_A Carbon monoxide dehydro 37.4 28 0.00095 24.8 3.2 27 2-29 5-31 (166)
262 1wd2_A Ariadne-1 protein homol 36.2 4.6 0.00016 23.9 -1.0 32 117-150 5-38 (60)
263 3hrd_D Nicotinate dehydrogenas 36.1 30 0.001 24.6 3.2 26 2-28 5-30 (160)
264 1ltr_D ETB-R2, heat-labIle ent 36.0 29 0.001 22.4 2.8 31 3-33 38-68 (113)
265 1t3q_A Quinoline 2-oxidoreduct 35.7 31 0.0011 24.4 3.2 28 1-29 10-37 (168)
266 3h0g_L DNA-directed RNA polyme 35.1 9.4 0.00032 23.0 0.3 34 116-152 19-52 (63)
267 3u6p_A Formamidopyrimidine-DNA 35.0 14 0.0005 28.4 1.5 25 119-145 246-272 (273)
268 1ee8_A MUTM (FPG) protein; bet 34.8 15 0.00052 28.2 1.6 26 119-146 236-263 (266)
269 4gdk_A Ubiquitin-like protein 34.7 51 0.0017 21.0 3.9 58 14-71 23-84 (91)
270 2al6_A Focal adhesion kinase 1 34.7 35 0.0012 27.2 3.7 33 5-37 12-48 (375)
271 2jr3_A Pelovaterin; beta-defen 34.2 14 0.00047 19.7 0.8 9 122-130 4-12 (42)
272 1k82_A Formamidopyrimidine-DNA 34.1 15 0.00052 28.2 1.5 25 119-145 241-267 (268)
273 2be7_D Aspartate carbamoyltran 33.9 18 0.00062 25.7 1.7 33 118-150 105-146 (153)
274 1ffv_A CUTS, iron-sulfur prote 33.5 31 0.0011 24.5 2.9 27 2-29 5-31 (163)
275 1k3x_A Endonuclease VIII; hydr 33.3 16 0.00055 27.9 1.5 25 119-145 235-261 (262)
276 3iz5_X 60S ribosomal protein L 32.4 53 0.0018 23.2 3.9 33 11-43 90-122 (152)
277 3f5r_A FACT complex subunit PO 31.7 68 0.0023 23.5 4.5 47 2-48 86-132 (191)
278 4b2v_A S64; toxin, ICK; NMR {S 31.5 14 0.00049 18.4 0.6 15 137-151 17-31 (32)
279 2lvu_A Zinc finger and BTB dom 37.4 10 0.00035 16.7 0.0 12 139-150 3-14 (26)
280 1wfy_A Regulator of G-protein 31.1 95 0.0032 20.5 4.7 61 8-71 25-87 (104)
281 4dxe_H ACP, acyl carrier prote 31.0 39 0.0013 21.7 2.9 40 13-61 18-58 (101)
282 2bt6_A Adrenodoxin 1; rutheniu 30.6 58 0.002 20.8 3.7 26 2-27 8-33 (108)
283 2m0d_A Zinc finger and BTB dom 29.5 16 0.00054 16.3 0.6 11 139-149 4-14 (30)
284 3ga8_A HTH-type transcriptiona 29.5 23 0.00077 21.7 1.4 11 138-148 36-46 (78)
285 2kvh_A Zinc finger and BTB dom 29.0 16 0.00055 16.1 0.6 10 139-148 4-13 (27)
286 3w1s_C Ubiquitin-like protein 28.8 88 0.003 19.9 4.3 56 14-71 26-84 (91)
287 1rm6_C 4-hydroxybenzoyl-COA re 28.7 56 0.0019 23.0 3.6 23 8-30 9-31 (161)
288 2wlb_A ETP1-FD, electron trans 28.7 75 0.0026 20.0 4.0 27 2-28 5-31 (103)
289 1znf_A 31ST zinc finger from X 28.6 13 0.00046 16.3 0.2 10 139-148 2-11 (27)
290 4eku_A Protein-tyrosine kinase 28.6 73 0.0025 25.7 4.7 56 3-58 24-96 (392)
291 2kpi_A Uncharacterized protein 28.4 39 0.0013 19.5 2.3 28 120-151 12-41 (56)
292 3er7_A Uncharacterized NTF2-li 28.3 67 0.0023 21.5 3.8 28 95-123 94-121 (131)
293 2kvf_A Zinc finger and BTB dom 28.2 17 0.0006 16.1 0.6 11 139-149 4-14 (28)
294 1b44_D ETB-POL, protein (B-POL 28.1 38 0.0013 22.4 2.3 31 3-33 38-68 (129)
295 4bbr_M Transcription initiatio 27.6 26 0.0009 27.8 1.8 31 117-149 20-53 (345)
296 2m0f_A Zinc finger and BTB dom 27.4 18 0.00061 16.0 0.5 11 139-149 3-13 (29)
297 1wmh_B Partitioning defective- 27.2 1.2E+02 0.0042 19.1 5.2 45 3-47 7-54 (86)
298 2ztg_A Alanyl-tRNA synthetase; 27.0 32 0.0011 30.5 2.4 30 116-148 18-50 (739)
299 2v3b_B Rubredoxin 2, rubredoxi 26.9 20 0.00067 20.8 0.7 11 138-148 3-13 (55)
300 3m7n_A Putative uncharacterize 26.8 30 0.001 24.7 1.9 30 118-151 140-169 (179)
301 2kvg_A Zinc finger and BTB dom 26.7 17 0.00057 16.2 0.4 11 139-149 4-14 (27)
302 2y5c_A Adrenodoxin-like protei 26.5 75 0.0026 20.3 3.7 26 2-27 7-32 (109)
303 4esj_A Type-2 restriction enzy 25.8 23 0.00078 27.1 1.1 31 118-152 34-70 (257)
304 2y3a_A Phosphatidylinositol-4, 25.6 83 0.0028 29.2 4.9 69 3-72 54-136 (1092)
305 2yww_A Aspartate carbamoyltran 25.5 23 0.0008 25.0 1.0 31 118-148 105-143 (149)
306 1paa_A Yeast transcription fac 25.4 17 0.00057 16.4 0.2 10 139-148 3-12 (30)
307 1uwm_A Ferredoxin VI, FDVI; el 25.1 1.1E+02 0.0036 19.4 4.3 26 2-27 2-27 (106)
308 1s24_A Rubredoxin 2; electron 25.1 24 0.00082 22.6 1.0 10 138-147 35-44 (87)
309 1rik_A E6APC1 peptide; E6-bind 25.0 21 0.00072 15.8 0.6 10 139-148 3-12 (29)
310 3irb_A Uncharacterized protein 25.0 34 0.0012 23.6 1.9 29 111-147 42-70 (145)
311 1d4b_A CIDE B, human cell deat 24.9 29 0.00099 23.7 1.4 39 21-60 54-94 (122)
312 2dkt_A Ring finger and CHY zin 24.8 36 0.0012 23.8 1.9 25 114-146 67-91 (143)
313 2ktr_A Sequestosome-1; autopha 24.8 1.2E+02 0.0042 20.3 4.5 27 21-47 57-84 (117)
314 2apo_B Ribosome biogenesis pro 24.1 24 0.00082 21.0 0.7 17 118-137 18-34 (60)
315 2kn9_A Rubredoxin; metalloprot 24.0 23 0.0008 22.3 0.7 12 137-148 26-37 (81)
316 2elm_A Zinc finger protein 406 24.0 25 0.00087 17.1 0.8 12 139-150 10-21 (37)
317 1xlq_A Putidaredoxin, PDX; [2F 23.7 1.1E+02 0.0036 19.4 4.0 26 2-27 2-27 (106)
318 1dd4_C 50S ribosomal protein L 23.3 71 0.0024 17.2 2.5 17 23-39 18-34 (40)
319 2k2d_A Ring finger and CHY zin 23.3 47 0.0016 20.6 2.1 27 118-146 37-63 (79)
320 1qyp_A RNA polymerase II; tran 23.3 95 0.0032 17.5 3.3 30 118-149 15-54 (57)
321 2cu1_A Mitogen-activated prote 22.9 1.5E+02 0.0052 19.4 4.5 42 3-47 9-51 (103)
322 3lcz_A YCZA, inhibitor of trap 22.8 20 0.00068 20.6 0.2 21 118-145 9-30 (53)
323 1ard_A Yeast transcription fac 22.8 20 0.00068 15.9 0.2 10 139-148 3-12 (29)
324 1e8j_A Rubredoxin; iron-sulfur 22.7 22 0.00077 20.3 0.4 11 138-148 3-13 (52)
325 3hui_A Ferredoxin; cytochrome 22.5 97 0.0033 20.7 3.8 26 2-27 23-48 (126)
326 1awd_A Ferredoxin; electron tr 22.3 1.1E+02 0.0037 18.9 3.8 27 1-28 1-27 (94)
327 2ns5_A Partitioning-defective 22.2 1.6E+02 0.0053 18.6 6.8 68 1-70 3-80 (85)
328 1yk4_A Rubredoxin, RD; electro 22.1 27 0.00093 20.0 0.7 10 139-148 3-12 (52)
329 2elx_A Zinc finger protein 406 22.0 27 0.00091 16.4 0.6 12 138-149 7-18 (35)
330 1wz3_A Autophagy 12B, ATG12B, 21.8 83 0.0028 20.2 3.1 56 14-71 31-89 (96)
331 6rxn_A Rubredoxin; electron tr 21.8 27 0.00092 19.5 0.6 12 137-148 3-14 (46)
332 1jq4_A Methane monooxygenase c 21.7 1E+02 0.0034 19.2 3.5 28 2-29 6-33 (98)
333 1frr_A Ferredoxin I; electron 21.6 1E+02 0.0035 18.9 3.5 26 2-28 3-28 (95)
334 3vhs_A ATPase wrnip1; zinc fin 21.4 11 0.00039 18.5 -0.9 18 117-137 5-22 (29)
335 1srk_A Zinc finger protein ZFP 21.4 28 0.00095 16.4 0.6 11 139-149 8-18 (35)
336 2m0e_A Zinc finger and BTB dom 21.3 21 0.00072 15.6 0.1 10 139-148 3-12 (29)
337 1dvp_A HRS, hepatocyte growth 21.2 23 0.00078 26.1 0.3 28 119-150 162-189 (220)
338 1dx8_A Rubredoxin; electron tr 21.0 26 0.0009 21.4 0.5 10 137-146 39-48 (70)
339 2aus_D NOP10, ribosome biogene 21.0 35 0.0012 20.2 1.1 18 118-138 17-34 (60)
340 2a15_A Hypothetical protein RV 20.5 1.1E+02 0.0038 19.6 3.8 23 98-120 105-127 (139)
341 1klr_A Zinc finger Y-chromosom 20.4 22 0.00076 15.7 0.1 10 139-148 3-12 (30)
342 4rxn_A Rubredoxin; electron tr 20.4 35 0.0012 19.7 0.9 10 139-148 4-13 (54)
343 2jne_A Hypothetical protein YF 20.3 66 0.0023 21.0 2.3 30 117-150 31-60 (101)
No 1
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=100.00 E-value=5.6e-63 Score=362.98 Aligned_cols=151 Identities=72% Similarity=1.053 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k~ 80 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+++++||++++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccccceeeeeEeeeEEEcCCCeEEEeeccCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 81 KKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 81 ~kk~~~~pk~~k~~~kk~k~~~l~~y~vd~~g~~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
+|+.|++||+++|++||+||++|+||+||+||+|+|++++||++.||+|||||+|+||||||||||||+++
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCEECCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred ccccccccccccccccccccceeeEEEEccCCeEEECcCcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 99999999999999999999999999999999999999999988899999999999999999999999886
No 2
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=100.00 E-value=2.5e-56 Score=336.37 Aligned_cols=146 Identities=42% Similarity=0.718 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k~ 80 (156)
|+|+|++++|++++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|+ ++++|||+++++||++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~kr 75 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcccc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999999999988
Q ss_pred ccccccCCcccccccceeeeeEeeeEEEcCCCeEEEeeccCCCCccCCceEEeEeCCCCccCCceeEEEeecC
Q 031613 81 KKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153 (156)
Q Consensus 81 ~kk~~~~pk~~k~~~kk~k~~~l~~y~vd~~g~~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~~~ 153 (156)
+|+.|++||+++|++|++|+++|+||+||+||+|+|++++|| +||+|||||+|+||||||+|||||+|+++
T Consensus 76 kK~~~~tPK~~k~~kKkvkl~~Lk~y~Vd~~Gkv~~~~~~Cp--~Cg~g~fma~h~dR~~CGkC~~t~~~~~~ 146 (189)
T 2xzm_9 76 KKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCP--KCGPGIFMAKHYDRHYCGKCHLTLKIDXX 146 (189)
T ss_dssp CCCCCCSSSCCCCCCCCCCCSCCCCEEEETTTEEEECSEECS--TTCSSCEEEECSSCEEETTTCCCBCCHHH
T ss_pred cccccCCCccccccccccCCceeeEEEECCCceEEEccccCC--ccCCCccccCccCCCccCCceeEEEeecc
Confidence 899999999999999999999999999999999999999999 69999999999999999999999998875
No 3
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.89 E-value=5.4e-23 Score=137.33 Aligned_cols=79 Identities=54% Similarity=0.904 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k 79 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||+..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=132.48 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~g 75 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.88 E-value=4e-22 Score=128.36 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.88 E-value=4.1e-22 Score=134.52 Aligned_cols=80 Identities=93% Similarity=1.235 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKR 80 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k~ 80 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||...+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLR 81 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.87 E-value=9.1e-22 Score=126.68 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 8
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=3.9e-22 Score=131.41 Aligned_cols=78 Identities=78% Similarity=1.134 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||+-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999863
No 9
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.87 E-value=4e-22 Score=141.11 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHHH-----HHhCCCC--CceEEecCCeeccCCCcccccccCCC------CE
Q 031613 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (156)
Q Consensus 1 M~I~Vk~~~g~~~-~l~V~~~~TV~~LK~~I~-----~~~gip~--~~qrL~~~G~~L~d~~tL~~~gi~~~------st 66 (156)
|+|+||+.+|+.+ .+++++++||.+||++|+ +.+|+|+ ++|||+|+|++|+|+.+|++|+|+++ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 799999999999999994 5567886 79999999999999999999999988 68
Q ss_pred EEEEEeecCCccccccccccCCcccc
Q 031613 67 LHLVLRLRGGAKKRKKKTYTKPKKIK 92 (156)
Q Consensus 67 I~l~~~~~gg~~k~~kk~~~~pk~~k 92 (156)
+||+++++||+++ |+.|++|++..
T Consensus 97 mhlVlrl~g~~kk--kk~~~~pkk~~ 120 (126)
T 1se9_A 97 MHVIIQAPVTEKE--KKPKGDPKMNK 120 (126)
T ss_dssp EEEEECCCSSCCC--C----------
T ss_pred EEEEeccCCcccc--ccCCCCCCCCC
Confidence 9999999998775 78888888754
No 10
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=6.4e-22 Score=132.06 Aligned_cols=77 Identities=86% Similarity=1.257 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.87 E-value=4.5e-22 Score=131.99 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=74.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.3e-22 Score=134.00 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=8.8e-22 Score=129.56 Aligned_cols=77 Identities=91% Similarity=1.240 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.86 E-value=8.8e-22 Score=128.40 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|++.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.3e-21 Score=129.66 Aligned_cols=78 Identities=33% Similarity=0.520 Sum_probs=75.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~ 85 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPS 85 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999863
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=131.01 Aligned_cols=78 Identities=36% Similarity=0.601 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||+-
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999874
No 17
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=2e-21 Score=131.37 Aligned_cols=77 Identities=30% Similarity=0.474 Sum_probs=74.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCC-CcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~-~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|++.++ ++.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+|+++++|+|+++++||++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~~ 93 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSCC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCCC
Confidence 6899999877 899999999999999999999999999999999999999999 9999999999999999999999964
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=4.6e-21 Score=127.64 Aligned_cols=77 Identities=36% Similarity=0.620 Sum_probs=74.3
Q ss_pred CEEEEEeCCC-CEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g-~~~~l-~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|+.++| +++.+ +|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7999999999 69999 59999999999999999999999999999999999999999999999999999999999985
No 19
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.85 E-value=3.9e-21 Score=129.06 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
|+|+|+++.|+++.++++|++||.+||++|+++.|+|+++|+|+|+|++|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 20
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=3.6e-21 Score=127.55 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCee-ccCCCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~-L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+|++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998864
No 21
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.85 E-value=3.1e-21 Score=130.99 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|++++|+++.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 22
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.85 E-value=5.9e-21 Score=132.69 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997
No 23
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.85 E-value=9.4e-21 Score=128.56 Aligned_cols=79 Identities=92% Similarity=1.269 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k 79 (156)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++++||+.-
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999988653
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.84 E-value=6.5e-21 Score=127.72 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeec
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~ 74 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999874
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.84 E-value=8.9e-21 Score=126.56 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +|++|||++++.++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTH 82 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC---
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999999887764
No 26
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.84 E-value=5.7e-21 Score=128.77 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999997 8999999999999999999999999999999999999999999999999999999999999999997
No 27
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.84 E-value=1.5e-20 Score=139.61 Aligned_cols=78 Identities=95% Similarity=1.296 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++++||.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999975
No 28
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=2.1e-20 Score=121.43 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEE-EEE-ecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~-~l~-V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999885 999 999999999999999999999999999999999999999999999999999999875
No 29
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.3e-20 Score=126.85 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=73.2
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHHHh--CCCCCceEEecCCeeccCCCccccc--ccCCCCEEEEEEeec
Q 031613 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (156)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~~--gip~~~qrL~~~G~~L~d~~tL~~~--gi~~~stI~l~~~~~ 74 (156)
|+|+|++.+++ ++.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999888 67788889999999999999998 9999999999999999999999999 999999999999999
Q ss_pred CCc
Q 031613 75 GGA 77 (156)
Q Consensus 75 gg~ 77 (156)
||+
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 30
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.83 E-value=2.2e-20 Score=136.68 Aligned_cols=77 Identities=36% Similarity=0.610 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999996
No 31
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1e-20 Score=126.24 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHH-HHHhCCCCCceEEecCCeeccCCCccccccc-CCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~--~~~TV~~LK~~I-~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi-~~~stI~l~~~~ 73 (156)
|+|+||+++|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|++|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999998888755 999999999999 9999999999999999999999999999999 799999999864
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=7.2e-20 Score=123.69 Aligned_cols=78 Identities=28% Similarity=0.554 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~---~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|++.+|+.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++...++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 79999999999999999999999999999999999998765444
Q ss_pred c
Q 031613 78 K 78 (156)
Q Consensus 78 ~ 78 (156)
.
T Consensus 81 ~ 81 (95)
T 1uel_A 81 S 81 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=128.03 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=122.71 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999875
No 35
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.72 E-value=5.2e-22 Score=128.38 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~g 75 (156)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|+++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999886
No 36
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.82 E-value=2.6e-20 Score=140.49 Aligned_cols=79 Identities=91% Similarity=1.248 Sum_probs=76.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k 79 (156)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+++++||++-
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQT 184 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999753
No 37
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.82 E-value=2.2e-20 Score=129.67 Aligned_cols=78 Identities=32% Similarity=0.458 Sum_probs=74.8
Q ss_pred CEEEEEeC---CCCEEEEEecC-CCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~---~g~~~~l~V~~-~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+++ +|+++.++|++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 78999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 031613 77 AK 78 (156)
Q Consensus 77 ~~ 78 (156)
++
T Consensus 108 k~ 109 (111)
T 1we6_A 108 PS 109 (111)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 38
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2.2e-20 Score=127.38 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
|+|+|+++.|+++.++|++++||.+||++|++.+|+|+++|+|+|.|++|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=120.20 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|+..+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999876
No 40
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-19 Score=127.08 Aligned_cols=78 Identities=90% Similarity=1.256 Sum_probs=75.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
++|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999964
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.81 E-value=1.5e-19 Score=119.07 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~---~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|++.+|+++.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 789999999999999999999999999999998 8999999999999999999999999999999999998753
No 42
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.81 E-value=1.7e-21 Score=138.60 Aligned_cols=78 Identities=95% Similarity=1.287 Sum_probs=1.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++++||..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999975
No 43
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6e-20 Score=126.60 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeec
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~ 74 (156)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998743
No 44
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=128.50 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHH------HhCCC--CCceEEecCCeeccCCCcccccccCCCC--EEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~------~~gip--~~~qrL~~~G~~L~d~~tL~~~gi~~~s--tI~l~ 70 (156)
|+|+|++++|++++++|++++||++||++|++ .+++| +++|+|+|+|++|+|+.+|++|+|++++ +|||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 67884 8999999999999999999999999766 78999
Q ss_pred EeecCCccc
Q 031613 71 LRLRGGAKK 79 (156)
Q Consensus 71 ~~~~gg~~k 79 (156)
+++.++.+.
T Consensus 98 ~r~~~~~~~ 106 (125)
T 2gow_A 98 ARETLPEPN 106 (125)
T ss_dssp ECSCCSSSS
T ss_pred ecCCCCccc
Confidence 999887654
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=4.5e-20 Score=124.65 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=73.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|+.. |+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++||+.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGPS 94 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCCC
Confidence 78999998 899999999999999999999999999999999999999999999999999999999999999998863
No 46
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.81 E-value=1.2e-19 Score=126.77 Aligned_cols=79 Identities=28% Similarity=0.558 Sum_probs=73.2
Q ss_pred CEEEEEeCC----------CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~----------g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
++|.|+.++ |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 467787753 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCccc
Q 031613 71 LRLRGGAKK 79 (156)
Q Consensus 71 ~~~~gg~~k 79 (156)
++++||+++
T Consensus 106 ~rl~GGk~~ 114 (115)
T 1we7_A 106 LKERSGPSS 114 (115)
T ss_dssp ECCCSCCSC
T ss_pred EEcCCCCCC
Confidence 999999754
No 47
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.80 E-value=2.6e-19 Score=115.68 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|++ +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 8999999999999999999999999999999999999999999999999999999999999865
No 48
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.4e-19 Score=123.58 Aligned_cols=76 Identities=36% Similarity=0.483 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++++++.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999998886 78999999999999999999999999999999999999999999999999999999999988875
No 49
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.80 E-value=1.2e-19 Score=126.96 Aligned_cols=76 Identities=28% Similarity=0.428 Sum_probs=70.7
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccC-------CCCEEEEEEe
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~-------~~stI~l~~~ 72 (156)
|+++|+...++ ++.++|++++||.+||++|++.+|||+++|||+|+|++|+|+.+|++|||+ ++++|+|+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888877776 689999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCc
Q 031613 73 LRGGA 77 (156)
Q Consensus 73 ~~gg~ 77 (156)
.||.
T Consensus 81 -~~g~ 84 (118)
T 2fnj_B 81 -ADDT 84 (118)
T ss_dssp -SSSC
T ss_pred -CCCc
Confidence 6664
No 50
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=99.80 E-value=2.5e-21 Score=118.27 Aligned_cols=49 Identities=41% Similarity=0.923 Sum_probs=45.3
Q ss_pred eeEeeeEEEcCCCeEEEeeccCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 100 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 100 ~~~l~~y~vd~~g~~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
+++|+||+||+ |+|.++++.|| +||+|+|||.|+||++||+||||++.+
T Consensus 1 m~~~~~y~v~~-gki~~~~~fCP--kCG~~~~ma~~~dr~~C~kCgyt~~~~ 49 (55)
T 2k4x_A 1 MQKRELYEIAD-GKLVRKHRFCP--RCGPGVFLAEHADRYSCGRCGYTEFKK 49 (55)
T ss_dssp CCCCCCCCCCC-CCCCCSSCCCT--TTTTTCCCEECSSEEECTTTCCCEECC
T ss_pred CceEEEEEEcC-CEEEEccccCc--CCCCceeEeccCCEEECCCCCCEEEeC
Confidence 46899999996 99999999999 899999999999999999999999443
No 51
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.80 E-value=1.4e-20 Score=112.74 Aligned_cols=46 Identities=50% Similarity=1.014 Sum_probs=43.5
Q ss_pred EeeeEEEcCCCeEEEeeccCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 102 VLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 102 ~l~~y~vd~~g~~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
+|+||+|| ||+|+++++.|| +||+|+|||.|.+|++||+||+|+ |+
T Consensus 4 ~l~~y~v~-~~kv~~~~k~CP--~CG~~~fm~~~~~R~~C~kCG~t~-~~ 49 (50)
T 3j20_Y 4 KWKLYEIK-DGKVIRKNKFCP--RCGPGVFMADHGDRWACGKCGYTE-WK 49 (50)
T ss_dssp CCCCCEEC-SSCEECSSEECS--SSCSSCEEEECSSEEECSSSCCEE-EC
T ss_pred ceeEEEEE-CCEEEEecccCC--CCCCceEEecCCCeEECCCCCCEE-EC
Confidence 58999999 899999999999 899999999999999999999999 54
No 52
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=1.9e-19 Score=122.58 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEE--EecCCCcHHHHHHHH-HHHhCCCCCceEEecCCeeccCCCccccccc-CCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l--~V~~~~TV~~LK~~I-~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi-~~~stI~l~~~ 72 (156)
|+|+|++++|+.+++ +|++++||.+||++| ++..|+|+++|+|+|+|++|+|+.+|++|+| ++|++|+|+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 789999999997766 667999999999999 8888999999999999999999999999999 99999999975
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.5e-19 Score=126.24 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k 79 (156)
|+|+|+.. |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++++.||+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~~ 110 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSSS 110 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-------
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCCC
Confidence 78999998 8999999999999999999999999999999999999999999999999999999999999999988753
No 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=7.9e-20 Score=125.82 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCC---------------CceEEecCCeecc-CCCcccccccCCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQKE 64 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~---------------~~qrL~~~G~~L~-d~~tL~~~gi~~~ 64 (156)
|+|+|+.++|++++|+|++++||.+||++|++.+++|+ ++|+|+|+|+.|. |+.+|++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999988 3579999999996 6699999999999
Q ss_pred CEEEEEEeecCC
Q 031613 65 STLHLVLRLRGG 76 (156)
Q Consensus 65 stI~l~~~~~gg 76 (156)
++|+++.+++|.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999998875
No 55
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.9e-19 Score=121.80 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=68.5
Q ss_pred EEEEEeCC----CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 2 ~I~Vk~~~----g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
.|.|+..+ ++.++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++| ++++++|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 36677666 6799999999999999999999999999999999999999999999999999999999 777777764
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=3e-19 Score=122.18 Aligned_cols=79 Identities=19% Similarity=0.369 Sum_probs=73.4
Q ss_pred CEEEEEeCCC----CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCC-CcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g----~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~-~tL~~~gi~~~stI~l~~~~~g 75 (156)
|+|+|+..++ +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|+++++|+|+.+++|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999754 7999999999999999999999999999999999999999987 6999999999999999999998
Q ss_pred Cccc
Q 031613 76 GAKK 79 (156)
Q Consensus 76 g~~k 79 (156)
|...
T Consensus 88 g~~~ 91 (102)
T 1v5o_A 88 GLRT 91 (102)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8643
No 57
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.79 E-value=4.7e-19 Score=123.74 Aligned_cols=73 Identities=30% Similarity=0.450 Sum_probs=70.0
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCC-------CCEEEEEEe
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~-------~stI~l~~~ 72 (156)
|.|||+...++ ++.+++.+++||.+||++|+..+|+|+++|||+|+|+.|+|+.+|++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78999888777 8889999999999999999999999999999999999999999999999999 999999999
Q ss_pred e
Q 031613 73 L 73 (156)
Q Consensus 73 ~ 73 (156)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.4e-19 Score=122.04 Aligned_cols=77 Identities=35% Similarity=0.471 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|++++.||..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM 94 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence 78999998875 789999999999999999999999999999999999999999999999999999999999998865
No 59
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=119.73 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~g 75 (156)
|+|+|+.. |+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++++..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 889999999999999999999999999999999999999999999999999999999999987654
No 60
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=4.6e-19 Score=122.05 Aligned_cols=76 Identities=28% Similarity=0.492 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++...+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999876544
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=131.16 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999997
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.33 Aligned_cols=78 Identities=94% Similarity=1.292 Sum_probs=75.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.||..
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~ 98 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 98 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999988753
No 63
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1.1e-18 Score=122.05 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHH------HhCC--CCCceEEecCCeeccCCCcccccccCCC--CEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~------~~gi--p~~~qrL~~~G~~L~d~~tL~~~gi~~~--stI~l~ 70 (156)
|+|+|++++|++++++|++++||.+||++|++ .+++ |+++|||+|.|++|+|+.+|++|+|+.+ ++|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 5575 6999999999999999999999999766 578888
Q ss_pred EeecCCcc
Q 031613 71 LRLRGGAK 78 (156)
Q Consensus 71 ~~~~gg~~ 78 (156)
+++.+..+
T Consensus 97 lr~~~~~~ 104 (116)
T 1wgh_A 97 ARETLPEP 104 (116)
T ss_dssp ECSSCSSS
T ss_pred ccCCCCCC
Confidence 88776553
No 64
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.77 E-value=1.7e-18 Score=124.94 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.76 E-value=4.1e-18 Score=124.58 Aligned_cols=76 Identities=32% Similarity=0.399 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe-c-CCeeccCCCcccccccCCCCEEEEEEe-ecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~-~-~G~~L~d~~tL~~~gi~~~stI~l~~~-~~gg 76 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+|+++ +.++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999998 3544
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.75 E-value=6.3e-18 Score=121.96 Aligned_cols=77 Identities=95% Similarity=1.302 Sum_probs=74.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|+.++.++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~ 77 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999887763
No 67
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.74 E-value=1.1e-17 Score=114.96 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=67.5
Q ss_pred CEEEEEeCCC--CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCccccccc-CCCCEEEEEEe
Q 031613 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g--~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi-~~~stI~l~~~ 72 (156)
|+|+|+...+ .+++++|+|++||++||++|++++|||++.|||+|+|+.++|+.+|++||| ++|+++||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999875 589999999999999999999999999999999999999999999999999 69999999874
No 68
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=116.76 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=64.4
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHHH-hCCC-CCceEEecCCeeccCCCccccc--ccCCCCEEEEE
Q 031613 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~-~gip-~~~qrL~~~G~~L~d~~tL~~~--gi~~~stI~l~ 70 (156)
|+|+||+++|+ +++++|++++||.+||++|++. .|+| +++|||+|+|++|+|+.+|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999888 6789999999999999999986 5666 4999999999999999999999 99999999984
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.6e-18 Score=118.48 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|++ +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678887 8899999999999999999999999999999999999999999999999999999999999864
No 70
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.5e-17 Score=110.25 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.5
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
++++.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4566778999999999999999999999999999999999999999999999999999999999998764
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.72 E-value=9.2e-18 Score=112.30 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEe---cCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l-~V~~~~TV~~LK~~I~~~~gip~~~qrL~---~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|+. .|+++.+ +|++++||.+||++|++.+|+|+++|+|+ |+|++|+|+.+|++|+|+++++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 7899996 7889999 99999999999999999999999999999 9999999999999999999999999754
No 72
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=111.81 Aligned_cols=74 Identities=27% Similarity=0.392 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCC-CcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~-~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|+..+|+.+.++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ .+|++|+|++|++|||+++..+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~~ 82 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAA 82 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCCC
Confidence 7899999999999999999999999999999987 8899999999999999 999999999999999998765544
No 73
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.3e-17 Score=113.75 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---CEEEEEecC---------CCcHHHHHHHHHHHh--CCCCCc-eEEecCCeeccCCCcccccccCCCC
Q 031613 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (156)
Q Consensus 1 M~I~Vk~~~g---~~~~l~V~~---------~~TV~~LK~~I~~~~--gip~~~-qrL~~~G~~L~d~~tL~~~gi~~~s 65 (156)
|+|+|+..++ +.+.++|++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|+|++++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999988 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEeec
Q 031613 66 TLHLVLRLR 74 (156)
Q Consensus 66 tI~l~~~~~ 74 (156)
+|+|+++..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999998754
No 74
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=9.4e-18 Score=113.66 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEE-EEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~-~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|+. .|+++ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|+++++|+|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899995 68899 6999999999999999999999999999999999999999 9999999999999997543
No 75
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.9e-17 Score=108.87 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCEEEEEecCC-----CcHHHHHHHHHHHhCCCCCceEEecCCeeccC-CCcccccccCCCCEEEEEEee
Q 031613 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~-----~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d-~~tL~~~gi~~~stI~l~~~~ 73 (156)
|+|+|++ .++.+.++|+++ +||.+||++|++.+|+|+++|+|+|.|+.|+| +.+|++|+|+++++|+|+.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899998 588999999995 99999999999999999999999999999998 568999999999999998643
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=3.1e-17 Score=110.82 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=64.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|+. .++++.++|++++||.+||++|++.+|+|+++|+|+|.|++|+ +.+|++|+|+++++|+|+..
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 6788984 6889999999999999999999999999999999999999995 45999999999999999754
No 77
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=111.40 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=66.7
Q ss_pred EEEEE-eCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 2 ~I~Vk-~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
.|.|+ ..+++.+.++++++.||.+||+.++...++|++.|+|+|+|+.|.|+.+|++|||++|.+|||+++.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 45555 4567899999999999999999999999999999999999999999999999999999999999875
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.68 E-value=1e-16 Score=128.73 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeec
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~ 74 (156)
|+|+|+.++|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++|+|+++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998864
No 79
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=110.56 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEec--CCeeccCCCcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~--~G~~L~d~~tL~~~gi~~~stI~l~~~~~g 75 (156)
|++++..+.|+++.++|++++||.+||++|++.+||||++|+|++ .|+ |+|+.+|++|+|++|++|||+++..-
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 677788889999999999999999999999999999999999986 555 99999999999999999999887543
No 80
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2e-16 Score=106.97 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=62.6
Q ss_pred CEEEEEeCCCC--EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecC--Ce---ec-cCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~--~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~--G~---~L-~d~~tL~~~gi~~~stI~l~ 70 (156)
+.|+|++..++ .++++|++++||++||++|++.+|||+++|||+|. |+ .| +|+.+|++|+|++|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788876654 88999999999999999999999999999999997 45 44 89999999999999999986
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.6e-17 Score=107.88 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.2
Q ss_pred CEEEEEeCCCCEE--EE-EecCCCcHHHHHHHHHHH-hCCCCCceEEecC--CeeccCCCcccccccCCCCEEEE
Q 031613 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (156)
Q Consensus 1 M~I~Vk~~~g~~~--~l-~V~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--G~~L~d~~tL~~~gi~~~stI~l 69 (156)
|+|+|+++.|+.+ .+ +|++++||.+||++|++. .|+||++|+|+|. |++|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7999999988754 58 999999999999999995 8999999999976 99999999999999999999876
No 82
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6.2e-16 Score=104.36 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|+.|.++.|+++|+++++++|+|++++.||.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999995
No 83
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.65 E-value=2.1e-16 Score=105.02 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=62.5
Q ss_pred EEEEEeC--CCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEec-------CCeeccCCCcccccccCCCCEEEEEEe
Q 031613 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 2 ~I~Vk~~--~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~-------~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
.|.|... ..+.+++.+++++||++||++|+..+|+||++|+|+| .|+.|+|+.+|++|+|++|++|||+-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4566543 3457889999999999999999999999999999996 478899999999999999999999864
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=6e-16 Score=105.00 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=61.9
Q ss_pred EEEEEeCCC--CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCC---ee----ccCCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g--~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G---~~----L~d~~tL~~~gi~~~stI~l~~ 71 (156)
.|+|.+... ..++++|++++||++||++|+..+||||++|||+|.| +. ++|+.+|++|+|++|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 577776544 4789999999999999999999999999999999987 33 4889999999999999999874
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.62 E-value=7.2e-16 Score=126.70 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=72.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHH---HhCCCCCceEEecCCeeccCCCcccccccCCCCEE-EEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~---~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI-~l~~~~~gg 76 (156)
|+|+||+++|+++.|+|++++||.+||.+|+. .+|||+++|+|+|.|+.|+|+.+|++|+|+++++| +|+.++.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999 57799999999999999999999999999999998 777777776
Q ss_pred cc
Q 031613 77 AK 78 (156)
Q Consensus 77 ~~ 78 (156)
..
T Consensus 88 ~~ 89 (368)
T 1oqy_A 88 QG 89 (368)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=6.1e-16 Score=106.63 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.2
Q ss_pred CEEEEEeCCCCEEEEEec-CCCcHHHHHHHHHHHhCCCCCceEEecCCe-----------e----ccCCCcccccccCCC
Q 031613 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G~-----------~----L~d~~tL~~~gi~~~ 64 (156)
|+|+||+.+|+. .++|+ +++||.+||++|++.+++|+++|+|++.|+ . ++|+.+|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999865 78999 999999999999999999999999999888 4 578899999999999
Q ss_pred CEEEEEEe
Q 031613 65 STLHLVLR 72 (156)
Q Consensus 65 stI~l~~~ 72 (156)
++|||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998865
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=4.9e-15 Score=99.38 Aligned_cols=78 Identities=17% Similarity=0.384 Sum_probs=74.8
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++++.+.||.-
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999864
No 88
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.4e-15 Score=101.40 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.2
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCC---ee----ccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G---~~----L~d~~tL~~~gi~~~stI~l~~ 71 (156)
+.|+|++.... .++++|++++||++||++|++.+|+|+++|+|+|.| +. ++|+.+|++|||++|++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 35778775443 688999999999999999999999999999999976 43 5899999999999999999874
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.57 E-value=1.3e-14 Score=97.66 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|.|++.+|+.+.+.|.+++++..|+..++++.|+++++++|+|+|+.|.++.|+++|++.+|++|++++++.||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5788998899999999999999999999999999999999999999999999999999999999999999999987
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.57 E-value=9.2e-15 Score=102.93 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=62.4
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCC---e---e-ccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G---~---~-L~d~~tL~~~gi~~~stI~l~~ 71 (156)
|.|+|++..+. .++++|++++||++||++|+..+|||+++|||+|.| + . ++|+.+|++|||++|++|||+.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 46778776543 688999999999999999999999999999999977 3 2 4789999999999999999986
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.55 E-value=4.8e-15 Score=98.11 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.0
Q ss_pred CEEEEEeCCCCEEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEecC--Ceecc---CCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~-V~~~~TV~~LK~~I~~~~gip~~~qrL~~~--G~~L~---d~~tL~~~gi~~~stI~l~~~ 72 (156)
|+|+|++.+|+. .++ +++++||++||+.|++.+|+|+++|+|+|+ ++.|+ |+.+|++|||.+|++|+|...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999964 477 999999999999999999999999999976 47774 678999999999999988743
No 92
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2e-14 Score=98.63 Aligned_cols=78 Identities=15% Similarity=0.368 Sum_probs=74.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|.|+..+|+.+.+.|.+++++..|+..++++.|+++++++|+|+|+.|.++.|+++|++.++++|+|++++.||..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 578999989999999999999999999999999999999999999999999999999999999999999999999864
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.51 E-value=7.7e-14 Score=89.46 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|++++++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.51 E-value=5.6e-14 Score=96.62 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|.|+. +|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|.++|++.++++|+|++++.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788998 89999999999999999999999999999999999999999999999999999999999999999887
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.50 E-value=3.4e-14 Score=98.37 Aligned_cols=77 Identities=16% Similarity=0.410 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|.|++.+|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|+++|++.++++|+|++.+.||-
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999985
No 96
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.50 E-value=3.7e-14 Score=114.68 Aligned_cols=73 Identities=22% Similarity=0.440 Sum_probs=65.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe---cCCeeccCCCcccccccCCCCEEEEEEeec
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~---~~G~~L~d~~tL~~~gi~~~stI~l~~~~~ 74 (156)
|.|+|+. +|+++.++|++++||++||++|++.+||||++|+|+ |+|++|+|+.+|++|+|++|++|+|+....
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 5788886 789999999999999999999999999999999999 899999999999999999999999986543
No 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.45 E-value=4.7e-13 Score=87.32 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.0
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
|+|.|++.+|+ .+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67899999996 89999999999999999999999999999999999999999999999999999999985
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.9e-12 Score=87.36 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred EEEEEe---CCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCC-------eec-cCCCcccccccCCCCEEEEE
Q 031613 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 2 ~I~Vk~---~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G-------~~L-~d~~tL~~~gi~~~stI~l~ 70 (156)
.|+|++ .+++.+.+.+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|+.+|++|+|.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 566765 3677899999999999999999999999999999999763 235 57789999999999999998
Q ss_pred Ee
Q 031613 71 LR 72 (156)
Q Consensus 71 ~~ 72 (156)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=6.3e-11 Score=82.30 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~g 75 (156)
|+|.|+..+|..+.+.|.+++++..|+...+++.|++++.++++|+|..|.++.|..++++.+|++|+|.+...|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 467888888999999999999999999999999999999999999999999999999999999999999987654
No 100
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.2e-10 Score=88.18 Aligned_cols=77 Identities=13% Similarity=0.311 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
++|.|+ .+|..+.+.|.+++++..|+...+++.|++++++|++|+|+.|.++.|..++++.+|++|++++.+.||.+
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 467886 48889999999999999999999999999999999999999999999999999999999999999999875
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.5e-10 Score=86.78 Aligned_cols=77 Identities=12% Similarity=0.285 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|.|+ .+|..+.+.|.+++++..|+...+++.|+++.+++++|+|+.|.++.|..++++.+|++|+|++.+.||..
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~~ 134 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLP 134 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTGG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 467776 48889999999999999999999999999999999999999999999999999999999999999999975
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.98 E-value=3.7e-10 Score=73.68 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCee---c--cCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~---L--~d~~tL~~~gi~~~stI~l~ 70 (156)
|.|.||+.+| ++.+++++++|+.+|+++|++.++++++.|.|.++-.+ | .++.+|+++||+.|++|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998877 77788999999999999999999999988877654443 3 46789999999999999875
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.97 E-value=5.9e-09 Score=67.01 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.9
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
.+.+++.....+.+.|.++++|.+|-..-..+.+||++ .++|+|.|..|+.+.++.+|++.+++.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45677777778999999999999999999999999999 99999999999999999999999999999875
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.91 E-value=1.5e-10 Score=87.80 Aligned_cols=77 Identities=13% Similarity=0.314 Sum_probs=2.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
|+|.| ..+|+.+.+.|.+++++..|++..+++.|++++++|++|+|+.|.++.|.+++++++|++|++++...||..
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp ---------------------------------------------------------------------------CCC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 56778 668889999999999999999999999999999999999999999999999999999999999999999964
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.70 E-value=9.9e-08 Score=64.29 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.6
Q ss_pred CEEEEEeCCCC-EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~-~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
+.|.|+..+|. .+.+.|..++++..|....+++.|++++..+++|+|..|.++.|..++++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777884 88999999999999999999999999999999999999999999999999999999875
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.59 E-value=1.5e-07 Score=71.63 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
.|.|+. +++.+.+.+..++++..|+...+++.|+++++++++|+|+.+.++.+..++.+.++++|.+.....||..
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t 98 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGST 98 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccccc
Confidence 566765 6778899999999999999999999999999999999999999999999999999999999999998753
No 107
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.53 E-value=5.2e-07 Score=60.30 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=50.4
Q ss_pred EEEEeC-CCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeecc--CCCcccccccC-CCCEEEEE
Q 031613 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQ-KESTLHLV 70 (156)
Q Consensus 3 I~Vk~~-~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~--d~~tL~~~gi~-~~stI~l~ 70 (156)
|.|=++ .+..+.+.+.+++||..||++|++++|||+++|+|+|.|+.|. .......|.-. ...-|.|.
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 344344 4568899999999999999999999999999999999998764 44444555432 23345444
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.50 E-value=1.3e-08 Score=83.08 Aligned_cols=77 Identities=13% Similarity=0.339 Sum_probs=1.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
++|.|+. +|+...+.|..++++..|+...+++.|+++++++++|+|+.|.++.|.+++++++|++|++.....||-+
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ----------------------------------------------------------------------------CH
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 3567766 5778889999999999999999999999999999999999999999999999999999999999999975
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.42 E-value=1.6e-06 Score=57.80 Aligned_cols=70 Identities=14% Similarity=0.309 Sum_probs=65.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
+.|.|+. +|....+.+-.++.+..|....+++.|+++++.+++|+|..+.++.|-.+++++++++|.+++
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3577774 688999999999999999999999999999999999999999999999999999999999875
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.37 E-value=1.7e-06 Score=57.13 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
|.|+|-..+++...+.|.|++++.++-+...+++|+.+++-.|.|+++.|+-+..+.-.||.+|+.+.|+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 67889889999999999999999999999999999999999999999999999999999999999999874
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.26 E-value=2.3e-06 Score=60.22 Aligned_cols=69 Identities=28% Similarity=0.402 Sum_probs=57.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC-------------------------------------ceEEe
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-------------------------------------~qrL~ 44 (156)
.|.|+.++|+..++.|+.+.||.+++..|....||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999854 23332
Q ss_pred c--CCeeccCCCcccccccCCCCEEEEE
Q 031613 45 F--AGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 45 ~--~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
. ...-|+++.+|.++||.++++|.|.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1 1245788899999999999998764
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.25 E-value=1.2e-07 Score=78.03 Aligned_cols=77 Identities=12% Similarity=0.306 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCccc
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKK 79 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~k 79 (156)
.|.|+. ++....+.|..++++..|+...+++.|+++.+++++|+|+.|.++.|..++++.+|++|++++...||..-
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~ 108 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENL 108 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccccc
Confidence 455655 56778899999999999999999999999999999999999999999999999999999999999999753
No 113
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.09 E-value=1.6e-05 Score=51.66 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=58.4
Q ss_pred EEEEEe--CCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC-----ceEEecCCeeccCCCcccccccCCCCEEEE
Q 031613 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (156)
Q Consensus 2 ~I~Vk~--~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-----~qrL~~~G~~L~d~~tL~~~gi~~~stI~l 69 (156)
.|+|.. ..++.+.++++...||..|.+.+.+..+++.. ..++.-.+..|.++..|++|+|.+|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456654 47899999999999999999999999987652 457778899999999999999999999875
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.07 E-value=3.2e-05 Score=50.26 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=58.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe--cCCeecc---CCCcccccccCCCCEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L~---d~~tL~~~gi~~~stI~l~ 70 (156)
.|.||.++|+.+.-.++.++||.+|.+.|.. .+.++....|+ |-.+.|. .+.+|.++|+.+.++|.|.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999998899999999999999988 66777888887 6677783 4689999999999998875
No 115
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=97.79 E-value=6.1e-06 Score=54.81 Aligned_cols=27 Identities=33% Similarity=0.965 Sum_probs=24.6
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
.+..|| +||.++| |.++.+||+|||+.
T Consensus 15 tH~lCr--RCG~~sf---H~qK~~CgkCGYpa 41 (97)
T 2zkr_2 15 THTLCR--RCGSKAY---HLQKSTCGKCGYPA 41 (97)
T ss_dssp CEECCT--TTCSSCE---ETTSCCBTTTCTTT
T ss_pred CCCcCC--CCCCccC---cCccccCcccCCch
Confidence 467999 9999998 99999999999975
No 116
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.78 E-value=0.0002 Score=48.85 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=58.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe--cCCeecc---CCCcccccccCCCCEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L~---d~~tL~~~gi~~~stI~l~ 70 (156)
.|.||.++|..+.-.++.++||.+|.+.|....+.+.....|+ |-.+.|. .+.+|.++|+.+.++|++.
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 5889999999999999999999999999999877776777776 6677775 3579999999988777665
No 117
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.67 E-value=0.0002 Score=49.94 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=58.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe--cCCeec--c-CCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L--~-d~~tL~~~gi~~~stI~l~~ 71 (156)
.|.||.++|..+.-.+..++||.+|.+.|... +.++....|+ |-.+.| + .+.+|.++|+.+..+|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999999999999999999999999886 7777778887 677888 3 36899999999888887653
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.30 E-value=0.0012 Score=44.86 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=57.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe--cCCeecc--CCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L~--d~~tL~~~gi~~~stI~l~~ 71 (156)
+|.||..+|+.+.-.+..++||.+|.+.|... +..+....|+ |-.+.|. .+.+|.++||.+..+|.|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999999888999999999999999865 5556667776 6677775 46899999999888887653
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.21 E-value=0.0013 Score=45.92 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=53.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHh-CCCCCceEEe--cCCeeccC-CCcccccccCCCCEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~-gip~~~qrL~--~~G~~L~d-~~tL~~~gi~~~stI 67 (156)
.|.||..+|..+.-.++.++||.+|.+.|.... +.+.....|+ |-.+.|+| +.+|.++|+.+...|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999999999999999999999998863 3445567776 77888875 589999999874433
No 120
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.09 E-value=0.002 Score=40.80 Aligned_cols=66 Identities=14% Similarity=0.367 Sum_probs=50.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|+........+++++..||++|-+. .|+|++..-+..||+.+..+.. .+|++|.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEEEeeccc
Confidence 89999987555667899999999998754 7999988877799998876552 248899866444444
No 121
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.02 E-value=0.0077 Score=37.44 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=48.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+|.... ....++++...||.+|.+.+ ++++....+..+|..+..+. -+++|+.|.++-...||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 667776432 24567888889999999876 56777777789999987665 46789999887665554
No 122
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.0027 Score=41.26 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=54.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEec---CCeeccCCCcccccccCC
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~---~G~~L~d~~tL~~~gi~~ 63 (156)
++.|.....+...+.|+|..++++|--.|.++..+.|+...|.- .+..|+-+.+|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 56677777778889999999999999999999999999988874 456889999999999985
No 123
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.51 E-value=0.022 Score=37.57 Aligned_cols=71 Identities=13% Similarity=0.298 Sum_probs=48.4
Q ss_pred CEEEEEeCC------C-CEEEEEecCCCcHHHHHHHHHHHhC-C----------CCCceEEecCCeeccCCCcccccccC
Q 031613 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (156)
Q Consensus 1 M~I~Vk~~~------g-~~~~l~V~~~~TV~~LK~~I~~~~g-i----------p~~~qrL~~~G~~L~d~~tL~~~gi~ 62 (156)
|+|+|+.+. | ....++++...||.+|.+.+..... + ......+..||+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888764 4 4677888888999999999987641 1 1233456678877754 44577
Q ss_pred CCCEEEEEEeecCC
Q 031613 63 KESTLHLVLRLRGG 76 (156)
Q Consensus 63 ~~stI~l~~~~~gg 76 (156)
+|+.|.++....||
T Consensus 85 dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFPPVSGG 98 (98)
T ss_dssp TTCEEEEESCC---
T ss_pred CCCEEEEECCCCCC
Confidence 89999887665554
No 124
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.46 E-value=0.012 Score=36.84 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=48.2
Q ss_pred CEEEEEeCCC-CEEEEEecCCCcHHHHHHHHHHHhCCCC--CceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g-~~~~l~V~~~~TV~~LK~~I~~~~gip~--~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|.|+|+.+.. +...+++ ...||.+|.+.+....++.. ....+.-||+.+.+ .+.-+++|++|.+.....||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 8899988743 1234666 66899999999986543322 34556677777432 24457789999988777665
No 125
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.40 E-value=0.012 Score=44.58 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=53.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEe--c-CC--eeccC-CCcccccccCCCCEEEEEEeecCC
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~-~qrL~--~-~G--~~L~d-~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
.+++.++..+||.+|+..+...++|+++ +.||. + .+ ..|+| +.+|.+++|.++..|.|-++...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999997 68886 2 22 35665 579999999999999999887665
No 126
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.35 E-value=0.0095 Score=38.87 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCCEEEEEecCC-CcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 9 ~g~~~~l~V~~~-~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
+|+. ++++.. .||.+|.+.+ ++++....+..+|..+..+ ...+.-|++|+.|.++-...||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 4543 445666 8999998876 5667777777999987543 2344567899999887665554
No 127
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.23 E-value=0.028 Score=42.92 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=54.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEec-C----CeeccC-CCcccccccCCCCEEEEEEeecCCc
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~-~qrL~~-~----G~~L~d-~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
.+++.++..+||.+|+..+...++|+++ +.||.. . ...|.| +.+|.+++|.++..|.+-++...|.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~ 225 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGT 225 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 3456789999999999999999999997 688873 3 236665 5899999999999999998876653
No 128
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.14 E-value=0.041 Score=37.44 Aligned_cols=62 Identities=37% Similarity=0.455 Sum_probs=43.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHh--CCCC------CceEEec----CCeeccCC-------------CcccccccCCC
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGKQLEDG-------------RTLADYNIQKE 64 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~qrL~~----~G~~L~d~-------------~tL~~~gi~~~ 64 (156)
+..+.+.|-..+||.++|++|-+.. |+|. +++.|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567888889999999999997654 4543 4555654 34566542 46999999999
Q ss_pred CEEEEEE
Q 031613 65 STLHLVL 71 (156)
Q Consensus 65 stI~l~~ 71 (156)
++|.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 129
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=95.99 E-value=0.0088 Score=38.16 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=49.0
Q ss_pred CEEEEEeCCCCEEEEEec--CCCcHHHHHHHHHHHhCCC-CCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~--~~~TV~~LK~~I~~~~gip-~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+| +|+.+ +++ ...||.+|-+.+ +++ +...-+..+|..+..+ ...+.-|++|+.|.++-...||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 67766 46644 455 678999998754 677 7777778999988654 25566778999999876666665
Q ss_pred c
Q 031613 78 K 78 (156)
Q Consensus 78 ~ 78 (156)
-
T Consensus 71 ~ 71 (78)
T 2k5p_A 71 L 71 (78)
T ss_dssp C
T ss_pred c
Confidence 3
No 130
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.84 E-value=0.045 Score=35.36 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=54.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEee
Q 031613 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (156)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~ 73 (156)
+...++-..++..||..++.+.+++.+.-.+...+..|+++.+|.+-+++-...|.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 4456778899999999999999999999888888888999999999999988888888765
No 131
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.82 E-value=0.083 Score=33.86 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=44.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhC-C-----C-----CCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~g-i-----p-----~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
....++++...||.+|.+.+..... + . .....+.-||+....+ .-|++|+.|.+.....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCCEEEEECCCCCC
Confidence 5678888888999999999987652 1 0 0124666788877653 456789999988777765
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=95.79 E-value=0.015 Score=35.59 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=45.4
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+|+| +|+. ++++...||.+|.+.+ ++++....+..+|..+..+ ...+.-+++|+.|.++-...||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 56666 4654 4556778999999877 5667777777899887532 1223456789999887665554
No 133
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=95.72 E-value=0.06 Score=34.87 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=48.0
Q ss_pred CEEEEEeCC------CCEEEEEecCCCcHHHHHHHHHHHhC-C-----C-------CCceEEecCCeeccCCCccccccc
Q 031613 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (156)
Q Consensus 1 M~I~Vk~~~------g~~~~l~V~~~~TV~~LK~~I~~~~g-i-----p-------~~~qrL~~~G~~L~d~~tL~~~gi 61 (156)
|+|+|+.+. |....+++ +..||.+|.+.+..+.. + . .....+..||+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 778887653 33234664 46899999999987752 0 1 0135666788876543222 4567
Q ss_pred CCCCEEEEEEeecCC
Q 031613 62 QKESTLHLVLRLRGG 76 (156)
Q Consensus 62 ~~~stI~l~~~~~gg 76 (156)
++|++|.++....||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 899999988777776
No 134
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.50 E-value=0.017 Score=36.25 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=46.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
|+|+| +|+.+.+ ...||.+|-+. .++++...-+..+|..+..+ ...+.-|++|+.|.++-...||.
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 66666 4665544 56899998764 57888878888999987533 24455677899999876666664
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.34 E-value=0.04 Score=35.60 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=38.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCe
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~ 48 (156)
.|.|... -++.|.|++..+..+|.++|.++.+++++...|.|...
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4555543 68999999999999999999999999999999998664
No 136
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.32 E-value=0.16 Score=35.32 Aligned_cols=64 Identities=27% Similarity=0.387 Sum_probs=46.7
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHh--CCCC------CceEEec----CCe-eccCC-------------CcccccccC
Q 031613 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQ 62 (156)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~qrL~~----~G~-~L~d~-------------~tL~~~gi~ 62 (156)
++..+.+.|-..+||.++|++|-+.. ++|. +++.|-+ .|+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999997664 4543 4566664 233 36542 469999999
Q ss_pred CCCEEEEEEe
Q 031613 63 KESTLHLVLR 72 (156)
Q Consensus 63 ~~stI~l~~~ 72 (156)
+|++|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 137
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.05 E-value=0.12 Score=41.64 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=57.7
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhC----CCCCceEEec------CCeeccCCCcccccccCCCCEEEEE-
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLV- 70 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~g----ip~~~qrL~~------~G~~L~d~~tL~~~gi~~~stI~l~- 70 (156)
.+.|... +.+-++.+++++||.+.-..|.++.. .++++--|+. .|.=|++..+|..|++++++.|...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 4556554 66888999999999999999987764 3566667765 3344888889999999999988765
Q ss_pred ------EeecCCcc
Q 031613 71 ------LRLRGGAK 78 (156)
Q Consensus 71 ------~~~~gg~~ 78 (156)
+.+.+|..
T Consensus 84 ~~~~~~V~l~dg~~ 97 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV 97 (371)
T ss_dssp CEEEEEEECTTSCE
T ss_pred ceeEEEEECcCCCE
Confidence 55566654
No 138
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.86 E-value=0.13 Score=36.23 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=46.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh--CCCC------CceEEec----CCe-eccCC-------------CcccccccCCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~qrL~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (156)
..+.+.|-..+||.++|++|-+.. |+|- ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 468889999999999999998765 4543 3445544 343 36543 37999999999
Q ss_pred CEEEEEEe
Q 031613 65 STLHLVLR 72 (156)
Q Consensus 65 stI~l~~~ 72 (156)
++|.++.+
T Consensus 121 a~l~l~~~ 128 (138)
T 2r2o_A 121 ATVALVPC 128 (138)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 99988754
No 139
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.55 E-value=0.15 Score=34.93 Aligned_cols=62 Identities=32% Similarity=0.503 Sum_probs=44.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh--CCCC------CceEEec-CC---e-eccCC-------------CcccccccCCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 64 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~qrL~~-~G---~-~L~d~-------------~tL~~~gi~~~ 64 (156)
..+.+.|-..+||.++|++|-+.. ++|. +++.|.+ .| + .|.|. .||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 357788889999999999997654 5553 3455554 22 3 35432 46999999999
Q ss_pred CEEEEEEe
Q 031613 65 STLHLVLR 72 (156)
Q Consensus 65 stI~l~~~ 72 (156)
++|.++.+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988754
No 140
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.53 E-value=0.015 Score=34.10 Aligned_cols=26 Identities=35% Similarity=0.769 Sum_probs=21.8
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
....|| +|++- .+..-|.|.|||++.
T Consensus 13 ~k~iCp--kC~a~----~~~gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCL--RCGAT----NPWGAKKCRKCGYKR 38 (51)
T ss_dssp SEEECT--TTCCE----ECTTCSSCSSSSSCC
T ss_pred CCccCC--CCCCc----CCCCceecCCCCCcc
Confidence 357899 99864 678999999999983
No 141
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=94.30 E-value=0.47 Score=31.03 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=45.0
Q ss_pred CEEEEEeCC-------C-CEEEEEec--CCCcHHHHHHHHHHHhCCC-C--------C----ceEEecCCeeccCCCccc
Q 031613 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIP-P--------D----QQRLIFAGKQLEDGRTLA 57 (156)
Q Consensus 1 M~I~Vk~~~-------g-~~~~l~V~--~~~TV~~LK~~I~~~~gip-~--------~----~qrL~~~G~~L~d~~tL~ 57 (156)
|+|+|+.+. | ....++++ +..||.+|.+.+.++..-. + . ...+.-|+...+-... .
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-K 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-G
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-C
Confidence 567777642 3 36677777 6789999999998876311 1 0 0123344443210000 2
Q ss_pred ccccCCCCEEEEEEeecCC
Q 031613 58 DYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 58 ~~gi~~~stI~l~~~~~gg 76 (156)
+.-+++|++|.+.....||
T Consensus 81 d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 81 DYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GCBCCTTCEEEEEECTTCC
T ss_pred CcCcCCCCEEEEECCCCCC
Confidence 4567899999887766665
No 142
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=94.12 E-value=0.19 Score=34.22 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=46.0
Q ss_pred CEEEEEeCC------C--CEEEEEecC---CCcHHHHHHHHHHHhCCCCCceEEecC-Ce------eccCCC---cc--c
Q 031613 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--A 57 (156)
Q Consensus 1 M~I~Vk~~~------g--~~~~l~V~~---~~TV~~LK~~I~~~~gip~~~qrL~~~-G~------~L~d~~---tL--~ 57 (156)
|+|+|+.+. | +.+.++++. ..||.+|-+.|.+.+ |....+|+.. |. .|-++. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 578887653 3 366788883 369999999998776 1112222211 21 122222 11 2
Q ss_pred ccccCCCCEEEEEEeecCCc
Q 031613 58 DYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 58 ~~gi~~~stI~l~~~~~gg~ 77 (156)
++-|++|+.|.++..+.||.
T Consensus 90 dt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TCBCCSSEEEEEEECSCCCC
T ss_pred CcCCCCCCEEEEeCCCCCCC
Confidence 46688999999888888884
No 143
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.61 E-value=0.18 Score=31.50 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhC-----CCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~g-----ip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
...++ +...||.+|.+.+..... ++.....+..||+.... +.-+++|+.|.+.....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 55566 567899999999875531 22334567788887754 3456789999887666665
No 144
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.53 E-value=0.18 Score=30.39 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=41.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 9 ~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
+|+.+. + ...||.+|.+.+ ++++....+..+|..+..+. ..+.-+++|+.|.++-...||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEeecccC
Confidence 566554 4 568999999877 46666777778998875431 334457789999887665554
No 145
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=93.43 E-value=0.16 Score=31.48 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=42.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCce--EEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q--rL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
....++++...||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+.-...||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3566777788899999999877641 01223 677899887654 456789999887655554
No 146
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.08 E-value=0.12 Score=36.06 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEec
Q 031613 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (156)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~ 45 (156)
..+.|..++|+.+|+..|++..|+|+++|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999973
No 147
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.53 E-value=0.56 Score=30.51 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred EEEEe-CCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEecCCe
Q 031613 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 48 (156)
Q Consensus 3 I~Vk~-~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-qrL~~~G~ 48 (156)
|.||. .+|..+.+.++++.+..+|.+++.+..+++..+ ..|.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34443 467899999999999999999999999987644 67777654
No 148
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.53 E-value=1 Score=34.73 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=51.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEec---CCe--eccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-qrL~~---~G~--~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|.|.|..++| ++.+.+++++|+.+|-+.|.+..|+...+ .-|.+ +|. -|+.+..|.+.++..+....+.++
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4688888988 67899999999999999999999987533 34443 333 366677787776555555544443
No 149
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=92.38 E-value=0.71 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.291 Sum_probs=44.4
Q ss_pred CEEEEEeCC------CC-EEEEEecCCCcHHHHHHHHHHHhC-CCC---------Cce-------EEecCCeeccCCCcc
Q 031613 1 MQIFVKTLT------GK-TITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 56 (156)
Q Consensus 1 M~I~Vk~~~------g~-~~~l~V~~~~TV~~LK~~I~~~~g-ip~---------~~q-------rL~~~G~~L~d~~tL 56 (156)
|+|+|+.+. |. .+.++ ..||.+|.+.+..... +.. ... .+..||+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 678888764 32 44444 6899999999987641 111 012 5667777653221 1
Q ss_pred cccccCCCCEEEEEEeecCC
Q 031613 57 ADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 57 ~~~gi~~~stI~l~~~~~gg 76 (156)
.+.-+++|++|.++....||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23457889999887666555
No 150
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.21 E-value=1.3 Score=34.51 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=51.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEec--CCe--eccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-~qrL~~--~G~--~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
+.+.|..++| ++.+.+++++|+.+|-+.|....|+... -.-|.+ +|. -|+.+..|.+.++..+..+.+.++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3577888888 7889999999999999999999998753 334443 443 367778888876655555544443
No 151
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=92.05 E-value=0.09 Score=33.91 Aligned_cols=31 Identities=19% Similarity=0.548 Sum_probs=22.3
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
....|| .||.-.+--.-..-|.|..|+++|.
T Consensus 26 ~~y~Cp--~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECS--SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCC--CCCCcceeccCCCeEECCCCCCEec
Confidence 467899 8985333222257899999999984
No 152
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=91.38 E-value=0.099 Score=35.42 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=43.8
Q ss_pred CEEEEEeCC------CCEEEEEecC----CCcHHHHHHHHHHHhCCCCCceEEe-cCC--e------eccCCCcc-----
Q 031613 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL----- 56 (156)
Q Consensus 1 M~I~Vk~~~------g~~~~l~V~~----~~TV~~LK~~I~~~~gip~~~qrL~-~~G--~------~L~d~~tL----- 56 (156)
|+|.|+... |+...++++. ..||.+|-+.|.+... ..+-+|+ -+| . .|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 566776543 3545677773 2599999998887652 2222332 122 1 23233222
Q ss_pred cccccCCCCEEEEEEeecCCc
Q 031613 57 ADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 57 ~~~gi~~~stI~l~~~~~gg~ 77 (156)
.++-+++|++|.++..+.||-
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246689999998877777764
No 153
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=91.29 E-value=0.75 Score=29.07 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=40.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhC------C-----CCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~g------i-----p~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
.++++...||.+|.+.+..... + ......+..||+...... -.+.-+++|+.|.++....||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987641 1 013456677887765221 124457899999887655554
No 154
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=91.20 E-value=0.06 Score=33.87 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=39.5
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
.+++++..||.+|.+.+ ++++....+..+|+.+..+ .-|++|+.|.++-...||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 44667778999998765 4666666777899988765 456789999877655554
No 155
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.19 E-value=1.2 Score=30.86 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=41.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH----hCCCCC----ceEEec-CC---eeccC----------C----CcccccccCCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIF-AG---KQLED----------G----RTLADYNIQKE 64 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~----~gip~~----~qrL~~-~G---~~L~d----------~----~tL~~~gi~~~ 64 (156)
+.+.+.|-..+||.++|++|-+. .++|-+ ++.|-+ .| ..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999999543 366643 444443 12 23322 1 36889999999
Q ss_pred CEEEEE
Q 031613 65 STLHLV 70 (156)
Q Consensus 65 stI~l~ 70 (156)
++|-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999775
No 156
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=90.74 E-value=0.068 Score=34.01 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=26.0
Q ss_pred eccCCCCccCCceEEeEeCCCCccC-----CceeEEEee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCG-----KCGLTYVYQ 151 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg-----~c~~t~~~~ 151 (156)
.+-||.+.|++.+....-.....|. +||+.|++.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~ 63 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRE 63 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETT
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccc
Confidence 5679999999876554334567898 899999875
No 157
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.24 E-value=2.1 Score=34.32 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=51.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCC-CceEEecCC---------eeccCCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~qrL~~~G---------~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
.+.|..++|+...+.|++++|+.+|-+.|....|+.. +..-|.+.. .-|+.+.++.+.+.....++++.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 5778889999999999999999999999999999764 334555422 124455666666655555665544
Q ss_pred e
Q 031613 72 R 72 (156)
Q Consensus 72 ~ 72 (156)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 3
No 158
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=90.13 E-value=2.8 Score=27.71 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=53.6
Q ss_pred EEEEEeCCC---CEEEEEecCCCcHHHHHHHHHHHhCCCC--CceEEecCC---eeccCCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g---~~~~l~V~~~~TV~~LK~~I~~~~gip~--~~qrL~~~G---~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
.|+|...+. ...+++|..+.-|+.+..+|-+...++. ++--|-.-- -.|.-..+|..|||+.++.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577777554 4688999999999999999998887765 344444322 257788999999999999998764
No 159
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=90.05 E-value=0.29 Score=32.46 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=40.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCC-----------ceEEecCC-eeccC------CCcccccccCCCCEEEEE
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~-----------~qrL~~~G-~~L~d------~~tL~~~gi~~~stI~l~ 70 (156)
...++|++++|+.+|-+.|.+.-.+... ...|+..+ ..|+. +.+|.++|+.+|..|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999885332211 23444333 13332 367999999999999885
No 160
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=89.99 E-value=0.97 Score=29.11 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=30.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCe
Q 031613 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (156)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~ 48 (156)
.++-.+.+.|+++.+..+|+.+|..+..+. +.+.+.|.+.
T Consensus 19 y~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 19 YKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp BTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred ecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 356799999999999999999999999883 2333345443
No 161
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=89.97 E-value=0.18 Score=34.45 Aligned_cols=32 Identities=19% Similarity=0.534 Sum_probs=22.9
Q ss_pred EeeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 116 RLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
.....|| .||.--+--.-..-|.|.+|+++|.
T Consensus 58 ~akytCP--fCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 58 NEDHACP--NCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp HSCEECS--SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCCcCC--CCCCceeEecCceeEECCCCCCEEE
Confidence 3468899 9985333233357799999999984
No 162
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=89.74 E-value=2.1 Score=37.08 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=45.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh--CCC------CCceEEec----CCe-eccCC-------------CcccccccCCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip------~~~qrL~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (156)
..+.+.|-..+||.++|++|-+.. |+| ++++-|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 467888999999999999997664 444 34555554 233 35442 46999999999
Q ss_pred CEEEEEEee
Q 031613 65 STLHLVLRL 73 (156)
Q Consensus 65 stI~l~~~~ 73 (156)
++|-++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987654
No 163
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.39 E-value=1.8 Score=34.41 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=40.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeec--cCCCccccccc
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI 61 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L--~d~~tL~~~gi 61 (156)
....+.+.+..|+.++++++++.++++++.|.|++.+..+ +.......+.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4667889999999999999999999999999999988433 34444555543
No 164
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=88.34 E-value=0.25 Score=33.04 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=21.7
Q ss_pred EeeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 116 RLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
.....|| .||.--+=-.-..=|.|++|+++|.
T Consensus 34 ~aky~Cp--fCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 34 HAKYGCP--FCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp HSCEECT--TTCCEEEEEEETTEEEETTTTEEEE
T ss_pred hcCCCCC--CCCCceeeecCcceEEcCCCCCEEe
Confidence 3468899 9974322212246699999999983
No 165
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.28 E-value=0.27 Score=31.59 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=21.5
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
....|| .||.--+=-.-..=|.|.+|+++|.
T Consensus 34 ~ky~Cp--fCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 34 QKHTCP--VCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp SCBCCS--SSCSSCEEEEETTEEEETTTCCEEE
T ss_pred cccCCC--CCCCceeEecCcCeEEcCCCCCEEe
Confidence 468999 9975332222246699999999983
No 166
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=88.20 E-value=0.17 Score=32.53 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=23.3
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.+-|| .|++++....-..+..|.+|++.|+++
T Consensus 25 ~~wCP--~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 25 FLWCA--QCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp EECCS--SSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred EeECc--CCCchheecCCCCceEeCCCCCccccc
Confidence 34599 899776543323457899999999885
No 167
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=88.02 E-value=2.1 Score=25.74 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=40.5
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
|.|.|...+|+. ++++...|+.+|-..+....+ ....-...+|+..+-+. -|.+|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~~-----~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLSY-----VLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTTC-----BCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCCc-----CcCCCCEEEEEE
Confidence 788998878876 567788999999888743221 11222346887765543 445688887664
No 168
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.93 E-value=3.8 Score=27.29 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=47.7
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEe---cCCee--ccCCC--cccccccCCCCEEEEEEe
Q 031613 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGR--TLADYNIQKESTLHLVLR 72 (156)
Q Consensus 5 Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~---~~G~~--L~d~~--tL~~~gi~~~stI~l~~~ 72 (156)
|-..+..-+++.+..+.|+.+|+..++++.+...+++.|+ ++|.. |+++. ....++ -+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~--~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLE--ASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSC--SSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 4445666788899999999999999999999877678776 78864 44433 233344 4778877654
No 169
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=87.76 E-value=0.26 Score=30.92 Aligned_cols=32 Identities=25% Similarity=0.664 Sum_probs=22.0
Q ss_pred EeeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 116 RLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
.-...|| .||..-+--.--.-|.|.+|+++|.
T Consensus 25 ~~ky~C~--fCgk~~vkR~a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 25 KKKYKCP--VCGFPKLKRASTSIWVCGHCGYKIA 56 (73)
T ss_pred ccCccCC--CCCCceeEEEEeEEEECCCCCcEEE
Confidence 3468999 9975333222235699999999973
No 170
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.58 E-value=3.3 Score=35.47 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=51.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEec---CC--eeccCCCcccccccCCCCEEEEEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~-~qrL~~---~G--~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
|.|.|..++| ++.+.|++++|+.+|-..|....|+... -.-|.| .| .-|+.+..|.+.++..+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3577888888 7789999999999999999999998653 344443 22 2466677787776655555555443
No 171
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=87.53 E-value=3 Score=26.82 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred EEEEeCCCC-EEEEEecC-CCcHHHHHHHHHHHhCCCCCceEEe-cCC---eeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 3 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 3 I~Vk~~~g~-~~~l~V~~-~~TV~~LK~~I~~~~gip~~~qrL~-~~G---~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
|+-|..+.+ ...+.++. ..+|.+||.+|..+.++-..+.-|. ++. +.-.|+..| |..++.|.+.-.+.+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEeccCcc
Confidence 455555554 55678774 5799999999998887765455443 332 233333222 3345666554444444
No 172
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=87.25 E-value=0.29 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
....|| .||.--+=-.-..=|.|++|+++|.
T Consensus 35 ~ky~Cp--fCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 35 SKYFCE--FCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp SCBCCT--TTCSSCBEEEETTEEECSSSCCEEE
T ss_pred ccccCc--ccCCCeeEecCcceEEcCCCCCEEe
Confidence 468899 9975322111245699999999983
No 173
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=87.11 E-value=0.29 Score=32.09 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=21.1
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 149 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~ 149 (156)
....|| .||.--+=-.-..=|.|++|+++|.
T Consensus 35 ~ky~Cp--fCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 35 ARYDCS--FCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp SCCCCS--SSCSSCCEEEETTEEECTTTCCEEE
T ss_pred cCCcCC--CCCCceeeecccceEEcCCCCCEEe
Confidence 468999 9974322111245699999999983
No 174
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.79 E-value=0.27 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.922 Sum_probs=20.3
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
.-.|. +||.- |.|.-..+|++|||
T Consensus 17 H~lCr--RCG~~---syH~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCR--RCGRV---SYNVKKGYCAACGF 40 (62)
T ss_dssp CCBCS--SSCSB---CEETTTTEETTTCT
T ss_pred eeeec--ccCcc---hhccccccccccCC
Confidence 56798 99865 45999999999998
No 175
>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e
Probab=86.43 E-value=0.18 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.2
Q ss_pred ecCCccccccccccCCcccccccceee
Q 031613 73 LRGGAKKRKKKTYTKPKKIKHKKKKVK 99 (156)
Q Consensus 73 ~~gg~~k~~kk~~~~pk~~k~~~kk~k 99 (156)
..|.-.+++|+..+|||++++++++.+
T Consensus 4 vHGSLarAGKVR~QTPKV~k~eKkk~~ 30 (63)
T 3u5c_e 4 VHGSLARAGKVKSQTPKVEKTEKPKKP 30 (63)
T ss_dssp CBCCCTTTTHHHHHSCCCCCCCCCCCC
T ss_pred ccchhhhcccccCCCCCCcccccccCC
Confidence 456677899999999999999877644
No 176
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=86.30 E-value=3.7 Score=35.68 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=44.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHh--CCCC------CceEEec----CCe-eccCC-------------CcccccccCCC
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~--gip~------~~qrL~~----~G~-~L~d~-------------~tL~~~gi~~~ 64 (156)
..+.+.|-..+||.++|++|-+.. |+|- +++.|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 357788889999999999997553 5553 3445543 233 35542 46999999999
Q ss_pred CEEEEEEee
Q 031613 65 STLHLVLRL 73 (156)
Q Consensus 65 stI~l~~~~ 73 (156)
++|.|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887554
No 177
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=86.25 E-value=3.4 Score=26.30 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=52.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEe-cCCeeccCCCcccccccCCCCEEEEEEeecCC
Q 031613 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (156)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg 76 (156)
..++|+..+....+-...++++.+|+..--++ -+|--+...++-...=++.|+.|.|+.|.+-|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 45789999999988889999999999776555 56667778888888888899999999887655
No 178
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=86.02 E-value=0.33 Score=28.88 Aligned_cols=24 Identities=29% Similarity=0.947 Sum_probs=20.1
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
.-.|. +||.- +.|.-..+|++|||
T Consensus 17 H~~Cr--RCG~~---syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCR--RCGEK---SYHTKKKVCSSCGF 40 (57)
T ss_dssp EEECT--TTCSE---EEETTTTEETTTCT
T ss_pred ccccc--ccCCh---hhhccccccccccC
Confidence 56788 99864 45999999999998
No 179
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=84.87 E-value=1.7 Score=33.79 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=43.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEecC---Ce--eccCCCccccc
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADY 59 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~-qrL~~~---G~--~L~d~~tL~~~ 59 (156)
|.+.|..++|....+.|++.+|+.+|-+.|.+..|+...+ .-|.+. |. -|+.+..|.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 4688999999999999999999999999999999987532 344432 21 34555555544
No 180
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=84.73 E-value=0.26 Score=30.86 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=19.6
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
....|| .||.--+=-.-..=|.|.+|+++|
T Consensus 25 ~ky~C~--fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCS--FCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCS--SCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred cCccCC--CCCCceeEecCCCeEECCCCCCEE
Confidence 468899 997422111112459999999987
No 181
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=83.99 E-value=1.1 Score=38.00 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEe
Q 031613 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (156)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~ 44 (156)
..+.|..++|+.+|+++|++..|+|+++|||.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 46789999999999999999999999999997
No 182
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.89 E-value=2.8 Score=27.77 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=45.7
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCce-EEe------cCCeeccCCCcc----cccccCCCCEEEE
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI------FAGKQLEDGRTL----ADYNIQKESTLHL 69 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~------~~G~~L~d~~tL----~~~gi~~~stI~l 69 (156)
|.|-..+|....|.|++++|+.++-+.+..+.+...+.- -|+ .--+.++|...| +...+.....+.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 455567899999999999999999999999988664432 222 122567777654 3444444555544
No 183
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Probab=82.19 E-value=0.35 Score=30.75 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=20.5
Q ss_pred eecCCccccccccccCCcccccccc-eee
Q 031613 72 RLRGGAKKRKKKTYTKPKKIKHKKK-KVK 99 (156)
Q Consensus 72 ~~~gg~~k~~kk~~~~pk~~k~~~k-k~k 99 (156)
...|.-.+++|+..+|||+++++++ |.+
T Consensus 3 kvHGSLarAGKVR~QTPKV~kqeKk~K~~ 31 (80)
T 2xzm_X 3 RMHGTLAKAGKVRKQTPKVEKKDKPRKTP 31 (80)
T ss_dssp ----CCTTTTHHHHHSCCCCCCCCSSCCC
T ss_pred cchhhhhccccccccCCCcchhhhcccCC
Confidence 3456677899999999999999987 444
No 184
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=82.04 E-value=5 Score=27.31 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=47.3
Q ss_pred EEEEEecCCCcHHHHHHHHHH-HhC-------CCCCceEEecCCeecc--CCCcccccccCCCCEEEEEEe
Q 031613 12 TITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~-~~g-------ip~~~qrL~~~G~~L~--d~~tL~~~gi~~~stI~l~~~ 72 (156)
.+.+.|+|+++.++|-+.+-. .++ |+-+.-.+..+|++.. .+.+|.+.||..-|.|.+.-.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TP 109 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTP 109 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECT
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCC
Confidence 578899999999999887743 233 4555667888999885 468999999998888877633
No 185
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=81.89 E-value=4.4 Score=27.95 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=40.4
Q ss_pred EEEecC----CCcHHHHHHHHHHHhCCCCCceEEec--CCeec-----cC--CCcccccccCCCCEEEEEE
Q 031613 14 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 14 ~l~V~~----~~TV~~LK~~I~~~~gip~~~qrL~~--~G~~L-----~d--~~tL~~~gi~~~stI~l~~ 71 (156)
.+.|++ .+|+.+|-+.|....|.+. +..+.- ..+.| +| +.+|+++|+++|+.|.+.-
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 355653 4799999999988888764 555542 23444 22 3789999999999998774
No 186
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=81.75 E-value=1.5 Score=38.40 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=40.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCe-eccCCCccccc
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 59 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~-~L~d~~tL~~~ 59 (156)
.+...+.+.++.|+.+|+..|++.+||+++.|.+++... .++.....+.|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 456678999999999999999999999999999987554 55555555543
No 187
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=81.47 E-value=0.29 Score=30.73 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=20.3
Q ss_pred eEEEeeccCCCCccCCceEEeEe--CCCCccC
Q 031613 113 KVQRLRKECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 113 ~~~~~~~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
+|..+...|. |+ ++|++.| .|+|.|.
T Consensus 34 kvgL~gf~Cr---Cg-~~FCs~HRy~e~H~C~ 61 (74)
T 1wfl_A 34 KVGLTGFDCR---CG-NLFCGLHRYSDKHNCP 61 (74)
T ss_dssp BCGGGCEECT---TS-CEECSSSCSTTTTTCC
T ss_pred cccccCeecC---CC-CEechhcCCCccCCCc
Confidence 3444568894 98 9999999 6899885
No 188
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=80.26 E-value=0.76 Score=29.98 Aligned_cols=25 Identities=32% Similarity=0.789 Sum_probs=20.5
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
..-.|. +||.-. .|.-..+|++|||
T Consensus 15 tHtlCr--RCG~~s---yH~qK~~Ca~CGy 39 (94)
T 4a18_A 15 THTLCR--RCGKAT---YHKQKLRCAACGY 39 (94)
T ss_dssp CEEECT--TTCSEE---EETTTTEESSSCG
T ss_pred ccceec--CcCchh---hhhccccccccCC
Confidence 356798 999654 5999999999997
No 189
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=80.10 E-value=4.1 Score=26.66 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=42.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCcc
Q 031613 12 TITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAK 78 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~---~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~~ 78 (156)
.+.++++..+||.++-+++.-. ..|..+...+..+|+....+. -+++|+.|.+.-.+.-..|
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~-----~L~dGDRVEIyrpl~~DPk 91 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTD-----VLKEGDRIEIYRPLLADPK 91 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTC-----BCCTTCEEEECCCCC----
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCc-----cCCCCCEEEEEecccCCHH
Confidence 5677899999999999887532 234455567778888776443 4668999998866554433
No 190
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=78.70 E-value=10 Score=24.12 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=48.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh-C--CCC---CceEEecCC--eeccCCCcccccccCCCCEEEEEEe
Q 031613 12 TITLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~-g--ip~---~~qrL~~~G--~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
...+.|+.++|+.++=++++... | +++ .-.++.++| +.|..+.++++.||.+-..|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 45678999999999999987543 3 322 246777888 8999999999999999999988653
No 191
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.68 E-value=0.34 Score=29.57 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=19.2
Q ss_pred EEeeccCCCCccCCceEEeEe--CCCCccC
Q 031613 115 QRLRKECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
..+...| +|+ ++|++.| .++|.|.
T Consensus 26 gl~~f~C---rCg-~~FC~~HRy~e~H~C~ 51 (64)
T 1wfh_A 26 GLTGFMC---RCG-TTFCGSHRYPEVHGCT 51 (64)
T ss_dssp CTTCEEC---SSS-CEECTTTCSTTTTTCC
T ss_pred CccCEEe---ecC-CEeccccCCcccCCCC
Confidence 3346789 698 9999999 6899885
No 192
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=77.31 E-value=0.8 Score=29.89 Aligned_cols=25 Identities=28% Similarity=0.816 Sum_probs=20.3
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
..-.|. +||.-. .|.-..+|++|||
T Consensus 15 tHtlCr--RCG~~s---yH~qK~~Ca~CGy 39 (94)
T 3iz5_l 15 THTLCV--RCGRRS---FHLQKSTCSSCGY 39 (94)
T ss_dssp SEEECT--TTCSEE---EEGGGTEETTTCS
T ss_pred ccceec--CcCchh---hhcccccccccCC
Confidence 356788 999654 5889999999997
No 193
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.21 E-value=0.77 Score=28.00 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=18.7
Q ss_pred eeccCCCCccCCceEEeEe--CCCCccC
Q 031613 117 LRKECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
+...| +|| ++|++.| .++|.|.
T Consensus 28 ~~f~C---rCg-~~FC~~HR~~e~H~C~ 51 (64)
T 1wg2_A 28 MGFKC---KCG-STFCGSHRYPEKHECS 51 (64)
T ss_dssp SCEEC---TTS-CEECSSSCSSTTTTCC
T ss_pred cCeEe---ecC-CEecccCCCccccCCC
Confidence 46889 798 9999999 6899885
No 194
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=77.14 E-value=12 Score=23.90 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=48.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh-C--CCC--CceEEecCCee--ccCCCcccccccCCCCEEEEEE
Q 031613 12 TITLEVESSDTIDNVKAKIQDKE-G--IPP--DQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~-g--ip~--~~qrL~~~G~~--L~d~~tL~~~gi~~~stI~l~~ 71 (156)
...+.|+..+|+.++=++++... | ++| .-.++..+|.. |.++.++++.||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 45678999999999999987543 3 322 35688899987 9999999999999999998764
No 195
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=74.58 E-value=8.3 Score=27.62 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=41.4
Q ss_pred EEEecCCCcHHHHHHHHHHHhC-CC---------CCceEEecCCeeccCCCcccccccCCCCEEEEEEeecCCc
Q 031613 14 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 77 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~g-ip---------~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~~~~gg~ 77 (156)
.++++. .||.+|.+.+..... +. .....+..||.......- .+.-|++|+.|.++....||.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 445665 899999999977631 10 123456788887765322 244678999998877777775
No 196
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=74.03 E-value=1.3 Score=29.77 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=19.2
Q ss_pred ccCCCCccCCceEEeEeCC------CCccCCceeEEE
Q 031613 119 KECPNAECGAGTFMANHFD------RHYCGKCGLTYV 149 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~------r~~cg~c~~t~~ 149 (156)
.-|| .||. +|..-.+ |+.|.+|+|.+-
T Consensus 5 ~FCp--~Cgn--~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 5 QYCI--ECNN--MLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCS--SSCC--CCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eeCc--CCCC--EeeEcccCCCCeeEEECCCCCCeEE
Confidence 4699 8975 4433333 899999999774
No 197
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=74.01 E-value=3 Score=26.75 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=23.2
Q ss_pred eeccCCCCccCCc-eEEeEe-----CCCCccCCceeEEEeecC
Q 031613 117 LRKECPNAECGAG-TFMANH-----FDRHYCGKCGLTYVYQKA 153 (156)
Q Consensus 117 ~~~~cp~~~c~~g-~fma~h-----~~r~~cg~c~~t~~~~~~ 153 (156)
....|| .|+.. ..-... .....|+.||..|.+...
T Consensus 22 t~F~CP--fCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~ 62 (85)
T 1wii_A 22 TQFTCP--FCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPIT 62 (85)
T ss_dssp SCCCCT--TTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECC
T ss_pred CeEcCC--CCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccC
Confidence 468999 99765 111111 236789999999977643
No 198
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=72.87 E-value=9.1 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=35.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEec----C---CeeccCCCccc
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----A---GKQLEDGRTLA 57 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~----~---G~~L~d~~tL~ 57 (156)
|.|-..+|....|.|++++|+.||-+.+..+.+++.+.-..++ . -+.|+|...+-
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 4555678889999999999999999999887765543332222 1 24677765543
No 199
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.17 E-value=0.65 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=21.1
Q ss_pred EeeccCCCCccCCceEEeEe--CCCCccCC
Q 031613 116 RLRKECPNAECGAGTFMANH--FDRHYCGK 143 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h--~~r~~cg~ 143 (156)
.+...|+ .|+ +.|++.| .+.|.|..
T Consensus 25 ll~f~C~--~C~-~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 25 MMKLTCE--RCS-RNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp SSCCBCS--SSC-CBCCHHHHSTTSSCCCS
T ss_pred ccceECC--CCC-cccCcccCCccCCcCCC
Confidence 4677998 898 9999999 68999974
No 200
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=71.19 E-value=1.1 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=19.9
Q ss_pred ccCCCCccCCceEEeEeCC------CCccCCceeEEE
Q 031613 119 KECPNAECGAGTFMANHFD------RHYCGKCGLTYV 149 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~------r~~cg~c~~t~~ 149 (156)
+-|| .|+. +|..-.+ ++.|.+|+|.+.
T Consensus 25 ~FCP--eCgN--mL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 25 RFCR--DCNN--MLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CBCT--TTCC--BCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eeCC--CCCC--EeeECccCCCceeEEECCCCCCcEE
Confidence 6799 9974 5544433 799999999763
No 201
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=71.18 E-value=0.83 Score=28.74 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=22.1
Q ss_pred EEEeeccCCCCccCCceEEeEe--CCCCccCC
Q 031613 114 VQRLRKECPNAECGAGTFMANH--FDRHYCGK 143 (156)
Q Consensus 114 ~~~~~~~cp~~~c~~g~fma~h--~~r~~cg~ 143 (156)
..+|...|. .|+ ++|++.| .+.|.|.+
T Consensus 25 ~dflpf~C~--~C~-~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 25 RDFLPFVCD--GCS-GIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CSCCCEECT--TTC-CEECSTTCSSGGGTCCC
T ss_pred ccceeeECc--ccC-cCcCcccCCccccCCCC
Confidence 345788998 898 9999999 58998864
No 202
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.84 E-value=1.3 Score=28.52 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=21.6
Q ss_pred EEeeccCCCCccCCceEEeEe--CCCCccCC
Q 031613 115 QRLRKECPNAECGAGTFMANH--FDRHYCGK 143 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h--~~r~~cg~ 143 (156)
..+...|+ .|+ +.|++.| .+.|.|.+
T Consensus 37 ~~l~f~C~--~C~-~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 37 ELVAVICP--YCE-KNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp ESSCEECT--TTC-CEECGGGCSTGGGTCSS
T ss_pred CccceECC--CCC-cccccccCCccCCCCCC
Confidence 44778999 898 9999999 58898975
No 203
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=70.83 E-value=7.1 Score=32.93 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=37.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCC--CceEEe
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 44 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~--~~qrL~ 44 (156)
|.+.|..++|....+.|++++|+.+|-+.|....|+.. +..-|.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~ 262 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALF 262 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEE
Confidence 35788889999999999999999999999999999974 344454
No 204
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.96 E-value=0.24 Score=29.92 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred CCccccccccccCCccccccccee
Q 031613 75 GGAKKRKKKTYTKPKKIKHKKKKV 98 (156)
Q Consensus 75 gg~~k~~kk~~~~pk~~k~~~kk~ 98 (156)
|.-.+++|+..+|||++++++++.
T Consensus 6 GSLarAGKVR~QTPKV~kqeKkk~ 29 (62)
T 3iz6_Z 6 GSLARAGKVRGQTPKVAKQDKKKK 29 (62)
T ss_dssp HHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred chhhccccccCCCCCcchhhhccC
Confidence 344578899999999999987654
No 205
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=69.74 E-value=12 Score=25.50 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=44.0
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC------ceEEe---cCCe--eccCC--CcccccccCCCCEEEEEEe
Q 031613 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDG--RTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 7 ~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~------~qrL~---~~G~--~L~d~--~tL~~~gi~~~stI~l~~~ 72 (156)
..+..-+++.+..+.|+.+|+..++++.+..-+ ++.|+ ++|. .|+++ .....+++ +..|++..+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEeeh
Confidence 345556678999999999999999999987543 66665 7886 34433 33344444 667777643
No 206
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=69.68 E-value=5.6 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCC
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip 37 (156)
+..+.+-|+++.+..+|..+|..+.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4478999999999999999999998865
No 207
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=68.97 E-value=10 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~ 39 (156)
|.|-..+|....|.|++++|+.||-+.+..+.+++..
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~ 70 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYS 70 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCC
Confidence 4455568889999999999999999999888876543
No 208
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.65 E-value=1.5 Score=27.52 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=19.3
Q ss_pred EEeeccCCCCccCCceEEeEe--CCCCccC
Q 031613 115 QRLRKECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
..+...| +|+ ++|++.| .++|.|-
T Consensus 36 gL~~f~C---rCg-~~FCs~HRy~e~H~C~ 61 (74)
T 1wfp_A 36 GVTGFKC---RCG-STFCGTHRYPESHECQ 61 (74)
T ss_dssp TTTCEEC---TTS-CEECTTTCSTTTSCCC
T ss_pred cccceEe---ccC-CEeccccCCCcCCCCc
Confidence 3346889 698 9999999 5899885
No 209
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=67.03 E-value=14 Score=23.91 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE-ecCCe
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 48 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL-~~~G~ 48 (156)
...+.|.|++.+|=.++|+.++..+++.+....- ...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 3689999999999999999999999999876633 34443
No 210
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=66.99 E-value=3.1 Score=24.85 Aligned_cols=22 Identities=36% Similarity=1.082 Sum_probs=16.6
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
-.+|| .||. .|...+.|+.||+
T Consensus 30 l~~c~--~cG~-----~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECP--QCHG-----KKLSHHICPNCGY 51 (60)
T ss_dssp CEECT--TTCC-----EECTTBCCTTTCB
T ss_pred ceECC--CCCC-----EeCCceEcCCCCc
Confidence 46799 7985 3677788999984
No 211
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.78 E-value=12 Score=24.20 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEe--cCCeeccCCCcccccccCCCCEEEEEEe
Q 031613 21 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (156)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L~d~~tL~~~gi~~~stI~l~~~ 72 (156)
.++.+|+.+..+.+.++....+|+ -+|..++|+.-+..+. ..|+.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEc
Confidence 579999999999999976556665 4788888776555443 456555543
No 212
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=66.44 E-value=11 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHh
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~ 34 (156)
|.+=.++|-.+.++++.++|+.+||+.+-++.
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 33445688899999999999999999997663
No 213
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=65.74 E-value=5.2 Score=33.90 Aligned_cols=72 Identities=11% Similarity=0.226 Sum_probs=54.1
Q ss_pred EEEEEeCC--CCEEE----EEecCCCcHHHHHHHHHHHhCCCCCceEEecC------Ceecc-CCCccccc--ccCCCCE
Q 031613 2 QIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKEST 66 (156)
Q Consensus 2 ~I~Vk~~~--g~~~~----l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G~~L~-d~~tL~~~--gi~~~st 66 (156)
-||+|..+ .+++. +-|+.+++|++|-..|.+..|+|++.--.+|. -..|+ .+.++.+. +|.+|+.
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI 211 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI 211 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE
Confidence 36777654 33443 57899999999999999999999975544442 23567 57899999 9999999
Q ss_pred EEEEEee
Q 031613 67 LHLVLRL 73 (156)
Q Consensus 67 I~l~~~~ 73 (156)
|.+-...
T Consensus 212 I~fQ~~~ 218 (530)
T 2ylm_A 212 IVFQKDD 218 (530)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 8776543
No 214
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=64.76 E-value=7.5 Score=23.69 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=26.9
Q ss_pred EeeccCCCCccCCceEEeEe-CCCCccCCceeEEEe
Q 031613 116 RLRKECPNAECGAGTFMANH-FDRHYCGKCGLTYVY 150 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~~ 150 (156)
+++-.|| .|+.--....| .....|..||.+.+.
T Consensus 5 Fm~VKCp--~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 5 FVKVKCP--DCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEEEECT--TTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred eEEEECC--CCCCceEEEecCceEEEcccCCCEEee
Confidence 5678999 89877777788 478899999988843
No 215
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=64.30 E-value=15 Score=24.94 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=39.4
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCc-eEEecCCeeccCCCccccccc---CCCCEEEEEE
Q 031613 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVL 71 (156)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~-qrL~~~G~~L~d~~tL~~~gi---~~~stI~l~~ 71 (156)
+-|+.+.||+++...|..+..+++++ .-|+.++.....+.+++++=- .++.-|+|..
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 46899999999999999999998876 444457765555666655411 1244566654
No 216
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.00 E-value=0.9 Score=27.95 Aligned_cols=20 Identities=35% Similarity=0.791 Sum_probs=17.1
Q ss_pred ccCCCCccCCceEEeEe--CCCCccC
Q 031613 119 KECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
..| +|| ++|++.| .++|.|-
T Consensus 33 f~C---rCg-~~FC~~HRy~e~H~C~ 54 (67)
T 1x4w_A 33 GSC---RCG-YVFCMLHRLPEQHDCT 54 (67)
T ss_dssp HCC---SSS-CCCCTTTCSTGGGTCS
T ss_pred eEe---cCC-CEehhccCCccccCCc
Confidence 689 798 9999999 5899874
No 217
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=63.74 E-value=17 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.3
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCC
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~ 39 (156)
|.|-..+|....+.|++++|+.+|-+.|..+.+++.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 4455567888999999999999999999999997654
No 218
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=63.57 E-value=4.3 Score=24.26 Aligned_cols=22 Identities=36% Similarity=0.809 Sum_probs=15.4
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
-.+|| .||. .|..-+.|..||+
T Consensus 30 l~~c~--~cGe-----~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCP--ECKA-----MKPPHTVCPECGY 51 (60)
T ss_dssp CEECT--TTCC-----EECTTSCCTTTCE
T ss_pred eeECC--CCCC-----eecceEEcCCCCc
Confidence 56799 7985 3444566999983
No 219
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.28 E-value=3.8 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.0
Q ss_pred EEeeccCCCCccCCceEEeEe-CCCCccCCceeEE
Q 031613 115 QRLRKECPNAECGAGTFMANH-FDRHYCGKCGLTY 148 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~ 148 (156)
.++.-.|| .|+.--....| ..-..|..|+.+.
T Consensus 33 ~Fm~VkCp--~C~~~~~VFShA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 33 FFMDVKCQ--GCFNITTVFSHSQTVVVCPGCQTVL 65 (86)
T ss_dssp CEEEEECT--TTCCEEEEETTCSSCCCCSSSCCCC
T ss_pred cEeEEECC--CCCCeeEEEecCCcEEEccCCCCEe
Confidence 45678999 89887777788 4788999999776
No 220
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=63.24 E-value=12 Score=32.66 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=34.3
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCC
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~ 38 (156)
|.+.|..++|....+.|++.+|+.+|-+.|....|+..
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 45788899999999999999999999999999999754
No 221
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.86 E-value=2 Score=24.31 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=20.1
Q ss_pred eccCCCCccCCceEEeEe-CCCCccCCceeEEE
Q 031613 118 RKECPNAECGAGTFMANH-FDRHYCGKCGLTYV 149 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~ 149 (156)
...|| .|+..-+...+ .....|..||+.|-
T Consensus 5 ~~~CP--~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCP--ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCT--TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred cEeCc--CCCCcceEEcCCCCeEECcccCCccc
Confidence 35799 89752443443 25689999999773
No 222
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.59 E-value=9.7 Score=22.98 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=27.4
Q ss_pred EEeeccCCCCccCCceEEeEe-CCCCccCCceeEEEe
Q 031613 115 QRLRKECPNAECGAGTFMANH-FDRHYCGKCGLTYVY 150 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~~ 150 (156)
.+++-.|| .|+.--....| ..-..|..|+.+.+.
T Consensus 12 ~Fm~VkCp--~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 12 RFLRVKCI--DCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp CEEEEECS--SSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred cEEEEECC--CCCCeeEEEecCCeEEEccCcCCEEec
Confidence 46778999 89877777788 478899999988743
No 223
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=61.58 E-value=27 Score=22.94 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHhCCCCC--ceEE--ecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 21 DTIDNVKAKIQDKEGIPPD--QQRL--IFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~qrL--~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
.|+.+|+.+..+.++++.+ ..+| .-+|..++|+.-+..+. ..|+.+++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEE
Confidence 5899999999999999753 2444 45899998876655543 44444444
No 224
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=61.33 E-value=17 Score=23.15 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
...+.+.|++.+|=.++|+.++..+++.+....-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4589999999999999999999999998876643
No 225
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.08 E-value=4 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=19.5
Q ss_pred cCCCCccCCceEEeEe-CCCCccCCceeEE
Q 031613 120 ECPNAECGAGTFMANH-FDRHYCGKCGLTY 148 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h-~~r~~cg~c~~t~ 148 (156)
.|| .|+..-+...| ..-..|..||+.+
T Consensus 13 ~Cp--~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 13 TCP--NHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp SBT--TBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cCc--CCCCCceeEeCCCCeEEeCCCCCEE
Confidence 699 89754444454 2568899999987
No 226
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=60.10 E-value=16 Score=24.23 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=38.3
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCce-EEecCCeeccCCCcccccc--c-CCCCEEEEEE
Q 031613 15 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYN--I-QKESTLHLVL 71 (156)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~~~G~~L~d~~tL~~~g--i-~~~stI~l~~ 71 (156)
+-|+.+.||++|...|..+..+++++- -|+.++.....+.+++++= - .++.-|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 578889999999999999999988653 4545665445566666551 1 1244566553
No 227
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=60.06 E-value=1.8 Score=27.89 Aligned_cols=21 Identities=43% Similarity=0.953 Sum_probs=18.2
Q ss_pred eccCCCCccCCceEEeEe--CCCCccC
Q 031613 118 RKECPNAECGAGTFMANH--FDRHYCG 142 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h--~~r~~cg 142 (156)
...| +|| ++|++.| .++|.|.
T Consensus 40 ~f~C---rCg-~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 40 SFEC---RCG-NNFCASHRYAEAHGCN 62 (85)
T ss_dssp CEEC---TTC-CEECTTTCSTGGGTCC
T ss_pred CeEc---CCC-CEecccCCCccCCCCc
Confidence 6889 598 9999999 5899885
No 228
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=59.71 E-value=2.8 Score=28.13 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=45.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCC--ceEEecCC---eeccCCCcccccccCCCCEEEEE
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~--~qrL~~~G---~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
...+++|..+.-|+.+..+|-+...++.+ +--|-.-- -.|.-..+|..|||+.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 56788898889999999999988776642 33333222 25678889999999999988765
No 229
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=59.20 E-value=17 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=28.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
.+.+.|++.+|=.++|+.|+..+++.+....-
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT 55 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGIST 55 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 38999999999999999999999999876643
No 230
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=59.15 E-value=17 Score=24.91 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=38.6
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCce-EEecCCeeccCCCccccccc--C-CCCEEEEEEe
Q 031613 15 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI--Q-KESTLHLVLR 72 (156)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~~~G~~L~d~~tL~~~gi--~-~~stI~l~~~ 72 (156)
+-|+.+.||+++...|..+..+++++- -|+-++.....+.+++++=- + ++.-|+|...
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 568999999999999999999988764 44446544445566655421 1 3445666543
No 231
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=58.79 E-value=17 Score=23.41 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=28.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCceE
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qr 42 (156)
..+.+.|++.+|=.++|+.++..+++.+....
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~Vn 53 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVN 53 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeee
Confidence 68999999999999999999999999876653
No 232
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=58.69 E-value=5.9 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred cCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.|| .|+.......-.+...|..|+..|-..
T Consensus 10 ~CP--~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 10 VCP--VCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp BCT--TTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred ECC--CCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 699 897544332223567899999988654
No 233
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=57.93 E-value=5.4 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=20.7
Q ss_pred cCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.|| .|+.......-.+...|..|+..|-..
T Consensus 12 ~CP--~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 12 ACP--KDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp BCT--TTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred CCC--CCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 599 897544433324577899999988654
No 234
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=57.88 E-value=4.5 Score=29.28 Aligned_cols=30 Identities=20% Similarity=0.609 Sum_probs=21.0
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
-..||++.|.--|- -...++|.|.+|+.++
T Consensus 43 Y~aC~~~~CnKKv~-~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 43 YQACPTQDCNKKVI-DQQNGLYRCEKCDTEF 72 (181)
T ss_dssp EEBCCSTTCCCBCE-EETTTEEEETTTTEEE
T ss_pred ECCCCchhcCCccc-cCCCCeEECCCCCCcC
Confidence 56899666976553 2234679999998764
No 235
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=57.16 E-value=9.8 Score=23.78 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhCCC-----CCceEEecCC
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip-----~~~qrL~~~G 47 (156)
.+.+.|+++.+..+|..+|..+.++. ....+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 67899999999999999999999865 2344555533
No 236
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=57.11 E-value=20 Score=24.09 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=39.5
Q ss_pred EEecCCCcHHHHHHHHHHHhCCCCCce-EEecCCeeccCCCcccccc--c-CCCCEEEEEEe
Q 031613 15 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (156)
Q Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~~~G~~L~d~~tL~~~g--i-~~~stI~l~~~ 72 (156)
+-|+.+.||+++...|..+..+++++- -|+.++.....+.+++++= - .++.-|+|...
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 468889999999999999999988653 4445665445566666551 1 23556776654
No 237
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.84 E-value=22 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
...+.+.|++.+|=.++|+.++..+++.+....-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4689999999999999999999999998876644
No 238
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=55.48 E-value=34 Score=21.13 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=40.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcccccccCCCCEEEEEE
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
+|+|.+++|.. ++++...|+.|+=..|....+-. -.--..+|+..+-+. .+++|++|.++-
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L~~-----~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPIDY-----KVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECTTC-----BCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCCCc-----ccCCCCEEEEEc
Confidence 57888888876 45777899999988776544311 112235777665443 456788887763
No 239
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=54.43 E-value=3.9 Score=25.22 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=23.7
Q ss_pred EEeeccCCCCccCCceEEeEe-CCCCccCCceeEEEeec
Q 031613 115 QRLRKECPNAECGAGTFMANH-FDRHYCGKCGLTYVYQK 152 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~~~~ 152 (156)
......|+ .||.-+ -.| .|-..|..||+...+++
T Consensus 25 ~~v~Y~C~--~CG~~~--e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 25 ATLKYICA--ECSSKL--SLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CCCCEECS--SSCCEE--CCCTTSTTCCSSSCCCCCBCC
T ss_pred ceEEEECC--CCCCcc--eeCCCCCccCCCCCceEeEec
Confidence 34678999 898532 234 56788999999555554
No 240
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=53.82 E-value=20 Score=24.60 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=39.6
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEe-cCCeec-cCCCcccccc--c-CCCCEEEEEEe
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYN--I-QKESTLHLVLR 72 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G~~L-~d~~tL~~~g--i-~~~stI~l~~~ 72 (156)
.+-|+.+.||+++...|..+..+++++--.+ |-+..+ ..+.+++++= - .++.-|+|...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3568999999999999999999998765444 545444 4556665541 1 13446666543
No 241
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=53.55 E-value=6.2 Score=24.17 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=19.7
Q ss_pred cCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.|| .|+..-....=.+...|..|+..|-..
T Consensus 10 ~CP--~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 10 ACP--ICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CCT--TTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred eCC--CCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 589 897543322223567899999988654
No 242
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=53.17 E-value=7.4 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=19.8
Q ss_pred cCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.|| .|+..-....=.+...|..|++.|-..
T Consensus 10 ~CP--~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 10 VCP--VTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp BCS--SSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred ECC--CCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 589 897443322223567899999988654
No 243
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=52.91 E-value=28 Score=23.47 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=38.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCce-EEecCCeeccCCCccccccc---CCCCEEEEEE
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTLHLVL 71 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~~~G~~L~d~~tL~~~gi---~~~stI~l~~ 71 (156)
.+-|+.+.||+++...|..+..+++++- -|+-++.....+.+++++=- .++.-|+|..
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3558999999999999999999988654 34446543445556554411 1344566554
No 244
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=52.50 E-value=7.5 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=19.9
Q ss_pred cCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.|| .|+..-....=.+...|..|++.|-..
T Consensus 10 ~CP--~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 10 VCP--LCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp BCT--TTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred ECC--CCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 699 897543322213567899999988654
No 245
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=51.98 E-value=2.2 Score=24.34 Aligned_cols=11 Identities=45% Similarity=0.917 Sum_probs=5.8
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|++||.+|.
T Consensus 4 Y~C~rCg~~fs 14 (48)
T 4ayb_P 4 YRCGKCWKTFT 14 (48)
T ss_dssp -CCCCTTTTCC
T ss_pred EEeeccCCCcc
Confidence 45666666553
No 246
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=51.45 E-value=6.1 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=19.5
Q ss_pred ccCCCCccCCceEEeEeCCCCccCCceeE
Q 031613 119 KECPNAECGAGTFMANHFDRHYCGKCGLT 147 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~r~~cg~c~~t 147 (156)
..|| .|.-.|. -.+.++|.|-+|+.+
T Consensus 43 ~ACp--~CnKKV~-~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCT--CQGKSVL-KYHGDSFFCESCQQF 68 (172)
T ss_dssp EECT--TSCCCEE-EETTTEEEETTTTEE
T ss_pred hhch--hhCCEee-eCCCCeEECCCCCCC
Confidence 5699 5976554 345689999999976
No 247
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=50.33 E-value=15 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=27.1
Q ss_pred EEeeccCCCCccCCceEEeEe-CCCCccCCceeEEEe
Q 031613 115 QRLRKECPNAECGAGTFMANH-FDRHYCGKCGLTYVY 150 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~~ 150 (156)
.++.-.|| .|+.--....| ..-..|..||.+.+.
T Consensus 29 ~Fm~VkCp--~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 29 YFMDVKCA--QCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp CEEEEECS--SSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred cEEEeECC--CCCCeeEEEecCccEEEccCCCCEEee
Confidence 45678999 89877777788 478899999988743
No 248
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=49.86 E-value=7.5 Score=29.87 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=23.8
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
.+-|| .||.-..+....-|.+|..|+...
T Consensus 107 ~~fC~--~CG~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 107 HKYCG--YCGHEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp TSBCT--TTCCBEEECSSSSCEEESSSSCEE
T ss_pred CCccc--cCCCcCccCCCceeeeCCCCCCEe
Confidence 58899 999877776656788999999866
No 249
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=49.33 E-value=16 Score=23.15 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.0
Q ss_pred EEeeccCCCCccCCceEEeEe-CCCCccCCceeEEE
Q 031613 115 QRLRKECPNAECGAGTFMANH-FDRHYCGKCGLTYV 149 (156)
Q Consensus 115 ~~~~~~cp~~~c~~g~fma~h-~~r~~cg~c~~t~~ 149 (156)
.+++-.|| .|+.--....| ..-..|..|+.+.+
T Consensus 31 ~Fm~VkCp--~C~~~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 31 YFLDVKCP--GCLNITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp CEEEEECT--TSCSCEEEESBCSSCCCCSSSCCCCE
T ss_pred cEEEEECC--CCCCeeEEEecCCeEEEccccCCEEe
Confidence 45678999 89888788888 47889999998774
No 250
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=47.37 E-value=23 Score=22.57 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.9
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHH
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (156)
+.|...+|.+|.++|+.+.-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4555668999999999999888888777654
No 251
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=43.90 E-value=37 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=29.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
..+.|.|++..|=.++|+.|+..+++.+....-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 126 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT 126 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEe
Confidence 578999999999999999999999999876643
No 252
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=42.58 E-value=25 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHhCCCCC--ceEEe--cCCeeccCCCcccccccCCCCEEE
Q 031613 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLH 68 (156)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~qrL~--~~G~~L~d~~tL~~~gi~~~stI~ 68 (156)
.++.+|+.+..+..+++.+ ..+|+ -+|..++|+.-+..+. ++..+.
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~Lm 131 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFV 131 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEE
Confidence 5899999999999999653 44444 6788888776555443 344443
No 253
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=41.77 E-value=11 Score=30.82 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=21.2
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEE
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTY 148 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~ 148 (156)
.-..||...|...|.- .+.++|.|.+|+.++
T Consensus 307 ~Y~aC~~~~C~kkv~~-~~~g~~~C~~C~~~~ 337 (444)
T 4gop_C 307 YYTACASEGCNKKVNL-DHENNWRCEKCDRSY 337 (444)
T ss_dssp EEEECCSTTCCCBEEE-CTTSCEEETTTTEEE
T ss_pred EEccCCcccCCCcccc-CCCccEECCCCCCcC
Confidence 3468995569765532 234679999999764
No 254
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=41.42 E-value=36 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 68888889999999999999998754
No 255
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=40.48 E-value=49 Score=23.33 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 10 g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
...+.|.|+..++=.++|+.++..+++.+....-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 4689999999999999999999999998876643
No 256
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=40.09 E-value=31 Score=26.74 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=27.9
Q ss_pred CEEEEEeCCCCEEEEEecC--CCcHHHHHHHHHHHhCCCC
Q 031613 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 38 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~--~~TV~~LK~~I~~~~gip~ 38 (156)
+.|.|..++|....++|+. ++|+.+|-+ ..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCc
Confidence 4688999999999999999 999999943 356654
No 257
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=39.49 E-value=11 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.608 Sum_probs=19.1
Q ss_pred cCCCCccCCceEEeEe--CCCCccCCceeEEEeec
Q 031613 120 ECPNAECGAGTFMANH--FDRHYCGKCGLTYVYQK 152 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h--~~r~~cg~c~~t~~~~~ 152 (156)
-|| |+. +.+.. ...+.|. ||.++-+++
T Consensus 6 ~C~---C~~--~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 6 RCD---CGR--ALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EET---TSC--CEEEETTCSEEEET-TTEEEECCS
T ss_pred ECC---CCC--EEEEcCCCcEEECC-CCCeeeece
Confidence 476 875 44444 4678898 999987664
No 258
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.01 E-value=50 Score=23.07 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=29.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
..+.|.|+..++=.++|+.++..+++.+....-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 578999999999999999999999998876643
No 259
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=38.73 E-value=57 Score=28.62 Aligned_cols=59 Identities=10% Similarity=0.254 Sum_probs=40.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhC--CCCCc--------eEEecCCe--ec------cCCCcccccccCCCCEEEEE
Q 031613 12 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--QL------EDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~g--ip~~~--------qrL~~~G~--~L------~d~~tL~~~gi~~~stI~l~ 70 (156)
...+.++++.|+.+|-+.|..+.. +.... ..++|... .| .-+.+|+++||.+|+.|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 356788888999999999988643 33222 34555432 11 12468999999999999886
No 260
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=37.88 E-value=13 Score=28.51 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=19.4
Q ss_pred ccCCCCccCCceEEeEeCC--CCccCCcee
Q 031613 119 KECPNAECGAGTFMANHFD--RHYCGKCGL 146 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~--r~~cg~c~~ 146 (156)
.-|| +||.-+-.....+ -++|..|+.
T Consensus 243 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCS--RCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCT--TTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 5698 9987776666654 478999984
No 261
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=37.37 E-value=28 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (156)
.|.+. .+|+.+.+++++.+|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45553 4899999999999999986544
No 262
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.20 E-value=4.6 Score=23.95 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=21.3
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCC--ceeEEEe
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGK--CGLTYVY 150 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~--c~~t~~~ 150 (156)
.-+.|| .|+.-+.-...=+...|.+ |+.-|++
T Consensus 5 ~~k~CP--~C~~~Iek~~GCnhmtC~~~~C~~~FCw 38 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDGGCNHMVCRNQNCKAEFCW 38 (60)
T ss_dssp CCCCCT--TTCCCCSSCCSCCSSSCCSSGGGSCCSS
T ss_pred cceECc--CCCCeeEeCCCCCcEEECCCCcCCEEee
Confidence 357899 8876554443346778887 8876654
No 263
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=36.06 E-value=30 Score=24.57 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (156)
.|.+. .+|+.+.+++++.+|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 56663 589999999999999998753
No 264
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=36.04 E-value=29 Score=22.40 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.1
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHH
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (156)
+.|...+|.+|.++|+.+.-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 3455668999999999998887777777644
No 265
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=35.66 E-value=31 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (156)
|.|.+. .+|+.+.+++++.+||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 445554 4799999999999999887654
No 266
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.13 E-value=9.4 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.575 Sum_probs=25.5
Q ss_pred EeeccCCCCccCCceEEeEeCCCCccCCceeEEEeec
Q 031613 116 RLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 152 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~~ 152 (156)
.+.+.|. +||.-+-+- -.+-..|..||+...|++
T Consensus 19 ~v~Y~C~--~Cg~~~~l~-~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 19 TMIYLCA--DCGARNTIQ-AKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCCBCS--SSCCBCCCC-SSSCCCCSSSCCCCCBCC
T ss_pred CeEEECC--CCCCeeecC-CCCceECCCCCcEEEEEe
Confidence 3678999 898766533 246788999999887765
No 267
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.02 E-value=14 Score=28.41 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=18.6
Q ss_pred ccCCCCccCCceEEeEeCC--CCccCCce
Q 031613 119 KECPNAECGAGTFMANHFD--RHYCGKCG 145 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~--r~~cg~c~ 145 (156)
.-|| +||.-+-.....+ -++|..|+
T Consensus 246 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCK--RCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCT--TTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCC--CCCCeEEEEEECCCCeEECCCCC
Confidence 5799 8987666555554 57899997
No 268
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.75 E-value=15 Score=28.15 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=19.9
Q ss_pred ccCCCCccCCceEEeEeCC--CCccCCcee
Q 031613 119 KECPNAECGAGTFMANHFD--RHYCGKCGL 146 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~--r~~cg~c~~ 146 (156)
.-|| +||.-+-.....+ -++|..|+.
T Consensus 236 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCP--ACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCT--TTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 6799 9997776666655 478999984
No 269
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=34.70 E-value=51 Score=21.03 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=38.5
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCce-EEecCCeec-cCCCcccccc--cCCCCEEEEEE
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 71 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~q-rL~~~G~~L-~d~~tL~~~g--i~~~stI~l~~ 71 (156)
.+-|+.+.|++++...|..+..+++++- -|+.+...+ ..+.+++++= -+++..+++..
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Y 84 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHY 84 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEE
Confidence 4678999999999999999999988654 444465544 3355554431 12455666654
No 270
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=34.65 E-value=35 Score=27.20 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=28.7
Q ss_pred EEeCCCC----EEEEEecCCCcHHHHHHHHHHHhCCC
Q 031613 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIP 37 (156)
Q Consensus 5 Vk~~~g~----~~~l~V~~~~TV~~LK~~I~~~~gip 37 (156)
|...+|+ ...+.+++++|+.+|-..|....|+.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~ 48 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK 48 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 4445676 89999999999999999999999984
No 271
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=34.17 E-value=14 Score=19.66 Aligned_cols=9 Identities=44% Similarity=1.283 Sum_probs=7.2
Q ss_pred CCCccCCce
Q 031613 122 PNAECGAGT 130 (156)
Q Consensus 122 p~~~c~~g~ 130 (156)
|++|||.|.
T Consensus 4 pssrcgsgg 12 (42)
T 2jr3_A 4 PSSRCGSGG 12 (42)
T ss_dssp CSCCTTTSS
T ss_pred ccccccCCC
Confidence 788998774
No 272
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.06 E-value=15 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.817 Sum_probs=18.9
Q ss_pred ccCCCCccCCceEEeEeCC--CCccCCce
Q 031613 119 KECPNAECGAGTFMANHFD--RHYCGKCG 145 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~--r~~cg~c~ 145 (156)
.-|| +||.-+-.....+ -++|..|+
T Consensus 241 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCR--VCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCT--TTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCC--CCCCEeeEEEECCCceEECCCCC
Confidence 5698 9987776666654 47899997
No 273
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=33.91 E-value=18 Score=25.66 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=21.7
Q ss_pred eccCCCCcc-C-----CceEEeEe---CCCCccCCceeEEEe
Q 031613 118 RKECPNAEC-G-----AGTFMANH---FDRHYCGKCGLTYVY 150 (156)
Q Consensus 118 ~~~cp~~~c-~-----~g~fma~h---~~r~~cg~c~~t~~~ 150 (156)
--.||||+| . .-.|-... .....|--|+..|..
T Consensus 105 v~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~~~ 146 (153)
T 2be7_D 105 VFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTFSK 146 (153)
T ss_dssp SSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEEEH
T ss_pred eEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEech
Confidence 367999999 3 24465533 225689999887753
No 274
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=33.54 E-value=31 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (156)
.|.+. .+|+.+.+++++.+|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45553 4899999999999999986554
No 275
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=33.29 E-value=16 Score=27.92 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.5
Q ss_pred ccCCCCccCCceEEeEeCC--CCccCCce
Q 031613 119 KECPNAECGAGTFMANHFD--RHYCGKCG 145 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~--r~~cg~c~ 145 (156)
.-|| +||.-+-.....+ -++|..|+
T Consensus 235 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCE--RCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCT--TTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCC--CCCCEeEEEEECCCCeEECCCCC
Confidence 4699 9987666666654 47899997
No 276
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=32.39 E-value=53 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.4
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE
Q 031613 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (156)
Q Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL 43 (156)
..+.|.|+...+=.++|+.++..+++.+....-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 122 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEe
Confidence 588999999999999999999999998876644
No 277
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=31.69 E-value=68 Score=23.49 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=38.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCe
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~ 48 (156)
+|.|...+|..+.++=-...-+..|++.+...++++.+.-.|...|.
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGw 132 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGW 132 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeecccc
Confidence 57788778888888877778899999999999999987666655553
No 278
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=31.53 E-value=14 Score=18.45 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.1
Q ss_pred CCCccCCceeEEEee
Q 031613 137 DRHYCGKCGLTYVYQ 151 (156)
Q Consensus 137 ~r~~cg~c~~t~~~~ 151 (156)
..|-||+|=..++.+
T Consensus 17 gdwccgrcirnecrn 31 (32)
T 4b2v_A 17 GDWCCGRCIRNECRN 31 (32)
T ss_dssp CCCCSSEEETTEEEC
T ss_pred cchhhhHHHHhhhcC
Confidence 579999997666543
No 279
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.45 E-value=10 Score=16.74 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=8.3
Q ss_pred CccCCceeEEEe
Q 031613 139 HYCGKCGLTYVY 150 (156)
Q Consensus 139 ~~cg~c~~t~~~ 150 (156)
+.|..|+.+|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 457888887743
No 280
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=31.10 E-value=95 Score=20.45 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCe--eccCCCcccccccCCCCEEEEEE
Q 031613 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHLVL 71 (156)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~--~L~d~~tL~~~gi~~~stI~l~~ 71 (156)
+.++++.+...++-++.|+-.-|-.++|+..++..+...|. +|+-...++.. +|..+.|..
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~Le~ 87 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVLDT 87 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEECC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEEee
Confidence 56888999999999999999999999999988887777775 55656666655 466766553
No 281
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=31.04 E-value=39 Score=21.68 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=25.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeeccCCCcc-ccccc
Q 031613 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNI 61 (156)
Q Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L~d~~tL-~~~gi 61 (156)
+.+..++......|++.|++..+++++. +.++..| .++|+
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGl 58 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGA 58 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCC
Confidence 4456777888999999999999988763 3444555 56665
No 282
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=30.59 E-value=58 Score=20.80 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|..+.+++.+.+||.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 46666678888899999999987653
No 283
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.55 E-value=16 Score=16.29 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=7.4
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|..|+.+|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 45777877763
No 284
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=29.48 E-value=23 Score=21.68 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=7.7
Q ss_pred CCccCCceeEE
Q 031613 138 RHYCGKCGLTY 148 (156)
Q Consensus 138 r~~cg~c~~t~ 148 (156)
-++|..||..|
T Consensus 36 ~~~C~~CGE~~ 46 (78)
T 3ga8_A 36 GLYCVHCEESI 46 (78)
T ss_dssp EEEETTTCCEE
T ss_pred eEECCCCCCEE
Confidence 56777777766
No 285
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.03 E-value=16 Score=16.14 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=6.9
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4577777776
No 286
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=28.75 E-value=88 Score=19.90 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=37.1
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeec-cCCCcccccc--cCCCCEEEEEE
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 71 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L-~d~~tL~~~g--i~~~stI~l~~ 71 (156)
.+-|+.+.|++++-.-|..+..+ +..-|+.+...+ ..+.+++++= -+++..|++.-
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 35799999999999999999988 455555566544 3355554431 12455666654
No 287
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=28.72 E-value=56 Score=22.96 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.6
Q ss_pred CCCCEEEEEecCCCcHHHHHHHH
Q 031613 8 LTGKTITLEVESSDTIDNVKAKI 30 (156)
Q Consensus 8 ~~g~~~~l~V~~~~TV~~LK~~I 30 (156)
.+|+.+.+++++.+|+.++-..+
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHT
T ss_pred ECCEEEEEecCCcCcHHHHHHHc
Confidence 48999999999999998877654
No 288
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=28.71 E-value=75 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (156)
+|++...+|....+++++.+|+.+.=.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 466665678888999999999877543
No 289
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.64 E-value=13 Score=16.30 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=6.6
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 3577777766
No 290
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=28.63 E-value=73 Score=25.69 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=38.1
Q ss_pred EEEEe------CCCCEEEEEecCCCcHHHHHHHHH--HHhCCCC---CceEEec----CC--eeccCCCcccc
Q 031613 3 IFVKT------LTGKTITLEVESSDTIDNVKAKIQ--DKEGIPP---DQQRLIF----AG--KQLEDGRTLAD 58 (156)
Q Consensus 3 I~Vk~------~~g~~~~l~V~~~~TV~~LK~~I~--~~~gip~---~~qrL~~----~G--~~L~d~~tL~~ 58 (156)
+.|+. ++|....+.+++++||.++-..|. .+.|+.+ +..-|.+ .+ .-|+++.+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 24 LKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp EEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred EEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 45666 677888999999999999999998 5667532 3333332 22 34666666655
No 291
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.41 E-value=39 Score=19.52 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=19.8
Q ss_pred cCCCCccCCceEEeEeCCCCccC--CceeEEEee
Q 031613 120 ECPNAECGAGTFMANHFDRHYCG--KCGLTYVYQ 151 (156)
Q Consensus 120 ~cp~~~c~~g~fma~h~~r~~cg--~c~~t~~~~ 151 (156)
.|| .|+..--.. .+...|. .|++.|-..
T Consensus 12 ~CP--~c~~~L~~~--~~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 12 ACP--ACHAPLEER--DAELICTGQDCGLAYPVR 41 (56)
T ss_dssp CCS--SSCSCEEEE--TTEEEECSSSCCCEEEEE
T ss_pred eCC--CCCCcceec--CCEEEcCCcCCCcEEeeE
Confidence 688 897543332 3778899 999988654
No 292
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=28.29 E-value=67 Score=21.54 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=21.5
Q ss_pred cceeeeeEeeeEEEcCCCeEEEeeccCCC
Q 031613 95 KKKVKLAVLQFYKVDDSGKVQRLRKECPN 123 (156)
Q Consensus 95 ~kk~k~~~l~~y~vd~~g~~~~~~~~cp~ 123 (156)
.+.+.+.....++++++|+|..+ +..|+
T Consensus 94 G~~~~~~g~dv~~fd~dGkI~~~-~~~~d 121 (131)
T 3er7_A 94 GSVFTQDGTDIARLNADGKIVYL-ANVPD 121 (131)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEE-EEEEC
T ss_pred CCEEEEeeeEEEEEcCCCcEEEE-EEccC
Confidence 34588888899999988999984 44453
No 293
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.20 E-value=17 Score=16.08 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=7.4
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|..|+.+|.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 45777877773
No 294
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=28.08 E-value=38 Score=22.39 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHH
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~ 33 (156)
+.|...+|-+|.++|+.+.-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4455668999999999988777766666543
No 295
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.60 E-value=26 Score=27.82 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=21.3
Q ss_pred eeccCCCCccCC--ceEEeEe-CCCCccCCceeEEE
Q 031613 117 LRKECPNAECGA--GTFMANH-FDRHYCGKCGLTYV 149 (156)
Q Consensus 117 ~~~~cp~~~c~~--g~fma~h-~~r~~cg~c~~t~~ 149 (156)
....|| .|+. .-+...| ..-..|+.||+..-
T Consensus 20 ~~~~Cp--~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 20 IVLTCP--ECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp --CCCS--SCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred cCCcCC--CCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 345899 8984 4555666 35678999998763
No 296
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.40 E-value=18 Score=15.99 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=7.3
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|..|+.+|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 35777777763
No 297
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=27.17 E-value=1.2e+02 Score=19.15 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.1
Q ss_pred EEEEeC-CCCEEEEEec--CCCcHHHHHHHHHHHhCCCCCceEEecCC
Q 031613 3 IFVKTL-TGKTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (156)
Q Consensus 3 I~Vk~~-~g~~~~l~V~--~~~TV~~LK~~I~~~~gip~~~qrL~~~G 47 (156)
|.||+- +.....+.++ ...+-.+|...++....++.....|.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 556654 3445556666 45899999999999999887777777743
No 298
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=26.95 E-value=32 Score=30.45 Aligned_cols=30 Identities=37% Similarity=0.993 Sum_probs=21.2
Q ss_pred EeeccCCCCccCCceEEeEeCCCCccC--Cc-eeEE
Q 031613 116 RLRKECPNAECGAGTFMANHFDRHYCG--KC-GLTY 148 (156)
Q Consensus 116 ~~~~~cp~~~c~~g~fma~h~~r~~cg--~c-~~t~ 148 (156)
+.|+.|| .||.. |-..-.+|.+|| -| .|+|
T Consensus 18 ~~r~~c~--~cg~~-fwt~~~~r~~cgd~~c~~y~f 50 (739)
T 2ztg_A 18 FVRKRCP--KCGKH-FWTADPEREICGDPPCESYSF 50 (739)
T ss_dssp CEEECCC--SSSSC-EEECCSSCCCCCSSSSCCCCC
T ss_pred cEEeECC--CCCCc-eecCCCCcCCCCCCCCCCccc
Confidence 3579999 99854 655556899999 35 3444
No 299
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.89 E-value=20 Score=20.83 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=6.8
Q ss_pred CCccCCceeEE
Q 031613 138 RHYCGKCGLTY 148 (156)
Q Consensus 138 r~~cg~c~~t~ 148 (156)
++.|--|||.|
T Consensus 3 ~y~C~~CGyvY 13 (55)
T 2v3b_B 3 KWQCVVCGFIY 13 (55)
T ss_dssp EEEETTTCCEE
T ss_pred cEEeCCCCeEE
Confidence 45666677654
No 300
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=26.85 E-value=30 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=21.1
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCceeEEEee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 151 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~~ 151 (156)
.-.|+ .||. .+.... +-..|..||.++..+
T Consensus 140 ~a~~~--~~g~-~m~~~~-~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 140 RALCS--NCKT-EMVREG-DILKCPECGRVEKRK 169 (179)
T ss_dssp ECBCT--TTCC-BCEECS-SSEECSSSCCEECCC
T ss_pred Eeccc--ccCC-ceEECC-CEEECCCCCCEEEEe
Confidence 35677 7864 333344 889999999998654
No 301
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.74 E-value=17 Score=16.24 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=7.4
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|..|+.+|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 45777877763
No 302
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=26.48 E-value=75 Score=20.30 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|+...+++++.+|+.+.=
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45565568999899999999997743
No 303
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=25.85 E-value=23 Score=27.11 Aligned_cols=31 Identities=32% Similarity=0.993 Sum_probs=21.4
Q ss_pred eccCCCCccCCceEEeEeCC------CCccCCceeEEEeec
Q 031613 118 RKECPNAECGAGTFMANHFD------RHYCGKCGLTYVYQK 152 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~------r~~cg~c~~t~~~~~ 152 (156)
+.-|| .||..-. .|+. ..+|+.|+.-|-.+-
T Consensus 34 n~yCP--nCG~~~l--~~f~nN~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 34 QSYCP--NCGNNPL--NHFENNRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp HCCCT--TTCCSSC--EEC----CCCEEECTTTCCEEEEEE
T ss_pred CCcCC--CCCChhh--hhccCCCcccccccCCcchhheecc
Confidence 67899 8986432 4542 489999998875543
No 304
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=25.59 E-value=83 Score=29.19 Aligned_cols=69 Identities=29% Similarity=0.267 Sum_probs=44.2
Q ss_pred EEEEeCCCCEEEEEecCCCcHHHHHHHHHHHhC--------CCCCceEEec-C--Ce--eccCC-CcccccccCCCCEEE
Q 031613 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QLEDG-RTLADYNIQKESTLH 68 (156)
Q Consensus 3 I~Vk~~~g~~~~l~V~~~~TV~~LK~~I~~~~g--------ip~~~qrL~~-~--G~--~L~d~-~tL~~~gi~~~stI~ 68 (156)
|.+=.++|-.+.++|+.++|+++||++|.++.. ..+++-.+.+ + |. .+.|+ ..|.++..- -..+.
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~-~p~l~ 132 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF-LPVLK 132 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-SSCEE
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc-ceEEE
Confidence 334456899999999999999999999976622 1234444443 2 32 45454 677777543 34555
Q ss_pred EEEe
Q 031613 69 LVLR 72 (156)
Q Consensus 69 l~~~ 72 (156)
|+-+
T Consensus 133 lve~ 136 (1092)
T 2y3a_A 133 LVTR 136 (1092)
T ss_dssp EEES
T ss_pred EEec
Confidence 5544
No 305
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=25.47 E-value=23 Score=24.96 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred eccCCCCcc-C-----CceEEeEe--CCCCccCCceeEE
Q 031613 118 RKECPNAEC-G-----AGTFMANH--FDRHYCGKCGLTY 148 (156)
Q Consensus 118 ~~~cp~~~c-~-----~g~fma~h--~~r~~cg~c~~t~ 148 (156)
--.||||+| . .-.|-... .....|--|+..|
T Consensus 105 vl~C~Np~CITn~E~v~s~F~v~~~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 105 TLKCTNPNCITNKEKVRGKFKIESKNPLKIRCYYCEKFL 143 (149)
T ss_dssp SSCCSCTTSGGGTSCCCCEEEEEEETTEEEEETTTCCBC
T ss_pred eEEcCCCCCCcCCcccccEEEEEeCCCCEEEeeCCCcCh
Confidence 367999999 3 24465433 2356788887765
No 306
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.40 E-value=17 Score=16.39 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=6.6
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 4577777766
No 307
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=25.10 E-value=1.1e+02 Score=19.36 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|....+++++.+||.+.=
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987653
No 308
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.10 E-value=24 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=4.8
Q ss_pred CCccCCceeE
Q 031613 138 RHYCGKCGLT 147 (156)
Q Consensus 138 r~~cg~c~~t 147 (156)
+|.|--|||.
T Consensus 35 ~y~C~vCGyv 44 (87)
T 1s24_A 35 KWICITCGHI 44 (87)
T ss_dssp EEEETTTTEE
T ss_pred eEECCCCCeE
Confidence 4445555543
No 309
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.05 E-value=21 Score=15.82 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=6.6
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+..|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 3477777766
No 310
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=25.03 E-value=34 Score=23.62 Aligned_cols=29 Identities=28% Similarity=0.666 Sum_probs=21.1
Q ss_pred CCeEEEeeccCCCCccCCceEEeEeCCCCccCCceeE
Q 031613 111 SGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 147 (156)
Q Consensus 111 ~g~~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t 147 (156)
.|++. -..|+ .||. + .|..|..|..|+-.
T Consensus 42 ~grL~--~~rC~--~CG~-~---~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 42 QNKII--GSKCS--KCGR-I---FVPARSYCEHCFVK 70 (145)
T ss_dssp TTCCE--EEECT--TTCC-E---EESCCSEETTTTEE
T ss_pred cCeEE--EEEeC--CCCc-E---EcCchhhCcCCCCC
Confidence 46554 57899 8984 2 35689999999854
No 311
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=24.93 E-value=29 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHhCCCCCceEEe--cCCeeccCCCcccccc
Q 031613 21 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYN 60 (156)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~qrL~--~~G~~L~d~~tL~~~g 60 (156)
.++.||+.+..+..++. ...+|. -+|..++|+.-+..+.
T Consensus 54 ~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp 94 (122)
T 1d4b_A 54 ATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE 94 (122)
T ss_dssp CCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS
T ss_pred CCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC
Confidence 57899999999999994 334444 5899998886555443
No 312
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=24.79 E-value=36 Score=23.80 Aligned_cols=25 Identities=32% Similarity=0.907 Sum_probs=18.2
Q ss_pred EEEeeccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 114 VQRLRKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 114 ~~~~~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
.......|| .|++ .+++++|..|-+
T Consensus 67 ~q~~~~~C~--~Cg~------~f~~Y~C~~C~l 91 (143)
T 2dkt_A 67 LQHAQQTCE--DCST------LFGEYYCSICHL 91 (143)
T ss_dssp EECSCSBCS--SSCC------BSCSEECSSSCC
T ss_pred cccccCcCC--CCCc------cceeeEeceeec
Confidence 344456899 7873 578899999975
No 313
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=24.77 E-value=1.2e+02 Score=20.26 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHHh-CCCCCceEEecCC
Q 031613 21 DTIDNVKAKIQDKE-GIPPDQQRLIFAG 47 (156)
Q Consensus 21 ~TV~~LK~~I~~~~-gip~~~qrL~~~G 47 (156)
.|..+|+.+|+..+ ++......|.|..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 49999999999998 5665667777643
No 314
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.05 E-value=24 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=8.4
Q ss_pred eccCCCCccCCceEEeEeCC
Q 031613 118 RKECPNAECGAGTFMANHFD 137 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~ 137 (156)
...|| .||. ..-.+|.-
T Consensus 18 k~~CP--~CG~-~T~~~hPa 34 (60)
T 2apo_B 18 KEICP--KCGE-KTVIPKPP 34 (60)
T ss_dssp SSBCS--SSCS-BCBCCCCC
T ss_pred cccCc--CCCC-cCCCCCCC
Confidence 45566 5663 33334543
No 315
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.01 E-value=23 Score=22.33 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=6.5
Q ss_pred CCCccCCceeEE
Q 031613 137 DRHYCGKCGLTY 148 (156)
Q Consensus 137 ~r~~cg~c~~t~ 148 (156)
.+|.|--|||.|
T Consensus 26 ~~y~C~vCGyvY 37 (81)
T 2kn9_A 26 KLFRCIQCGFEY 37 (81)
T ss_dssp CEEEETTTCCEE
T ss_pred ceEEeCCCCEEE
Confidence 345566666544
No 316
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=25 Score=17.08 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=8.8
Q ss_pred CccCCceeEEEe
Q 031613 139 HYCGKCGLTYVY 150 (156)
Q Consensus 139 ~~cg~c~~t~~~ 150 (156)
+.|..|+++|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elm_A 10 YYCSQCHYSSIT 21 (37)
T ss_dssp EECSSSSCEEEC
T ss_pred eECCCCCcccCC
Confidence 568888888753
No 317
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=23.73 E-value=1.1e+02 Score=19.37 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|....+++++.+||.+.=
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56776678888899999999987754
No 318
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.31 E-value=71 Score=17.21 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCCCCC
Q 031613 23 IDNVKAKIQDKEGIPPD 39 (156)
Q Consensus 23 V~~LK~~I~~~~gip~~ 39 (156)
+.+|-..+++++||++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 34566677889999864
No 319
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.26 E-value=47 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=20.0
Q ss_pred eccCCCCccCCceEEeEeCCCCccCCcee
Q 031613 118 RKECPNAECGAGTFMANHFDRHYCGKCGL 146 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r~~cg~c~~ 146 (156)
.-.|. .|++-.-...|.-.+.|+.|+-
T Consensus 37 ~I~Cn--DC~~~s~v~~h~lg~kC~~C~S 63 (79)
T 2k2d_A 37 DILCN--DCNGRSTVQFHILGMKCKICES 63 (79)
T ss_dssp EEEES--SSCCEEEEECCTTCCCCTTTSC
T ss_pred EEECC--CCCCCccCCceeecccCcCCCC
Confidence 45788 7986555556777788999984
No 320
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.26 E-value=95 Score=17.52 Aligned_cols=30 Identities=37% Similarity=0.745 Sum_probs=18.5
Q ss_pred eccCCCCccCCceEE--eEeC---C-----CCccCCceeEEE
Q 031613 118 RKECPNAECGAGTFM--ANHF---D-----RHYCGKCGLTYV 149 (156)
Q Consensus 118 ~~~cp~~~c~~g~fm--a~h~---~-----r~~cg~c~~t~~ 149 (156)
...|| .||..... -.+. | .+.|-+||+++.
T Consensus 15 ~~~Cp--~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCP--KCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCT--TTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECC--CCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 57799 89754332 2221 1 368999998763
No 321
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.90 E-value=1.5e+02 Score=19.37 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=33.2
Q ss_pred EEEEeC-CCCEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEecCC
Q 031613 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (156)
Q Consensus 3 I~Vk~~-~g~~~~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 47 (156)
|.||.. .|+..-|.++...+..+|.+++.+.+|-+ .-|.|-.
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n 51 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTN 51 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEec
Confidence 556553 57789999999999999999999999974 3455543
No 322
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=22.84 E-value=20 Score=20.61 Aligned_cols=21 Identities=38% Similarity=0.899 Sum_probs=10.9
Q ss_pred eccCCCCcc-CCceEEeEeCCCCccCCce
Q 031613 118 RKECPNAEC-GAGTFMANHFDRHYCGKCG 145 (156)
Q Consensus 118 ~~~cp~~~c-~~g~fma~h~~r~~cg~c~ 145 (156)
...|| .| |.|... ...|..|+
T Consensus 9 ~~~C~--~C~GsG~~i-----~~~C~~C~ 30 (53)
T 3lcz_A 9 ETTCP--NCNGSGREE-----PEPCPKCL 30 (53)
T ss_dssp EEECT--TTTTSCEET-----TEECTTTT
T ss_pred eccCc--CCcccccCC-----CCcCCCCC
Confidence 34566 66 555432 24566664
No 323
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.76 E-value=20 Score=15.87 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=6.3
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566677665
No 324
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.75 E-value=22 Score=20.32 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=6.0
Q ss_pred CCccCCceeEE
Q 031613 138 RHYCGKCGLTY 148 (156)
Q Consensus 138 r~~cg~c~~t~ 148 (156)
++.|--|||.|
T Consensus 3 ~y~C~~CGyvY 13 (52)
T 1e8j_A 3 IYVCTVCGYEY 13 (52)
T ss_dssp CEECSSSCCCC
T ss_pred cEEeCCCCeEE
Confidence 45566666543
No 325
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=22.46 E-value=97 Score=20.71 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK 27 (156)
+|++...+|....+++.+.+||.+.=
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56776678888999999999998743
No 326
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=22.31 E-value=1.1e+02 Score=18.86 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCEEEEEecCCCcHHHHHH
Q 031613 1 MQIFVKTLTGKTITLEVESSDTIDNVKA 28 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (156)
++|++...+| ...+++++.+|+.+.=.
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~ 27 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAE 27 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHH
Confidence 3677765555 67889999999987554
No 327
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=22.17 E-value=1.6e+02 Score=18.61 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=40.8
Q ss_pred CEEEEEeCCCCEEEEEec-CCCcHHHHHHHHHHHh----CCCCCc-e---EEec-CCeeccCCCcccccccCCCCEEEEE
Q 031613 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKE----GIPPDQ-Q---RLIF-AGKQLEDGRTLADYNIQKESTLHLV 70 (156)
Q Consensus 1 M~I~Vk~~~g~~~~l~V~-~~~TV~~LK~~I~~~~----gip~~~-q---rL~~-~G~~L~d~~tL~~~gi~~~stI~l~ 70 (156)
|+|+|+. .+..+.+... .+.||.+|-++...++ +-.++. . .|.+ +|.+|+.+..|.+.= .+++.|..+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dVl-dD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVA-DDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHHS-CTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhhc-cCcceEEEE
Confidence 7889976 3456667664 4569999987765443 332322 2 2234 777888777776652 345555433
No 328
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.05 E-value=27 Score=19.95 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=5.9
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|--|||.|
T Consensus 3 ~~C~~CGyvY 12 (52)
T 1yk4_A 3 LSCKICGYIY 12 (52)
T ss_dssp EEESSSSCEE
T ss_pred EEeCCCCeEE
Confidence 4566666554
No 329
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.00 E-value=27 Score=16.37 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=8.3
Q ss_pred CCccCCceeEEE
Q 031613 138 RHYCGKCGLTYV 149 (156)
Q Consensus 138 r~~cg~c~~t~~ 149 (156)
.+.|.-|+.+|.
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 356788887773
No 330
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=21.84 E-value=83 Score=20.22 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEecCCCcHHHHHHHHHHHhCCCCCceEEecCCeec-cCCCcccccc--cCCCCEEEEEE
Q 031613 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 71 (156)
Q Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~qrL~~~G~~L-~d~~tL~~~g--i~~~stI~l~~ 71 (156)
.+-|+.+.|++++...|..+..++ ..-|+.+...+ ..+.+++++= -+++..|++..
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Y 89 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNY 89 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEE
Confidence 467899999999999999999887 44444444244 3455555441 12244566654
No 331
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.77 E-value=27 Score=19.50 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=8.0
Q ss_pred CCCccCCceeEE
Q 031613 137 DRHYCGKCGLTY 148 (156)
Q Consensus 137 ~r~~cg~c~~t~ 148 (156)
.++.|.-|||.|
T Consensus 3 ~~y~C~vCGyvy 14 (46)
T 6rxn_A 3 QKYVCNVCGYEY 14 (46)
T ss_dssp CCEEETTTCCEE
T ss_pred CEEECCCCCeEE
Confidence 356677777665
No 332
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=21.72 E-value=1e+02 Score=19.18 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~~ 29 (156)
+|+|...++....+++++..|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 4556555577788999999999876543
No 333
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.55 E-value=1e+02 Score=18.89 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEeCCCCEEEEEecCCCcHHHHHH
Q 031613 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (156)
Q Consensus 2 ~I~Vk~~~g~~~~l~V~~~~TV~~LK~ 28 (156)
+|++...+| ...+++++.+||.+.=.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 566765666 67889999999977543
No 334
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.45 E-value=11 Score=18.49 Aligned_cols=18 Identities=28% Similarity=0.742 Sum_probs=12.0
Q ss_pred eeccCCCCccCCceEEeEeCC
Q 031613 117 LRKECPNAECGAGTFMANHFD 137 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~ 137 (156)
.+..|| -|. -.|-|+|-+
T Consensus 5 f~vqcp--vcq-q~mpaahin 22 (29)
T 3vhs_A 5 FQVQCP--VCQ-QMMPAAHIN 22 (29)
T ss_dssp CEEECT--TTC-CEEEGGGHH
T ss_pred eeeeCh--HHH-HhCcHHHHH
Confidence 478899 897 445566643
No 335
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.35 E-value=28 Score=16.40 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=7.9
Q ss_pred CccCCceeEEE
Q 031613 139 HYCGKCGLTYV 149 (156)
Q Consensus 139 ~~cg~c~~t~~ 149 (156)
+.|..|+.+|.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 56888888773
No 336
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.33 E-value=21 Score=15.64 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=5.9
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3466666655
No 337
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.17 E-value=23 Score=26.12 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=18.2
Q ss_pred ccCCCCccCCceEEeEeCCCCccCCceeEEEe
Q 031613 119 KECPNAECGAGTFMANHFDRHYCGKCGLTYVY 150 (156)
Q Consensus 119 ~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~ 150 (156)
..|+ .|+.. | ..-.-||+|-.||..|+-
T Consensus 162 ~~C~--~C~~~-F-~~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 162 RVCH--RCRVE-F-TFTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp SBCT--TTCCB-C-CSSSCCEECTTTCCEECS
T ss_pred CccC--CCCCc-c-CCcccccccCCcCCEECh
Confidence 5788 78632 2 111258999999988764
No 338
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.04 E-value=26 Score=21.35 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=6.5
Q ss_pred CCCccCCcee
Q 031613 137 DRHYCGKCGL 146 (156)
Q Consensus 137 ~r~~cg~c~~ 146 (156)
+.|.|.-|+-
T Consensus 39 ddw~CP~Cga 48 (70)
T 1dx8_A 39 DSFMCPACRS 48 (70)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4567777764
No 339
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.99 E-value=35 Score=20.24 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=9.5
Q ss_pred eccCCCCccCCceEEeEeCCC
Q 031613 118 RKECPNAECGAGTFMANHFDR 138 (156)
Q Consensus 118 ~~~cp~~~c~~g~fma~h~~r 138 (156)
...|| .||.-.+ .+|.-|
T Consensus 17 k~~CP--~CG~~t~-~ahPar 34 (60)
T 2aus_D 17 KETCP--VCGEKTK-VAHPPR 34 (60)
T ss_dssp SSBCT--TTCSBCE-ESSCCC
T ss_pred cccCc--CCCCccC-CCCCCC
Confidence 56677 6764333 336443
No 340
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=20.45 E-value=1.1e+02 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.5
Q ss_pred eeeeEeeeEEEcCCCeEEEeecc
Q 031613 98 VKLAVLQFYKVDDSGKVQRLRKE 120 (156)
Q Consensus 98 ~k~~~l~~y~vd~~g~~~~~~~~ 120 (156)
+.+.....|+++++|+|.+.+.-
T Consensus 105 ~~~~~~~~~~~~~dGkI~~~~~y 127 (139)
T 2a15_A 105 SEVRGVFTYRVNKAGLITNMRGY 127 (139)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEEECCCCeEEEeehh
Confidence 55666778899778999986643
No 341
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.42 E-value=22 Score=15.73 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=6.2
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|..|+.+|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 4566676665
No 342
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.41 E-value=35 Score=19.72 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=4.9
Q ss_pred CccCCceeEE
Q 031613 139 HYCGKCGLTY 148 (156)
Q Consensus 139 ~~cg~c~~t~ 148 (156)
+.|.-|||.|
T Consensus 4 y~C~vCGyvY 13 (54)
T 4rxn_A 4 YTCTVCGYIY 13 (54)
T ss_dssp EEETTTCCEE
T ss_pred eECCCCCeEE
Confidence 4455555433
No 343
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.30 E-value=66 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.574 Sum_probs=19.9
Q ss_pred eeccCCCCccCCceEEeEeCCCCccCCceeEEEe
Q 031613 117 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY 150 (156)
Q Consensus 117 ~~~~cp~~~c~~g~fma~h~~r~~cg~c~~t~~~ 150 (156)
+.-.|| .|+. -|..-.+.++|..|+..|..
T Consensus 31 M~~~CP--~Cq~--eL~~~g~~~hC~~C~~~f~~ 60 (101)
T 2jne_A 31 MELHCP--QCQH--VLDQDNGHARCRSCGEFIEM 60 (101)
T ss_dssp CCCBCS--SSCS--BEEEETTEEEETTTCCEEEE
T ss_pred ccccCc--cCCC--cceecCCEEECccccchhhc
Confidence 456899 8976 34443445559999887743
Done!