Query 031614
Match_columns 156
No_of_seqs 116 out of 845
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 8.2E-39 1.8E-43 251.0 11.2 106 17-126 11-123 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1E-32 2.2E-37 195.0 4.9 82 33-114 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.6 4.6E-07 1E-11 67.2 9.8 70 47-121 47-119 (119)
4 PF00127 Copper-bind: Copper b 98.5 4.3E-07 9.3E-12 65.0 5.9 72 48-121 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.2 8E-06 1.7E-10 58.5 8.1 72 48-121 18-99 (99)
6 TIGR02375 pseudoazurin pseudoa 98.1 2.9E-05 6.4E-10 57.9 8.5 70 48-122 16-88 (116)
7 COG3794 PetE Plastocyanin [Ene 98.0 3.6E-05 7.8E-10 58.5 7.9 68 48-122 55-128 (128)
8 TIGR03102 halo_cynanin halocya 97.9 6.2E-05 1.3E-09 56.1 8.0 68 48-121 43-115 (115)
9 TIGR02657 amicyanin amicyanin. 97.4 0.00096 2.1E-08 46.2 7.6 69 48-121 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.1 0.0026 5.6E-08 49.1 7.3 72 49-121 54-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.8 0.0065 1.4E-07 49.3 7.8 73 51-123 90-188 (196)
12 PF13473 Cupredoxin_1: Cupredo 96.5 0.0034 7.3E-08 44.9 3.8 69 31-120 28-104 (104)
13 TIGR03094 sulfo_cyanin sulfocy 95.8 0.056 1.2E-06 43.6 7.9 72 52-123 90-187 (195)
14 PF00812 Ephrin: Ephrin; Inte 95.3 0.013 2.9E-07 45.3 2.5 93 27-121 4-144 (145)
15 KOG3858 Ephrin, ligand for Eph 94.7 0.12 2.6E-06 43.0 6.7 100 21-123 18-162 (233)
16 COG4454 Uncharacterized copper 94.2 0.092 2E-06 41.3 4.6 75 47-122 63-158 (158)
17 PF07172 GRP: Glycine rich pro 91.3 0.17 3.8E-06 36.5 2.4 27 1-29 1-28 (95)
18 TIGR02695 azurin azurin. Azuri 91.2 0.93 2E-05 34.4 6.4 33 86-119 86-124 (125)
19 TIGR03096 nitroso_cyanin nitro 90.7 0.55 1.2E-05 36.0 4.8 56 46-110 60-122 (135)
20 PRK02888 nitrous-oxide reducta 89.0 1.3 2.9E-05 41.7 6.8 65 48-122 556-634 (635)
21 PLN02604 oxidoreductase 88.5 2.8 6E-05 38.8 8.5 76 48-123 56-145 (566)
22 PLN02354 copper ion binding / 84.8 5.4 0.00012 36.9 8.3 74 49-123 60-147 (552)
23 TIGR02866 CoxB cytochrome c ox 83.3 2.7 5.9E-05 33.5 5.1 66 48-123 118-193 (201)
24 PF00116 COX2: Cytochrome C ox 80.5 3.1 6.7E-05 30.7 4.2 64 47-120 46-119 (120)
25 TIGR02376 Cu_nitrite_red nitri 80.5 6.8 0.00015 33.5 6.8 73 49-124 61-148 (311)
26 COG1622 CyoA Heme/copper-type 79.6 6.4 0.00014 32.9 6.2 66 49-124 139-214 (247)
27 PF02839 CBM_5_12: Carbohydrat 76.4 1.7 3.6E-05 25.8 1.4 18 42-59 1-18 (41)
28 PF07732 Cu-oxidase_3: Multico 74.7 4.1 8.8E-05 29.9 3.3 75 48-123 27-116 (117)
29 PLN00044 multi-copper oxidase- 69.7 26 0.00057 32.9 8.1 70 49-123 62-149 (596)
30 MTH00047 COX2 cytochrome c oxi 67.5 7.6 0.00017 31.3 3.7 65 49-123 118-192 (194)
31 TIGR03388 ascorbase L-ascorbat 62.5 24 0.00053 32.4 6.4 76 48-123 33-122 (541)
32 PLN02191 L-ascorbate oxidase 62.2 28 0.00061 32.4 6.8 75 49-123 56-144 (574)
33 PF09792 But2: Ubiquitin 3 bin 51.3 47 0.001 25.4 5.4 31 91-124 100-130 (143)
34 PRK13838 conjugal transfer pil 50.6 23 0.0005 28.0 3.7 16 48-63 48-63 (176)
35 MTH00140 COX2 cytochrome c oxi 50.3 24 0.00052 28.8 3.9 31 91-123 183-216 (228)
36 cd06555 ASCH_PF0470_like ASC-1 48.9 9.4 0.0002 28.2 1.1 29 49-77 30-61 (109)
37 KOG2315 Predicted translation 48.5 33 0.00072 32.1 4.8 60 45-104 209-277 (566)
38 PF12961 DUF3850: Domain of Un 45.2 13 0.00029 25.5 1.4 13 48-60 26-38 (72)
39 MTH00154 COX2 cytochrome c oxi 44.8 32 0.00069 28.2 3.8 30 91-122 183-215 (227)
40 PTZ00047 cytochrome c oxidase 43.4 35 0.00077 27.0 3.7 30 91-122 116-148 (162)
41 TIGR01480 copper_res_A copper- 42.8 96 0.0021 29.1 7.0 83 33-120 488-586 (587)
42 MTH00168 COX2 cytochrome c oxi 42.6 36 0.00077 27.8 3.8 30 91-122 183-215 (225)
43 MTH00139 COX2 cytochrome c oxi 40.9 38 0.00081 27.6 3.6 30 91-122 183-215 (226)
44 MTH00129 COX2 cytochrome c oxi 40.9 36 0.00079 27.9 3.6 30 91-122 183-215 (230)
45 PLN02835 oxidoreductase 40.7 1.2E+02 0.0026 28.0 7.3 73 49-122 62-148 (539)
46 PRK11528 hypothetical protein; 40.6 61 0.0013 27.2 4.9 41 26-69 21-70 (254)
47 MTH00117 COX2 cytochrome c oxi 40.3 43 0.00093 27.4 3.9 30 91-122 183-215 (227)
48 PLN02168 copper ion binding / 39.1 1.2E+02 0.0027 28.1 7.1 75 49-124 59-147 (545)
49 MTH00098 COX2 cytochrome c oxi 38.7 44 0.00094 27.5 3.7 30 91-122 183-215 (227)
50 smart00495 ChtBD3 Chitin-bindi 38.1 21 0.00045 21.0 1.3 18 42-59 1-18 (41)
51 MTH00038 COX2 cytochrome c oxi 38.0 47 0.001 27.2 3.8 30 91-122 183-215 (229)
52 TIGR01433 CyoA cytochrome o ub 36.9 49 0.0011 27.1 3.8 66 48-122 140-214 (226)
53 TIGR01480 copper_res_A copper- 36.7 1.8E+02 0.004 27.2 7.9 74 48-123 77-163 (587)
54 TIGR02228 sigpep_I_arch signal 36.5 76 0.0016 24.6 4.6 23 48-70 58-85 (158)
55 PRK10378 inactive ferrous ion 35.8 1.2E+02 0.0027 26.9 6.3 27 91-122 91-117 (375)
56 PF06462 Hyd_WA: Propeller; I 35.4 82 0.0018 17.9 3.5 25 91-115 3-27 (32)
57 MTH00023 COX2 cytochrome c oxi 34.1 56 0.0012 27.0 3.7 31 91-123 194-227 (240)
58 PLN02792 oxidoreductase 33.7 1.7E+02 0.0037 27.1 7.1 73 49-122 49-135 (536)
59 MTH00008 COX2 cytochrome c oxi 33.5 59 0.0013 26.7 3.7 31 91-123 183-216 (228)
60 TIGR01432 QOXA cytochrome aa3 33.4 59 0.0013 26.2 3.7 31 91-123 173-206 (217)
61 PF10377 ATG11: Autophagy-rela 33.1 28 0.00061 26.1 1.6 18 49-66 41-58 (129)
62 TIGR03389 laccase laccase, pla 33.1 1.8E+02 0.0039 26.7 7.1 74 50-124 37-124 (539)
63 KOG3653 Transforming growth fa 33.0 1.1E+02 0.0023 28.6 5.5 19 97-115 111-130 (534)
64 MTH00051 COX2 cytochrome c oxi 32.2 58 0.0013 26.8 3.4 30 91-122 187-219 (234)
65 COG3241 Azurin [Energy product 31.7 38 0.00082 26.1 2.1 33 86-119 110-148 (151)
66 PF10731 Anophelin: Thrombin i 31.5 44 0.00096 22.4 2.1 28 1-32 1-28 (65)
67 PF05382 Amidase_5: Bacterioph 31.2 1.1E+02 0.0023 23.7 4.5 35 49-83 74-114 (145)
68 MTH00076 COX2 cytochrome c oxi 30.9 66 0.0014 26.4 3.6 30 91-122 183-215 (228)
69 KOG3342 Signal peptidase I [In 30.4 21 0.00045 28.4 0.5 22 49-70 76-102 (180)
70 PF08980 DUF1883: Domain of un 30.2 7.9 0.00017 28.0 -1.7 72 48-121 8-86 (94)
71 COG3627 PhnJ Uncharacterized e 30.0 34 0.00073 28.7 1.7 24 90-113 257-280 (291)
72 PLN02991 oxidoreductase 28.8 2.9E+02 0.0064 25.7 7.8 81 49-129 61-154 (543)
73 KOG1546 Metacaspase involved i 28.7 34 0.00075 30.2 1.6 14 50-63 134-147 (362)
74 KOG1263 Multicopper oxidases [ 28.3 5.1E+02 0.011 24.4 9.7 110 1-124 2-149 (563)
75 MTH00027 COX2 cytochrome c oxi 27.4 87 0.0019 26.4 3.8 31 91-123 217-250 (262)
76 PLN02792 oxidoreductase 26.9 2.4E+02 0.0052 26.1 6.9 75 50-124 406-507 (536)
77 PF02362 B3: B3 DNA binding do 26.9 44 0.00095 22.7 1.6 16 48-63 71-86 (100)
78 PF06024 DUF912: Nucleopolyhed 26.8 60 0.0013 23.2 2.4 19 138-156 68-86 (101)
79 TIGR02771 TraF_Ti conjugative 26.7 72 0.0016 24.9 3.0 37 26-63 19-59 (171)
80 MTH00185 COX2 cytochrome c oxi 26.2 95 0.0021 25.5 3.7 30 91-122 183-215 (230)
81 MTH00080 COX2 cytochrome c oxi 24.6 1.1E+02 0.0023 25.3 3.7 31 91-123 186-219 (231)
82 PRK10927 essential cell divisi 24.4 60 0.0013 28.4 2.3 20 137-156 35-54 (319)
83 PF02439 Adeno_E3_CR2: Adenovi 23.9 37 0.00081 20.6 0.7 24 132-155 3-26 (38)
84 PF04225 OapA: Opacity-associa 22.8 89 0.0019 21.6 2.6 22 49-70 41-62 (85)
85 COG4043 Preprotein translocase 22.7 37 0.00079 25.1 0.6 15 47-61 30-44 (111)
86 PF15020 CATSPERD: Cation chan 22.1 1.7E+02 0.0037 28.5 5.0 82 43-134 592-691 (733)
87 PF02933 CDC48_2: Cell divisio 21.8 72 0.0016 20.5 1.8 16 48-63 16-31 (64)
88 PF01345 DUF11: Domain of unkn 21.6 68 0.0015 21.0 1.7 21 42-62 28-48 (76)
89 COG4446 Uncharacterized protei 21.4 76 0.0016 24.3 2.1 25 46-70 87-111 (141)
90 PF07731 Cu-oxidase_2: Multico 21.1 55 0.0012 23.5 1.3 32 91-122 105-136 (138)
91 PF04246 RseC_MucC: Positive r 21.1 2.1E+02 0.0046 20.9 4.5 24 100-123 42-65 (135)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=8.2e-39 Score=251.05 Aligned_cols=106 Identities=31% Similarity=0.530 Sum_probs=96.0
Q ss_pred HHHHhhhhhhhhhc----cCcccCCCccchhcccCCCeEEeCCEEEEeecC-CCeeEEeCcccCCCCCCCCcc--ccCCc
Q 031614 17 LAFLAASAAAAEYK----LHWIVPTSADYYTNWISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSV--VASHP 89 (156)
Q Consensus 17 ~~~l~~~a~A~~~~----~gW~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~H~V~~V~~~~y~~C~~~~~~--~~~G~ 89 (156)
++++...++|++|+ .||+.+.| |++|+++++|++||+|+|+|++ .|||+||++++|++|+.++++ +++|+
T Consensus 11 ~~~~~~~~~a~~~~VGd~~GW~~~~~---Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~ 87 (167)
T PLN03148 11 ALFSASATTATDHIVGANKGWNPGIN---YTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK 87 (167)
T ss_pred HHHhhhhccceEEEeCCCCCcCCCCC---hhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC
Confidence 33455677888999 68997777 9999999999999999999998 799999999999999999998 99999
Q ss_pred eEEEeCCcccEEEEcCCCCCcCCCCeEEEEecCCCCC
Q 031614 90 VQIQLNSTGSRYFICTVDDHCGRGQKLAITVKNSGND 126 (156)
Q Consensus 90 ~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~~~~~~ 126 (156)
+.|+|+++|++||||+ ++||++|||+.|+|.+.+||
T Consensus 88 d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~~p 123 (167)
T PLN03148 88 DFIPLNKAKRYYFICG-NGQCFNGMKVTILVHPLPPP 123 (167)
T ss_pred cEEEecCCccEEEEcC-CCccccCCEEEEEEcCCCCC
Confidence 9999999999999999 69999999999999876543
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1e-32 Score=195.03 Aligned_cols=82 Identities=43% Similarity=0.961 Sum_probs=68.1
Q ss_pred cccCCCccchhcccCCCeEEeCCEEEEeecC-CCeeEEeCcccCCCCCCCCcc--ccCCceEEEeCCcccEEEEcCCCCC
Q 031614 33 WIVPTSADYYTNWISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSV--VASHPVQIQLNSTGSRYFICTVDDH 109 (156)
Q Consensus 33 W~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~H~V~~V~~~~y~~C~~~~~~--~~~G~~~v~L~~~G~~YFiC~v~~h 109 (156)
|+++++..+|++||++++|++||+|+|+|++ .|+|+||++++|++|+.++++ +++|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 8898866779999999999999999999999 699999999999999999998 8999999999999999999999999
Q ss_pred cCCCC
Q 031614 110 CGRGQ 114 (156)
Q Consensus 110 C~~Gm 114 (156)
|+.||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.61 E-value=4.6e-07 Score=67.19 Aligned_cols=70 Identities=24% Similarity=0.313 Sum_probs=49.8
Q ss_pred CCCeEEeCCEEEEeecC--CCeeEEeCcccCCCCCCCCccccCCc-eEEEeCCcccEEEEcCCCCCcCCCCeEEEEec
Q 031614 47 SNKTFEVGDSVMFNWST--THNVADVSKSEYDDCSKTSSVVASHP-VQIQLNSTGSRYFICTVDDHCGRGQKLAITVK 121 (156)
Q Consensus 47 ~~~tF~vGD~L~F~y~~--~H~V~~V~~~~y~~C~~~~~~~~~G~-~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~ 121 (156)
+..++++||++.|.... .|++.--.. +....++.....|. .+++++++|.|-|+|+ .|=+.|||-.|+|+
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKDLAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccccccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 36899999999998754 599863211 11111111234443 5789999999999998 79889999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.46 E-value=4.3e-07 Score=64.97 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=52.3
Q ss_pred CCeEEeCCEEEEeecC--CCeeEEeCccc--CCCCCCCCc-----cccCCce-EEEeCCcccEEEEcCCCCCcCCCCeEE
Q 031614 48 NKTFEVGDSVMFNWST--THNVADVSKSE--YDDCSKTSS-----VVASHPV-QIQLNSTGSRYFICTVDDHCGRGQKLA 117 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~H~V~~V~~~~--y~~C~~~~~-----~~~~G~~-~v~L~~~G~~YFiC~v~~hC~~GmKl~ 117 (156)
..++++||++.|.... .|++...+... -...+...+ ....|.+ .++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 4789999999999954 69999885220 111211111 1344554 788889999999999 8 999999999
Q ss_pred EEec
Q 031614 118 ITVK 121 (156)
Q Consensus 118 I~V~ 121 (156)
|+|+
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.23 E-value=8e-06 Score=58.48 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCeEEeCCEEEEeecC--CCeeEEeCccc-----CCCCCC--CCccccCCc-eEEEeCCcccEEEEcCCCCCcCCCCeEE
Q 031614 48 NKTFEVGDSVMFNWST--THNVADVSKSE-----YDDCSK--TSSVVASHP-VQIQLNSTGSRYFICTVDDHCGRGQKLA 117 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~H~V~~V~~~~-----y~~C~~--~~~~~~~G~-~~v~L~~~G~~YFiC~v~~hC~~GmKl~ 117 (156)
..++++||++.|..+. .|+++..+... ...... +......|. ..++++.+|.|-|.|+ +|+..||+-.
T Consensus 18 ~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~G~ 95 (99)
T TIGR02656 18 KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMVGK 95 (99)
T ss_pred EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCEEE
Confidence 5789999999999754 59998643210 000111 111134454 3789999999999998 8999999999
Q ss_pred EEec
Q 031614 118 ITVK 121 (156)
Q Consensus 118 I~V~ 121 (156)
|+|.
T Consensus 96 I~V~ 99 (99)
T TIGR02656 96 ITVE 99 (99)
T ss_pred EEEC
Confidence 9884
No 6
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.07 E-value=2.9e-05 Score=57.86 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=51.8
Q ss_pred CCeEEeCCEEEEeecC-CCeeEEeCcccCCCCCCCCcc-ccCCc-eEEEeCCcccEEEEcCCCCCcCCCCeEEEEecC
Q 031614 48 NKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSV-VASHP-VQIQLNSTGSRYFICTVDDHCGRGQKLAITVKN 122 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~-~H~V~~V~~~~y~~C~~~~~~-~~~G~-~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~~ 122 (156)
..++++||+|.|.+.. .|+|........+ ..+.. ...|. -+++++++|.|-|.|. .|=..||+-.|+|..
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 5789999999999987 7999864221110 01111 11233 4789999999999998 799999999999987
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.00 E-value=3.6e-05 Score=58.47 Aligned_cols=68 Identities=25% Similarity=0.355 Sum_probs=51.5
Q ss_pred CCeEEeCCEEEEeecC--CCeeEEeCcccCCCCCCCC-ccccCC--c-eEEEeCCcccEEEEcCCCCCcCCCCeEEEEec
Q 031614 48 NKTFEVGDSVMFNWST--THNVADVSKSEYDDCSKTS-SVVASH--P-VQIQLNSTGSRYFICTVDDHCGRGQKLAITVK 121 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~H~V~~V~~~~y~~C~~~~-~~~~~G--~-~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~ 121 (156)
..+..+||++.|.+.. .|||.-.... ++.. ..+..+ . .+.+++++|.|.|+|.- |=..|||-.|.|.
T Consensus 55 ~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 55 EVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DPEGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCC-----CcccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence 5899999999999987 5999877444 1111 112222 3 37899999999999984 8889999999986
Q ss_pred C
Q 031614 122 N 122 (156)
Q Consensus 122 ~ 122 (156)
+
T Consensus 128 ~ 128 (128)
T COG3794 128 E 128 (128)
T ss_pred C
Confidence 3
No 8
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.93 E-value=6.2e-05 Score=56.06 Aligned_cols=68 Identities=22% Similarity=0.440 Sum_probs=50.7
Q ss_pred CCeEEeCCEEEEeecC---CCeeEEeCcccCCCCCCCCcc-ccCC-ceEEEeCCcccEEEEcCCCCCcCCCCeEEEEec
Q 031614 48 NKTFEVGDSVMFNWST---THNVADVSKSEYDDCSKTSSV-VASH-PVQIQLNSTGSRYFICTVDDHCGRGQKLAITVK 121 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~---~H~V~~V~~~~y~~C~~~~~~-~~~G-~~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~ 121 (156)
..++++||++.|+++. .|+|.--+...|+. ... ...| .-.++++++|.|-|+|. -|=..|||-.|+|.
T Consensus 43 ~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTYEHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEEEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 4799999999999864 59997533333441 122 3444 35899999999999998 58777999999984
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.44 E-value=0.00096 Score=46.18 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=47.7
Q ss_pred CCeEEeCCEEEEeecC--CCeeEEeCcccCCCCCCCCccccCCc-eEEEeCCcccEEEEcCCCCCcCCCCeEEEEec
Q 031614 48 NKTFEVGDSVMFNWST--THNVADVSKSEYDDCSKTSSVVASHP-VQIQLNSTGSRYFICTVDDHCGRGQKLAITVK 121 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~H~V~~V~~~~y~~C~~~~~~~~~G~-~~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~ 121 (156)
..++++||+|.|+... .|+|...+..+ ..=+...+....|. .++++++||+|-|.|.... +||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-ccccccccccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4789999999999876 59998653221 11011112234444 4789999999999999854 599998874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.08 E-value=0.0026 Score=49.12 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=48.7
Q ss_pred CeEEeCCEEEEeecC-----CCeeEEeCcc-cCC------------CCCCCCccccCC-----ceEEEeCCcccEEEEcC
Q 031614 49 KTFEVGDSVMFNWST-----THNVADVSKS-EYD------------DCSKTSSVVASH-----PVQIQLNSTGSRYFICT 105 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~-----~H~V~~V~~~-~y~------------~C~~~~~~~~~G-----~~~v~L~~~G~~YFiC~ 105 (156)
.+++.||++.|...+ .|.....+.. .+. .|....+ ..+| +-+++++++|+|||.|.
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~-~~~g~~~~~~~tf~f~~aGtywyhC~ 132 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP-PKSGKFGYTDFTYHFSTAGTYWYLCT 132 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC-CCCCccceeEEEEECCCCeEEEEEcC
Confidence 557899999999865 2777665321 111 0111110 1122 34778889999999999
Q ss_pred CCCCcCCCCeEEEEec
Q 031614 106 VDDHCGRGQKLAITVK 121 (156)
Q Consensus 106 v~~hC~~GmKl~I~V~ 121 (156)
.++|=+.||+-.|.|.
T Consensus 133 ~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 133 YPGHAENGMYGKIVVK 148 (148)
T ss_pred ChhHHHCCCEEEEEEC
Confidence 9999999999888873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.83 E-value=0.0065 Score=49.26 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=49.6
Q ss_pred EEeCCEEEEeecC----CCeeEEe-CcccCCCCCC---CCcc-----c----------cCCceE-EEe-C-CcccEEEEc
Q 031614 51 FEVGDSVMFNWST----THNVADV-SKSEYDDCSK---TSSV-----V----------ASHPVQ-IQL-N-STGSRYFIC 104 (156)
Q Consensus 51 F~vGD~L~F~y~~----~H~V~~V-~~~~y~~C~~---~~~~-----~----------~~G~~~-v~L-~-~~G~~YFiC 104 (156)
.-.|-++.|++.+ .|++..| +......+-. ++.+ . ..|... ..+ + ++|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 3478899999865 3999988 4444444421 1221 1 123322 122 2 699999999
Q ss_pred CCCCCcCCCCeEEEEecCC
Q 031614 105 TVDDHCGRGQKLAITVKNS 123 (156)
Q Consensus 105 ~v~~hC~~GmKl~I~V~~~ 123 (156)
+.+||=+.||-..+.|.+.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred cCCChhhcCCEEEEEEecC
Confidence 9999999999999999875
No 12
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.52 E-value=0.0034 Score=44.86 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=33.3
Q ss_pred cCcccCCCccchhcccCCCeEEeCCEEEEeecC----CCeeEEeCcccCCCCCCCCcc-ccCCce-EEEe--CCcccEEE
Q 031614 31 LHWIVPTSADYYTNWISNKTFEVGDSVMFNWST----THNVADVSKSEYDDCSKTSSV-VASHPV-QIQL--NSTGSRYF 102 (156)
Q Consensus 31 ~gW~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~----~H~V~~V~~~~y~~C~~~~~~-~~~G~~-~v~L--~~~G~~YF 102 (156)
..+.+.|+ ..+++.|+.+.+.+.+ .|++..-+ ..-.. ...|.. ++++ .++|.|=|
T Consensus 28 ~~~~f~P~---------~i~v~~G~~v~l~~~N~~~~~h~~~i~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 28 TDFGFSPS---------TITVKAGQPVTLTFTNNDSRPHEFVIPD--------LGISKVLPPGETATVTFTPLKPGEYEF 90 (104)
T ss_dssp --EEEES----------EEEEETTCEEEEEEEE-SSS-EEEEEGG--------GTEEEEE-TT-EEEEEEEE-S-EEEEE
T ss_pred cCCeEecC---------EEEEcCCCeEEEEEEECCCCcEEEEECC--------CceEEEECCCCEEEEEEcCCCCEEEEE
Confidence 55666665 5899999955555543 37775322 11111 444443 4554 89999999
Q ss_pred EcCCCCCcCCCCeEEEEe
Q 031614 103 ICTVDDHCGRGQKLAITV 120 (156)
Q Consensus 103 iC~v~~hC~~GmKl~I~V 120 (156)
.|+.+.+ ||-.|+|
T Consensus 91 ~C~~~~~----m~G~liV 104 (104)
T PF13473_consen 91 YCTMHPN----MKGTLIV 104 (104)
T ss_dssp B-SSS-T----TB-----
T ss_pred EcCCCCc----ceecccC
Confidence 9998664 5544443
No 13
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.84 E-value=0.056 Score=43.63 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=46.6
Q ss_pred EeCCEEEEeecC----CCeeEEe-CcccCCC-CCCC-Cc-----------c-c----cCCce---EEEeCCcccEEEEcC
Q 031614 52 EVGDSVMFNWST----THNVADV-SKSEYDD-CSKT-SS-----------V-V----ASHPV---QIQLNSTGSRYFICT 105 (156)
Q Consensus 52 ~vGD~L~F~y~~----~H~V~~V-~~~~y~~-C~~~-~~-----------~-~----~~G~~---~v~L~~~G~~YFiC~ 105 (156)
-.|=++.+++.+ .|+...| +...+.. -+.. +. . + ++|.. .++-.+||.||++|+
T Consensus 90 PaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~YwlvCg 169 (195)
T TIGR03094 90 PAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKYWLVCG 169 (195)
T ss_pred eCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeEEEEcc
Confidence 467778877755 3999887 4333221 1111 00 1 1 23433 233337999999999
Q ss_pred CCCCcCCCCeEEEEecCC
Q 031614 106 VDDHCGRGQKLAITVKNS 123 (156)
Q Consensus 106 v~~hC~~GmKl~I~V~~~ 123 (156)
.+||-+.||=..+.|.+.
T Consensus 170 ipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 170 ITGHAESGMWAVVIVSSN 187 (195)
T ss_pred cCChhhcCcEEEEEEecC
Confidence 999999999988888765
No 14
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.29 E-value=0.013 Score=45.29 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=52.9
Q ss_pred hhhccCcccCCCccchhcccCCCeEEeCCEEEEeecC-C-----------CeeEEeCcccCCCCCCC-Ccc--c------
Q 031614 27 AEYKLHWIVPTSADYYTNWISNKTFEVGDSVMFNWST-T-----------HNVADVSKSEYDDCSKT-SSV--V------ 85 (156)
Q Consensus 27 ~~~~~gW~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~-----------H~V~~V~~~~y~~C~~~-~~~--~------ 85 (156)
..|..-|+.. |+.+.. =-....+++||.|-+-=+. . ..+++|++++|+.|+.. .+. +
T Consensus 4 ~~~~i~Wns~-N~~F~~-~~~~i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~ 81 (145)
T PF00812_consen 4 DRHPIYWNSS-NPRFRR-KDYVIEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPE 81 (145)
T ss_dssp CEEEEESSTT--TTSTT-SBEEEEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTT
T ss_pred ccceEEeCCC-CCCCcC-CCcEEEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCC
Confidence 3344678864 322211 0112567899999996543 1 45788999999999963 332 1
Q ss_pred -cCCceEEEeC-------------Ccc-cEEEEcCCC-----------CCcCC-CCeEEEEec
Q 031614 86 -ASHPVQIQLN-------------STG-SRYFICTVD-----------DHCGR-GQKLAITVK 121 (156)
Q Consensus 86 -~~G~~~v~L~-------------~~G-~~YFiC~v~-----------~hC~~-GmKl~I~V~ 121 (156)
..|..++++. +|| .||||++-. |-|.. .|||.+.|.
T Consensus 82 ~~~~~~kft~kFq~fSP~p~G~EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 82 APHGPKKFTIKFQEFSPFPLGLEFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp STTSSEEEEEESSSS-SSTTSSS--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred CCCCCcEEEEEEEECCCCCCCeeecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 2345555442 367 677886532 23744 689998874
No 15
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.69 E-value=0.12 Score=43.03 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=56.3
Q ss_pred hhhhhhh-hhccCcccCCCccchhcccCCCeEEeCCEEEEeecC----C------CeeEEeCcccCCCCCC-CCcc--c-
Q 031614 21 AASAAAA-EYKLHWIVPTSADYYTNWISNKTFEVGDSVMFNWST----T------HNVADVSKSEYDDCSK-TSSV--V- 85 (156)
Q Consensus 21 ~~~a~A~-~~~~gW~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~----~------H~V~~V~~~~y~~C~~-~~~~--~- 85 (156)
.+.+++. .|..-|+...+. +..=--..-.++||.|-+-=+. . .-++.|++++|+.|+. +.+. +
T Consensus 18 ~~~~~~~~~~~VyWNSSNp~--F~~~d~vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~ 95 (233)
T KOG3858|consen 18 LGLAAGKNLHPVYWNSSNPR--FRRGDYVIYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWE 95 (233)
T ss_pred cccCccccccceEecCCCcc--eecCCceEEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEE
Confidence 3444444 466888875421 1110012567789999885432 1 2357889999999996 3332 1
Q ss_pred --c-CCceE--------------EEeCCcc-cEEEEcCC-----------CCCcCC-CCeEEEEecCC
Q 031614 86 --A-SHPVQ--------------IQLNSTG-SRYFICTV-----------DDHCGR-GQKLAITVKNS 123 (156)
Q Consensus 86 --~-~G~~~--------------v~L~~~G-~~YFiC~v-----------~~hC~~-GmKl~I~V~~~ 123 (156)
. +.+.. +.+ +|| .||||++- ++-|.. .||+.+.|..+
T Consensus 96 C~rP~~~~kfsikFq~ftP~p~G~EF-~pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~ 162 (233)
T KOG3858|consen 96 CNRPSTPLKFSIKFQRFTPFPLGFEF-QPGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQS 162 (233)
T ss_pred ecCCCcchhhhhhheecCCCCCCccc-cCCCeEEEEeCCCccccccchhhCCEeccCCceEEEEeccc
Confidence 1 11111 111 367 67777653 345644 59998888754
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.092 Score=41.28 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCeEEeCCEEEEeecC-C---CeeEEeCcccC-----CC--------CCCCCcc-cc---CCceEEEeCCcccEEEEcC
Q 031614 47 SNKTFEVGDSVMFNWST-T---HNVADVSKSEY-----DD--------CSKTSSV-VA---SHPVQIQLNSTGSRYFICT 105 (156)
Q Consensus 47 ~~~tF~vGD~L~F~y~~-~---H~V~~V~~~~y-----~~--------C~~~~~~-~~---~G~~~v~L~~~G~~YFiC~ 105 (156)
++.+++.|.+++|.-.+ . |+...- +.+. .. =+..+.+ .. +|.-++.+.++|.|=|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 35788999999998766 2 666432 1111 00 0111112 33 3444788999999999999
Q ss_pred CCCCcCCCCeEEEEecC
Q 031614 106 VDDHCGRGQKLAITVKN 122 (156)
Q Consensus 106 v~~hC~~GmKl~I~V~~ 122 (156)
+|+|=+.||.-.|+|.+
T Consensus 142 iPGHy~AGM~g~itV~p 158 (158)
T COG4454 142 IPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCCcccCCcEEEEEeCC
Confidence 99999999999999863
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.25 E-value=0.17 Score=36.46 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=13.5
Q ss_pred CCccCchhHHHHHHHHHHHH-hhhhhhhhh
Q 031614 1 MACRGLMPSVCCFMFGLAFL-AASAAAAEY 29 (156)
Q Consensus 1 MA~~~~~~~~~~~~~a~~~l-~~~a~A~~~ 29 (156)
||||..+++ + +++|++|| ++.++|++-
T Consensus 1 MaSK~~llL-~-l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLL-G-LLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHH-H-HHHHHHHHHHhhhhhHHh
Confidence 998875544 2 34444344 334444443
No 18
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.20 E-value=0.93 Score=34.42 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=23.5
Q ss_pred cCCc-eEEEeC----Cccc-EEEEcCCCCCcCCCCeEEEE
Q 031614 86 ASHP-VQIQLN----STGS-RYFICTVDDHCGRGQKLAIT 119 (156)
Q Consensus 86 ~~G~-~~v~L~----~~G~-~YFiC~v~~hC~~GmKl~I~ 119 (156)
..|. ++++++ ++|. |=|+|+.|||=. .||-.++
T Consensus 86 ggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 86 GGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 4454 356665 4675 779999999986 6887654
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.68 E-value=0.55 Score=36.05 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=36.4
Q ss_pred cCCCeEEeCCEEEEeecC----CCeeEEeCcccCCCCCCCCccccCCce---EEEeCCcccEEEEcCCCCCc
Q 031614 46 ISNKTFEVGDSVMFNWST----THNVADVSKSEYDDCSKTSSVVASHPV---QIQLNSTGSRYFICTVDDHC 110 (156)
Q Consensus 46 a~~~tF~vGD~L~F~y~~----~H~V~~V~~~~y~~C~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~hC 110 (156)
.+..+++.||.+.+++.+ .|++..- ++. .+ .....|.. +++.++||.|.|.|+. ||
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~---~~g---is-~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSID---AYG---IS-EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEEC---CCC---cc-eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 345778999999888765 2665532 221 11 11344544 5777999999999986 55
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.04 E-value=1.3 Score=41.75 Aligned_cols=65 Identities=25% Similarity=0.370 Sum_probs=43.2
Q ss_pred CCeEEeCCEEEEeecC-------CCeeEEeCcccCCCCCCCCcc-ccCCc---eEEEeCCcccEEEEcCCCCCcC---CC
Q 031614 48 NKTFEVGDSVMFNWST-------THNVADVSKSEYDDCSKTSSV-VASHP---VQIQLNSTGSRYFICTVDDHCG---RG 113 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~-------~H~V~~V~~~~y~~C~~~~~~-~~~G~---~~v~L~~~G~~YFiC~v~~hC~---~G 113 (156)
..+++.||.+.|...+ .|+...- .| +-.. ...|. ..|+.++||.|++.|+. .|- .+
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~-----nI~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~ 625 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NY-----GVNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHME 625 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec---cc-----CccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCccc
Confidence 4789999999999976 1444321 11 1011 23333 36778999999999997 343 36
Q ss_pred CeEEEEecC
Q 031614 114 QKLAITVKN 122 (156)
Q Consensus 114 mKl~I~V~~ 122 (156)
|+-.|.|++
T Consensus 626 M~G~~iVep 634 (635)
T PRK02888 626 MRGRMLVEP 634 (635)
T ss_pred ceEEEEEEe
Confidence 998888875
No 21
>PLN02604 oxidoreductase
Probab=88.47 E-value=2.8 Score=38.76 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCeEEeCCEEEEeecCC----------CeeEEeCcccCCCCC-CCCccccCCce---EEEeCCcccEEEEcCCCCCcCCC
Q 031614 48 NKTFEVGDSVMFNWSTT----------HNVADVSKSEYDDCS-KTSSVVASHPV---QIQLNSTGSRYFICTVDDHCGRG 113 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~~----------H~V~~V~~~~y~~C~-~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~hC~~G 113 (156)
..+++.||+++++..+. |.+.+.....+|.=. .+......|.+ .|+.+++|++||=|-...|-..|
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 135 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAG 135 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCC
Confidence 47789999999987541 233221111011100 00000334443 67888999999999999999999
Q ss_pred CeEEEEecCC
Q 031614 114 QKLAITVKNS 123 (156)
Q Consensus 114 mKl~I~V~~~ 123 (156)
|.-.|.|.+.
T Consensus 136 l~G~liV~~~ 145 (566)
T PLN02604 136 LYGSIRVSLP 145 (566)
T ss_pred CeEEEEEEec
Confidence 9999999864
No 22
>PLN02354 copper ion binding / oxidoreductase
Probab=84.80 E-value=5.4 Score=36.91 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=48.7
Q ss_pred CeEEeCCEEEEeecC--C-------CeeEEeCcccCCCCCCCC-ccccCCce---EEEe-CCcccEEEEcCCCCCcCCCC
Q 031614 49 KTFEVGDSVMFNWST--T-------HNVADVSKSEYDDCSKTS-SVVASHPV---QIQL-NSTGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~--~-------H~V~~V~~~~y~~C~~~~-~~~~~G~~---~v~L-~~~G~~YFiC~v~~hC~~Gm 114 (156)
.+++.||+|+.+..+ . |.+.|-.....|.=-.++ | ...|.+ +|++ +++|++||=+-...+-..|+
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcp-I~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCP-IPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCC-CCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 678899999988754 1 666654222222200000 2 233333 5776 47999999998888888999
Q ss_pred eEEEEecCC
Q 031614 115 KLAITVKNS 123 (156)
Q Consensus 115 Kl~I~V~~~ 123 (156)
.-.+.|.++
T Consensus 139 ~G~lII~~~ 147 (552)
T PLN02354 139 FGGLRVNSR 147 (552)
T ss_pred cceEEEcCC
Confidence 999999764
No 23
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.30 E-value=2.7 Score=33.53 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred CCeEEeCCEEEEeecC---CCeeEEeCcccCCCCCCCCcc-ccCCc---eEEEeCCcccEEEEcCCCCCcC---CCCeEE
Q 031614 48 NKTFEVGDSVMFNWST---THNVADVSKSEYDDCSKTSSV-VASHP---VQIQLNSTGSRYFICTVDDHCG---RGQKLA 117 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~---~H~V~~V~~~~y~~C~~~~~~-~~~G~---~~v~L~~~G~~YFiC~v~~hC~---~GmKl~ 117 (156)
...+.+|+.++|+-++ .|+-..-+... .. .-.|. ..++.+++|.|+..|+. .|- ..|++.
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~ip~~~~--------k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~ 187 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWVPELGG--------KIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLFK 187 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhcccccccCc--------eEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeEE
Confidence 3568899999998876 26665422111 11 22333 25788999999999997 454 459999
Q ss_pred EEecCC
Q 031614 118 ITVKNS 123 (156)
Q Consensus 118 I~V~~~ 123 (156)
|.|.+.
T Consensus 188 v~v~~~ 193 (201)
T TIGR02866 188 VVVVER 193 (201)
T ss_pred EEEECH
Confidence 998763
No 24
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=80.55 E-value=3.1 Score=30.75 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCCeEEeCCEEEEeecC---CCeeEEeCcccCCCCCCCCcc-ccCCc---eEEEeCCcccEEEEcCCCCCcCCC---CeE
Q 031614 47 SNKTFEVGDSVMFNWST---THNVADVSKSEYDDCSKTSSV-VASHP---VQIQLNSTGSRYFICTVDDHCGRG---QKL 116 (156)
Q Consensus 47 ~~~tF~vGD~L~F~y~~---~H~V~~V~~~~y~~C~~~~~~-~~~G~---~~v~L~~~G~~YFiC~v~~hC~~G---mKl 116 (156)
+...+..|+.+.|+-.+ -|+...- +..- .. .-.|. ..++.++||.|++.|+. .|-.| |+.
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip-~~~~-------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~ 115 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIP-ELGI-------KMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPG 115 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEET-TCTE-------EEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EE
T ss_pred ceecccccceEeEEEEcCCcccccccc-ccCc-------ccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeE
Confidence 34667899999999987 3888642 1110 01 23344 36788999999999985 78776 888
Q ss_pred EEEe
Q 031614 117 AITV 120 (156)
Q Consensus 117 ~I~V 120 (156)
.|.|
T Consensus 116 ~v~V 119 (120)
T PF00116_consen 116 KVIV 119 (120)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 25
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=80.46 E-value=6.8 Score=33.46 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=47.5
Q ss_pred CeEEeCCEEEEeecCC------CeeEEeCcccCCCCCCCCcc--ccCCce---EEEeCCcccEEEEcCC----CCCcCCC
Q 031614 49 KTFEVGDSVMFNWSTT------HNVADVSKSEYDDCSKTSSV--VASHPV---QIQLNSTGSRYFICTV----DDHCGRG 113 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~------H~V~~V~~~~y~~C~~~~~~--~~~G~~---~v~L~~~G~~YFiC~v----~~hC~~G 113 (156)
.+++.||+++.++.+. |++..=-.... +..... ...|.+ .|+++.+|++||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 6788999999877552 55533111000 000111 344443 6788899999999995 3477889
Q ss_pred CeEEEEecCCC
Q 031614 114 QKLAITVKNSG 124 (156)
Q Consensus 114 mKl~I~V~~~~ 124 (156)
|.-.+.|.+..
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998754
No 26
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=79.55 E-value=6.4 Score=32.95 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=46.7
Q ss_pred CeEEeCCEEEEeecC---CCeeEEeCcccCCCCCCCCcc-ccCC---ceEEEeCCcccEEEEcCCCCCcCCC---CeEEE
Q 031614 49 KTFEVGDSVMFNWST---THNVADVSKSEYDDCSKTSSV-VASH---PVQIQLNSTGSRYFICTVDDHCGRG---QKLAI 118 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~---~H~V~~V~~~~y~~C~~~~~~-~~~G---~~~v~L~~~G~~YFiC~v~~hC~~G---mKl~I 118 (156)
..+.+|..+.|+-++ .|+...-+-. ... .-.| ...++.+++|.|+.+|.. .|-.| |++.|
T Consensus 139 l~lPv~~~V~f~ltS~DViHsF~IP~l~--------~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v 208 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVIHSFWIPQLG--------GKIDAIPGMTTELWLTANKPGTYRGICAE--YCGPGHSFMRFKV 208 (247)
T ss_pred EEEeCCCeEEEEEEechhceeEEecCCC--------ceeeecCCceEEEEEecCCCeEEEEEcHh--hcCCCcccceEEE
Confidence 778899999999987 2777643211 111 1122 236788999999999985 67655 99999
Q ss_pred EecCCC
Q 031614 119 TVKNSG 124 (156)
Q Consensus 119 ~V~~~~ 124 (156)
.|.+..
T Consensus 209 ~vvs~~ 214 (247)
T COG1622 209 IVVSQE 214 (247)
T ss_pred EEEcHH
Confidence 998764
No 27
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=76.43 E-value=1.7 Score=25.85 Aligned_cols=18 Identities=33% Similarity=0.846 Sum_probs=11.2
Q ss_pred hhcccCCCeEEeCCEEEE
Q 031614 42 YTNWISNKTFEVGDSVMF 59 (156)
Q Consensus 42 Y~~Wa~~~tF~vGD~L~F 59 (156)
|.+|..+++...||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 568999999999999997
No 28
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=74.68 E-value=4.1 Score=29.86 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCeEEeCCEEEEeecC--C--CeeEE----eCcc-cCCC-CC-CCCccccCCce---EEEeCC-cccEEEEcCCCCCcCC
Q 031614 48 NKTFEVGDSVMFNWST--T--HNVAD----VSKS-EYDD-CS-KTSSVVASHPV---QIQLNS-TGSRYFICTVDDHCGR 112 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~--H~V~~----V~~~-~y~~-C~-~~~~~~~~G~~---~v~L~~-~G~~YFiC~v~~hC~~ 112 (156)
..+++.||+|..++.+ . +++.- ++.. ..|. .. ...+ ...|.. .+++++ +|++||-|...+|=.+
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~-i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCP-IAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSS-BSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCccccccee-EEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 3678999999999975 2 44422 1111 0111 00 1111 333443 678888 9999999999885448
Q ss_pred CCeEEEEecCC
Q 031614 113 GQKLAITVKNS 123 (156)
Q Consensus 113 GmKl~I~V~~~ 123 (156)
||--.+.|.++
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99988888764
No 29
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=69.69 E-value=26 Score=32.91 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=48.8
Q ss_pred CeEEeCCEEEEeecC--C-------CeeEEeCcccCC-----CCCCCCccccCCce---EEEe-CCcccEEEEcCCCCCc
Q 031614 49 KTFEVGDSVMFNWST--T-------HNVADVSKSEYD-----DCSKTSSVVASHPV---QIQL-NSTGSRYFICTVDDHC 110 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~--~-------H~V~~V~~~~y~-----~C~~~~~~~~~G~~---~v~L-~~~G~~YFiC~v~~hC 110 (156)
.+++.||+++.+..+ . |.+.|-.....| .| | ...|.+ +|++ +++|++||=+....+-
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----P-I~PG~sftY~F~~~dq~GT~WYHsH~~~Q~ 136 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----A-IPAGWNWTYQFQVKDQVGSFFYAPSTALHR 136 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----C-cCCCCcEEEEEEeCCCCceeEeeccchhhh
Confidence 568899999998754 1 676654221122 23 2 233332 6777 4899999999988888
Q ss_pred CCCCeEEEEecCC
Q 031614 111 GRGQKLAITVKNS 123 (156)
Q Consensus 111 ~~GmKl~I~V~~~ 123 (156)
..|+.-.|.|.+.
T Consensus 137 ~~Gl~GalII~~~ 149 (596)
T PLN00044 137 AAGGYGAITINNR 149 (596)
T ss_pred hCcCeeEEEEcCc
Confidence 8999999999864
No 30
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.52 E-value=7.6 Score=31.26 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred CeEEeCCEEEEeecCC---CeeEEeCcccCCCCCCCCcc-ccCCc---eEEEeCCcccEEEEcCCCCCcCCC---CeEEE
Q 031614 49 KTFEVGDSVMFNWSTT---HNVADVSKSEYDDCSKTSSV-VASHP---VQIQLNSTGSRYFICTVDDHCGRG---QKLAI 118 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~---H~V~~V~~~~y~~C~~~~~~-~~~G~---~~v~L~~~G~~YFiC~v~~hC~~G---mKl~I 118 (156)
....+|..+.|+-++. |+-..-+.. ... .-.|. ..++.+++|.++..|+. .|-.| |++.|
T Consensus 118 l~lp~g~~v~~~ltS~DViHsf~vp~l~--------~k~d~~PG~~~~~~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v 187 (194)
T MTH00047 118 LRLVYGVPYHLLVTSSDVIHSFSVPDLN--------LKMDAIPGRINHLFFCPDRHGVFVGYCSE--LCGVGHSYMPIVI 187 (194)
T ss_pred EEEeCCCEEEeeeecCccccceeccccC--------ceeecCCCceEEEEEEcCCCEEEEEEeeh--hhCcCcccCcEEE
Confidence 3345677777777662 665431111 001 12233 25677899999999984 77665 99999
Q ss_pred EecCC
Q 031614 119 TVKNS 123 (156)
Q Consensus 119 ~V~~~ 123 (156)
.|.++
T Consensus 188 ~v~~~ 192 (194)
T MTH00047 188 EVVDV 192 (194)
T ss_pred EEEcC
Confidence 99875
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=62.50 E-value=24 Score=32.35 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCeEEeCCEEEEeecCC----------CeeEEeCcccCCC-CCCCCccccCCce---EEEeCCcccEEEEcCCCCCcCCC
Q 031614 48 NKTFEVGDSVMFNWSTT----------HNVADVSKSEYDD-CSKTSSVVASHPV---QIQLNSTGSRYFICTVDDHCGRG 113 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~~----------H~V~~V~~~~y~~-C~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~hC~~G 113 (156)
..+++.||.++++..+. |.+.+......|. -..+......|.+ .|+++.+|++||-|-...|-..|
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 112 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAG 112 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhcc
Confidence 47789999999977541 3332211110111 0000000233443 67889999999999998999999
Q ss_pred CeEEEEecCC
Q 031614 114 QKLAITVKNS 123 (156)
Q Consensus 114 mKl~I~V~~~ 123 (156)
|.-.+.|.++
T Consensus 113 l~G~liV~~~ 122 (541)
T TIGR03388 113 LYGSLIVDVP 122 (541)
T ss_pred ceEEEEEecC
Confidence 9999999865
No 32
>PLN02191 L-ascorbate oxidase
Probab=62.24 E-value=28 Score=32.36 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=47.5
Q ss_pred CeEEeCCEEEEeecCC----------CeeEEeCcccCCC-CCCCCccccCCce---EEEeCCcccEEEEcCCCCCcCCCC
Q 031614 49 KTFEVGDSVMFNWSTT----------HNVADVSKSEYDD-CSKTSSVVASHPV---QIQLNSTGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~----------H~V~~V~~~~y~~-C~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~hC~~Gm 114 (156)
.+++.||+|+.+..+. |.+.+-+....|. -..+..-...|.+ .|+++++|++||=|-...+-..||
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl 135 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGL 135 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCC
Confidence 6788999999877541 3443321111111 0000000233443 678899999999999988889999
Q ss_pred eEEEEecCC
Q 031614 115 KLAITVKNS 123 (156)
Q Consensus 115 Kl~I~V~~~ 123 (156)
.-.+.|.+.
T Consensus 136 ~G~liV~~~ 144 (574)
T PLN02191 136 YGSLIVDVA 144 (574)
T ss_pred EEEEEEccC
Confidence 999999753
No 33
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=51.34 E-value=47 Score=25.41 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=26.0
Q ss_pred EEEeCCcccEEEEcCCCCCcCCCCeEEEEecCCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRGQKLAITVKNSG 124 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~~~~ 124 (156)
++++.. |..|-|.+ ..|..||++...+.+.+
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g 130 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAG 130 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecC
Confidence 577775 99999986 79999999999988764
No 34
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=50.58 E-value=23 Score=27.96 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.2
Q ss_pred CCeEEeCCEEEEeecC
Q 031614 48 NKTFEVGDSVMFNWST 63 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~ 63 (156)
..+.+.||.++|+-+.
T Consensus 48 ~~~~~rGDiVvf~~P~ 63 (176)
T PRK13838 48 DRPVAVGDLVFICPPE 63 (176)
T ss_pred CCCCCCCcEEEEECCc
Confidence 4789999999998654
No 35
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.33 E-value=24 Score=28.82 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=25.2
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.++||.++..|+. -|-.| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5678899999999985 77665 9999888763
No 36
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=48.89 E-value=9.4 Score=28.17 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=17.6
Q ss_pred CeEEeCCEEEEeecC-CC-eeEEe-CcccCCC
Q 031614 49 KTFEVGDSVMFNWST-TH-NVADV-SKSEYDD 77 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~-~H-~V~~V-~~~~y~~ 77 (156)
+.|++||.|+|+=-. +. =+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 589999999996533 22 22344 4455543
No 37
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=48.46 E-value=33 Score=32.09 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=43.8
Q ss_pred ccCCCeEEeCCEEEEeecC-CCeeEEeCcccCCCCCCCC----cc---ccCCce-EEEeCCcccEEEEc
Q 031614 45 WISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTS----SV---VASHPV-QIQLNSTGSRYFIC 104 (156)
Q Consensus 45 Wa~~~tF~vGD~L~F~y~~-~H~V~~V~~~~y~~C~~~~----~~---~~~G~~-~v~L~~~G~~YFiC 104 (156)
=.++++|..-|.+.|+|+. +..++.+...+.|.-+.+- .+ ..+|++ +|+|++.|+-|=++
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 3457999999999999998 6777777777777655443 12 244665 78999999877554
No 38
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=45.22 E-value=13 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.1
Q ss_pred CCeEEeCCEEEEe
Q 031614 48 NKTFEVGDSVMFN 60 (156)
Q Consensus 48 ~~tF~vGD~L~F~ 60 (156)
.+.|+|||.|.++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5789999999874
No 39
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.81 E-value=32 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.2
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.+++|.+|..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5778899999999985 66555 888888765
No 40
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=43.37 E-value=35 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=23.2
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999985 66543 888888765
No 41
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=42.77 E-value=96 Score=29.10 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=52.1
Q ss_pred cccCCCccchhcccCCCeEEeCCEEEEeecC-C---Cee------EEe-Ccc-cCCCCCCCCcc-ccCCce---EEEeCC
Q 031614 33 WIVPTSADYYTNWISNKTFEVGDSVMFNWST-T---HNV------ADV-SKS-EYDDCSKTSSV-VASHPV---QIQLNS 96 (156)
Q Consensus 33 W~~~~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~---H~V------~~V-~~~-~y~~C~~~~~~-~~~G~~---~v~L~~ 96 (156)
|+++-. .|.. ....+++.||.+++.+.+ . |.+ .++ +.. .+.. ..+.. ...|.+ .|..++
T Consensus 488 wtiNG~--~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 488 WSFDGE--AFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTADA 562 (587)
T ss_pred EEECCc--cCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEECCC
Confidence 777542 1332 235789999999999976 2 433 233 211 1110 01112 333433 578889
Q ss_pred cccEEEEcCCCCCcCCCCeEEEEe
Q 031614 97 TGSRYFICTVDDHCGRGQKLAITV 120 (156)
Q Consensus 97 ~G~~YFiC~v~~hC~~GmKl~I~V 120 (156)
||..+|=|-...|=+.||--.+.|
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999877766
No 42
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.59 E-value=36 Score=27.83 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.3
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5678899999999985 67665 888888775
No 43
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.88 E-value=38 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=24.4
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.++||.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 5678899999999985 77655 898888875
No 44
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.87 E-value=36 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.+..++||.+|..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4677899999999986 66544 888888775
No 45
>PLN02835 oxidoreductase
Probab=40.67 E-value=1.2e+02 Score=28.03 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=47.7
Q ss_pred CeEEeCCEEEEeecCC---------CeeEEeCcccCCCCCCCC-ccccCCce---EEEe-CCcccEEEEcCCCCCcCCCC
Q 031614 49 KTFEVGDSVMFNWSTT---------HNVADVSKSEYDDCSKTS-SVVASHPV---QIQL-NSTGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~---------H~V~~V~~~~y~~C~~~~-~~~~~G~~---~v~L-~~~G~~YFiC~v~~hC~~Gm 114 (156)
.+++.||+|+.+..++ |.+.+-.....|.=-.++ | ...|.+ .|++ +++|++||=|-...+-..|+
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~p-I~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCP-IPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCC-CCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 6789999999888551 666654322222200011 2 233332 5665 57999999998888888899
Q ss_pred eEEEEecC
Q 031614 115 KLAITVKN 122 (156)
Q Consensus 115 Kl~I~V~~ 122 (156)
.-.+.|.+
T Consensus 141 ~G~lIV~~ 148 (539)
T PLN02835 141 FGAINVYE 148 (539)
T ss_pred cceeEEeC
Confidence 98888864
No 46
>PRK11528 hypothetical protein; Provisional
Probab=40.64 E-value=61 Score=27.17 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=26.0
Q ss_pred hhhhccCcc-cCCCccchhcccCCCeEEeC--------CEEEEeecCCCeeEE
Q 031614 26 AAEYKLHWI-VPTSADYYTNWISNKTFEVG--------DSVMFNWSTTHNVAD 69 (156)
Q Consensus 26 A~~~~~gW~-~~~~~~~Y~~Wa~~~tF~vG--------D~L~F~y~~~H~V~~ 69 (156)
+.++..+|. +..+ |-+|.+..+.+.+ +.|+|++-.+++...
T Consensus 21 ~Ad~~~~w~dis~~---yl~W~~~~e~~~~~~~~~~d~~ylelE~g~~~~wGD 70 (254)
T PRK11528 21 QAEYKGGFANISLN---YLDWTSRTTEKSSDKSHKDDFGYLELEGGAGFSWGE 70 (254)
T ss_pred hhhhhccccceeeh---hhhhhccccccccccCCcCCCcEEEEEccccCCeEe
Confidence 456666665 4445 8888887555432 278888877655543
No 47
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.34 E-value=43 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.2
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.++||.+|-.|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5678899999999985 67554 888888775
No 48
>PLN02168 copper ion binding / pectinesterase
Probab=39.11 E-value=1.2e+02 Score=28.06 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=48.8
Q ss_pred CeEEeCCEEEEeecC--C-------CeeEEeCcccCCC-CCCCCccccCCce---EEEeC-CcccEEEEcCCCCCcCCCC
Q 031614 49 KTFEVGDSVMFNWST--T-------HNVADVSKSEYDD-CSKTSSVVASHPV---QIQLN-STGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~--~-------H~V~~V~~~~y~~-C~~~~~~~~~G~~---~v~L~-~~G~~YFiC~v~~hC~~Gm 114 (156)
.+++.||+|+.+..+ . |.+.+-+....|. -..-.| ...|.+ .|+++ ++|++||=+-...+=..|+
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcp-I~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCP-ILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCC-CCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 678999999999865 1 6665543321222 110012 223332 67874 7999999998777767899
Q ss_pred eEEEEecCCC
Q 031614 115 KLAITVKNSG 124 (156)
Q Consensus 115 Kl~I~V~~~~ 124 (156)
.-.+.|.+..
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997643
No 49
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=38.71 E-value=44 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=23.7
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.++||.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5677899999999985 66554 888888765
No 50
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=38.12 E-value=21 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=14.1
Q ss_pred hhcccCCCeEEeCCEEEE
Q 031614 42 YTNWISNKTFEVGDSVMF 59 (156)
Q Consensus 42 Y~~Wa~~~tF~vGD~L~F 59 (156)
|..|..++....||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888888998876
No 51
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.00 E-value=47 Score=27.21 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=24.2
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5677899999999985 67665 888888765
No 52
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=36.92 E-value=49 Score=27.12 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=41.3
Q ss_pred CCeEEeCCEEEEeecC---CCeeEEeCcccCCCCCCCCccccCCc---eEEEeCCcccEEEEcCCCCCcCCC---CeEEE
Q 031614 48 NKTFEVGDSVMFNWST---THNVADVSKSEYDDCSKTSSVVASHP---VQIQLNSTGSRYFICTVDDHCGRG---QKLAI 118 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~---~H~V~~V~~~~y~~C~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~hC~~G---mKl~I 118 (156)
...+-+|-.++|+-++ -|+-..-....=.. .-.|. ..++.+++|.|+-.|+. -|-.| |++.|
T Consensus 140 el~lP~g~pV~~~ltS~DViHSF~VP~l~~K~D-------aiPG~~n~~~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V 210 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVMNSFFIPQLGSQIY-------AMAGMQTKLHLIANEPGVYDGISAN--YSGPGFSGMKFKA 210 (226)
T ss_pred eEEEECCCEEEEEEEECchhhhhhhhhcCCeee-------cCCCceEEEEEEeCCCEEEEEEchh--hcCcCccCCeEEE
Confidence 3556678888887766 26654321110000 11232 25788999999999984 67654 99998
Q ss_pred EecC
Q 031614 119 TVKN 122 (156)
Q Consensus 119 ~V~~ 122 (156)
.|.+
T Consensus 211 ~v~~ 214 (226)
T TIGR01433 211 IATD 214 (226)
T ss_pred EEEC
Confidence 8875
No 53
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=36.73 E-value=1.8e+02 Score=27.24 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCeEEeCCEEEEeecCC---------CeeEEeCcccCCC-CCCCCccccCCce---EEEeCCcccEEEEcCCCCCcCCCC
Q 031614 48 NKTFEVGDSVMFNWSTT---------HNVADVSKSEYDD-CSKTSSVVASHPV---QIQLNSTGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~~---------H~V~~V~~~~y~~-C~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~hC~~Gm 114 (156)
..+++.||.++.++.+. |.+..-+. .|. ...+......|.+ .|++..+|+|||=|-...+=+.|+
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL 154 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGL 154 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccc
Confidence 36789999999998762 22221111 111 1111111223332 678889999999998777777899
Q ss_pred eEEEEecCC
Q 031614 115 KLAITVKNS 123 (156)
Q Consensus 115 Kl~I~V~~~ 123 (156)
.-.+.|.+.
T Consensus 155 ~G~lIV~~~ 163 (587)
T TIGR01480 155 YGPLIIDPA 163 (587)
T ss_pred eEEEEECCC
Confidence 988888754
No 54
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=36.50 E-value=76 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=17.1
Q ss_pred CCeEEeCCEEEEeecC--C---CeeEEe
Q 031614 48 NKTFEVGDSVMFNWST--T---HNVADV 70 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~--~---H~V~~V 70 (156)
...++.||.++|+.+. . |.|..+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 3578899999998765 2 677666
No 55
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=35.77 E-value=1.2e+02 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEeCCcccEEEEcCCCCCcCCCCeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRGQKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~~ 122 (156)
+++| +||+|-|+|+. | ..|+-.|+|..
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg 117 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKG 117 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeC
Confidence 4566 69999999976 4 33566788865
No 56
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=35.40 E-value=82 Score=17.87 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEeCCcccEEEEcCCCCCcCCCCe
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRGQK 115 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~GmK 115 (156)
...+++.|.-||=.++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4577888999999999999999974
No 57
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.12 E-value=56 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.8
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.++||.++-.|+. -|-.| |.+.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678899999999984 77665 8888887763
No 58
>PLN02792 oxidoreductase
Probab=33.69 E-value=1.7e+02 Score=27.11 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=46.0
Q ss_pred CeEEeCCEEEEeecCC---------CeeEEeCcccCCCC-CCCCccccCCce---EEEe-CCcccEEEEcCCCCCcCCCC
Q 031614 49 KTFEVGDSVMFNWSTT---------HNVADVSKSEYDDC-SKTSSVVASHPV---QIQL-NSTGSRYFICTVDDHCGRGQ 114 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~---------H~V~~V~~~~y~~C-~~~~~~~~~G~~---~v~L-~~~G~~YFiC~v~~hC~~Gm 114 (156)
.+++.||+|+.+..++ |.+.|-.....|.= ...-|+ ..|.+ .|++ +++|++||=+-...+-..|+
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI-~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPI-PPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCcc-CCCCcEEEEEEeCCCccceEEecCcchhhhccc
Confidence 6789999999988651 66665422111210 000122 23332 6777 47999999998877777788
Q ss_pred eEEEEecC
Q 031614 115 KLAITVKN 122 (156)
Q Consensus 115 Kl~I~V~~ 122 (156)
.-.+.|.+
T Consensus 128 ~G~liI~~ 135 (536)
T PLN02792 128 YGSLRIYS 135 (536)
T ss_pred ccceEEeC
Confidence 77776655
No 59
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=33.52 E-value=59 Score=26.68 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=24.3
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.++||.+|..|+. -|-.| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5678899999999985 66554 8888887653
No 60
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=33.40 E-value=59 Score=26.23 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=25.5
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.+++|.|+-.|+. -|-.| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6788899999999985 77665 9999998763
No 61
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=33.13 E-value=28 Score=26.15 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=15.4
Q ss_pred CeEEeCCEEEEeecCCCe
Q 031614 49 KTFEVGDSVMFNWSTTHN 66 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~H~ 66 (156)
++|++||.+.|-++..|+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 679999999999998544
No 62
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=33.12 E-value=1.8e+02 Score=26.69 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred eEEeCCEEEEeecCC---------CeeEEeCcccCCCCCCCCcc-ccCCce---EEEe-CCcccEEEEcCCCCCcCCCCe
Q 031614 50 TFEVGDSVMFNWSTT---------HNVADVSKSEYDDCSKTSSV-VASHPV---QIQL-NSTGSRYFICTVDDHCGRGQK 115 (156)
Q Consensus 50 tF~vGD~L~F~y~~~---------H~V~~V~~~~y~~C~~~~~~-~~~G~~---~v~L-~~~G~~YFiC~v~~hC~~GmK 115 (156)
+++.||+++.+..+. |.+.|......|.=..-..- ...|.+ .|++ +++|++||=|-. .+...||.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccce
Q ss_pred EEEEecCCC
Q 031614 116 LAITVKNSG 124 (156)
Q Consensus 116 l~I~V~~~~ 124 (156)
-.+.|.++.
T Consensus 116 G~lIV~~~~ 124 (539)
T TIGR03389 116 GAIVILPKP 124 (539)
T ss_pred EEEEEcCCC
No 63
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=32.96 E-value=1.1e+02 Score=28.60 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=12.5
Q ss_pred ccc-EEEEcCCCCCcCCCCe
Q 031614 97 TGS-RYFICTVDDHCGRGQK 115 (156)
Q Consensus 97 ~G~-~YFiC~v~~hC~~GmK 115 (156)
+|. .||=|=-++.|+...+
T Consensus 111 ~g~t~~~CcCs~~~CN~n~s 130 (534)
T KOG3653|consen 111 PGQTLYFCCCSTDFCNANFS 130 (534)
T ss_pred CCCeEEEEecCCCcccCCcc
Confidence 453 5666656889998543
No 64
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.20 E-value=58 Score=26.83 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.++.+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 5678999999999985 66555 888888775
No 65
>COG3241 Azurin [Energy production and conversion]
Probab=31.69 E-value=38 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=20.6
Q ss_pred cCCc-eEEEeC----Ccc-cEEEEcCCCCCcCCCCeEEEE
Q 031614 86 ASHP-VQIQLN----STG-SRYFICTVDDHCGRGQKLAIT 119 (156)
Q Consensus 86 ~~G~-~~v~L~----~~G-~~YFiC~v~~hC~~GmKl~I~ 119 (156)
.+|+ ++++++ +.| .|-|.|+.|||-.- ||-.++
T Consensus 110 GgGE~~S~Tfd~~kL~~g~~Y~FfCtFPGH~AL-MkGtlt 148 (151)
T COG3241 110 GGGEETSLTFDPAKLADGVEYKFFCTFPGHGAL-MKGTLT 148 (151)
T ss_pred cCCccceEecCHHHhcCCceEEEEEecCCcHHh-hcceee
Confidence 4454 467776 356 45599999999532 554443
No 66
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=31.47 E-value=44 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=15.2
Q ss_pred CCccCchhHHHHHHHHHHHHhhhhhhhhhccC
Q 031614 1 MACRGLMPSVCCFMFGLAFLAASAAAAEYKLH 32 (156)
Q Consensus 1 MA~~~~~~~~~~~~~a~~~l~~~a~A~~~~~g 32 (156)
||+|-.+..+ +++++.. ..-+|-+|..|
T Consensus 1 MA~Kl~vial--LC~aLva--~vQ~APQYa~G 28 (65)
T PF10731_consen 1 MASKLIVIAL--LCVALVA--IVQSAPQYAPG 28 (65)
T ss_pred CcchhhHHHH--HHHHHHH--HHhcCcccCCC
Confidence 8988766444 3333322 33456667644
No 67
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=31.21 E-value=1.1e+02 Score=23.70 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=27.6
Q ss_pred CeEEeCCEEEEeecC------CCeeEEeCcccCCCCCCCCc
Q 031614 49 KTFEVGDSVMFNWST------THNVADVSKSEYDDCSKTSS 83 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~------~H~V~~V~~~~y~~C~~~~~ 83 (156)
...+.||++++.-.. .|..+-++....-.|+....
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 468999999986642 49999888888888987544
No 68
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.94 E-value=66 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=23.7
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.+..+++|.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4678899999999985 66544 888888765
No 69
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.39 E-value=21 Score=28.41 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.1
Q ss_pred CeEEeCCEEEEeecC-C----CeeEEe
Q 031614 49 KTFEVGDSVMFNWST-T----HNVADV 70 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~-~----H~V~~V 70 (156)
..+++||.++|+... . |.|..+
T Consensus 76 ~p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 76 DPIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred CcceeccEEEEEECCccCchhHHHHHH
Confidence 358999999999985 2 888776
No 70
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=30.18 E-value=7.9 Score=28.00 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCeEEeCCEEEEeecCCCeeEEeCcccCCC-CCCCCcc-----ccCCceEEEeCCcccEEEEcCCCCCcCCC-CeEEEEe
Q 031614 48 NKTFEVGDSVMFNWSTTHNVADVSKSEYDD-CSKTSSV-----VASHPVQIQLNSTGSRYFICTVDDHCGRG-QKLAITV 120 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~~H~V~~V~~~~y~~-C~~~~~~-----~~~G~~~v~L~~~G~~YFiC~v~~hC~~G-mKl~I~V 120 (156)
....+-||+++.+-+..-+|.++++..|+. ++...-. ++.-+..++....|.-|.+=. .|+..| -+..|+|
T Consensus 8 ~~~~~~Gd~V~V~ls~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID--~~g~~~~~~~si~v 85 (94)
T PF08980_consen 8 LGHLKRGDTVVVRLSHQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVID--SHGQSGEVEHSISV 85 (94)
T ss_dssp -----TT-------SSS-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS--------
T ss_pred hhccCCCCEEEEEeCCcccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEE--CCCCcEEEEEEEEe
Confidence 356778999999998888898888888865 4443322 444455778888884444433 366666 3566666
Q ss_pred c
Q 031614 121 K 121 (156)
Q Consensus 121 ~ 121 (156)
.
T Consensus 86 ~ 86 (94)
T PF08980_consen 86 I 86 (94)
T ss_dssp -
T ss_pred c
Confidence 6
No 71
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=29.97 E-value=34 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=20.7
Q ss_pred eEEEeCCcccEEEEcCCCCCcCCC
Q 031614 90 VQIQLNSTGSRYFICTVDDHCGRG 113 (156)
Q Consensus 90 ~~v~L~~~G~~YFiC~v~~hC~~G 113 (156)
+.+.++.-|-+-|+|+..+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 467888889999999999999864
No 72
>PLN02991 oxidoreductase
Probab=28.83 E-value=2.9e+02 Score=25.66 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred CeEEeCCEEEEeecCC---------CeeEEeCcccCCCCCCCCccccCCce---EEEe-CCcccEEEEcCCCCCcCCCCe
Q 031614 49 KTFEVGDSVMFNWSTT---------HNVADVSKSEYDDCSKTSSVVASHPV---QIQL-NSTGSRYFICTVDDHCGRGQK 115 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~---------H~V~~V~~~~y~~C~~~~~~~~~G~~---~v~L-~~~G~~YFiC~v~~hC~~GmK 115 (156)
.+++.||+|+.+..+. |.+.|......|.=..++.-...|.+ .|++ +++|++||=+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Q ss_pred EEEEecCCCCCCCC
Q 031614 116 LAITVKNSGNDTSS 129 (156)
Q Consensus 116 l~I~V~~~~~~~~a 129 (156)
-.+.|.+....+..
T Consensus 141 G~lIV~~~~~~~~p 154 (543)
T PLN02991 141 GAIRISSRPLIPVP 154 (543)
T ss_pred eeEEEeCCcccCcc
No 73
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.74 E-value=34 Score=30.21 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=12.2
Q ss_pred eEEeCCEEEEeecC
Q 031614 50 TFEVGDSVMFNWST 63 (156)
Q Consensus 50 tF~vGD~L~F~y~~ 63 (156)
..+.||+|+|+|+.
T Consensus 134 ~aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSG 147 (362)
T ss_pred cCCCCCEEEEEecC
Confidence 36789999999987
No 74
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.32 E-value=5.1e+02 Score=24.37 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCccCchhHHHHHHHHHHHHhhhhhhhhhc---------------------cCcccCCCccchhcccCCCeEEeCCEEEE
Q 031614 1 MACRGLMPSVCCFMFGLAFLAASAAAAEYK---------------------LHWIVPTSADYYTNWISNKTFEVGDSVMF 59 (156)
Q Consensus 1 MA~~~~~~~~~~~~~a~~~l~~~a~A~~~~---------------------~gW~~~~~~~~Y~~Wa~~~tF~vGD~L~F 59 (156)
|.......+..|..+.+.++..+.++..+. .|=-.+|. .+...||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~----------I~~~~gD~ivV 71 (563)
T KOG1263|consen 2 MDGVTLLLLFLCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPT----------INAEEGDTIVV 71 (563)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCe----------EEEEeCCEEEE
Q ss_pred eecC--C-------CeeEEe-CcccCCCCCCCCcc---ccCCce---EEEeC-CcccEEEEcCCCCCcCCCCeEEEEecC
Q 031614 60 NWST--T-------HNVADV-SKSEYDDCSKTSSV---VASHPV---QIQLN-STGSRYFICTVDDHCGRGQKLAITVKN 122 (156)
Q Consensus 60 ~y~~--~-------H~V~~V-~~~~y~~C~~~~~~---~~~G~~---~v~L~-~~G~~YFiC~v~~hC~~GmKl~I~V~~ 122 (156)
+..+ . |.|.|- +... |..-.+ ...|.. .|+++ +.|++|+-....-|=..|+.-.+.|.+
T Consensus 72 ~v~N~~~~~~sihWhGv~q~kn~w~----DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~ 147 (563)
T KOG1263|consen 72 NVVNRLDEPFSIHWHGVRQRKNPWQ----DGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINP 147 (563)
T ss_pred EEEeCCCCceEEEeccccccCCccc----cCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcC
Q ss_pred CC
Q 031614 123 SG 124 (156)
Q Consensus 123 ~~ 124 (156)
.+
T Consensus 148 ~~ 149 (563)
T KOG1263|consen 148 RP 149 (563)
T ss_pred Cc
No 75
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.43 E-value=87 Score=26.41 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=24.4
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.+++|.+|-.|+. -|-.| |.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5678899999999985 66554 9999888653
No 76
>PLN02792 oxidoreductase
Probab=26.93 E-value=2.4e+02 Score=26.11 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=50.9
Q ss_pred eEEeCCEEEEeecC----C-------CeeEEe--CcccCCC-----CCCCCcc-------ccCCce--EEEeCCcccEEE
Q 031614 50 TFEVGDSVMFNWST----T-------HNVADV--SKSEYDD-----CSKTSSV-------VASHPV--QIQLNSTGSRYF 102 (156)
Q Consensus 50 tF~vGD~L~F~y~~----~-------H~V~~V--~~~~y~~-----C~~~~~~-------~~~G~~--~v~L~~~G~~YF 102 (156)
.+.-|+++..-+.+ . |+...| ....|+. =|..+|. ...|.. +|..|.||.=.|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 45567776666543 1 477777 3445642 2344444 234433 678899999999
Q ss_pred EcCCCCCcCCCCeEEEEecCCC
Q 031614 103 ICTVDDHCGRGQKLAITVKNSG 124 (156)
Q Consensus 103 iC~v~~hC~~GmKl~I~V~~~~ 124 (156)
=|-...|=..||.+.+.|.+..
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~ 507 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPT 507 (536)
T ss_pred eEcchhccccceEEEEEEccCC
Confidence 9988889999999999888654
No 77
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=26.87 E-value=44 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=10.5
Q ss_pred CCeEEeCCEEEEeecC
Q 031614 48 NKTFEVGDSVMFNWST 63 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~ 63 (156)
....++||.++|++..
T Consensus 71 ~n~L~~GD~~~F~~~~ 86 (100)
T PF02362_consen 71 DNGLKEGDVCVFELIG 86 (100)
T ss_dssp HCT--TT-EEEEEE-S
T ss_pred HcCCCCCCEEEEEEec
Confidence 4778999999999976
No 78
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.83 E-value=60 Score=23.25 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhheeEeC
Q 031614 138 LYPGLAISLVYFLSYYYYI 156 (156)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (156)
+.+++.++.++..-|||+|
T Consensus 68 lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHHhhheEEEE
Confidence 5556666666667778875
No 79
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=26.70 E-value=72 Score=24.95 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=22.3
Q ss_pred hhhhccCcccCCC-c---cchhcccCCCeEEeCCEEEEeecC
Q 031614 26 AAEYKLHWIVPTS-A---DYYTNWISNKTFEVGDSVMFNWST 63 (156)
Q Consensus 26 A~~~~~gW~~~~~-~---~~Y~~Wa~~~tF~vGD~L~F~y~~ 63 (156)
+..|..+|.++.. + ..|- =....+.+.||.++|+.+.
T Consensus 19 ~~~~~~~~~~N~T~S~P~g~Y~-~~~~~~~~rGDiVvf~~p~ 59 (171)
T TIGR02771 19 LGLYCVGARINTTKSLPLGLYW-TTSSKPVERGDYVVFCPPD 59 (171)
T ss_pred hhcceeeEEEECCCCCcceEEE-eCCCCCCCCCcEEEEeCCC
Confidence 3555566444432 1 2333 1235689999999999865
No 80
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.16 E-value=95 Score=25.51 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~ 122 (156)
.+..++||.+|-.|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 4677899999999985 66555 888887765
No 81
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.57 E-value=1.1e+02 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.4
Q ss_pred EEEeCCcccEEEEcCCCCCcCCC---CeEEEEecCC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRG---QKLAITVKNS 123 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~G---mKl~I~V~~~ 123 (156)
.++.++||.+|-.|+. -|-.| |.+.|.|.+.
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEECH
Confidence 5678899999999985 66554 9999888753
No 82
>PRK10927 essential cell division protein FtsN; Provisional
Probab=24.39 E-value=60 Score=28.37 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhheeEeC
Q 031614 137 ALYPGLAISLVYFLSYYYYI 156 (156)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (156)
.+.++.++++|.|++-+|||
T Consensus 35 ~m~alAvavlv~fiGGLyFi 54 (319)
T PRK10927 35 AMVAIAAAVLVTFIGGLYFI 54 (319)
T ss_pred HHHHHHHHHHHHHhhheEEE
Confidence 46667778888888888876
No 83
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.88 E-value=37 Score=20.61 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=16.4
Q ss_pred cchhhhHHHHHHHHHHHHhheeEe
Q 031614 132 FVSVGALYPGLAISLVYFLSYYYY 155 (156)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~ 155 (156)
+...++..++++.++++.+...+|
T Consensus 3 ~s~IaIIv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 3 SSTIAIIVAVVVGMAIIIICMFYY 26 (38)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 445778777777777777665554
No 84
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=22.84 E-value=89 Score=21.64 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=13.0
Q ss_pred CeEEeCCEEEEeecCCCeeEEe
Q 031614 49 KTFEVGDSVMFNWSTTHNVADV 70 (156)
Q Consensus 49 ~tF~vGD~L~F~y~~~H~V~~V 70 (156)
.++++||+|.|..+....+.++
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L 62 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTAL 62 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEE
T ss_pred hhCCCCCEEEEEECCCCCEEEE
Confidence 4799999999999885555544
No 85
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=37 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.5
Q ss_pred CCCeEEeCCEEEEee
Q 031614 47 SNKTFEVGDSVMFNW 61 (156)
Q Consensus 47 ~~~tF~vGD~L~F~y 61 (156)
+.+..++||+|+|+=
T Consensus 30 krr~ik~GD~IiF~~ 44 (111)
T COG4043 30 KRRQIKPGDKIIFNG 44 (111)
T ss_pred hhcCCCCCCEEEEcC
Confidence 467899999999974
No 86
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=22.07 E-value=1.7e+02 Score=28.50 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=51.5
Q ss_pred hcccCCCeEEeCCEEEEeecCCCeeEEeCcccCCCCCCC---Ccc-----------ccCCceEEEeCCcccEEEEcCC--
Q 031614 43 TNWISNKTFEVGDSVMFNWSTTHNVADVSKSEYDDCSKT---SSV-----------VASHPVQIQLNSTGSRYFICTV-- 106 (156)
Q Consensus 43 ~~Wa~~~tF~vGD~L~F~y~~~H~V~~V~~~~y~~C~~~---~~~-----------~~~G~~~v~L~~~G~~YFiC~v-- 106 (156)
+.|.+-.. ..+|.+.+-|.+ +.|.+|-.. +|. .++++..+--.+.|.|=|-=.+
T Consensus 592 QtW~sm~~-~~~~~~~~~W~~---------eNY~~C~~~~~~~pl~~~~~~YqIln~~~~N~ii~~~~~g~YvF~~~ivD 661 (733)
T PF15020_consen 592 QTWSSMIE-NKHLPLEFAWGP---------ENYVSCFSYNIGKPLGWLNQPYQILNGSNDNHIIWPQRNGIYVFRVKIVD 661 (733)
T ss_pred cchHHHHh-CCCCChhhccCC---------CCcccccCCCCCCCCCCCCCCeEEccCCCcceEEcCCCCeEEEEEEEEeC
Confidence 45776666 777888887755 677788432 231 1233333322668877554333
Q ss_pred --CCCcCCCCeEEEEecCCCCCCCCCccch
Q 031614 107 --DDHCGRGQKLAITVKNSGNDTSSASFVS 134 (156)
Q Consensus 107 --~~hC~~GmKl~I~V~~~~~~~~ap~~~~ 134 (156)
-..|+----++|-|-.+-|.+..++..+
T Consensus 662 P~YSyC~L~t~Fai~v~G~~P~~~~~~~~~ 691 (733)
T PF15020_consen 662 PYYSYCNLTTIFAIYVYGAIPRPSVYPVAT 691 (733)
T ss_pred CCCCccceEEEEEEEEeccCCccccchHHH
Confidence 4689999999999998766665554443
No 87
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=21.82 E-value=72 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.5
Q ss_pred CCeEEeCCEEEEeecC
Q 031614 48 NKTFEVGDSVMFNWST 63 (156)
Q Consensus 48 ~~tF~vGD~L~F~y~~ 63 (156)
++.|..||.+.|.+..
T Consensus 16 ~~pv~~Gd~i~~~~~~ 31 (64)
T PF02933_consen 16 GRPVTKGDTIVFPFFG 31 (64)
T ss_dssp TEEEETT-EEEEEETT
T ss_pred CCCccCCCEEEEEeCC
Confidence 6899999999999975
No 88
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.60 E-value=68 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=18.0
Q ss_pred hhcccCCCeEEeCCEEEEeec
Q 031614 42 YTNWISNKTFEVGDSVMFNWS 62 (156)
Q Consensus 42 Y~~Wa~~~tF~vGD~L~F~y~ 62 (156)
-++++...+..+||.|+|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 568888999999999998764
No 89
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=76 Score=24.33 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.4
Q ss_pred cCCCeEEeCCEEEEeecCCCeeEEe
Q 031614 46 ISNKTFEVGDSVMFNWSTTHNVADV 70 (156)
Q Consensus 46 a~~~tF~vGD~L~F~y~~~H~V~~V 70 (156)
..++-|.-=|-|+|..+++|+|.+|
T Consensus 87 ~~Srlf~FVDDlEfyl~~d~~vi~v 111 (141)
T COG4446 87 CTSRLFGFVDDLEFYLPQDHNVIWV 111 (141)
T ss_pred HHHHHhhcccceEEecCCCCceEEE
Confidence 3356788889999999999999999
No 90
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=21.08 E-value=55 Score=23.54 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=27.8
Q ss_pred EEEeCCcccEEEEcCCCCCcCCCCeEEEEecC
Q 031614 91 QIQLNSTGSRYFICTVDDHCGRGQKLAITVKN 122 (156)
Q Consensus 91 ~v~L~~~G~~YFiC~v~~hC~~GmKl~I~V~~ 122 (156)
.+..+.||.+.|=|-+-.|=.+||-..+.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 56788999999999999999999999999875
No 91
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.05 E-value=2.1e+02 Score=20.93 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=17.8
Q ss_pred EEEEcCCCCCcCCCCeEEEEecCC
Q 031614 100 RYFICTVDDHCGRGQKLAITVKNS 123 (156)
Q Consensus 100 ~YFiC~v~~hC~~GmKl~I~V~~~ 123 (156)
..+-...+-..+.|+++.|.+.+.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~~~ 65 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIPES 65 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEeccc
Confidence 445556677888999999888765
Done!