BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031615
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143
Length = 143
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFXDLKRPGYRVKEIGSTXS--GRKGTDDSXTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143
pdb|4A90|B Chain B, Crystal Structure Of Mouse Sap18 Residues 1-143
Length = 143
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex
Length = 130
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 5 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 64
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 65 PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 122
Query: 154 AI 155
AI
Sbjct: 123 AI 124
>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18
Length = 148
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKT PLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 17 KPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 76
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 77 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 134
Query: 154 AI 155
AI
Sbjct: 135 AI 136
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 29.3 bits (64), Expect = 0.95, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 43 CPLLLRVFTKIGGH--------HSREDFAVRGKEPKDEVQIYTWKDATLRE 85
C LL+ K+G +S D+A + V ++ WK+ TL E
Sbjct: 59 CALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEE 109
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 101 DARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDD 136
DA+L+ F+ PDK+ +F ++ FS + +++ D
Sbjct: 89 DAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGD 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,116,376
Number of Sequences: 62578
Number of extensions: 150255
Number of successful extensions: 352
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 10
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)