BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031615
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana
GN=At2g45640 PE=1 SV=1
Length = 152
Score = 209 bits (531), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 112/127 (88%)
Query: 29 PPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTD 88
PPRP+ EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTD
Sbjct: 25 PPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTD 84
Query: 89 LVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIG 148
LVKEV+ AARRR+ARLSFAFVYP+ G + VREVG+T +Y R+Q DD K L+EL FEIG
Sbjct: 85 LVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIG 144
Query: 149 DYLDVAI 155
DYLDVAI
Sbjct: 145 DYLDVAI 151
>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18
PE=2 SV=1
Length = 153
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18
PE=2 SV=1
Length = 153
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18
PE=1 SV=1
Length = 153
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18
PE=1 SV=1
Length = 153
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 94
+P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77
Query: 95 PAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153
P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+
Sbjct: 78 PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDI 135
Query: 154 AI 155
AI
Sbjct: 136 AI 137
>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila
melanogaster GN=Bin1 PE=1 SV=1
Length = 150
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 86/126 (68%), Gaps = 4/126 (3%)
Query: 31 RPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLV 90
+ + + +DREKTCP+LLRVF G HHS ++ G P +E+QIYTW+DATL ELT LV
Sbjct: 12 KTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLV 70
Query: 91 KEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGD 149
++V P R++ FA VYP+ ++ F +RE+G T + G++ +DD K LA+ F IGD
Sbjct: 71 RDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGD 128
Query: 150 YLDVAI 155
+LD++I
Sbjct: 129 FLDISI 134
>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18
OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1
Length = 166
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 80/124 (64%), Gaps = 5/124 (4%)
Query: 35 EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKE 92
+P+DREK CP+LLRVF H+ ++ R G P E+Q++TW D +LRELT L+KE
Sbjct: 16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKE 75
Query: 93 VAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151
V P ARR+ FA V D+ R+++R+VG T + G R +DD K L + FE+GD++
Sbjct: 76 VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFV 133
Query: 152 DVAI 155
DVAI
Sbjct: 134 DVAI 137
>sp|O94405|YQFD_SCHPO Uncharacterized protein C126.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC126.13c PE=3 SV=1
Length = 145
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV----APAAR 98
CP L+ V+ + + D ++ +Q+Y W TL EL L+ + R
Sbjct: 23 CPFLISVYHQFQTKNHVLDIF---EDVIPSIQVYGWLTMTLYELGVLIADQLLLNNEETR 79
Query: 99 RRDARLSFAFVYPDK-NGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155
+ L ++ DK R + R++G T + K+L G + GD +DV I
Sbjct: 80 HSEWSLQIRTIFYDKYKDRPIARDLG-TVCLHNPKLFQGNKLLKRTGIKCGDKIDVTI 136
>sp|A8LB08|RS13_FRASN 30S ribosomal protein S13 OS=Frankia sp. (strain EAN1pec) GN=rpsM
PE=3 SV=1
Length = 126
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 33 RFEPVD--REKTCPLLLRVFTKIGGHHSREDFAVRGKEP--------KDEVQ-IYTWKDA 81
R VD REK + L IG SR+ A G P DEVQ + W DA
Sbjct: 3 RLSGVDLPREKRVEIALTYIFGIGRSRSRDTLAATGVNPDTRVRDLTDDEVQKLREWIDA 62
Query: 82 TLRELTDLVKEVAPAARRR 100
R DL +E+ RR+
Sbjct: 63 NYRVEGDLNREIKQDIRRK 81
>sp|Q0RRP6|RS13_FRAAA 30S ribosomal protein S13 OS=Frankia alni (strain ACN14a) GN=rpsM
PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 33 RFEPVD--REKTCPLLLRVFTKIGGHHSREDFAVRGKEP--------KDE-VQIYTWKDA 81
R VD REK + L IG SRE A G P +DE V++ W DA
Sbjct: 3 RLSGVDLPREKRVEIALTYIFGIGRTRSRETLAATGVNPDTRVRDLSEDEIVRLREWIDA 62
Query: 82 TLRELTDLVKEVAPAARRR 100
R DL +E+ RR+
Sbjct: 63 NYRVEGDLNREIKQDIRRK 81
>sp|Q0UQJ8|STU1_PHANO Protein STU1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) GN=STU1 PE=3 SV=1
Length = 1207
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 26 PPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRE 85
PPPPP R P+ + R T H + A P + V + T RE
Sbjct: 239 PPPPPAVRERPLPTQ-------RAQTLQPDHGIADALAAEQPPPTEAVTMDPIHIYTQRE 291
Query: 86 LTDLVKEVAPAARRRDA 102
L D+ +++AP R++
Sbjct: 292 LEDIFRDMAPPFEGRES 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,221,530
Number of Sequences: 539616
Number of extensions: 3075568
Number of successful extensions: 25013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 24075
Number of HSP's gapped (non-prelim): 737
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)