Query 031615
Match_columns 156
No_of_seqs 105 out of 157
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6q_A Histone deacetylase com 100.0 2.2E-61 7.6E-66 377.4 14.9 122 32-156 15-138 (143)
2 1j8c_A Ubiquitin-like protein 96.7 0.036 1.2E-06 40.8 11.9 97 14-155 6-102 (125)
3 1v2y_A 3300001G02RIK protein; 81.5 2.8 9.6E-05 30.1 5.3 65 72-154 19-93 (105)
4 3n3k_B Ubiquitin; hydrolase, p 80.8 6.6 0.00023 25.2 6.5 59 73-155 16-74 (85)
5 4fbj_B NEDD8; effector-HOST ta 78.9 5.4 0.00018 26.6 5.8 60 72-155 12-71 (88)
6 1uel_A HHR23B, UV excision rep 77.0 7.7 0.00026 26.2 6.2 60 73-155 13-74 (95)
7 1wx7_A Ubiquilin 3; ubiquitin- 77.0 15 0.00052 25.2 8.7 56 76-155 32-87 (106)
8 2wyq_A HHR23A, UV excision rep 76.9 8.9 0.0003 24.7 6.3 59 74-155 19-79 (85)
9 3k9o_B Ubiquitin, UBB+1; E2-25 76.7 6.6 0.00023 26.1 5.7 60 72-155 13-72 (96)
10 4hcn_B Polyubiquitin, ubiquiti 76.1 6.5 0.00022 26.7 5.6 59 73-155 35-93 (98)
11 2dzi_A Ubiquitin-like protein 75.9 6.2 0.00021 25.1 5.2 59 73-155 20-78 (81)
12 2kd0_A LRR repeats and ubiquit 75.6 3.5 0.00012 27.6 4.1 61 71-155 22-82 (85)
13 3mtn_B UBA80, ubcep1, ubiquiti 75.4 8.4 0.00029 24.6 5.8 60 72-155 15-74 (85)
14 3dbh_I NEDD8; cell cycle, acti 73.8 7.5 0.00026 25.2 5.3 59 73-155 25-83 (88)
15 3v6c_B Ubiquitin; structural g 73.2 9.5 0.00033 25.3 5.8 59 73-155 30-88 (91)
16 3phx_B Ubiquitin-like protein 73.2 11 0.00038 24.1 5.9 60 72-155 16-75 (79)
17 2kdi_A Ubiquitin, vacuolar pro 72.7 7.8 0.00027 27.4 5.5 77 55-155 3-80 (114)
18 3m62_B UV excision repair prot 72.4 8.6 0.00029 26.7 5.6 60 72-155 13-72 (106)
19 2uyz_B Small ubiquitin-related 72.3 5.5 0.00019 25.6 4.2 60 72-155 15-74 (79)
20 3onh_A Ubiquitin-activating en 70.8 2.8 9.7E-05 31.8 2.9 56 78-154 17-77 (127)
21 2d07_B Ubiquitin-like protein 70.8 12 0.0004 25.8 5.9 60 72-155 29-88 (93)
22 2gow_A HCG-1 protein, ubiquiti 68.8 13 0.00044 27.3 6.1 59 77-154 34-95 (125)
23 1sif_A Ubiquitin; hydrophobic 67.5 12 0.00042 24.8 5.3 61 71-155 20-80 (88)
24 2pjh_A Protein NPL4, nuclear p 66.9 10 0.00035 25.5 4.9 76 43-154 3-78 (80)
25 4a20_A Ubiquitin-like protein 66.4 19 0.00064 25.2 6.3 57 76-155 37-94 (98)
26 1wia_A Hypothetical ubiquitin- 66.2 12 0.00042 25.0 5.1 54 76-155 23-76 (95)
27 2klc_A Ubiquilin-1; ubiquitin- 64.3 20 0.0007 24.5 6.1 59 73-155 37-95 (101)
28 1yx5_B Ubiquitin; proteasome, 64.1 21 0.00072 23.9 6.1 59 73-155 13-71 (98)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 63.9 18 0.00061 23.4 5.5 58 74-155 21-78 (87)
30 1wgh_A Ubiquitin-like 3, HCG-1 63.4 21 0.00072 25.9 6.3 60 77-155 33-95 (116)
31 3qx1_A FAS-associated factor 1 62.2 11 0.00038 25.1 4.3 56 79-154 26-81 (84)
32 1wyw_B Ubiquitin-like protein 61.9 12 0.0004 25.5 4.4 75 43-155 18-92 (97)
33 1wx8_A Riken cDNA 4931431F19; 61.3 11 0.00039 25.1 4.2 59 73-155 29-87 (96)
34 4b6w_A Tubulin-specific chaper 60.1 12 0.0004 25.5 4.1 58 79-153 23-80 (86)
35 3vdz_A Ubiquitin-40S ribosomal 58.5 26 0.00088 24.4 5.8 59 73-155 48-106 (111)
36 1wju_A NEDD8 ultimate buster-1 57.7 25 0.00085 25.0 5.7 60 72-155 31-90 (100)
37 2ojr_A Ubiquitin; lanthide-bin 57.4 34 0.0012 23.7 6.3 59 73-155 48-106 (111)
38 3m63_B Ubiquitin domain-contai 55.7 20 0.00069 24.7 4.9 58 74-155 41-98 (101)
39 1wy8_A NP95-like ring finger p 55.3 37 0.0013 21.9 6.0 55 77-155 26-80 (89)
40 3a9j_A Ubiquitin; protein comp 54.4 9.3 0.00032 23.7 2.7 59 73-155 13-71 (76)
41 2io0_B Small ubiquitin-related 53.4 40 0.0014 23.1 6.1 60 72-155 17-76 (91)
42 3goe_A DNA repair protein RAD6 53.0 30 0.001 24.4 5.3 61 72-155 21-81 (82)
43 1x1m_A Ubiquitin-like protein 52.0 25 0.00085 24.3 4.8 55 79-155 42-98 (107)
44 2kan_A Uncharacterized protein 51.9 45 0.0015 22.5 6.1 60 72-155 26-86 (94)
45 1ndd_A NEDD8, protein (ubiquit 50.7 12 0.0004 23.2 2.7 59 73-155 13-71 (76)
46 1v5o_A 1700011N24RIK protein; 49.2 24 0.00082 24.1 4.4 60 73-155 24-83 (102)
47 4dwf_A HLA-B-associated transc 48.8 39 0.0013 22.0 5.2 58 73-155 18-75 (90)
48 3a4r_A Nfatc2-interacting prot 48.2 38 0.0013 22.3 5.1 58 72-153 20-77 (79)
49 1ttn_A DC-UBP, dendritic cell- 47.1 42 0.0014 23.0 5.4 57 75-155 38-94 (106)
50 2eke_C Ubiquitin-like protein 46.0 39 0.0013 24.1 5.2 60 72-155 42-101 (106)
51 2hj8_A Interferon-induced 17 k 45.8 31 0.001 22.7 4.3 57 75-155 19-75 (88)
52 2dzj_A Synaptic glycoprotein S 45.3 47 0.0016 22.4 5.3 57 76-153 29-85 (88)
53 2kdb_A Homocysteine-responsive 43.2 52 0.0018 22.8 5.4 57 74-153 39-98 (99)
54 2faz_A Ubiquitin-like containi 43.1 17 0.00059 23.0 2.6 55 77-155 21-75 (78)
55 1wgd_A Homocysteine-responsive 42.8 68 0.0023 21.1 5.8 60 73-155 22-84 (93)
56 2bps_A YUKD protein; ubiquitin 42.2 37 0.0013 23.4 4.4 56 79-153 25-80 (81)
57 2bwf_A Ubiquitin-like protein 41.0 20 0.00068 22.4 2.7 56 76-155 19-74 (77)
58 1wz0_A Ubiquitin-like protein 40.0 38 0.0013 23.9 4.3 60 72-155 36-95 (104)
59 2io1_B Small ubiquitin-related 39.8 19 0.00065 24.8 2.6 60 72-155 19-78 (94)
60 1wm3_A Ubiquitin-like protein 39.3 18 0.0006 23.4 2.2 60 72-155 13-72 (72)
61 4eew_A Large proline-rich prot 35.6 84 0.0029 20.2 5.2 58 73-155 30-87 (88)
62 1wxv_A BAG-family molecular ch 35.5 92 0.0032 20.3 6.0 52 80-154 31-82 (92)
63 2lxa_A Ubiquitin-like protein 34.6 85 0.0029 21.1 5.3 54 79-155 22-76 (87)
64 1wjn_A Tubulin-folding protein 32.2 33 0.0011 23.1 2.8 60 79-155 31-91 (97)
65 2kk8_A Uncharacterized protein 31.6 18 0.0006 24.1 1.3 61 72-155 22-82 (84)
66 2l7r_A Ubiquitin-like protein 31.1 20 0.00069 24.1 1.5 55 77-155 34-88 (93)
67 2dzk_A UBX domain-containing p 30.8 50 0.0017 23.2 3.6 56 79-153 32-87 (109)
68 1wj0_A Squamosa promoter-bindi 29.8 16 0.00056 24.1 0.8 14 50-63 46-60 (60)
69 2k8h_A Small ubiquitin protein 29.6 37 0.0013 24.3 2.8 60 72-155 38-97 (110)
70 1we6_A Splicing factor, putati 29.6 33 0.0011 23.7 2.5 59 73-155 43-102 (111)
71 1s3s_G P47 protein; AAA ATPase 29.3 59 0.002 23.5 3.9 50 79-148 71-120 (127)
72 3q3f_A Ribonuclease/ubiquitin 28.9 1.1E+02 0.0039 23.7 5.7 60 72-155 117-176 (189)
73 2l76_A Nfatc2-interacting prot 28.5 25 0.00085 25.2 1.7 21 136-156 72-92 (95)
74 3b1l_X E3 ubiquitin-protein li 33.9 13 0.00043 23.5 0.0 21 135-155 51-71 (76)
75 1yqb_A Ubiquilin 3; structural 26.8 28 0.00096 23.8 1.7 56 76-155 37-92 (100)
76 3gge_A PDZ domain-containing p 26.7 92 0.0031 21.8 4.4 29 79-112 62-90 (95)
77 3rt3_B Ubiquitin-like protein 25.6 45 0.0015 24.0 2.7 21 135-155 132-152 (159)
78 2kzr_A Ubiquitin thioesterase 25.6 31 0.0011 22.7 1.7 56 79-153 19-74 (86)
79 1gcq_C VAV proto-oncogene; SH3 25.3 35 0.0012 21.2 1.8 17 138-154 22-38 (70)
80 1v6e_A Cytoskeleton-associated 25.2 41 0.0014 22.6 2.2 59 79-154 27-85 (95)
81 2eki_A DRG 1, developmentally- 24.1 1.9E+02 0.0066 20.4 6.9 27 79-111 34-60 (93)
82 3b08_A Polyubiquitin-C, ubiqui 23.4 53 0.0018 22.9 2.7 58 74-155 90-147 (152)
83 3rt3_B Ubiquitin-like protein 23.1 53 0.0018 23.6 2.6 60 73-155 15-75 (159)
84 3j20_E 30S ribosomal protein S 22.6 1.2E+02 0.0041 24.9 5.0 41 81-122 57-115 (243)
85 1oqy_A HHR23A, UV excision rep 22.4 98 0.0034 26.5 4.6 58 75-153 22-79 (368)
86 1k1z_A VAV; SH3, proto-oncogen 22.3 42 0.0014 21.4 1.8 15 140-154 32-46 (78)
87 2fpe_A C-JUN-amino-terminal ki 22.2 45 0.0015 20.3 1.8 13 141-153 18-30 (62)
88 4e6r_A Cytoplasmic protein NCK 21.7 47 0.0016 19.6 1.8 14 141-154 16-29 (58)
89 1wf9_A NPL4 family protein; be 21.7 42 0.0014 23.2 1.8 20 135-154 73-92 (107)
90 1jo8_A ABP1P, actin binding pr 21.5 47 0.0016 19.9 1.8 14 141-154 15-28 (58)
91 2a28_A BZZ1 protein; SH3 domai 21.3 49 0.0017 19.5 1.8 14 141-154 15-28 (54)
92 1k4u_S Phagocyte NADPH oxidase 21.3 49 0.0017 20.1 1.9 14 141-154 20-33 (62)
93 2kjr_A CG11242; UBL, ubiquitin 21.1 38 0.0013 23.3 1.5 57 79-153 36-92 (95)
94 1tg0_A BBC1 protein, myosin ta 20.7 49 0.0017 20.5 1.8 14 141-154 22-35 (68)
95 2jte_A CD2-associated protein; 20.6 50 0.0017 20.1 1.8 14 141-154 21-34 (64)
96 1sem_A SEM-5; SRC-homology 3 ( 20.5 51 0.0018 19.6 1.8 14 141-154 17-30 (58)
97 2cr5_A Reproduction 8; UBX dom 20.3 1.1E+02 0.0036 21.4 3.7 54 79-153 42-95 (109)
98 3l0w_B Monoubiquitinated proli 20.3 64 0.0022 24.2 2.7 59 73-155 13-71 (169)
99 2bz8_A SH3-domain kinase bindi 20.2 52 0.0018 19.7 1.8 14 141-154 16-29 (58)
100 3u23_A CD2-associated protein; 20.2 52 0.0018 19.8 1.8 14 141-154 22-35 (65)
101 2g6f_X RHO guanine nucleotide 20.2 52 0.0018 19.7 1.8 14 141-154 19-32 (59)
102 3u5e_m 60S ribosomal protein L 20.2 22 0.00075 25.4 0.0 22 134-155 50-71 (128)
103 1zuy_A Myosin-5 isoform; SH3 d 20.1 53 0.0018 19.4 1.8 14 141-154 16-29 (58)
No 1
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=100.00 E-value=2.2e-61 Score=377.36 Aligned_cols=122 Identities=53% Similarity=0.881 Sum_probs=115.9
Q ss_pred CCCCCCCccCCCCcEEEEEecc-CCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEe
Q 031615 32 PRFEPVDREKTCPLLLRVFTKI-GGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVY 110 (156)
Q Consensus 32 ~~~~~iDRektcPFLLRvF~~~-g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VY 110 (156)
...++|||||||||||||||++ |+||+++||+ +|++|+||||||||+|||||||++|||+++|++|++||+|+|++||
T Consensus 15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~-~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vy 93 (143)
T 4a6q_A 15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVF 93 (143)
T ss_dssp CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGC-TTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEE
T ss_pred CCCCCccccCCCCeEEEEEecCCCCCCCHHHcc-CCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEc
Confidence 4456799999999999999999 7999999998 5899999999999999999999999999999999999999999999
Q ss_pred eC-CCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEeC
Q 031615 111 PD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAIL 156 (156)
Q Consensus 111 pD-~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI~ 156 (156)
|| ++|+|.+||||+|++|.++ .||+|||++++|+|||||||||+
T Consensus 94 pD~r~~ry~~kdlGsv~~g~~~--~dd~kTL~~~rF~iGDyidvaI~ 138 (143)
T 4a6q_A 94 MDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLDIAIT 138 (143)
T ss_dssp ECSSSSSEEEEEEEEEETTBCC--TTTTCBTGGGTCCTTCEEEEEEE
T ss_pred ccCCCCceeeccCCEEecCCCC--CcccccHHHCCCcCCCEEEEEEe
Confidence 99 5689999999999999988 68999999999999999999995
No 2
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.72 E-value=0.036 Score=40.79 Aligned_cols=97 Identities=14% Similarity=0.274 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhh
Q 031615 14 RSRPLHPSGRGPPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 93 (156)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~iDRektcPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~ 93 (156)
.++..|+|-||.++|+..+....-+ =.++||++.. . ..+.|-...+.|+.+|-..|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~s~~~~~~~------~~m~I~Vk~~--g-------------~~~~l~v~~~~TV~~LK~~I~~~ 64 (125)
T 1j8c_A 6 ESSGPPRPSRGPAAAQGSAAAPAEP------KIIKVTVKTP--K-------------EKEEFAVPENSSVQQFKEAISKR 64 (125)
T ss_dssp CCCCCCSSCCCSCCCCCSSSCCCCC------CCEEEEEECS--S-------------CEEEEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCChhhCCcCCCCCCcccCCC------CcEEEEEEeC--C-------------eEEEEEECCCCcHHHHHHHHHHH
Confidence 3666777778876665544443322 2378888752 0 12344456789999999999875
Q ss_pred CccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 94 APAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 94 ~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
.- ..... .+++|- |.+ .+|++||.+++..-|+.|.|.+
T Consensus 65 ~g-ip~~~----QrLi~~-----------Gk~--------L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 65 FK-SQTDQ----LVLIFA-----------GKI--------LKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp HC-SCSSS----EEEEET-----------TEE--------ESTTSCGGGTTCSSSEEEEEEE
T ss_pred HC-cCcce----EEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEEEEEe
Confidence 21 11111 234442 222 2466999999999999888754
No 3
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.53 E-value=2.8 Score=30.13 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=42.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCce-E-------EEEEEeeCCCCCceeeecceEeecCCCCCCCcccccc
Q 031615 72 EVQIYTWKDATLRELTDLVKEVA--PAARRRDAR-L-------SFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLA 141 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~--p~ar~~gtr-l-------sFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~ 141 (156)
++.|=.=.++|+.||=..|.+.. |..+..|.+ . .|+++|. |.+. .||++||.
T Consensus 19 ~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~-----------Gk~L-------~dD~~tL~ 80 (105)
T 1v2y_A 19 VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA-----------GEKL-------TEDRKKLR 80 (105)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS-----------SCEE-------CCSSSBHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC-----------CcCc-------cCCcCCHH
Confidence 34444457899999999998865 233333322 1 2466654 1111 36889999
Q ss_pred ccCcccCcEEEEE
Q 031615 142 ELGFEIGDYLDVA 154 (156)
Q Consensus 142 d~rF~iGDyidvA 154 (156)
+++..-||.|-+.
T Consensus 81 dygI~~g~~l~lv 93 (105)
T 1v2y_A 81 DYGIRNRDEVSFI 93 (105)
T ss_dssp HHTCCSSEEEEEE
T ss_pred HcCCCCCCEEEEE
Confidence 9999999998764
No 4
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=80.78 E-value=6.6 Score=25.23 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=39.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.||-..|.+..- ... . ..+++|- |.. .+|++||.++++.-||-|.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~-ip~--~--~qrL~~~-----------g~~--------L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEG-IPP--D--QQRLIFA-----------GKQ--------LEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHC-CCG--G--GEEEEET-----------BEE--------CCTTCBTTTTTCCTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHC-CCH--H--HEEEEEC-----------CeE--------CCCCCCHHHCCCCCCCEEE
Confidence 44455578999999999987521 100 1 1355552 111 2567899999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 72 l~~ 74 (85)
T 3n3k_B 72 LLL 74 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=78.89 E-value=5.4 Score=26.64 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=39.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|+.||-..|.+..- ..... .+++|- |.. .+|++||.++++.-|+.|
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~-----------Gk~--------L~D~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 12 EIEIDIEPTDKVERIKERVEEKEG-IPPQQ----QRLIYS-----------GKQ--------MNDEKTAADYKILGGSVL 67 (88)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHC-CCGGG----CEEEET-----------TEE--------CCTTSBTTTTTCCTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-cChhH----EEEEEC-----------CeE--------CCCCCcHHHcCCCCCCEE
Confidence 455566688999999999987522 11111 133331 111 356899999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 68 ~l~~ 71 (88)
T 4fbj_B 68 HLVL 71 (88)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.03 E-value=7.7 Score=26.21 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=38.8
Q ss_pred eeeeecCCCCHHHHHHHHHhhCc--cccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAP--AARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDY 150 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p--~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDy 150 (156)
+.|-...+.|+.||-..|.+... ...... .+++|. |.+ .+|++||.+++..-|+.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~----qrLi~~-----------Gk~--------L~D~~tL~~ygI~~g~~ 69 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAG----QKLIYA-----------GKI--------LNDDTALKEYKIDEKNF 69 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTT----EEEEET-----------TEE--------CCTTSBGGGGTCCSSSE
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhh----EEEEEC-----------CEE--------CCCcCcHHHCCCCCCCE
Confidence 34445678999999999998631 111111 233442 211 24669999999999999
Q ss_pred EEEEe
Q 031615 151 LDVAI 155 (156)
Q Consensus 151 idvAI 155 (156)
|.|.+
T Consensus 70 i~l~~ 74 (95)
T 1uel_A 70 VVVMV 74 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 7
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.99 E-value=15 Score=25.18 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=36.4
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
-...+.|+.||-..|.+..- ..... .+++|- |.+ .+|++||.++++.-|+.|.+.+
T Consensus 32 ~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~-----------Gk~--------L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 32 SVTDTCTIQQLKEEISQRFK-AHPDQ----LVLIFA-----------GKI--------LKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp EEETTCCHHHHHHHHHHHHT-CCTTT----EEEEET-----------TEE--------CCTTSCHHHHTCCTTEEEEEEE
T ss_pred EECCCCcHHHHHHHHHHHHC-cChhh----EEEEEC-----------CEE--------CCCcCcHHHcCCCCCCEEEEEE
Confidence 34578999999999987521 11111 233442 111 2467999999999999888764
No 8
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=76.90 E-value=8.9 Score=24.73 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=38.3
Q ss_pred eeeecCCCCHHHHHHHHHhhC--ccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 74 QIYTWKDATLRELTDLVKEVA--PAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 74 QIYTW~DaTLrEL~~Llk~~~--p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.|-...+.|+.||-..|.+.. ....... .+++|- |.+ .+|++||.+++..-|+.|
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~~----qrLi~~-----------Gk~--------L~D~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVAG----QKLIYA-----------GKI--------LSDDVPIRDYRIDEKNFV 75 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGGG----EEEEET-----------TEE--------CCTTSBGGGGCCCTTSEE
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHHH----eEEEEC-----------CEE--------CcCCCCHHHcCCCCCCEE
Confidence 344457899999999999852 1111111 234442 211 356799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 76 ~l~~ 79 (85)
T 2wyq_A 76 VVMV 79 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 9
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=76.67 E-value=6.6 Score=26.12 Aligned_cols=60 Identities=13% Similarity=0.331 Sum_probs=39.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...++|+.||-..|.+..- ..... .+++|- |.. .+|++||.++++.-|+-|
T Consensus 13 ~~~~~v~~~~TV~~LK~~i~~~~g-ip~~~----qrL~~~-----------G~~--------L~d~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 13 TITLEVEPSDTIENVKAKIQDKEG-IPPDQ----QRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTL 68 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHC-CCGGG----EEEEET-----------TEE--------CCTTSBTGGGTCCTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHhhhC-CChhH----EEEEEC-----------CEE--------CCCCCcHHHcCCCCCCEE
Confidence 344555678999999999987531 11011 244442 111 356789999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 69 ~l~~ 72 (96)
T 3k9o_B 69 HLVL 72 (96)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=76.09 E-value=6.5 Score=26.74 Aligned_cols=59 Identities=14% Similarity=0.342 Sum_probs=38.0
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.||-..|.+...- .... .+++|- |.. .+|++||.++++.-|+-|.
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gi-p~~~----qrLi~~-----------Gk~--------L~D~~tL~~~~i~~g~~i~ 90 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGI-PPDQ----QRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTLH 90 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCC-CGGG----CEEEET-----------TEE--------CCTTCBSGGGTCCTTEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCC-ChhH----EEEEEC-----------CEE--------CCCCCcHHHCCCCCCCEEE
Confidence 344455788999999999875321 0000 134442 111 3577999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 91 l~~ 93 (98)
T 4hcn_B 91 LVL 93 (98)
T ss_dssp EEC
T ss_pred EEE
Confidence 764
No 11
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.93 E-value=6.2 Score=25.13 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=38.2
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.||-..|.+..- .....- +++|. |.. .+|++||.+++..-|+-|.
T Consensus 20 ~~~~v~~~~tV~~LK~~i~~~~~-i~~~~q----rL~~~-----------gk~--------L~d~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 20 CSLQVPEDELVSTLKQLVSEKLN-VPVRQQ----RLLFK-----------GKA--------LADGKRLSDYSIGPNSKLN 75 (81)
T ss_dssp EEEEECSSCBHHHHHHHHHHHTC-CCTTTC----EEEET-----------TEE--------CCTTSBGGGGTCCSSBCCE
T ss_pred EEEEECCCCcHHHHHHHHHHHHC-cCHHHE----EEEEC-----------CeE--------CCCCCcHHHcCCCCCCEEE
Confidence 34455688999999999987531 111112 23332 211 2467999999999999887
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 76 l~~ 78 (81)
T 2dzi_A 76 LVV 78 (81)
T ss_dssp EEC
T ss_pred EEE
Confidence 754
No 12
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=75.64 E-value=3.5 Score=27.62 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=40.1
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcE
Q 031615 71 DEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDY 150 (156)
Q Consensus 71 ~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDy 150 (156)
..+.|-...++|+.||-..|.+.. ......-++ +|- |.. .+|++||.+++..-|+-
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL----~~~-----------Gk~--------L~D~~tL~~~gi~~g~~ 77 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKL----IFK-----------GKV--------LVETSTLKQSDVGSGAK 77 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEE----EET-----------TEE--------CCTTCBTTTTTCCTTEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEE----EEC-----------CeE--------CCCcCCHHHCCCCCCCE
Confidence 356667778999999999998742 111112222 231 211 35679999999999998
Q ss_pred EEEEe
Q 031615 151 LDVAI 155 (156)
Q Consensus 151 idvAI 155 (156)
|.+.+
T Consensus 78 l~l~~ 82 (85)
T 2kd0_A 78 LMLMA 82 (85)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87754
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=75.45 E-value=8.4 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.286 Sum_probs=39.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-.-.++|+.||-..|.+..--. ... .+++|. | .+ .+|++||.++++.-|+-|
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~----qrL~~~---g--------~~--------L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIP-PDQ----QRLIFA---G--------KQ--------LEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCC-GGG----CEEEET---T--------EE--------CCTTSBTGGGTCCTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcC-hHH----EEEEEC---C--------EE--------CCCCCCHHHcCCCCCCEE
Confidence 34555668899999999998753210 000 234442 1 11 246799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 71 ~l~~ 74 (85)
T 3mtn_B 71 FLLL 74 (85)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8865
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.82 E-value=7.5 Score=25.18 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=38.3
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.||-..|.+..- ..... .+++|- | + ..+|++||.++++.-|+.|.
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~g-ip~~~----qrL~~~-----------G-----~---~L~d~~tL~~~~i~~~~~i~ 80 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEG-IPPQQ----QRLIYS-----------G-----K---QMNDEKTAADYKILGGSVLH 80 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCGGG----CCEEET-----------T-----E---ECCTTSBGGGGTCCTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHC-cCHHH----EEEEEC-----------C-----e---ECCCCCcHHHcCCCCCCEEE
Confidence 44555578999999999987531 11111 133331 1 1 13568999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 81 l~~ 83 (88)
T 3dbh_I 81 LVL 83 (88)
T ss_dssp ECC
T ss_pred EEE
Confidence 764
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=73.23 E-value=9.5 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.338 Sum_probs=38.4
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-.-.+.|+.||-..|.+..- ..... .+++|- |.. .+|++||.++++.-|+-|.
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrL~~~-----------Gk~--------L~D~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEG-IPPDQ----QRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTLH 85 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCGGG----CEEEET-----------TEE--------CCTTCBTGGGTCCTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhC-CChhh----EEEEEC-----------CeE--------CCCcCcHHHCCCCCCCEEE
Confidence 44455578999999999987421 10001 134441 111 3567999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 86 l~~ 88 (91)
T 3v6c_B 86 LVL 88 (91)
T ss_dssp EEC
T ss_pred EEE
Confidence 865
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=73.22 E-value=11 Score=24.07 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=39.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|+.+|-..|.+..- ..... .+++|- |.. .+|++||.+++..-|+-|
T Consensus 16 ~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~----qrL~~~-----------G~~--------L~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 16 SSTYEVRLTQTVAHLKQQVSGLEG-VQDDL----FWLTFE-----------GKP--------LEDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHT-CCGGG----EEEEET-----------TEE--------CCTTSBGGGGTCCTTCEE
T ss_pred EEEEEECCcChHHHHHHHHHhhcC-CCHHH----EEEEEC-----------CEE--------CCCCCcHHHCCCCCCCEE
Confidence 344556678999999999976421 11111 234442 111 356799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 72 ~l~~ 75 (79)
T 3phx_B 72 FMNL 75 (79)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 17
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=72.68 E-value=7.8 Score=27.44 Aligned_cols=77 Identities=14% Similarity=0.320 Sum_probs=48.0
Q ss_pred CCCCCcccccC-CCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCC
Q 031615 55 GHHSREDFAVR-GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQ 133 (156)
Q Consensus 55 ~hh~~~dF~~~-g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~ 133 (156)
.||+-.||... ..+.-..+.|-...++|+.||-..|.+..- .... ..+++|- |..
T Consensus 3 ~~~~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~qrLi~~-----------Gk~-------- 58 (114)
T 2kdi_A 3 HHHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPD----QQRLIWA-----------GKQ-------- 58 (114)
T ss_dssp CSCCCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TEE--------
T ss_pred ccccCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC-cChH----HEEEEEC-----------CEE--------
Confidence 35566777632 112334566777789999999999987521 1111 1133332 111
Q ss_pred CCccccccccCcccCcEEEEEe
Q 031615 134 LDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 134 ~dd~kTL~d~rF~iGDyidvAI 155 (156)
.+|++||.+++..-|+.|.+.+
T Consensus 59 L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 59 LEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CCTTCBTTTTTCCSSCEEEEEE
T ss_pred CCCCCcHHHCCCCCCCEEEEEE
Confidence 2467999999999999988764
No 18
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=72.36 E-value=8.6 Score=26.75 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=39.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|+.+|-..|.+..- .....- +++|- |.+ .+|++||.++++.-|+.|
T Consensus 13 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~Q----rLi~~-----------Gk~--------L~D~~tL~~~~i~~g~~i 68 (106)
T 3m62_B 13 KVPLDLEPSNTILETKTKLAQSIS-CEESQI----KLIYS-----------GKV--------LQDSKTVSECGLKDGDQV 68 (106)
T ss_dssp EEEECCCTTSBHHHHHHHHHHTTT-SCGGGC----EEEET-----------TEE--------CCTTSBTTTTTCCTTCEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC-CChhhE----EEEEC-----------CEE--------CCCcCCHHHcCCCCCCEE
Confidence 344555678999999999988532 111111 33331 211 246799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.|.+
T Consensus 69 ~lv~ 72 (106)
T 3m62_B 69 VFMV 72 (106)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8865
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=72.29 E-value=5.5 Score=25.58 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.-.+.|+.+|-..|.+..- .... ..+++|. |.. -+|++||++++..-||.|
T Consensus 15 ~~~~~v~~~~tv~~lk~~i~~~~g-i~~~----~qrL~~~-----------G~~--------L~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 15 EIHFKVKMTTHLKKLKESYCQRQG-VPMN----SLRFLFE-----------GQR--------IADNHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHT-CCGG----GEEEEET-----------TEE--------CCTTCCHHHHTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHC-CCcc----cEEEEEC-----------CEE--------eCCCCCHHHcCCCCCCEE
Confidence 344555689999999998887421 1111 2333442 221 246699999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
++.+
T Consensus 71 ~l~~ 74 (79)
T 2uyz_B 71 EVYQ 74 (79)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9865
No 20
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.82 E-value=2.8 Score=31.79 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=34.2
Q ss_pred cCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceee---ecceEeecCCCCCCCc--cccccccCcccCcEEE
Q 031615 78 WKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVR---EVGKTFSYEGRRQLDD--GKMLAELGFEIGDYLD 152 (156)
Q Consensus 78 W~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~k---dlGsv~~g~~~~~~dd--~kTL~d~rF~iGDyid 152 (156)
|..+||.||+..|++.+- |.+ -+.+. +.|.++ .. ..|| .|||.++++..|-+|.
T Consensus 17 l~~~TL~dLV~~l~~~~g--------------y~~---eiSV~~~~~~rLLy--D~--DfDDnl~k~L~dLgv~~gsfLt 75 (127)
T 3onh_A 17 LNKMKLSDFVVLIREKYS--------------YPQ---DISLLDASNQRLLF--DY--DFEDLNDRTLSEINLGNGSIIL 75 (127)
T ss_dssp HHHCBHHHHHHHHHHHHT--------------CCS---SEEEEETTTTEEEE--ET--TBCTTTTSBTTTTTCCTTCEEE
T ss_pred ccccCHHHHHHHHHHhcC--------------CCC---cEEEEecCCCCeEe--CC--CccccccCcHHHcCcCCCcEEE
Confidence 567999999999887521 110 11111 111111 11 1355 5999999999999998
Q ss_pred EE
Q 031615 153 VA 154 (156)
Q Consensus 153 vA 154 (156)
|.
T Consensus 76 v~ 77 (127)
T 3onh_A 76 FS 77 (127)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 21
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=70.79 E-value=12 Score=25.76 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=39.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.+|+.|.....+..--... +++|+|- |.- -.++.|+.++..+-||-|
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~-----~~rf~fd-----------G~~--------l~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQGLSMR-----QIRFRFD-----------GQP--------INETDTPAQLEMEDEDTI 84 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHTCCGG-----GEEEEET-----------TEE--------CCTTCCTTTTTCCTTEEE
T ss_pred EEEEEEccCCHHHHHHHHHHHHhCCCcc-----ceEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEE
Confidence 5666666888999998877764221111 3344433 222 245689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|.+
T Consensus 85 dv~~ 88 (93)
T 2d07_B 85 DVFQ 88 (93)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9975
No 22
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=68.82 E-value=13 Score=27.33 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=35.8
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCC---ceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 77 TWKDATLRELTDLVKEVAPAARRRD---ARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 77 TW~DaTLrEL~~Llk~~~p~ar~~g---trlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.-.+.|..+|-..|.+..|..-+-| .-=..++||. |+- .+|++||.++++..||.+.+
T Consensus 34 v~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~----------------GK~---LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 34 FSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ----------------GRF---LHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp ECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS----------------SSE---EESSCBTGGGCCCTTSEEEE
T ss_pred eCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC----------------CcC---CCCCCcHHHcCCCCCCceEE
Confidence 3468999999999998655420000 0112344443 221 24668999999988887544
Q ss_pred E
Q 031615 154 A 154 (156)
Q Consensus 154 A 154 (156)
-
T Consensus 95 h 95 (125)
T 2gow_A 95 H 95 (125)
T ss_dssp E
T ss_pred E
Confidence 3
No 23
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=67.49 E-value=12 Score=24.80 Aligned_cols=61 Identities=15% Similarity=0.319 Sum_probs=40.7
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcE
Q 031615 71 DEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDY 150 (156)
Q Consensus 71 ~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDy 150 (156)
..+.|-...++|+.||-..|.+..- .... ..+++|. |.+ .+|++||.+++..-|+-
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~qrL~~~-----------Gk~--------L~D~~tL~~~gi~~g~~ 75 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEG-IPPD----QQRLIFA-----------GKQ--------LEDGRTLSDYNIQKEST 75 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHC-CCGG----GCEEEET-----------TEE--------CCTTSBSGGGTCCTTCE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHC-cChh----hEEEEEC-----------CEE--------CCCCCcHHHcCCCCCCE
Confidence 3566777889999999999987521 1111 1233442 211 24679999999999999
Q ss_pred EEEEe
Q 031615 151 LDVAI 155 (156)
Q Consensus 151 idvAI 155 (156)
|.+.+
T Consensus 76 i~l~~ 80 (88)
T 1sif_A 76 LHLVL 80 (88)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88754
No 24
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=66.92 E-value=10 Score=25.46 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeec
Q 031615 43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREV 122 (156)
Q Consensus 43 cPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdl 122 (156)
.+++||+-.+.|.+ +++ ++ .++|+.||-..|.+..+-..... . ||-.... .++
T Consensus 3 ~~m~lRvrs~~G~~-Ri~-------v~---------~~~t~~~L~~~I~~~~~i~~~~~-----~-l~~~~~p---~~~- 55 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK-RIT-------AT---------KRETAATFLKKVAKEFGFQNNGF-----S-VYINRNK---TGE- 55 (80)
T ss_dssp CCCCCEEECSSEEE-ECC-------CC---------SSCCHHHHHHHHHHHTCCCTTTC-----C-CCCSCCG---GGG-
T ss_pred CcEEEEEECCCCCE-EEE-------cC---------CcChHHHHHHHHHHHcCCCCCcc-----e-EEecCCC---CCc-
Confidence 46899999988754 332 12 46899999999999876432111 1 1111111 011
Q ss_pred ceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 123 GKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 123 Gsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
+. .++++||+++++.-||.|-|.
T Consensus 56 --l~-------~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 56 --IT-------ASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp --SS-------SCCCCTTTTTCCCTTCCEEC-
T ss_pred --cc-------CCCCCCHHHcCCCCCCEEEEe
Confidence 11 125689999999999988653
No 25
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=66.44 E-value=19 Score=25.15 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=36.4
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCc-ccCcEEEEE
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGF-EIGDYLDVA 154 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF-~iGDyidvA 154 (156)
-.-.+.|..+|=..|.+.........- ++||- |.+ .+|++||.+++. +-|+.|.|-
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~Q----rLi~~-----------Gk~--------L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEI----KLLLK-----------GKV--------LHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGE----EEEET-----------TEE--------ECTTCBGGGSCCBTTBCEEEEE
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhE----EEEEC-----------CEE--------CcCcCCHHHcCcCCCCCEEEEE
Confidence 334889999999998443322211112 23331 222 256799999999 999999886
Q ss_pred e
Q 031615 155 I 155 (156)
Q Consensus 155 I 155 (156)
|
T Consensus 94 v 94 (98)
T 4a20_A 94 I 94 (98)
T ss_dssp E
T ss_pred E
Confidence 5
No 26
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.21 E-value=12 Score=24.99 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=35.2
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
-.-.+.|+.||-..|.+.. ... .+++|- |.+ . .|+++||.+++..-|+.|.|.+
T Consensus 23 ~v~~~~TV~~LK~~i~~~~----~~~----qrLi~~-----------Gk~------L-~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 23 VARPEDTVGTLKSKYFPGQ----ESQ----MKLIYQ-----------GRL------L-QDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp EECSSSBHHHHHHHHSSST----TTT----CEEEET-----------TEE------C-CCSSCBTTTTTCCTTEEEEEEC
T ss_pred EECCCCcHHHHHHHHHhhC----cCc----EEEEEC-----------CEE------c-cCCcCCHHHcCCCCCCEEEEEE
Confidence 3447889999999888754 111 223332 211 1 2444999999999999988754
No 27
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=64.27 E-value=20 Score=24.55 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=38.3
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.||-..|.+..- .... ..+++|- |.+ .+|++||.+++..-|+.|.
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~qrLi~~-----------Gk~--------L~D~~tL~~~gI~~g~~I~ 92 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFK-SHTD----QLVLIFA-----------GKI--------LKDQDTLSQHGIHDGLTVH 92 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHT-CCGG----GEEEEET-----------TEE--------ECTTCCTGGGTCCTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHC-cChh----hEEEEEC-----------CEE--------CCCcCcHHHcCCCCCCEEE
Confidence 34445678999999999987421 1111 1334442 221 2467999999999999988
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 93 l~~ 95 (101)
T 2klc_A 93 LVI 95 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 28
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=64.06 E-value=21 Score=23.90 Aligned_cols=59 Identities=14% Similarity=0.334 Sum_probs=38.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.||-..|.+..- .... ..+++|- |.. .+|++||.+++..-|+-|.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~g-i~~~----~qrL~~~-----------Gk~--------L~D~~tL~~~gi~~g~~i~ 68 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEG-IPPD----QQRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTLH 68 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTC-CCGG----GEEEEET-----------TEE--------CCTTSBTGGGTCCTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHC-cChh----hEEEEEC-----------CEE--------CCCCCCHHHcCCCCCCEEE
Confidence 34445578999999999987531 1111 2334442 111 2467999999999999988
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 69 l~~ 71 (98)
T 1yx5_B 69 LVL 71 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.90 E-value=18 Score=23.40 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=37.7
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 74 QIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 74 QIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.|-...++|+.||-..|.+..- ..... .+++|- |.. .+|++||.+++..-|+-|.+
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~g-i~~~~----qrL~~~-----------Gk~--------L~d~~tL~~~~i~~g~~i~l 76 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQG-LPKKQ----QQLEFQ-----------GQV--------LQDWLGLGIYGIQDSDTLIL 76 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTC-CCTTT----EEEEET-----------TEE--------CCSSSBHHHHTCCTTEEEEE
T ss_pred EEEeCCCChHHHHHHHHHHHhC-CChHH----EEEEEC-----------CEE--------ccCCCCHHHCCCCCCCEEEE
Confidence 3444578999999999987531 11111 233342 111 25679999999999999887
Q ss_pred Ee
Q 031615 154 AI 155 (156)
Q Consensus 154 AI 155 (156)
.+
T Consensus 77 ~~ 78 (87)
T 1wh3_A 77 SK 78 (87)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 30
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.39 E-value=21 Score=25.89 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=37.4
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCC---ceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 77 TWKDATLRELTDLVKEVAPAARRRD---ARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 77 TW~DaTLrEL~~Llk~~~p~ar~~g---trlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.-.+.|..+|-..|.+..|..-+-+ .-=..+|||. |.+ .+|++||.++++..|+.+.|
T Consensus 33 v~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~-----------GK~--------LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 33 FSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ-----------GRF--------LHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp ECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET-----------TEE--------ECSSCBTTTTTCCSSCEEEE
T ss_pred ECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC-----------CcC--------CCCCCcHHHcCCCCCCceEE
Confidence 3467899999999998655320000 0112344443 332 25779999999999998655
Q ss_pred Ee
Q 031615 154 AI 155 (156)
Q Consensus 154 AI 155 (156)
.+
T Consensus 94 hL 95 (116)
T 1wgh_A 94 HL 95 (116)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 31
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=62.19 E-value=11 Score=25.14 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
.+.||++|-..|... . .....|.+..-|| .|.+. ..|.++||+|+++..+.-|-|-
T Consensus 26 ~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fP-------rk~l~---------~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 26 ASNKLQIVFDFVASK-G---FPWDEYKLLSTFP-------RRDVT---------QLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp TTSBHHHHHHHHHHT-T---CCTTTEEEECSSS-------CCBGG---------GSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCCHHHHHHHHHHc-C---CCCCCeEEEeCCC-------CCCCc---------CCCCCCCHHHCCCCCCCEEEEE
Confidence 577999999999873 2 1234444443354 12221 1356799999999998887663
No 32
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=61.86 E-value=12 Score=25.50 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCcEEEEEeccCCCCCCcccccCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeec
Q 031615 43 CPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREV 122 (156)
Q Consensus 43 cPFLLRvF~~~g~hh~~~dF~~~g~lP~~ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdl 122 (156)
.+-.+.+|++.-. | .++.+-.-.+.|+.+|-..|.+..- .... ..+|+|.
T Consensus 18 ~~~~m~I~Vk~~~----------g----~~~~l~v~~~~tv~~lK~~i~~~~g-ip~~----~qrLif~----------- 67 (97)
T 1wyw_B 18 EGEYIKLKVIGQD----------S----SEIHFKVKMTTHLKKLKESYCQRQG-VPMN----SLRFLFE----------- 67 (97)
T ss_dssp -CCEEEEEEECTT----------C----CEEEEEEETTSCTHHHHHHHHHHHT-CCGG----GEEEEET-----------
T ss_pred CCCcEEEEEEeCC----------C----CEEEEEECCCCcHHHHHHHHHHHHC-CChh----hEEEEEC-----------
Confidence 3445888887411 1 1344445578999999999887421 1011 2344443
Q ss_pred ceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 123 GKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 123 Gsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
|.. .+|++||.+++.+-||.|.+.+
T Consensus 68 Gk~--------L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 68 GQR--------IADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp TEE--------CCTTCCHHHHTCCTTCEEEEEE
T ss_pred CeE--------cCCCCCHHHCCCCCCCEEEEEE
Confidence 221 2467999999999999999865
No 33
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.28 E-value=11 Score=25.14 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=37.2
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.||-..|.+..- .....-|| +|- |.. .+|++||.+++..-|+.|.
T Consensus 29 ~~~~v~~~~TV~~LK~~I~~~~g-ip~~~qrL----~~~-----------Gk~--------L~D~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 29 HEFFLAENSNVRRFKKQISKYLH-CNADRLVL----IFT-----------GKI--------LRDQDILSQRGILDGSTVH 84 (96)
T ss_dssp EEEEEETTCCHHHHHHHHHHHTC-SCTTTBCC----EET-----------TEE--------CCTTSCHHHHTCCTTEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhC-CCHHHEEE----EEC-----------CEE--------CCCcCCHHHCCCCCCCEEE
Confidence 34445688999999999988531 11111122 221 211 2567999999999999887
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 85 l~~ 87 (96)
T 1wx8_A 85 VVV 87 (96)
T ss_dssp CCB
T ss_pred EEE
Confidence 643
No 34
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=60.13 E-value=12 Score=25.48 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
++.|+.+|=..|.+..- ..... -+++|-|..+.|. |.. .+|++||.+.+.+-|.-|-+
T Consensus 23 ~s~TI~~lK~ki~~~~G-ip~~~----QrLi~~~~~~~~~---------g~~---l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 23 LAQTIESIKENVFTHFA-TPPEY----MQLQLIDDRGITI---------EKN---MANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp TTSBHHHHHHHHHTTSC-CCGGG----EEEEEECTTSCEE---------ESS---CCTTSBGGGGTCCTTCEEEE
T ss_pred ccCcHHHHHHHHHHHHC-CCHHH----EEEEEecCCCCce---------eeE---cCCCCCHHHCCCCCCCEEEE
Confidence 67899999888876421 11111 2467777776653 221 46789999999999988755
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=58.48 E-value=26 Score=24.44 Aligned_cols=59 Identities=14% Similarity=0.334 Sum_probs=38.8
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.+|-..|.+..- .... ..+++|- |.. .+|++||.++++.-|+-|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~QrLi~~-----------Gk~--------L~D~~tL~~~gI~~gs~I~ 103 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEG-IPPD----QQRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TEE--------CCTTSBTTTTTCCTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhC-CChH----HEEEEEC-----------CEE--------CCCCCcHHHCCCCCCCEEE
Confidence 44445678999999999987521 1111 1244442 111 3567999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 104 l~~ 106 (111)
T 3vdz_A 104 LVL 106 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 36
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.70 E-value=25 Score=25.00 Aligned_cols=60 Identities=25% Similarity=0.129 Sum_probs=40.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|..||-..|.+..- .... ..++||- |.+ .+|.+||.+.+.+-|..|
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~g-ip~~----qQrLI~~-----------GKi--------L~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFG-LQEN----YIKIVIN-----------KKQ--------LQLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTT-CCST----TCEEEET-----------TEE--------CCTTSBHHHHTCCSSEEE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHC-cCHH----HeEEEeC-----------CeE--------CCCCCcHHHcCCCCCCEE
Confidence 567778899999999999988532 1111 1133333 322 356799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.|-+
T Consensus 87 ~vl~ 90 (100)
T 1wju_A 87 MVLE 90 (100)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6543
No 37
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=57.41 E-value=34 Score=23.69 Aligned_cols=59 Identities=14% Similarity=0.334 Sum_probs=38.4
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.+-...++|+.+|-..|.+..- .... ..+++|- |.. .+|++||.+++..-|+-|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~qrLi~~-----------Gk~--------L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEG-IPPD----QQRLIFA-----------GKQ--------LEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCTT----TEEEEET-----------TEE--------CCSSCBTTTTTCCTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHC-cCcc----cEEEEEC-----------CEE--------CCCCCcHHHcCCCCCCEEE
Confidence 34445578999999999987521 1111 1233442 211 2467999999999999988
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 104 l~~ 106 (111)
T 2ojr_A 104 LVL 106 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 38
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.66 E-value=20 Score=24.67 Aligned_cols=58 Identities=12% Similarity=0.301 Sum_probs=36.6
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 74 QIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 74 QIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.|-...+.|+.+|-..|.+..- .....-| ++|- | + ..+|++||.+++++-|+-|.+
T Consensus 41 ~l~v~~~~TV~~LK~~I~~~~g-ip~~~Qr----Li~~-----------G-----k---~L~D~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 41 EVNVAPESTVLQFKEAINKANG-IPVANQR----LIYS-----------G-----K---ILKDDQTVESYHIQDGHSVHL 96 (101)
T ss_dssp CBCCCTTSBHHHHHHHHHHHHS-CCSTTCC----EEET-----------T-----E---ECCTTSBTTTTTCCTTEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHC-cChHHEE----EEEC-----------C-----E---ECCCcCcHHHCCCCCCCEEEE
Confidence 3344578899999999987531 1111112 2221 1 1 135689999999999999887
Q ss_pred Ee
Q 031615 154 AI 155 (156)
Q Consensus 154 AI 155 (156)
.+
T Consensus 97 v~ 98 (101)
T 3m63_B 97 VK 98 (101)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 39
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.30 E-value=37 Score=21.94 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 77 TWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 77 TW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
...+.|+.||-..|.+..- .... ..+++|- |.. .+|++||.+++..-|+.|.+.+
T Consensus 26 v~~~~tV~~lK~~i~~~~g-ip~~----~qrL~~~-----------gk~--------L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFD-VRPE----CQRLFYR-----------GKQ--------LENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSC-CCTT----TEEEEET-----------TEE--------CCSSSBHHHHTCCTTCEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHC-cChh----hEEEEEC-----------CeE--------CCCCCCHHHCCCCCCCEEEEEE
Confidence 4578999999999987531 1111 1233442 111 2567999999999999988764
No 40
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=54.43 E-value=9.3 Score=23.73 Aligned_cols=59 Identities=14% Similarity=0.332 Sum_probs=38.8
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.+-...++|+.||-..|.+..- ... . ..+++|. |.. .+|++||.++++.-|+-|.
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~-i~~--~--~q~L~~~-----------g~~--------L~d~~tL~~~~i~~g~~i~ 68 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEG-IPP--D--QQRLIFA-----------GKQ--------LEDGRTLSDYNIQRESTLH 68 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHC-CCG--G--GEEEEET-----------TEE--------CCTTCBTGGGTCCTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHC-cCH--H--HeEEEEC-----------CeE--------CCCCCcHHHcCCCCCCEEE
Confidence 34445578999999999987531 111 1 2344442 211 2467999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 69 l~~ 71 (76)
T 3a9j_A 69 LVL 71 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 41
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=53.44 E-value=40 Score=23.07 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=39.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.+|+.|.....+..--. .. +++|+|- |.- -.++.|.+++..+-||-|
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~-~~----~~rf~Fd-----------G~~--------l~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLS-MR----QIRFRFD-----------GQP--------INETDTPAQLEMEDEDTI 72 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCC-ST----TEEEEET-----------TEE--------CCTTCCTTTTTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCC-cc----cEEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEE
Confidence 56666678899998888777642111 11 2233332 322 245689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 73 dv~~ 76 (91)
T 2io0_B 73 DVFQ 76 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9965
No 42
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=52.98 E-value=30 Score=24.38 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=40.6
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.+-.=+++|+.+|...-.+ ++.....-+++++|- |.- -+++.|++|+...-||-|
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~----~~~I~~~~~IrllFD-----------GdR--------Ldp~~tp~DlemeD~D~I 77 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCT----EVKISFHERIRLEFE-----------GEW--------LDPNDQVQSTELEDEDQV 77 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHH----HHTCCCCTTCEEEET-----------TEE--------CCTTSBGGGSSCCTTCEE
T ss_pred CeEEEecCCCCHHHHHHHHHH----HcCCCcCceEEEEEc-----------Ccc--------cCccCChhhhCCcCCcee
Confidence 566666688999988876554 333333223344332 221 367899999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
||-|
T Consensus 78 DvmL 81 (82)
T 3goe_A 78 SVVL 81 (82)
T ss_dssp EEEC
T ss_pred eeee
Confidence 9965
No 43
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.98 E-value=25 Score=24.30 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=35.8
Q ss_pred CC-CCHHHHHHHHHhhCcc-ccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 79 KD-ATLRELTDLVKEVAPA-ARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 79 ~D-aTLrEL~~Llk~~~p~-ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
.+ .|+.+|-..|.+..|+ ..... -.+++|- |.+ .+|++||.+++..-|+.|.+.+
T Consensus 42 ~~~~TV~~LK~~i~~~~~~gip~~~---~qrLi~~-----------Gk~--------L~D~~tL~~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 42 LGGYSISFLKQLIAGKLQESVPDPE---LIDLIYC-----------GRK--------LKDDQTLDFYGIQPGSTVHVLR 98 (107)
T ss_dssp CCCCBHHHHHHHHHHHCTTTCCCSS---SEEEEET-----------TEE--------CCTTCBHHHHTCCTTCEEEEEE
T ss_pred cccCCHHHHHHHHHHHhccCCChhh---cEEEEEC-----------CeE--------CCCCCcHHHcCCCCCCEEEEEe
Confidence 54 8999999999987642 21111 0222332 211 2466999999999999988754
No 44
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.87 E-value=45 Score=22.52 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=38.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCcc-ccccccCcccCcE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDG-KMLAELGFEIGDY 150 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~-kTL~d~rF~iGDy 150 (156)
.+.|-...+.|+.+|-..|.+.. ......- +++|. |.+ .+|+ +||.+++..-|+.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~-gip~~~Q----rLi~~-----------Gk~--------L~D~~~tL~~ygI~~gst 81 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVE-NTPIKRM----QLYYS-----------GIE--------LADDYRNLNEYGITEFSE 81 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHS-SSCTTTE----EEEET-----------TEE--------ECCTTSBHHHHTCCTTEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHH-CcCHHHE----EEEEC-----------CEE--------CCCCcccHHHCCCCCCCE
Confidence 45555668899999999998853 1111112 23332 221 2345 9999999999998
Q ss_pred EEEEe
Q 031615 151 LDVAI 155 (156)
Q Consensus 151 idvAI 155 (156)
|.+.+
T Consensus 82 l~lv~ 86 (94)
T 2kan_A 82 IVVFL 86 (94)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87754
No 45
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=50.66 E-value=12 Score=23.23 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=38.2
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.+-...++|+.||-..|.+..- .... ..+++|- |.. .+|++||.+++..-|+-|.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~-i~~~----~q~L~~~-----------g~~--------L~d~~tL~~~~i~~g~~i~ 68 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEG-IPPQ----QQRLIYS-----------GKQ--------MNDEKTAADYKILGGSVLH 68 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TEE--------CCTTSBGGGGTCCTTCEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHC-cChH----HEEEEEC-----------CEE--------CCCCCcHHHcCCCCCCEEE
Confidence 33444578999999999987521 1111 1334442 111 2467999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 69 l~~ 71 (76)
T 1ndd_A 69 LVL 71 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 46
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.24 E-value=24 Score=24.09 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=37.8
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...++|+.||-..|.+..- .....-+ ++|- | |.| .||.+||.++++.-|+.|.
T Consensus 24 ~~i~v~~~~TV~~LK~~I~~~~g-ip~~~qr----L~~~---g----k~L-----------~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 24 FSLQVNPDFELSNFRVLCELESG-VPAEEAQ----IVYM---E----QLL-----------TDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTC-CCGGGBC----EEET---T----EEE-----------CCSSSBHHHHTCCTTEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHC-cChHHeE----EEEC---C----EEC-----------CCCcccHHHCCCCCCCEEE
Confidence 34455678999999999987532 1111112 2332 1 111 3566999999999999987
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+..
T Consensus 81 l~~ 83 (102)
T 1v5o_A 81 LLQ 83 (102)
T ss_dssp ECB
T ss_pred EEE
Confidence 753
No 47
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=48.82 E-value=39 Score=21.95 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=36.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.+|-..|.+..- ..... .+++|- |.+ .+|++||.++++ -|+-|.
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~g-ip~~~----qrLi~~-----------Gk~--------L~d~~tL~~~~i-~g~~i~ 72 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVS-IPSEK----QRLIYQ-----------GRV--------LQDDKKLQEYNV-GGKVIH 72 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHT-CCGGG----EEEEET-----------TEE--------CCTTSBGGGGTC-TTEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhC-CCHHH----EEEEEC-----------CeE--------CCCCCCHHHcCC-CCcEEE
Confidence 34444578899999999987521 11001 244441 111 256799999999 698887
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 73 l~~ 75 (90)
T 4dwf_A 73 LVE 75 (90)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 48
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=48.15 E-value=38 Score=22.27 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=38.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+..=++.+|+.|.....+..- .... +++|+|- |.- -.++.|.+++..+-||-|
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~g-i~~~----~~rf~fd-----------G~~--------l~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMG-LSGH----KLSFFFD-----------GTK--------LSGKELPADLGLESGDLI 75 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT-CTTC----CCEEEET-----------TEE--------CCSCCCHHHHTCCTTCEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhC-CCcc----cEEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEE
Confidence 466666788999999887776421 1111 2333332 222 245689999999999999
Q ss_pred EE
Q 031615 152 DV 153 (156)
Q Consensus 152 dv 153 (156)
+|
T Consensus 76 dv 77 (79)
T 3a4r_A 76 EV 77 (79)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 49
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.13 E-value=42 Score=22.98 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=36.7
Q ss_pred eeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 75 IYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 75 IYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
|-...+.|+.+|-..|.+..- .....- +++|. |.. .+|++||.++++.-|+-|.|.
T Consensus 38 l~v~~~~TV~~LK~~I~~~~g-ip~~~q----rLi~~-----------Gk~--------L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 38 LVVRSTDTVFHMKRRLHAAEG-VEPGSQ----RWFFS-----------GRP--------LTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp EEECTTSHHHHHHHHHHHTTC-CCSTTC----EEEET-----------TEE--------CCTTSHHHHCCCSSSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHHC-cCcccE----EEEEC-----------CEE--------CCCCCcHHHcCCCCCCEEEEE
Confidence 444578899999999987421 111111 23331 211 356799999999999998875
Q ss_pred e
Q 031615 155 I 155 (156)
Q Consensus 155 I 155 (156)
+
T Consensus 94 ~ 94 (106)
T 1ttn_A 94 V 94 (106)
T ss_dssp C
T ss_pred E
Confidence 4
No 50
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=46.03 E-value=39 Score=24.09 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=38.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++++-.=++.+|+-|.....+..--. . . +++|+|- |.- -.++.|.+++..+-||-|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~--~-~--~~rF~Fd-----------G~r--------l~~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKE--M-D--SLRFLYD-----------GIR--------IQADQTPEDLDMEDNDII 97 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCC--G-G--GEEEEET-----------TEE--------CCTTCCTTTTTCCTTEEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCC--c-c--cEEEEEC-----------CeE--------cCCCCCHHHcCCCCCCEE
Confidence 55556667888888888776632111 1 1 3444442 222 245689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 98 dv~~ 101 (106)
T 2eke_C 98 EAHR 101 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9965
No 51
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=45.81 E-value=31 Score=22.71 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=37.0
Q ss_pred eeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 75 IYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 75 IYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
|-...++|+.+|-..|.+..- ..... .+++|. |+ ..+|++||.++++.-|+.|.+.
T Consensus 19 ~~v~~~~TV~~LK~~I~~~~g-ip~~~----qrL~~~----------------Gk---~L~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 19 YEVRLTQTVAHLKQQVSGLEG-VQDDL----FWLTFE----------------GK---PLEDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEESSSBHHHHHHHHHHHTC-SCTTT----EEEESS----------------SS---CCCTTSBHHHHHCSTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHhC-CChhH----EEEEEC----------------CE---ECCCCCcHHHcCCCCCCEEEEE
Confidence 344578999999999987521 11111 233332 11 1356799999999999998876
Q ss_pred e
Q 031615 155 I 155 (156)
Q Consensus 155 I 155 (156)
+
T Consensus 75 ~ 75 (88)
T 2hj8_A 75 L 75 (88)
T ss_dssp E
T ss_pred E
Confidence 4
No 52
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.29 E-value=47 Score=22.35 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=34.9
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
-...++|+.||=..|.+..+......-|| +|. . .|...+|++||.+++..-|+.|-+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL----~~~----------------~-~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSL----RLD----------------P-KGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCE----ESS----------------T-TSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEE----Eec----------------C-CCcCcCCCCCHHHcCCCCCCEEEE
Confidence 34679999999999988533211111111 221 1 111146789999999998887654
No 53
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=43.24 E-value=52 Score=22.78 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=36.8
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccC-CCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCcccccccc--CcccCcE
Q 031615 74 QIYTWKDATLRELTDLVKEVAPAARR-RDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAEL--GFEIGDY 150 (156)
Q Consensus 74 QIYTW~DaTLrEL~~Llk~~~p~ar~-~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~--rF~iGDy 150 (156)
.|-.-.+.|..+|=..|.+..+.... ..=|| ||- |.+ .+|++||.++ +++-|+.
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL----Iy~-----------Gk~--------L~D~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL----VYS-----------GRL--------LPDHLQLKDILRKQDEYHM 95 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE----EET-----------TEE--------ECTTSBTHHHHTTTCSEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE----EEC-----------CEE--------CCCCCCHHHHhcCCCCCCE
Confidence 33345789999999999986543321 22233 332 222 2467999999 9988887
Q ss_pred EEE
Q 031615 151 LDV 153 (156)
Q Consensus 151 idv 153 (156)
|.+
T Consensus 96 ihL 98 (99)
T 2kdb_A 96 VHL 98 (99)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=43.12 E-value=17 Score=22.98 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=36.0
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 77 TWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 77 TW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
...+.|+.+|-..|.+..- .... ..+++|. |.. .+|++||.+++..-|+-|.+.+
T Consensus 21 v~~~~tv~~lK~~i~~~~g-ip~~----~qrL~~~-----------g~~--------L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 21 LSRLTKVEELRRKIQELFH-VEPG----LQRLFYR-----------GKQ--------MEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp ECTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TEE--------CCTTCBTTTTTCCTTCEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHC-cChh----hEEEEEC-----------CEE--------CCCCCCHHHcCCCCCCEEEEEE
Confidence 4578999999999887521 1111 1233442 111 2567999999999999988764
No 55
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.83 E-value=68 Score=21.13 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=37.8
Q ss_pred eeeeecCCCCHHHHHHHHHhhCcc-ccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCcccccccc--CcccCc
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPA-ARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAEL--GFEIGD 149 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~-ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~--rF~iGD 149 (156)
+.|-.-.++|..||=..|.+..|. .....=|| +|. |.+ .+|++||.++ +..-|+
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrL----i~~-----------Gk~--------L~D~~tL~~~~~~i~~~~ 78 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRL----IYS-----------GKL--------LLDHQCLRDLLPKQEKRH 78 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEE----EET-----------TEE--------CCSSSCHHHHSCSSSCSE
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEE----EEC-----------CEE--------CcCcCCHHHHhcCCCCCC
Confidence 333334789999999999997642 22222233 221 221 2466899999 888888
Q ss_pred EEEEEe
Q 031615 150 YLDVAI 155 (156)
Q Consensus 150 yidvAI 155 (156)
.|.+.+
T Consensus 79 ~i~lv~ 84 (93)
T 1wgd_A 79 VLHLVC 84 (93)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 877643
No 56
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=42.25 E-value=37 Score=23.35 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
..-|+++|...|.+++.-.-.+..-++.+.+.. |.+. .++.+|.|....-||.|.|
T Consensus 25 ~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK-----------~~~L--------~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 25 DYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNK-----------DKVF--------SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGG-----------TEEE--------ETTSBTGGGTCCTTCEEEE
T ss_pred CchhHHHHHHHHHHHhCCCcCCCCCCEEEEecC-----------CEEE--------cCCCEEeeCCcCCCCEEEE
Confidence 567899999999998664322222245554322 3333 3568999999999999875
No 57
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=41.01 E-value=20 Score=22.39 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=36.2
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
-...++|+.||-..|.+..- .... ..+++|. |.. .+|++||.+++..-|+-|.+..
T Consensus 19 ~v~~~~tV~~LK~~i~~~~~-i~~~----~qrL~~~-----------gk~--------L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 19 NVAPESTVLQFKEAINKANG-IPVA----NQRLIYS-----------GKI--------LKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EECTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TEE--------CCTTSBTGGGTCCTTCEEEEEE
T ss_pred EECCCCcHHHHHHHHHHHhC-CCHH----HEEEEEC-----------CeE--------cCCCCCHHHcCCCCCCEEEEEE
Confidence 34578999999999987421 1111 1234442 111 2456999999999999987753
No 58
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.02 E-value=38 Score=23.89 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=38.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.+|..|.....+..--. .. +++|+| -|.. -.++.|+.++..+-||-|
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~-~~----~~rf~F----------------dG~~---l~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLS-MR----QIRFRF----------------DGQP---INETDTPAQLEMEDEDTI 91 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCC-TT----TSCEES----------------SSSB---CCTTSCTTTTTCCTTEEE
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCC-cc----eEEEEE----------------CCEE---cCCCCCHHHcCCCCCCEE
Confidence 45555667889999988777642111 11 122222 2221 346699999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 92 dv~~ 95 (104)
T 1wz0_A 92 DVFQ 95 (104)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9864
No 59
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.81 E-value=19 Score=24.84 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=39.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.||..|...+.+..--.. . +++|+|- |.- -+++.|++++..+-||-|
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~---~--~~rf~Fd-----------G~~--------l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSM---R--QIRFRFD-----------GQP--------INETDTPAQLEMEDEDTI 74 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCG---G--GEEEEET-----------TEE--------CCTTCCTTTTTCCTTCEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCc---c--cEEEEEC-----------CEE--------cCCCCCHHHcCCCCCCEE
Confidence 566666688999888887776422111 1 2333332 222 246689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 75 dv~~ 78 (94)
T 2io1_B 75 DVFQ 78 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9865
No 60
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=39.26 E-value=18 Score=23.40 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=38.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.+|..|.....+..- .....-||.|. |.- -.++.|.+++..+-||-|
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~g-i~~~~~rf~fd---------------G~~--------l~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQG-LSMRQIRFRFD---------------GQP--------INETDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHT-CCTTTCEEEET---------------TEE--------CCTTCCTTTTTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhC-CCcceEEEEEC---------------CEE--------cCCCCCHHHcCCCCCCEE
Confidence 566677788999888887776321 11122233221 222 245689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 69 dv~~ 72 (72)
T 1wm3_A 69 DVFQ 72 (72)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9854
No 61
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=35.63 E-value=84 Score=20.17 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=35.7
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.+|-..|.+..- ..... .+++|- | .+ .+|++||.++++ -|+-|.
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~g-ip~~~----qrLi~~---G--------k~--------L~D~~tL~~~~i-~g~~i~ 84 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVS-IPSEK----QRLIYQ---G--------RV--------LQDDKKLQEYNV-GGKVIH 84 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHT-CCGGG----EEEEET---T--------EE--------CCTTSBGGGGTC-TTEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhC-CCHHH----EEEEEC---C--------EE--------CCCCCcHHHcCC-CCcEEE
Confidence 34445578999999999987521 11111 134441 1 11 356799999999 698887
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 85 lv~ 87 (88)
T 4eew_A 85 LVE 87 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.52 E-value=92 Score=20.33 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 80 DATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 80 DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
++|+.||-..|.+.. ......-|+ +|- |.+. .|+++||.+++..-|+.|.+.
T Consensus 31 ~~TV~~LK~~i~~~~-gip~~~qrL----~~~-----------Gk~L-------~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVI-GVPQSFQKL----IFK-----------GKSL-------KEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SCBHHHHHHHHHHHT-CCCTTTCEE----EET-----------TEEE-------CCSSSBHHHHTCCSSEEEEEE
T ss_pred cCcHHHHHHHHHHHH-CcCHHHEEE----EEC-----------Ceec-------CCCcccHHHCCCCCCCEEEEE
Confidence 589999999998753 111222222 232 2221 356789999999999988764
No 63
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=34.63 E-value=85 Score=21.15 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCc-ccCcEEEEEe
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGF-EIGDYLDVAI 155 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF-~iGDyidvAI 155 (156)
.+.|..+|=..|.+.........-|| ||- |.+ .+|++||.+++. .-|.-|.|.+
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~QrL----i~~-----------Gk~--------L~D~~tL~~y~I~~~~stl~v~~ 76 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEIKL----LLK-----------GKV--------LHDNLFLSDLKVTPANSTITVMI 76 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTEEE----EET-----------TEE--------CCTTCBHHHHCCCGGGCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhcCCChHHEEE----EEC-----------CEE--------CcCcCCHHHcCCCCCCCEEEEEc
Confidence 67899999998833323222222233 331 221 356799999999 6788888765
No 64
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.23 E-value=33 Score=23.11 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCC-CCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKN-GRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~-gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
.+.|+.+|-.+|....- .... ..++.|-|.. +. .++ .. .+|.+||.+....-||-|-|..
T Consensus 31 ~~~TV~~LK~~i~~~~g-ip~~----~q~L~~~~~~~~~-------~~~----~L-~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 31 DSMTVQKVKGLLSRLLK-VPVS----ELLLSYESSKMPG-------REI----EL-ENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp TTSBHHHHHHHHHTTTT-CCTT----TCEEEEECTTSCS-------CEE----EC-CCSSSBSGGGTCCTTCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHC-CChh----HeEEEEEcCCCCc-------eee----cc-CCCcccHhhcCCCCCCEEEEEe
Confidence 78999999999987542 1112 2334455432 11 001 01 4788999999999999998754
No 65
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.56 E-value=18 Score=24.11 Aligned_cols=61 Identities=7% Similarity=0.053 Sum_probs=39.7
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|+.||-..|.+..- .... ..+++|. |.+. .+|++||.+++..-|+.|
T Consensus 22 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~QrLi~~-----------Gk~l-------L~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 22 SFELEVDYRDTLLVVKQKIERSQH-IPVS----KQTLIVD-----------GIVI-------LREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHT-CCGG----GEEEEET-----------TEEC-------CCSSSBHHHHTCCTTSCE
T ss_pred EEEEEECCCChHHHHHHHHHHHHC-cChH----HEEEEEC-----------CEEe-------cCCcCCHHHcCCCCCCEE
Confidence 455666789999999999987521 1111 1233442 2210 256799999999999998
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 79 ~lv~ 82 (84)
T 2kk8_A 79 QLEV 82 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 66
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=31.08 E-value=20 Score=24.08 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=35.6
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 77 TWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 77 TW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
...+.|+.||-..|.+..- ..... .+++|. |.. .+|++||.+++..-|+.|.+.+
T Consensus 34 v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~-----------Gk~--------L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 34 VTGQETVAQIKAHVASLEG-IAPED----QVVLLA-----------GAP--------LEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp CCSSCBHHHHHHHHHHHHT-CCGGG----CEEEET-----------TEE--------CCTTSBHHHHTCCSSCEEEEEC
T ss_pred eCCCCcHHHHHHHHHHHhC-cChhH----EEEEEC-----------CEE--------CCCCCcHHHCCCCCCCEEEEEE
Confidence 3468899999999887421 11111 133332 211 3567999999999999998764
No 67
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=30.75 E-value=50 Score=23.25 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.+.||++|-.-|.... . .....|.+..-|| .|.+ . ..|.++||.|+++...--|-|
T Consensus 32 ~~~tl~~v~~fV~~~~-~--~~~~~f~L~t~fP-------rk~l--------~-~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 32 SDAPLEEARQFAAQTV-G--NTYGNFSLATMFP-------RREF--------T-REDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp TTSBHHHHHHHHHHHH-T--TSSCSCEEECSSS-------CCBC--------C-TTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCHHHHHHHHHhcc-C--CCCCceEEEcCCC-------CcCC--------c-ccccCCCHHHCCCCCceEEEE
Confidence 4679999999988762 1 1123455554455 1122 0 125679999999988655544
No 68
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=29.78 E-value=16 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.5
Q ss_pred Eecc-CCCCCCcccc
Q 031615 50 FTKI-GGHHSREDFA 63 (156)
Q Consensus 50 F~~~-g~hh~~~dF~ 63 (156)
|+.+ ++||.|+||+
T Consensus 46 FCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 46 FCQQCSRFHVLEEFD 60 (60)
T ss_dssp CCSSSCSCCBTTSCC
T ss_pred hhhhccCccCcccCC
Confidence 6654 8999999995
No 69
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=29.64 E-value=37 Score=24.32 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=38.3
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
++.+-.=++.+|+.|.....+..- . ... +++|+|- |.. -.++.|++++..+-||-|
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~g-i-~~~---~~rfiFd----------------G~~---L~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQG-I-SRN---SVRFLFD----------------GTP---IDETKTPEELGMEDDDVI 93 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHT-C-CSS---SCEEESS----------------SCB---CCSSSHHHHHHCSSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhC-C-Ccc---cEEEEEC----------------CEE---cCCCCCHHHcCCCCCCEE
Confidence 455555678899998887776311 1 111 2333332 111 245689999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
+|-+
T Consensus 94 dv~~ 97 (110)
T 2k8h_A 94 DAMV 97 (110)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9965
No 70
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.59 E-value=33 Score=23.67 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=38.0
Q ss_pred eeeeecC-CCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 73 VQIYTWK-DATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 73 lQIYTW~-DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
+.|-.-. ++|+.+|-..|.+..- .....-+ ++|- | + ..+|++||.+++..-|+.|
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~g-ip~~~Qr----L~~~---G-------------k---~L~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQ-IPANKQK----LSGK---A-------------G---FLKDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTT-CCTTTSE----EECS---S-------------S---BCCTTSBTTTTTCSSSCEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHC-CCHHHeE----EEEC---C-------------E---ECCCCCcHHHCCCCCCCEE
Confidence 4444555 8999999999987531 1111122 2221 1 1 1357799999999999998
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 99 ~l~~ 102 (111)
T 1we6_A 99 TLSL 102 (111)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
No 71
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=29.28 E-value=59 Score=23.54 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccC
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIG 148 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iG 148 (156)
.+.||++|-+.|....++.- ...|.+..-|| .|.| .|+++||.|+++...
T Consensus 71 ~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fP-------rk~l-----------~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 71 HSHRISDIRLFIVDARPAMA--ATSFVLMTTFP-------NKEL-----------ADENQTLKEANLLNA 120 (127)
T ss_dssp SSCBHHHHHHHHHHHCSGGG--TSCEEEEETTT-------TEEC-----------CSTTCBHHHHTCSSC
T ss_pred CCCCHHHHHHHHHHhCcCCC--CCCeEEecCCC-------CCCC-----------CCCCCcHHHCCCcCc
Confidence 46799999999998765321 23344443344 1222 245799999998864
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=28.89 E-value=1.1e+02 Score=23.71 Aligned_cols=60 Identities=13% Similarity=0.310 Sum_probs=39.5
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 72 EVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 72 ElQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
.+.|-...+.|+.+|-..|.+..- .....-+| +|- |+. .+|++||.+++.+-|+-|
T Consensus 117 t~~l~V~~s~TV~~LK~kI~~~~g-Ip~~~QrL----i~~----------------Gk~---L~D~~tL~dygI~~gstI 172 (189)
T 3q3f_A 117 TITLEVEPSDTIENVKAKIQDKEG-IPPDQQRL----IFA----------------GKQ---LEDGRTLSDYNIQKESTL 172 (189)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHC-CCGGGCCE----EET----------------TEE---CCTTCBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHHHHHhccC-CCHHHEEE----EEC----------------CEE---CCCCCCHHHCCCCCCCEE
Confidence 466667789999999999987521 11111122 221 111 356799999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 173 ~Lvl 176 (189)
T 3q3f_A 173 HLVL 176 (189)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8764
No 73
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=28.50 E-value=25 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.2
Q ss_pred ccccccccCcccCcEEEEEeC
Q 031615 136 DGKMLAELGFEIGDYLDVAIL 156 (156)
Q Consensus 136 d~kTL~d~rF~iGDyidvAI~ 156 (156)
+..|-+++....||.|||-++
T Consensus 72 ~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 72 PTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp TTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCCHhHcCCCCCCEEEEEEe
Confidence 457889999999999999865
No 74
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=33.93 E-value=13 Score=23.45 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=17.4
Q ss_pred CccccccccCcccCcEEEEEe
Q 031615 135 DDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 135 dd~kTL~d~rF~iGDyidvAI 155 (156)
+|++||.+++..-|+-|.+.+
T Consensus 51 ~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 51 PNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 567999999999999887653
No 75
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=26.81 E-value=28 Score=23.84 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEEe
Q 031615 76 YTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 76 YTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvAI 155 (156)
-...++|+.||-..|.+..- .... ..+++|. |.+ .+|++||.+++..-|+.|.+.+
T Consensus 37 ~v~~~~TV~~LK~~I~~~~g-ip~~----~QrLi~~-----------Gk~--------L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 37 SVTDTCTIQQLKEEISQRFK-AHPD----QLVLIFA-----------GKI--------LKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp EEETTCBHHHHHHHHHHHHT-CCGG----GEEEEET-----------TEE--------CCTTSBHHHHTCCTTCEEEEEE
T ss_pred EECCCCcHHHHHHHHHHHHC-cChh----hEEEEEC-----------CEE--------CCCcCcHHHCCCCCCCEEEEEE
Confidence 34578999999999987421 1111 1234442 211 2567999999999999988764
No 76
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=26.72 E-value=92 Score=21.77 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeC
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPD 112 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD 112 (156)
..+|..|++.+||+. +.|..|.+++|=|.
T Consensus 62 ~g~~h~evv~lLk~~-----~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 62 VGWRHYDVAKKLKEL-----KKEELFTMKLIEPK 90 (95)
T ss_dssp TTCCHHHHHHHHHHS-----CTTCEEEEEEEEEC
T ss_pred cCCCHHHHHHHHHhC-----CCCCEEEEEEECcc
Confidence 467889999999986 77889999999884
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=25.63 E-value=45 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.4
Q ss_pred CccccccccCcccCcEEEEEe
Q 031615 135 DDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 135 dd~kTL~d~rF~iGDyidvAI 155 (156)
+|++||.+++++-|+.|.+.+
T Consensus 132 ~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 132 EDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CTTSBGGGGTCCTTCEEEEEE
T ss_pred CCCCCHHHcCCCCCCEEEEEE
Confidence 567999999999999998764
No 78
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=25.59 E-value=31 Score=22.71 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.++|+.||-..|.+...-. . .+ ++++|.- .+ |.+ .. .|+++||.++++..|+-|-+
T Consensus 19 ~~~Tv~~Lk~~I~~~~gi~-~--~~--qrL~~~~-p~----k~l--------~l-~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 19 SRTRLRELQGQIAAITGIA-P--GS--QRILVGY-PP----ECL--------DL-SDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp TTCBHHHHHHHHHHHTCCC-T--TT--CCCEESS-CC----CCC--------CC-CCSSCBTTTSSCCTTCEEEC
T ss_pred CCCCHHHHHHHHHHHhCCC-c--cc--eEEEeCC-CC----ccc--------cc-CCCCCCHHHcCCCCCCEEEE
Confidence 4689999999999863211 0 11 1122210 01 111 00 23679999999999998765
No 79
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=25.28 E-value=35 Score=21.22 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=13.4
Q ss_pred ccccccCcccCcEEEEE
Q 031615 138 KMLAELGFEIGDYLDVA 154 (156)
Q Consensus 138 kTL~d~rF~iGDyidvA 154 (156)
..-.++.|..||.|.|-
T Consensus 22 ~~~~eLsf~~Gd~i~v~ 38 (70)
T 1gcq_C 22 AFGPFLRLNPGDIVELT 38 (70)
T ss_dssp GCSCBCCBCTTCEEEEE
T ss_pred CCCCcCCcCCCCEEEEE
Confidence 34568999999999873
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.24 E-value=41 Score=22.59 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidvA 154 (156)
.+.|+.||-..|.+.. ......-|+ +|.+..|+ .+. . . .+|++||.+++.+-|+-|.|.
T Consensus 27 ~~~TV~~lK~ki~~~~-gip~~~qrL----~~~~~~g~--------~~~-~--l-~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVV-GSPASCMEL----ELYGADDK--------FYS-K--L-DQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp TTSBHHHHHHHHHHHT-CSCTTTCBC----EEECSSSC--------EEE-E--C-CCSSSBTTSSSCCTTCEEEEB
T ss_pred ccCHHHHHHHHHHHHH-CCCHHHeEE----EEeCCCCc--------ccc-c--c-CCCcCCHhHCCCCCCCEEEEE
Confidence 6889999999998752 122222233 33322112 110 0 0 357899999999999988763
No 81
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=24.12 E-value=1.9e+02 Score=20.37 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEee
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYP 111 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYp 111 (156)
..||..+++..|- +..+-.|.+++|+-
T Consensus 34 ~GsTv~Dfa~~IH------~di~~~fkyA~VwG 60 (93)
T 2eki_A 34 SRTTVEDFCMKIH------KNLIKEFKYALVWG 60 (93)
T ss_dssp TSCCHHHHHHHHC------TTCTTTEEEEEEBS
T ss_pred CCCCHHHHHHHHH------HHHHhhccEEEEec
Confidence 5899999999764 45677899999875
No 82
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.38 E-value=53 Score=22.91 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=35.8
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 74 QIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 74 QIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.+-.-.++|+.||-..|.+..- .... ..+++|. |. ..+|++||.+++..-|+.|.+
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~g-i~~~----~qrL~~~-----------g~--------~L~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEG-IPPD----QQRLIFA-----------GK--------QLEDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHC-CCGG----GEEEEET-----------TE--------ECCTTSBTGGGTCCTTCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhC-cChh----hEEEEEC-----------CE--------ECCCCCCHHHcCCCCCCEEEE
Confidence 3334467888888888876421 0001 1234442 11 135779999999999999887
Q ss_pred Ee
Q 031615 154 AI 155 (156)
Q Consensus 154 AI 155 (156)
.+
T Consensus 146 ~~ 147 (152)
T 3b08_A 146 VL 147 (152)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 83
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=23.13 E-value=53 Score=23.59 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=38.2
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEE-eeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFV-YPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYL 151 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~V-YpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyi 151 (156)
+.|-...+.|..||-..|.+..- ..... .+++ |. .|+ ..+|++||.++++.-|+.|
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~g-ip~~~----QrL~~~~---------------~g~---~L~d~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIG-VHAFQ----QRLAVHP---------------SGV---ALQDRVPLASQGLGPGSTV 71 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHC-CCGGG----EEEEEET---------------TCC---BCCTTSCGGGGTCCTTCEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhC-CCHHH----EEEEEcC---------------CCC---CCCCCCCHHHcCCCCCCEE
Confidence 44445578999999999987521 11001 2333 31 111 1367899999999999999
Q ss_pred EEEe
Q 031615 152 DVAI 155 (156)
Q Consensus 152 dvAI 155 (156)
.+.+
T Consensus 72 ~l~~ 75 (159)
T 3rt3_B 72 LLVV 75 (159)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8754
No 84
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.64 E-value=1.2e+02 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHhhCcc----cc--------------CCCceEEEEEEeeCCCCCceeeec
Q 031615 81 ATLRELTDLVKEVAPA----AR--------------RRDARLSFAFVYPDKNGRFMVREV 122 (156)
Q Consensus 81 aTLrEL~~Llk~~~p~----ar--------------~~gtrlsFr~VYpD~~gr~~~kdl 122 (156)
.|.||.-.+|.+-.=- .| =..|-=.|+++| |.+|+|..-.|
T Consensus 57 ~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~e~fr~i~-d~kGr~~~~~I 115 (243)
T 3j20_E 57 KTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLP-NRIGKLILHPI 115 (243)
T ss_dssp SSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTTEEEEEEE-CSSSCEEEEEE
T ss_pred cCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccCceeEEEe-cCCCceEEEEe
Confidence 5778888887763321 01 011556899999 99998887544
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=22.38 E-value=98 Score=26.51 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=35.2
Q ss_pred eeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 75 IYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 75 IYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
|-...+.|+.+|-..|.+......-. -=..++||- |.+ .+|++||.++++.-|+.|.+
T Consensus 22 leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~-----------GK~--------L~D~~tL~dygI~~gstIv~ 79 (368)
T 1oqy_A 22 IRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYA-----------GKI--------LSDDVPIRDYRIDEKNFVVV 79 (368)
T ss_dssp ECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESS-----------SSE--------ECSSSBTTTTCCCTTSCEEE
T ss_pred EEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEEC-----------Cee--------cCCcCCHHHcCCCCCCEEEE
Confidence 33456899999999998853100000 012334442 211 24679999999999998844
No 86
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.26 E-value=42 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.3
Q ss_pred ccccCcccCcEEEEE
Q 031615 140 LAELGFEIGDYLDVA 154 (156)
Q Consensus 140 L~d~rF~iGDyidvA 154 (156)
=.++.|..||.|.|-
T Consensus 32 ~~eLsf~~Gd~i~v~ 46 (78)
T 1k1z_A 32 GGFLRLNPGDIVELT 46 (78)
T ss_dssp CCCCCBCTTCEEEEE
T ss_pred CCccCCCCCCEEEEE
Confidence 467899999999873
No 87
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=22.16 E-value=45 Score=20.26 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=11.1
Q ss_pred cccCcccCcEEEE
Q 031615 141 AELGFEIGDYLDV 153 (156)
Q Consensus 141 ~d~rF~iGDyidv 153 (156)
+++.|..||.|.|
T Consensus 18 ~eLs~~~Gd~i~v 30 (62)
T 2fpe_A 18 DELELEVDDPLLV 30 (62)
T ss_dssp TBCCBCTTCEEEE
T ss_pred CcCcCCCCCEEEE
Confidence 4688999999987
No 88
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.70 E-value=47 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=11.4
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 16 ~eLs~~~Gd~i~v~ 29 (58)
T 4e6r_A 16 DELSLVXGSRVTVM 29 (58)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CEeeEeCCCEEEEe
Confidence 46899999999873
No 89
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.68 E-value=42 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.2
Q ss_pred CccccccccCcccCcEEEEE
Q 031615 135 DDGKMLAELGFEIGDYLDVA 154 (156)
Q Consensus 135 dd~kTL~d~rF~iGDyidvA 154 (156)
+|++||.++++.-||-|-+.
T Consensus 73 ~d~~tL~~~gi~~G~~L~l~ 92 (107)
T 1wf9_A 73 DPNLRISSLNLAHGSMVYLA 92 (107)
T ss_dssp CTTCBGGGTCCCTTCEEECC
T ss_pred CCCCCHHHCCCCCCCEEEEE
Confidence 67899999999999988653
No 90
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=21.53 E-value=47 Score=19.86 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=11.5
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 15 ~eLs~~~Gd~i~v~ 28 (58)
T 1jo8_A 15 NELTFVENDKIINI 28 (58)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCcccCCCCEEEEE
Confidence 47889999999873
No 91
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=21.35 E-value=49 Score=19.50 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.6
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 15 ~eLs~~~Gd~i~v~ 28 (54)
T 2a28_A 15 DEISIDPGDIITVI 28 (54)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCccCCCCCEEEEE
Confidence 47889999999873
No 92
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.31 E-value=49 Score=20.08 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=11.6
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 20 ~eLs~~~Gd~i~v~ 33 (62)
T 1k4u_S 20 EDLEFQEGDIILVL 33 (62)
T ss_dssp SBCCBCSSCEEEEE
T ss_pred CCccCCCCCEEEEE
Confidence 37889999999874
No 93
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.14 E-value=38 Score=23.28 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.+.|+.||-..|.+.. ......-|+.|. + . |..+. .. .+|++||.+++.+-|+-|-+
T Consensus 36 ~~~TV~~LK~kI~~~~-GiP~~~QrL~~~----~-~--------g~~~~---~L-~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 36 KDLTVAQLKTKLEILT-GGCAGTMKVQVF----K-G--------DTCVS---TM-DNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp TTCBHHHHHHHHHHHH-CSCTTTEEEEEE----E-T--------TEEEE---EC-CCTTSBHHHHCCSSSCEEEE
T ss_pred ccCHHHHHHHHHHHHH-CcCHHHeEEEEe----c-C--------Ccccc---ee-CCCCCCHhHCCcCCCCEEEE
Confidence 7889999988888742 223333455443 2 1 11110 01 36789999999999998865
No 94
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=20.68 E-value=49 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=11.4
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
+++.|..||.|.|.
T Consensus 22 ~eLsf~~Gd~i~v~ 35 (68)
T 1tg0_A 22 DDLNFEKDQEIIVT 35 (68)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 46889999999873
No 95
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=20.62 E-value=50 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.6
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
+++.|..||.|.|.
T Consensus 21 ~eLs~~~Gd~i~v~ 34 (64)
T 2jte_A 21 DELTFREGEIIHLI 34 (64)
T ss_dssp SBCCBCTTCEEEEE
T ss_pred CccCCCCCCEEEEE
Confidence 47889999999874
No 96
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=20.51 E-value=51 Score=19.56 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.6
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 17 ~eLs~~~Gd~i~v~ 30 (58)
T 1sem_A 17 GELAFKRGDVITLI 30 (58)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCcCCCCCCEEEEE
Confidence 47889999999873
No 97
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.32 E-value=1.1e+02 Score=21.40 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEEE
Q 031615 79 KDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDV 153 (156)
Q Consensus 79 ~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyidv 153 (156)
.+.||++|-.-|... . .....|.+..-|| .|.| +.|.++||+|+++...--|-|
T Consensus 42 ~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fP-------rk~l----------~~d~~~TL~e~gL~p~a~L~V 95 (109)
T 2cr5_A 42 KSWNSQVLLDWMMKV-G---YHKSLYRLSTSFP-------RRAL----------EVEGGSSLEDIGITVDTVLNV 95 (109)
T ss_dssp SSSBTHHHHHHHHHH-T---CCTTTEEEECSSS-------CCBC----------CCCSSCBHHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHhc-C---CCCCCeEEEeCCC-------CcCC----------CCCCCCCHHHcCCCCCeEEEE
Confidence 456778887777743 1 1223444444455 1222 124578999999887766655
No 98
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=20.29 E-value=64 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.339 Sum_probs=38.0
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCceEEEEEEeeCCCCCceeeecceEeecCCCCCCCccccccccCcccCcEEE
Q 031615 73 VQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLD 152 (156)
Q Consensus 73 lQIYTW~DaTLrEL~~Llk~~~p~ar~~gtrlsFr~VYpD~~gr~~~kdlGsv~~g~~~~~~dd~kTL~d~rF~iGDyid 152 (156)
+.|-...+.|+.+|-..|.+..- .....- +++|- | +. .+|++||.+++.+-|+-|.
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~g-ip~~~Q----rLi~~-----------G-----k~---L~D~~tL~~y~I~~gstI~ 68 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEG-IPPDQQ----RLIFA-----------G-----KQ---LEDGRTLSDYNIQKESTLH 68 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHC-CCTTTE----EEEET-----------T-----EE---CCTTSBGGGGTCCTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHC-cCHHHE----EEEEC-----------C-----cc---ccCcCcHHHcCCCCCCEEE
Confidence 44455678899999999987422 111111 33331 1 11 3567999999999999998
Q ss_pred EEe
Q 031615 153 VAI 155 (156)
Q Consensus 153 vAI 155 (156)
+.+
T Consensus 69 Lvl 71 (169)
T 3l0w_B 69 LVL 71 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 99
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=20.24 E-value=52 Score=19.65 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.5
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 16 ~eLs~~~Gd~i~v~ 29 (58)
T 2bz8_A 16 DELTISVGEIITNI 29 (58)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CEeeECCCCEEEEE
Confidence 47889999999873
No 100
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=20.22 E-value=52 Score=19.83 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.4
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 22 ~eLs~~~Gd~i~v~ 35 (65)
T 3u23_A 22 DELELKVGDIIDIN 35 (65)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCcCCCCCCEEEEE
Confidence 46899999999863
No 101
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=20.21 E-value=52 Score=19.73 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=11.6
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 19 ~eLs~~~Gd~i~v~ 32 (59)
T 2g6f_X 19 DELSFSKGDVIHVT 32 (59)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCcCCCCCCEEEEE
Confidence 47889999999873
No 102
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=20.16 E-value=22 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=0.0
Q ss_pred CCccccccccCcccCcEEEEEe
Q 031615 134 LDDGKMLAELGFEIGDYLDVAI 155 (156)
Q Consensus 134 ~dd~kTL~d~rF~iGDyidvAI 155 (156)
.+|++||.+++..-|+-|.+.+
T Consensus 50 L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 50 LEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp ----------------------
T ss_pred CCCCCchhhhccCCCCEEEEEE
Confidence 3578999999999999887654
No 103
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=20.09 E-value=53 Score=19.43 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.5
Q ss_pred cccCcccCcEEEEE
Q 031615 141 AELGFEIGDYLDVA 154 (156)
Q Consensus 141 ~d~rF~iGDyidvA 154 (156)
.++.|..||.|.|.
T Consensus 16 ~eLs~~~Gd~i~v~ 29 (58)
T 1zuy_A 16 SELPLKKGDVIYIT 29 (58)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CcCCCCCCCEEEEE
Confidence 46889999999873
Done!