Query 031616
Match_columns 156
No_of_seqs 131 out of 1200
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 03:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 6.4E-30 1.4E-34 159.5 17.2 148 6-154 9-156 (160)
2 KOG0027 Calmodulin and related 100.0 4.8E-27 1E-31 148.9 17.0 144 11-154 2-149 (151)
3 PTZ00184 calmodulin; Provision 99.9 2.2E-25 4.7E-30 141.1 18.0 147 8-154 2-148 (149)
4 PTZ00183 centrin; Provisional 99.9 4.9E-25 1.1E-29 140.9 19.1 149 6-154 6-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 2.8E-24 6E-29 131.7 16.2 147 8-154 24-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 9.4E-23 2E-27 124.2 16.2 141 9-153 24-164 (171)
7 KOG0034 Ca2+/calmodulin-depend 99.9 2.5E-20 5.3E-25 120.3 16.2 142 9-154 25-175 (187)
8 KOG0037 Ca2+-binding protein, 99.9 1.3E-19 2.9E-24 116.9 15.5 133 15-154 55-188 (221)
9 KOG0030 Myosin essential light 99.8 3E-19 6.6E-24 107.3 13.2 144 10-154 4-151 (152)
10 KOG0036 Predicted mitochondria 99.8 4.4E-18 9.6E-23 118.9 16.0 139 9-153 6-145 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.3E-17 2.8E-22 107.9 14.9 143 8-153 20-174 (193)
12 PLN02964 phosphatidylserine de 99.6 2.1E-13 4.6E-18 102.6 13.9 105 9-118 135-243 (644)
13 KOG0037 Ca2+-binding protein, 99.5 7.7E-14 1.7E-18 90.5 9.5 86 16-108 123-208 (221)
14 KOG4223 Reticulocalbin, calume 99.5 3E-13 6.5E-18 92.4 9.6 135 16-150 162-301 (325)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.5 4.1E-13 8.9E-18 87.1 9.3 103 16-118 63-175 (193)
16 PF13499 EF-hand_7: EF-hand do 99.5 4.5E-13 9.7E-18 73.2 7.2 61 92-152 2-66 (66)
17 cd05022 S-100A13 S-100A13: S-1 99.5 5.2E-13 1.1E-17 76.6 7.4 65 90-154 8-75 (89)
18 KOG0027 Calmodulin and related 99.5 2.7E-12 5.9E-17 81.4 11.3 102 52-154 7-113 (151)
19 KOG4223 Reticulocalbin, calume 99.4 1.4E-12 3E-17 89.2 9.6 139 15-153 75-227 (325)
20 cd05022 S-100A13 S-100A13: S-1 99.4 1.5E-12 3.2E-17 74.7 7.8 70 13-82 4-76 (89)
21 PF13499 EF-hand_7: EF-hand do 99.4 1.7E-12 3.7E-17 70.9 7.6 62 18-79 1-66 (66)
22 cd05027 S-100B S-100B: S-100B 99.4 4.7E-12 1E-16 72.8 8.4 65 90-154 8-79 (88)
23 KOG0034 Ca2+/calmodulin-depend 99.4 1.2E-11 2.5E-16 80.3 11.0 100 20-119 69-176 (187)
24 PTZ00183 centrin; Provisional 99.4 2.2E-11 4.7E-16 77.7 12.2 101 53-154 17-118 (158)
25 COG5126 FRQ1 Ca2+-binding prot 99.4 1.9E-11 4.2E-16 76.9 11.4 98 19-118 58-156 (160)
26 KOG0377 Protein serine/threoni 99.4 3.5E-11 7.6E-16 85.7 12.4 136 17-154 464-615 (631)
27 cd05027 S-100B S-100B: S-100B 99.3 1.5E-11 3.2E-16 70.7 8.8 69 14-82 5-80 (88)
28 PTZ00184 calmodulin; Provision 99.3 5E-11 1.1E-15 75.2 12.0 101 53-154 11-112 (149)
29 smart00027 EH Eps15 homology d 99.3 2.9E-11 6.3E-16 70.9 9.1 71 10-82 3-73 (96)
30 KOG0038 Ca2+-binding kinase in 99.3 3.7E-10 8E-15 69.0 12.7 141 11-155 22-178 (189)
31 cd05031 S-100A10_like S-100A10 99.3 3.5E-11 7.5E-16 70.3 8.0 65 90-154 8-79 (94)
32 cd05025 S-100A1 S-100A1: S-100 99.3 5.3E-11 1.2E-15 69.2 8.4 66 89-154 8-80 (92)
33 cd05029 S-100A6 S-100A6: S-100 99.3 7.2E-11 1.6E-15 67.8 8.6 70 13-82 6-80 (88)
34 cd05029 S-100A6 S-100A6: S-100 99.3 6.7E-11 1.4E-15 68.0 8.2 65 90-154 10-79 (88)
35 cd05026 S-100Z S-100Z: S-100Z 99.3 7.3E-11 1.6E-15 68.7 8.2 65 90-154 10-81 (93)
36 cd00052 EH Eps15 homology doma 99.3 4.9E-11 1.1E-15 65.2 7.1 60 93-154 2-61 (67)
37 cd05025 S-100A1 S-100A1: S-100 99.2 1.2E-10 2.6E-15 67.7 8.7 69 14-82 6-81 (92)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 1.2E-10 2.5E-15 67.8 8.6 70 14-83 7-83 (93)
39 cd00213 S-100 S-100: S-100 dom 99.2 9.5E-11 2.1E-15 67.6 8.0 70 13-82 4-80 (88)
40 PF13833 EF-hand_8: EF-hand do 99.2 5.9E-11 1.3E-15 62.1 6.5 52 103-154 1-53 (54)
41 smart00027 EH Eps15 homology d 99.2 2E-10 4.4E-15 67.3 8.6 64 89-154 9-72 (96)
42 cd05031 S-100A10_like S-100A10 99.2 2.1E-10 4.5E-15 67.0 8.4 68 15-82 6-80 (94)
43 cd00213 S-100 S-100: S-100 dom 99.2 2.2E-10 4.8E-15 66.1 7.9 65 90-154 8-79 (88)
44 PLN02964 phosphatidylserine de 99.2 6.6E-10 1.4E-14 84.1 11.9 120 31-154 118-243 (644)
45 cd00051 EFh EF-hand, calcium b 99.2 3.6E-10 7.7E-15 60.4 7.9 61 92-152 2-62 (63)
46 PF13833 EF-hand_8: EF-hand do 99.2 2.6E-10 5.7E-15 59.6 6.9 51 30-80 1-52 (54)
47 cd00052 EH Eps15 homology doma 99.2 3.1E-10 6.8E-15 61.9 7.1 61 20-82 2-62 (67)
48 PF14658 EF-hand_9: EF-hand do 99.1 5.3E-10 1.2E-14 59.7 6.8 61 95-155 3-65 (66)
49 cd00051 EFh EF-hand, calcium b 99.1 9.8E-10 2.1E-14 58.6 7.9 61 19-79 2-62 (63)
50 cd05023 S-100A11 S-100A11: S-1 99.1 1E-09 2.3E-14 63.1 8.3 65 90-154 9-80 (89)
51 cd05023 S-100A11 S-100A11: S-1 99.1 1.5E-09 3.2E-14 62.5 8.6 70 13-82 5-81 (89)
52 cd00252 SPARC_EC SPARC_EC; ext 99.1 1.1E-09 2.3E-14 66.0 7.8 61 89-153 47-107 (116)
53 KOG0028 Ca2+-binding protein ( 99.0 1.3E-08 2.8E-13 63.3 10.9 100 53-153 33-133 (172)
54 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.7E-09 5.8E-14 64.3 7.7 65 11-79 42-106 (116)
55 PF14658 EF-hand_9: EF-hand do 99.0 3.2E-09 7E-14 56.7 6.9 62 21-82 2-65 (66)
56 KOG2562 Protein phosphatase 2 99.0 1E-08 2.3E-13 73.6 11.3 135 12-150 273-420 (493)
57 KOG2643 Ca2+ binding protein, 99.0 6.8E-09 1.5E-13 74.1 10.0 135 15-155 316-454 (489)
58 KOG0040 Ca2+-binding actin-bun 99.0 2.4E-08 5.1E-13 80.4 13.8 137 9-153 2245-2397(2399)
59 cd05030 calgranulins Calgranul 99.0 4.8E-09 1E-13 60.4 7.5 69 14-82 5-80 (88)
60 cd05030 calgranulins Calgranul 99.0 5.1E-09 1.1E-13 60.3 7.2 65 90-154 8-79 (88)
61 KOG4251 Calcium binding protei 99.0 7.5E-09 1.6E-13 68.8 8.7 66 14-79 98-166 (362)
62 KOG0041 Predicted Ca2+-binding 98.9 1.9E-08 4.1E-13 64.9 9.8 107 9-115 91-200 (244)
63 KOG0041 Predicted Ca2+-binding 98.9 1E-08 2.2E-13 66.1 8.4 66 90-155 99-164 (244)
64 KOG0036 Predicted mitochondria 98.9 3.4E-08 7.3E-13 70.2 10.8 99 52-155 13-111 (463)
65 KOG2643 Ca2+ binding protein, 98.8 2.1E-07 4.6E-12 66.7 12.4 130 18-153 234-383 (489)
66 PF12763 EF-hand_4: Cytoskelet 98.8 5.9E-08 1.3E-12 57.3 7.3 68 10-80 3-70 (104)
67 cd05024 S-100A10 S-100A10: A s 98.7 4.1E-07 8.9E-12 52.1 8.7 68 14-82 5-77 (91)
68 KOG0038 Ca2+-binding kinase in 98.7 2.1E-07 4.5E-12 57.2 7.7 101 20-120 74-179 (189)
69 KOG1029 Endocytic adaptor prot 98.6 1.7E-06 3.6E-11 66.2 13.3 140 10-154 9-257 (1118)
70 PF00036 EF-hand_1: EF hand; 98.6 5.6E-08 1.2E-12 43.7 3.3 27 92-118 2-28 (29)
71 KOG0169 Phosphoinositide-speci 98.6 1.5E-06 3.2E-11 66.3 12.7 140 10-154 129-274 (746)
72 KOG0751 Mitochondrial aspartat 98.6 6.9E-07 1.5E-11 65.2 10.5 138 11-154 27-175 (694)
73 KOG0031 Myosin regulatory ligh 98.6 4.1E-07 9E-12 56.4 7.6 44 90-133 32-75 (171)
74 cd05024 S-100A10 S-100A10: A s 98.6 1E-06 2.3E-11 50.4 8.4 63 91-154 9-76 (91)
75 PF00036 EF-hand_1: EF hand; 98.6 1.3E-07 2.9E-12 42.5 3.7 27 19-45 2-28 (29)
76 PF13405 EF-hand_6: EF-hand do 98.5 2.6E-07 5.6E-12 42.4 3.4 29 92-120 2-31 (31)
77 PF14788 EF-hand_10: EF hand; 98.5 1.3E-06 2.8E-11 44.2 6.0 49 34-82 2-50 (51)
78 PF12763 EF-hand_4: Cytoskelet 98.5 1.8E-06 4E-11 51.0 7.4 64 88-154 8-71 (104)
79 KOG0030 Myosin essential light 98.4 1E-05 2.2E-10 49.5 10.1 102 51-153 9-115 (152)
80 PF13405 EF-hand_6: EF-hand do 98.4 7.3E-07 1.6E-11 40.8 3.7 30 18-47 1-31 (31)
81 KOG2562 Protein phosphatase 2 98.3 1E-05 2.3E-10 58.7 10.0 134 18-154 175-343 (493)
82 KOG4666 Predicted phosphate ac 98.3 1.9E-06 4.2E-11 59.8 5.6 100 53-153 259-358 (412)
83 PF14788 EF-hand_10: EF hand; 98.3 4.8E-06 1E-10 42.1 5.5 48 107-154 2-49 (51)
84 PRK12309 transaldolase/EF-hand 98.3 6.2E-06 1.3E-10 59.8 8.0 54 89-155 333-386 (391)
85 KOG0046 Ca2+-binding actin-bun 98.2 1.1E-05 2.4E-10 59.4 7.9 75 8-83 10-87 (627)
86 PF13202 EF-hand_5: EF hand; P 98.2 2.8E-06 6.2E-11 36.8 2.8 23 93-115 2-24 (25)
87 KOG0377 Protein serine/threoni 98.1 1.4E-05 3E-10 57.9 7.0 66 53-118 547-615 (631)
88 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.3E-06 2.7E-11 52.6 1.4 60 15-76 52-111 (113)
89 PF13202 EF-hand_5: EF hand; P 98.1 7.1E-06 1.5E-10 35.5 3.2 24 19-42 1-24 (25)
90 PRK12309 transaldolase/EF-hand 98.1 3.2E-05 6.8E-10 56.2 8.0 59 47-119 328-386 (391)
91 KOG0040 Ca2+-binding actin-bun 98.0 1.8E-05 3.8E-10 64.7 7.0 65 90-154 2253-2324(2399)
92 KOG0751 Mitochondrial aspartat 98.0 5.2E-05 1.1E-09 55.7 8.3 121 20-148 111-238 (694)
93 PF10591 SPARC_Ca_bdg: Secrete 98.0 5.3E-06 1.2E-10 49.9 2.2 62 88-151 52-113 (113)
94 KOG1707 Predicted Ras related/ 97.9 0.00021 4.5E-09 53.7 9.7 141 8-151 186-374 (625)
95 PF09279 EF-hand_like: Phospho 97.9 5E-05 1.1E-09 43.1 4.9 62 92-154 2-69 (83)
96 KOG4666 Predicted phosphate ac 97.7 0.0002 4.4E-09 50.1 6.6 103 16-120 258-361 (412)
97 PF05042 Caleosin: Caleosin re 97.6 0.00095 2.1E-08 42.7 7.9 135 16-151 6-163 (174)
98 KOG0046 Ca2+-binding actin-bun 97.5 0.00062 1.3E-08 50.6 7.0 64 90-154 19-85 (627)
99 KOG4251 Calcium binding protei 97.3 0.0018 3.8E-08 43.8 7.0 66 52-117 100-167 (362)
100 smart00054 EFh EF-hand, calciu 97.2 0.00061 1.3E-08 29.5 3.1 26 19-44 2-27 (29)
101 smart00054 EFh EF-hand, calciu 97.2 0.00076 1.6E-08 29.2 3.4 25 93-117 3-27 (29)
102 PF09279 EF-hand_like: Phospho 97.2 0.0026 5.6E-08 36.0 6.3 64 19-83 2-71 (83)
103 KOG4065 Uncharacterized conser 97.1 0.0057 1.2E-07 36.5 6.7 69 7-77 59-141 (144)
104 KOG4065 Uncharacterized conser 96.9 0.0035 7.6E-08 37.3 5.1 59 93-151 70-142 (144)
105 KOG1955 Ral-GTPase effector RA 96.8 0.0082 1.8E-07 44.7 7.3 71 9-81 223-293 (737)
106 KOG0035 Ca2+-binding actin-bun 96.8 0.036 7.8E-07 44.3 11.1 104 10-114 740-848 (890)
107 PLN02952 phosphoinositide phos 96.8 0.022 4.7E-07 44.0 9.7 87 67-154 14-110 (599)
108 PF05517 p25-alpha: p25-alpha 96.6 0.022 4.9E-07 36.2 7.6 63 20-82 2-70 (154)
109 KOG0998 Synaptic vesicle prote 96.4 0.0062 1.4E-07 48.9 4.9 140 9-153 121-344 (847)
110 KOG1955 Ral-GTPase effector RA 96.4 0.014 3E-07 43.5 6.1 65 89-155 230-294 (737)
111 KOG0042 Glycerol-3-phosphate d 96.4 0.022 4.9E-07 43.2 7.1 79 7-85 583-661 (680)
112 KOG1264 Phospholipase C [Lipid 96.3 0.035 7.7E-07 44.0 8.3 144 10-154 136-293 (1267)
113 KOG1029 Endocytic adaptor prot 96.1 0.014 3E-07 45.8 5.0 68 11-80 189-256 (1118)
114 KOG0169 Phosphoinositide-speci 95.8 0.18 4E-06 39.6 9.8 97 52-153 135-231 (746)
115 KOG3555 Ca2+-binding proteogly 95.8 0.034 7.4E-07 39.6 5.5 99 18-121 212-313 (434)
116 KOG1265 Phospholipase C [Lipid 95.8 0.49 1.1E-05 38.3 12.1 120 28-154 159-299 (1189)
117 PF05517 p25-alpha: p25-alpha 95.8 0.092 2E-06 33.5 7.1 54 101-154 13-69 (154)
118 KOG4578 Uncharacterized conser 95.8 0.0033 7.2E-08 44.2 0.5 64 16-79 332-396 (421)
119 KOG1707 Predicted Ras related/ 95.7 0.059 1.3E-06 41.2 6.9 87 10-102 308-398 (625)
120 KOG3555 Ca2+-binding proteogly 95.3 0.044 9.6E-07 39.1 4.6 61 89-153 249-309 (434)
121 PF09069 EF-hand_3: EF-hand; 95.3 0.28 6.1E-06 28.2 8.0 60 90-154 3-75 (90)
122 KOG4578 Uncharacterized conser 95.2 0.019 4E-07 40.6 2.5 62 57-118 337-398 (421)
123 KOG4347 GTPase-activating prot 95.1 0.054 1.2E-06 41.7 5.0 28 91-118 556-583 (671)
124 PF05042 Caleosin: Caleosin re 95.0 0.57 1.2E-05 30.3 9.2 32 122-153 92-123 (174)
125 PF14513 DAG_kinase_N: Diacylg 94.9 0.19 4.1E-06 31.4 6.1 72 30-103 4-82 (138)
126 KOG4347 GTPase-activating prot 94.6 0.49 1.1E-05 36.8 8.8 105 6-112 493-612 (671)
127 KOG0042 Glycerol-3-phosphate d 93.8 0.2 4.3E-06 38.4 5.4 64 91-154 594-657 (680)
128 KOG0998 Synaptic vesicle prote 93.7 0.12 2.7E-06 41.8 4.5 139 12-155 6-191 (847)
129 KOG2243 Ca2+ release channel ( 93.2 0.18 4E-06 42.7 4.6 58 21-79 4061-4118(5019)
130 PLN02952 phosphoinositide phos 93.1 1.7 3.6E-05 34.1 9.5 87 30-117 13-109 (599)
131 KOG2243 Ca2+ release channel ( 92.9 0.26 5.7E-06 41.9 5.1 58 95-153 4062-4119(5019)
132 cd07313 terB_like_2 tellurium 92.0 1.5 3.3E-05 25.6 7.3 82 30-113 12-95 (104)
133 PLN02222 phosphoinositide phos 91.4 1.2 2.7E-05 34.6 7.0 62 91-154 26-90 (581)
134 KOG3866 DNA-binding protein of 90.7 0.77 1.7E-05 32.6 4.9 60 93-152 247-322 (442)
135 PF09068 EF-hand_2: EF hand; 90.7 2.7 5.8E-05 25.9 7.8 27 92-118 99-125 (127)
136 PLN02228 Phosphoinositide phos 90.5 2.1 4.6E-05 33.3 7.5 63 90-154 24-92 (567)
137 PLN02230 phosphoinositide phos 89.5 3 6.4E-05 32.7 7.6 65 89-154 28-102 (598)
138 PF12174 RST: RCD1-SRO-TAF4 (R 89.2 0.36 7.8E-06 26.4 1.9 59 68-134 7-66 (70)
139 KOG0035 Ca2+-binding actin-bun 88.1 2.2 4.8E-05 34.8 6.3 65 90-154 747-816 (890)
140 PF11116 DUF2624: Protein of u 87.8 3.5 7.6E-05 23.4 6.4 36 105-140 13-48 (85)
141 TIGR01848 PHA_reg_PhaR polyhyd 86.6 3.2 7E-05 24.6 4.9 19 99-117 12-30 (107)
142 PF08976 DUF1880: Domain of un 86.4 0.96 2.1E-05 27.2 2.7 31 50-80 4-34 (118)
143 PF09069 EF-hand_3: EF-hand; 84.6 5.7 0.00012 22.9 7.3 62 17-81 3-75 (90)
144 KOG3866 DNA-binding protein of 83.8 1.2 2.7E-05 31.6 2.7 91 21-118 248-354 (442)
145 PLN02223 phosphoinositide phos 83.3 7.5 0.00016 30.1 6.8 64 90-154 16-92 (537)
146 KOG0039 Ferric reductase, NADH 82.9 3.9 8.4E-05 32.5 5.4 64 88-152 16-87 (646)
147 PF11116 DUF2624: Protein of u 82.8 6.7 0.00015 22.3 8.0 69 31-99 12-82 (85)
148 PF14513 DAG_kinase_N: Diacylg 82.7 9.5 0.00021 23.9 6.3 68 68-138 6-81 (138)
149 KOG2301 Voltage-gated Ca2+ cha 81.4 1.3 2.8E-05 38.6 2.5 71 10-81 1410-1484(1592)
150 PF07879 PHB_acc_N: PHB/PHA ac 80.5 4 8.7E-05 21.8 3.3 40 97-136 10-59 (64)
151 cd07176 terB tellurite resista 80.0 8.5 0.00018 22.5 5.2 79 30-111 15-98 (111)
152 cd07313 terB_like_2 tellurium 79.9 5 0.00011 23.4 4.1 54 66-119 12-66 (104)
153 PF12174 RST: RCD1-SRO-TAF4 (R 79.1 5.1 0.00011 21.9 3.6 51 31-84 6-56 (70)
154 PF01023 S_100: S-100/ICaBP ty 78.4 6.3 0.00014 19.3 4.1 32 14-45 3-36 (44)
155 PF05099 TerB: Tellurite resis 77.3 9.2 0.0002 23.6 4.9 81 29-111 35-117 (140)
156 PLN02222 phosphoinositide phos 75.8 19 0.00041 28.4 7.0 69 8-81 19-90 (581)
157 PF08414 NADPH_Ox: Respiratory 75.0 14 0.00031 21.7 5.9 42 16-62 29-70 (100)
158 PLN02228 Phosphoinositide phos 74.7 25 0.00055 27.7 7.4 69 8-81 18-92 (567)
159 PF03672 UPF0154: Uncharacteri 73.5 12 0.00026 20.0 4.3 33 30-62 28-60 (64)
160 PRK00523 hypothetical protein; 72.1 14 0.00031 20.3 4.4 41 21-62 28-68 (72)
161 PLN02230 phosphoinositide phos 71.7 29 0.00063 27.5 7.1 64 17-81 29-102 (598)
162 PF08726 EFhand_Ca_insen: Ca2+ 70.6 7.4 0.00016 21.2 2.8 53 17-77 6-65 (69)
163 COG3763 Uncharacterized protei 70.4 15 0.00033 20.0 4.8 42 21-63 27-68 (71)
164 KOG3449 60S acidic ribosomal p 67.7 24 0.00052 21.1 6.5 45 92-136 3-47 (112)
165 KOG2871 Uncharacterized conser 67.2 7.8 0.00017 28.5 3.1 66 16-81 308-374 (449)
166 KOG4286 Dystrophin-like protei 67.0 52 0.0011 27.0 7.6 134 16-153 419-579 (966)
167 PRK01844 hypothetical protein; 65.2 21 0.00046 19.6 4.2 34 29-62 34-67 (72)
168 PF07308 DUF1456: Protein of u 64.4 21 0.00046 19.4 5.1 31 35-65 15-45 (68)
169 KOG1265 Phospholipase C [Lipid 64.0 89 0.0019 26.4 9.1 86 62-154 157-249 (1189)
170 KOG0506 Glutaminase (contains 61.2 75 0.0016 24.6 7.3 59 21-79 90-156 (622)
171 PF06569 DUF1128: Protein of u 60.8 18 0.00038 19.9 3.1 39 7-47 29-67 (71)
172 PF01885 PTS_2-RNA: RNA 2'-pho 57.5 25 0.00055 23.2 4.0 38 27-64 26-63 (186)
173 COG4103 Uncharacterized protei 57.2 30 0.00064 21.9 4.0 58 94-153 34-93 (148)
174 PF12987 DUF3871: Domain of un 57.0 59 0.0013 23.4 5.8 52 103-154 214-285 (323)
175 PTZ00373 60S Acidic ribosomal 55.9 44 0.00094 20.2 5.8 45 92-136 5-49 (112)
176 PF04157 EAP30: EAP30/Vps36 fa 55.8 62 0.0014 22.0 9.8 39 103-141 110-151 (223)
177 COG4103 Uncharacterized protei 55.6 51 0.0011 20.9 10.3 94 21-118 34-129 (148)
178 KOG4070 Putative signal transd 55.5 32 0.00069 22.0 3.9 85 16-100 11-108 (180)
179 PF03979 Sigma70_r1_1: Sigma-7 55.4 13 0.00028 20.8 2.1 31 104-136 19-49 (82)
180 PHA02902 putative IMV membrane 55.1 17 0.00038 19.3 2.4 20 5-24 48-67 (70)
181 TIGR03573 WbuX N-acetyl sugar 55.0 47 0.001 24.3 5.5 10 143-152 333-342 (343)
182 PHA02681 ORF089 virion membran 54.9 22 0.00048 20.0 2.9 27 5-32 46-72 (92)
183 PLN02223 phosphoinositide phos 54.9 88 0.0019 24.6 6.9 63 18-81 17-92 (537)
184 KOG3449 60S acidic ribosomal p 54.7 45 0.00098 20.0 6.3 52 22-78 6-57 (112)
185 PF09336 Vps4_C: Vps4 C termin 54.4 25 0.00054 18.6 3.0 26 106-131 29-54 (62)
186 PF00404 Dockerin_1: Dockerin 54.2 16 0.00035 14.8 2.5 12 101-112 2-13 (21)
187 TIGR01848 PHA_reg_PhaR polyhyd 54.2 45 0.00098 19.9 5.0 48 24-71 10-67 (107)
188 PF08461 HTH_12: Ribonuclease 54.2 30 0.00065 18.5 3.3 37 103-139 10-46 (66)
189 COG2818 Tag 3-methyladenine DN 53.9 22 0.00048 23.5 3.2 43 89-131 54-96 (188)
190 cd07316 terB_like_DjlA N-termi 53.8 42 0.00091 19.4 8.4 82 30-113 12-96 (106)
191 PF08414 NADPH_Ox: Respiratory 53.8 44 0.00096 19.7 6.3 61 53-119 30-93 (100)
192 PRK00819 RNA 2'-phosphotransfe 53.3 41 0.0009 22.2 4.4 36 28-63 28-63 (179)
193 KOG2871 Uncharacterized conser 52.8 15 0.00032 27.2 2.5 39 89-127 308-346 (449)
194 TIGR01639 P_fal_TIGR01639 Plas 52.8 34 0.00073 18.0 4.0 32 105-136 8-39 (61)
195 PF12486 DUF3702: ImpA domain 52.6 26 0.00055 22.3 3.3 32 14-45 66-97 (148)
196 KOG4004 Matricellular protein 51.2 6.6 0.00014 26.2 0.5 24 92-115 224-247 (259)
197 PF00690 Cation_ATPase_N: Cati 49.8 33 0.00072 18.2 3.1 31 92-122 6-36 (69)
198 PF12419 DUF3670: SNF2 Helicas 49.4 51 0.0011 20.6 4.3 49 103-151 80-138 (141)
199 KOG4629 Predicted mechanosensi 48.1 78 0.0017 25.9 5.9 59 90-155 404-462 (714)
200 PF01885 PTS_2-RNA: RNA 2'-pho 47.9 80 0.0017 20.9 5.9 36 101-136 27-62 (186)
201 PF07862 Nif11: Nitrogen fixat 47.1 36 0.00079 16.7 2.9 21 108-128 28-48 (49)
202 PF13623 SurA_N_2: SurA N-term 46.6 74 0.0016 20.1 7.6 41 112-152 95-145 (145)
203 PRK00819 RNA 2'-phosphotransfe 46.6 59 0.0013 21.5 4.4 30 103-132 30-59 (179)
204 cd05833 Ribosomal_P2 Ribosomal 46.2 65 0.0014 19.3 7.0 44 93-136 4-47 (109)
205 PF07499 RuvA_C: RuvA, C-termi 45.7 38 0.00083 16.6 4.6 40 110-153 4-43 (47)
206 PF09107 SelB-wing_3: Elongati 44.6 31 0.00066 17.4 2.3 30 104-138 8-37 (50)
207 KOG1954 Endocytosis/signaling 44.4 67 0.0014 24.2 4.7 54 20-76 447-500 (532)
208 KOG4403 Cell surface glycoprot 44.4 1.3E+02 0.0029 23.0 6.2 30 16-45 67-96 (575)
209 PRK09430 djlA Dna-J like membr 44.0 75 0.0016 22.4 4.9 9 67-75 69-77 (267)
210 PF04157 EAP30: EAP30/Vps36 fa 43.8 1E+02 0.0022 21.0 6.3 114 16-135 96-214 (223)
211 PF11829 DUF3349: Protein of u 43.7 67 0.0015 18.8 5.5 30 34-63 20-49 (96)
212 PF00046 Homeobox: Homeobox do 43.0 46 0.00099 16.7 6.1 44 9-59 5-48 (57)
213 PF07128 DUF1380: Protein of u 42.2 71 0.0015 20.1 4.0 32 106-137 26-57 (139)
214 COG5562 Phage envelope protein 41.9 23 0.0005 22.1 1.8 47 104-154 54-100 (137)
215 PRK09430 djlA Dna-J like membr 41.4 1.3E+02 0.0027 21.3 9.9 100 29-135 67-175 (267)
216 PF04282 DUF438: Family of unk 40.9 63 0.0014 17.7 5.9 21 41-61 4-24 (71)
217 cd00086 homeodomain Homeodomai 40.1 51 0.0011 16.4 6.5 46 8-60 4-49 (59)
218 PRK04387 hypothetical protein; 39.5 74 0.0016 18.4 3.5 52 11-62 11-63 (90)
219 PF10437 Lip_prot_lig_C: Bacte 39.4 71 0.0015 17.9 4.4 44 107-152 42-86 (86)
220 cd08315 Death_TRAILR_DR4_DR5 D 39.1 80 0.0017 18.4 7.3 88 17-133 4-91 (96)
221 TIGR01565 homeo_ZF_HD homeobox 38.1 63 0.0014 16.9 4.9 37 8-49 5-45 (58)
222 COG4359 Uncharacterized conser 37.2 1.3E+02 0.0028 20.3 6.1 44 29-78 9-52 (220)
223 PF08672 APC2: Anaphase promot 37.1 66 0.0014 16.9 2.9 33 11-45 12-44 (60)
224 COG5069 SAC6 Ca2+-binding acti 36.7 89 0.0019 24.3 4.4 85 13-101 481-565 (612)
225 PF06648 DUF1160: Protein of u 35.9 1.1E+02 0.0023 18.9 5.9 34 91-127 38-72 (122)
226 KOG3077 Uncharacterized conser 35.7 1.6E+02 0.0034 20.8 11.5 104 16-119 63-186 (260)
227 PF03250 Tropomodulin: Tropomo 35.7 1.2E+02 0.0026 19.4 4.3 22 9-30 22-43 (147)
228 TIGR03798 ocin_TIGR03798 bacte 35.6 72 0.0016 16.8 4.0 25 107-131 25-49 (64)
229 PF13551 HTH_29: Winged helix- 35.6 91 0.002 18.0 6.5 51 11-61 58-110 (112)
230 KOG2301 Voltage-gated Ca2+ cha 35.4 45 0.00098 29.9 3.1 65 87-152 1414-1482(1592)
231 PF13608 Potyvirid-P3: Protein 35.3 42 0.00092 25.6 2.7 33 14-47 286-318 (445)
232 TIGR02675 tape_meas_nterm tape 34.5 69 0.0015 17.6 2.9 12 67-78 28-39 (75)
233 PLN02508 magnesium-protoporphy 34.5 1.6E+02 0.0034 21.7 5.2 84 13-103 40-123 (357)
234 PF02761 Cbl_N2: CBL proto-onc 33.7 96 0.0021 17.7 8.1 48 32-79 21-68 (85)
235 cd08316 Death_FAS_TNFRSF6 Deat 33.5 1E+02 0.0022 18.0 7.1 78 32-133 16-93 (97)
236 TIGR00135 gatC glutamyl-tRNA(G 33.4 97 0.0021 17.7 4.1 28 107-134 1-28 (93)
237 PF06384 ICAT: Beta-catenin-in 33.4 70 0.0015 17.9 2.7 23 38-60 21-43 (78)
238 PLN00138 large subunit ribosom 33.4 1.1E+02 0.0025 18.5 5.7 42 95-136 6-47 (113)
239 PF09373 PMBR: Pseudomurein-bi 33.3 54 0.0012 14.7 2.1 15 104-118 2-16 (33)
240 cd01047 ACSF Aerobic Cyclase S 32.8 1.8E+02 0.0039 21.1 5.2 82 14-102 25-106 (323)
241 PF02337 Gag_p10: Retroviral G 32.8 69 0.0015 18.5 2.7 11 138-148 69-79 (90)
242 COG2344 AT-rich DNA-binding pr 32.5 1.5E+02 0.0033 20.0 4.6 48 10-62 6-56 (211)
243 CHL00185 ycf59 magnesium-proto 32.3 1.6E+02 0.0035 21.7 4.9 69 28-102 54-122 (351)
244 PF09312 SurA_N: SurA N-termin 32.2 66 0.0014 19.3 2.8 13 142-154 98-110 (118)
245 cd04411 Ribosomal_P1_P2_L12p R 32.1 1.2E+02 0.0025 18.1 7.4 30 107-136 17-46 (105)
246 smart00513 SAP Putative DNA-bi 32.1 58 0.0013 14.7 2.6 18 106-123 3-20 (35)
247 cd07177 terB_like tellurium re 32.0 1E+02 0.0022 17.4 7.1 78 31-113 13-95 (104)
248 KOG0113 U1 small nuclear ribon 31.9 91 0.002 22.5 3.7 69 34-102 60-128 (335)
249 KOG0506 Glutaminase (contains 31.2 1.7E+02 0.0037 22.8 5.1 62 92-153 88-157 (622)
250 KOG4718 Non-SMC (structural ma 30.7 1.8E+02 0.0039 19.9 4.9 59 4-62 86-146 (235)
251 PF04769 MAT_Alpha1: Mating-ty 30.6 1.7E+02 0.0038 19.7 5.3 78 33-110 64-146 (201)
252 KOG0039 Ferric reductase, NADH 30.5 2.2E+02 0.0047 23.2 6.0 79 34-118 4-89 (646)
253 TIGR00624 tag DNA-3-methyladen 30.3 83 0.0018 20.8 3.1 44 89-132 52-95 (179)
254 KOG4403 Cell surface glycoprot 30.0 2.6E+02 0.0056 21.6 6.5 99 29-131 40-143 (575)
255 KOG4301 Beta-dystrobrevin [Cyt 29.3 1.7E+02 0.0036 21.7 4.7 58 22-80 115-172 (434)
256 KOG4286 Dystrophin-like protei 29.0 3.3E+02 0.0071 22.8 6.5 96 18-116 471-578 (966)
257 PRK13654 magnesium-protoporphy 28.1 1.8E+02 0.0039 21.5 4.6 81 15-102 46-126 (355)
258 PRK00034 gatC aspartyl/glutamy 27.8 1.3E+02 0.0027 17.2 4.2 28 107-134 3-30 (95)
259 PF08006 DUF1700: Protein of u 27.4 92 0.002 20.3 3.1 29 34-62 1-29 (181)
260 KOG0721 Molecular chaperone (D 26.9 2.2E+02 0.0047 19.7 4.7 50 90-141 114-169 (230)
261 PF12426 DUF3674: RNA dependen 26.7 61 0.0013 15.6 1.5 15 11-25 2-16 (41)
262 PF11020 DUF2610: Domain of un 26.3 1.3E+02 0.0028 16.9 3.6 33 120-152 43-75 (82)
263 PF13373 DUF2407_C: DUF2407 C- 26.0 66 0.0014 20.3 2.1 21 8-28 8-28 (140)
264 PF01988 VIT1: VIT family; In 25.8 1.9E+02 0.0042 19.4 4.4 32 107-140 80-111 (213)
265 PRK10353 3-methyl-adenine DNA 25.7 83 0.0018 21.0 2.6 44 89-132 53-96 (187)
266 PF07199 DUF1411: Protein of u 25.2 2.2E+02 0.0048 19.1 6.9 65 15-79 120-184 (194)
267 PF09494 Slx4: Slx4 endonuclea 25.2 1.2E+02 0.0026 16.0 3.7 15 107-121 25-39 (64)
268 cd08313 Death_TNFR1 Death doma 25.1 1.4E+02 0.003 16.8 3.3 46 107-154 9-69 (80)
269 PF05872 DUF853: Bacterial pro 24.9 1.7E+02 0.0036 22.8 4.2 37 10-46 121-157 (502)
270 PF13829 DUF4191: Domain of un 24.9 2.1E+02 0.0045 19.8 4.3 40 97-136 158-197 (224)
271 COG0721 GatC Asp-tRNAAsn/Glu-t 24.8 1.5E+02 0.0034 17.2 3.9 30 106-135 2-31 (96)
272 KOG1954 Endocytosis/signaling 24.7 2.3E+02 0.0051 21.6 4.8 57 91-150 445-501 (532)
273 PF05383 La: La domain; Inter 24.6 74 0.0016 16.7 1.8 18 24-41 22-39 (61)
274 PF13331 DUF4093: Domain of un 24.2 1.5E+02 0.0033 16.9 8.3 57 69-132 30-86 (87)
275 PF13099 DUF3944: Domain of un 24.1 93 0.002 14.5 2.5 21 123-143 13-33 (35)
276 cd07894 Adenylation_RNA_ligase 23.8 3.1E+02 0.0066 20.3 5.6 39 26-64 134-182 (342)
277 TIGR03573 WbuX N-acetyl sugar 23.5 2.8E+02 0.006 20.4 5.1 66 38-116 275-342 (343)
278 PF14848 HU-DNA_bdg: DNA-bindi 23.5 1.9E+02 0.004 17.7 4.3 33 104-136 26-58 (124)
279 PRK09462 fur ferric uptake reg 23.2 2E+02 0.0043 18.0 5.0 13 41-53 6-18 (148)
280 cd08809 CARD_CARD9 Caspase act 23.2 1.6E+02 0.0035 16.9 3.4 48 31-80 28-75 (86)
281 COG4476 Uncharacterized protei 23.1 1.6E+02 0.0035 16.8 3.2 51 12-62 12-63 (90)
282 KOG0871 Class 2 transcription 23.0 1.1E+02 0.0024 19.5 2.5 24 26-49 59-82 (156)
283 PF08044 DUF1707: Domain of un 22.7 1.2E+02 0.0027 15.4 2.8 31 30-60 20-50 (53)
284 PF04433 SWIRM: SWIRM domain; 22.6 48 0.001 18.6 0.9 44 58-108 42-85 (86)
285 PF04558 tRNA_synt_1c_R1: Glut 22.5 2.3E+02 0.005 18.4 5.9 46 89-135 84-129 (164)
286 PF01325 Fe_dep_repress: Iron 22.5 1.3E+02 0.0029 15.6 4.0 53 11-72 2-54 (60)
287 TIGR02029 AcsF magnesium-proto 22.2 2.2E+02 0.0048 20.8 4.2 81 15-102 36-116 (337)
288 COG5478 Predicted small integr 22.1 2.2E+02 0.0048 18.0 4.9 33 9-41 98-130 (141)
289 COG1859 KptA RNA:NAD 2'-phosph 22.1 2.2E+02 0.0049 19.4 4.0 63 65-137 28-90 (211)
290 PHA02105 hypothetical protein 22.0 1.4E+02 0.003 15.6 4.2 47 33-79 4-55 (68)
291 KOG4422 Uncharacterized conser 21.7 4E+02 0.0086 20.9 7.9 42 92-134 226-267 (625)
292 PF02037 SAP: SAP domain; Int 21.6 1E+02 0.0022 14.0 2.2 18 33-50 3-20 (35)
293 PF07492 Trehalase_Ca-bi: Neut 21.5 19 0.00042 16.0 -0.6 16 95-110 4-19 (30)
294 TIGR02574 stabl_TIGR02574 puta 21.3 1.4E+02 0.0031 15.6 4.2 15 16-30 9-23 (63)
295 PF12767 SAGA-Tad1: Transcript 21.3 2.6E+02 0.0056 19.5 4.5 67 65-135 4-74 (252)
296 PF11422 IBP39: Initiator bind 21.2 2.6E+02 0.0056 18.5 8.8 67 55-122 21-91 (181)
297 cd07909 YciF YciF bacterial st 21.1 1.1E+02 0.0023 19.5 2.3 23 12-34 45-67 (147)
298 PHA02771 hypothetical protein; 21.1 1.9E+02 0.004 16.8 3.7 42 35-81 2-43 (90)
299 PRK08181 transposase; Validate 21.0 2.8E+02 0.0061 19.6 4.6 46 105-153 5-50 (269)
300 PF05256 UPF0223: Uncharacteri 20.5 1.9E+02 0.0041 16.7 3.7 12 70-81 34-45 (88)
301 TIGR02736 cbb3_Q_epsi cytochro 20.4 1E+02 0.0023 16.0 1.8 22 58-79 19-40 (56)
302 PF06226 DUF1007: Protein of u 20.4 1.1E+02 0.0024 20.6 2.5 25 22-46 55-79 (212)
303 PF11848 DUF3368: Domain of un 20.3 1.3E+02 0.0029 14.8 3.9 31 104-134 15-46 (48)
304 PRK10945 gene expression modul 20.2 1.7E+02 0.0038 16.1 3.5 15 105-119 33-47 (72)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=6.4e-30 Score=159.52 Aligned_cols=148 Identities=48% Similarity=0.841 Sum_probs=141.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc
Q 031616 6 YAEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE 85 (156)
Q Consensus 6 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 85 (156)
..-.++++++++.+++.|..+|++++|.|+.++|..+++.+|..++.+++..++..++. +.+.|+|.+|+.++......
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc
Confidence 34468999999999999999999999999999999999999999999999999999998 88999999999999988888
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
...+++++.+|+.||++++|+|+..++..++..+|..++++++..++..++.+++|.|+|++|.+.+..
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 888899999999999999999999999999999999999999999999999999999999999997754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-27 Score=148.92 Aligned_cols=144 Identities=61% Similarity=0.964 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhh--
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEA-- 88 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-- 88 (156)
+++.++..+.++|..+|.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 678899999999999999999999999999999999999999999999999999999999999999999876554433
Q ss_pred --HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 89 --QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 89 --~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
...++.+|+.+|++++|+|+.++|+.++..+|.+.+.+++..++...+.|++|.|+|.+|+..+..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 348999999999999999999999999999999999999999999999999999999999998864
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.95 E-value=2.2e-25 Score=141.13 Aligned_cols=147 Identities=68% Similarity=1.065 Sum_probs=136.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchh
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENE 87 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 87 (156)
+..+++++++.++..|..+|++++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+..+........
T Consensus 2 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 56789999999999999999999999999999999999998888999999999999999999999999999876655445
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
....+..+|..+|.+++|.|+.+++..++...|..++.+++..++..++.+++|.|+|++|..++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 5567899999999999999999999999999999999999999999999999999999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=4.9e-25 Score=140.90 Aligned_cols=149 Identities=46% Similarity=0.752 Sum_probs=137.0
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc
Q 031616 6 YAEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE 85 (156)
Q Consensus 6 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 85 (156)
+.+..+++.++..+...|..+|++++|.|+..+|..+++.+|..++...+..++..+|.+++|.|+|.+|+..+......
T Consensus 6 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 6 SERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999988899999999999999999999999999987655444
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
......++.+|..+|.+++|.|+..+|..++...|..++..++..++..++.+++|.|++++|..++..
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 444567999999999999999999999999999999999999999999999999999999999998864
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.8e-24 Score=131.74 Aligned_cols=147 Identities=46% Similarity=0.739 Sum_probs=140.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchh
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENE 87 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 87 (156)
..++++++.+.++..|..||++++|+|+.+||..+++.+|+.+..+++..+...++.++.|.|+|++|...+..++...+
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+.+..+|+.+|-+++|.|+...|+.+...+|.+++++++.+++..++.+++|.|+-++|...+..
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999999999999988764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=9.4e-23 Score=124.24 Aligned_cols=141 Identities=34% Similarity=0.645 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhh
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEA 88 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 88 (156)
+.|++.||+.+++.|+..|.+++|.|+.+++..++..+|...+.+++..++... +|.|+|.-|+.++...+...+.
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCH
Confidence 368999999999999999999999999999999999999999999999999776 7899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
++.+..+|..||.+++|.|..+.++.+|...|...++++++.++..+..+..|.++|..|+..+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998875
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-20 Score=120.35 Aligned_cols=142 Identities=33% Similarity=0.593 Sum_probs=121.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcc-eeHHHHHHHHHhhccch
Q 031616 9 DVLPEDQIAEFQEAFSMLDKD-GDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGT-IEFLEFLKLMATKMKEN 86 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~~~~~ 86 (156)
+.++..++.+++..|.++++. +.|+++.+||..+....- ..-..+++..++..++|. |+|++|+..+....+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELAL----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhc----CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 349999999999999999999 999999999999984322 234677888888888887 99999999999888887
Q ss_pred hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CCCC--H----HHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 87 EAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG-EKLT--D----EELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 87 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~~~~--~----~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+++++-+|+.||.+++|+|+.+|+..++..+. ...+ + +.++.++..+|.++||.|+++||++++.+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 7778999999999999999999999999999863 3344 3 33666788899999999999999998865
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-19 Score=116.87 Aligned_cols=133 Identities=27% Similarity=0.476 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELK 93 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 93 (156)
....+...|...|++++|.|+.+|+..+|.... .+.+.+-++.+...+|.+..|.|++.||..++... ..++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 456888999999999999999999999999544 66788889999999999999999999999999866 6699
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 94 EAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 94 ~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
.+|+.+|+|++|.|+..||+..+..+|..++++..+.++++++....|.|.+++|+.+|..
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999777999999999999864
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.84 E-value=3e-19 Score=107.25 Aligned_cols=144 Identities=35% Similarity=0.651 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccC--CCcceeHHHHHHHHHhhccc--
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLD--GNGTIEFLEFLKLMATKMKE-- 85 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~-- 85 (156)
.+++++...++++|..||..++|.|+..+..+.||.+|..++..++.+....+..+ +-.+++|++|+..+......
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 46788889999999999999999999999999999999999999999999888765 34689999999988765432
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
....+.+..-++.||+.++|.|...|++.++..+|..++++++..++.-.. |.+|.|.|+.|++-+++
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 233467888899999999999999999999999999999999999998776 77899999999988764
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.81 E-value=4.4e-18 Score=118.89 Aligned_cols=139 Identities=27% Similarity=0.520 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchh
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQN-PTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENE 87 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 87 (156)
...+++.-.+++.+|..+|.+++|.++..++.+.+..+..+ ........+++.+|.+.+|.++|.+|...+...
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----- 80 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----- 80 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----
Confidence 35677788899999999999999999999999999998877 667778899999999999999999999998744
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
+..+..+|...|.+++|.|+.+|+.+.++.+|.+++++++..++++.++++.+.|+++||.+++.
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 56799999999999999999999999999999999999999999999999999999999998765
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.79 E-value=1.3e-17 Score=107.86 Aligned_cols=143 Identities=25% Similarity=0.469 Sum_probs=120.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN 86 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 86 (156)
...+++.++..+.+-|.. .-++|.++.++|..++..+. ..-+...+..+|..+|.+++|.|+|.||+..+......
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG- 96 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG- 96 (193)
T ss_pred hcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-
Confidence 456888888888888876 34589999999999999877 45667788999999999999999999999999766554
Q ss_pred hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh----C-------CCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 87 EAQEELKEAFKVFDKDQDGYISPNELRHVMMNL----G-------EKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 87 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
..++.+..+|+.||.+++|+|+..|+-.++.++ | .....+.+..+|..+|.|.||.||++||...+.
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 455788899999999999999999999999864 2 123456689999999999999999999998764
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.55 E-value=2.1e-13 Score=102.58 Aligned_cols=105 Identities=26% Similarity=0.374 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhccCCCcceeHHHHHHHHHhhcc
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEE---LRNMINEVDLDGNGTIEFLEFLKLMATKMK 84 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 84 (156)
..++..|++.+.+.|..+|++++|.+ +..+++.+| ..++..+ +..++..+|.+++|.|+++||+.++... .
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-G 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-c
Confidence 36788899999999999999999997 888888888 5777776 8999999999999999999999999754 3
Q ss_pred chhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 85 ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 85 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
....++.+..+|+.+|++++|.|+.+||..++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3345678999999999999999999999999987
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.54 E-value=7.7e-14 Score=90.45 Aligned_cols=86 Identities=28% Similarity=0.458 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHH
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEA 95 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 95 (156)
++.++.+|+.+|+|++|+|+..||..+|..+|+.++.+-++.+++.++...+|.|.|++|++++..+ ..+.++
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~ 195 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEA 195 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHH
Confidence 3445566666666666666666666666666666666666666666655555666666666665544 345556
Q ss_pred HHhhcCCCCCccC
Q 031616 96 FKVFDKDQDGYIS 108 (156)
Q Consensus 96 f~~~D~~~~g~i~ 108 (156)
|+..|++..|.|+
T Consensus 196 Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 196 FRRRDTAQQGSIT 208 (221)
T ss_pred HHHhccccceeEE
Confidence 6666666555444
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3e-13 Score=92.42 Aligned_cols=135 Identities=27% Similarity=0.461 Sum_probs=109.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchh----hHH
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNP-TEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENE----AQE 90 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~----~~~ 90 (156)
+.+-++.|...|.+++|.+|.+||..+|+--.++. ..--|...+..+|+|++|.|+++||+.-+........ ...
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 44567899999999999999999999988644332 2334677788899999999999999998765543111 112
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHH
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFAR 150 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~ 150 (156)
.-...+...|+|++|+++-+|+..++..-+......++..++...|.|+||++|++|.+.
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 344677889999999999999999998888888999999999999999999999999763
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=4.1e-13 Score=87.10 Aligned_cols=103 Identities=27% Similarity=0.393 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc----------
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE---------- 85 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~---------- 85 (156)
......+|+.+|.+++|+|+..||..+|.........+.+.-.|+.||.+++|.|+++|++..+......
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 3445789999999999999999999999998888888888888999999999999999999987654321
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
...+.....+|..+|.|++|.||.+||.....+
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 234577899999999999999999999988753
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=4.5e-13 Score=73.21 Aligned_cols=61 Identities=54% Similarity=0.970 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEE----LEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
++.+|..+|++++|+|+.+||..++..++...+... +..++..+|.+++|.|+++||.+++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 688999999999999999999999999986655544 5555999999999999999999875
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=5.2e-13 Score=76.64 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDK-DQDGYISPNELRHVMMN-LGEKLTD-EELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~-~~~g~i~~~e~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|+.||+ +++|+|+..||+.++.. +|..++. +++..+++..|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 458899999999 99999999999999999 8877888 89999999999999999999999998864
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2.7e-12 Score=81.41 Aligned_cols=102 Identities=30% Similarity=0.448 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC-----CHH
Q 031616 52 EEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKL-----TDE 126 (156)
Q Consensus 52 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~-----~~~ 126 (156)
..++..+|..+|.+++|.|+..++..+++.+... ..+..+..++..+|.+++|.|++.+|..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 4568899999999999999999999999876554 4457899999999999999999999999998875433 345
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 127 ELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 127 ~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
++.++|+.+|.+++|.|+..++..+|.+
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 9999999999999999999999998865
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.4e-12 Score=89.23 Aligned_cols=139 Identities=24% Similarity=0.373 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc------cchhh
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM------KENEA 88 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~------~~~~~ 88 (156)
...++..++...|.+++|.|+..|++.++..........+..+-+..++.+.+|.|+|+++........ .....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 466889999999999999999999999988766666677888899999999999999999988765431 11111
Q ss_pred HH-------HHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 89 QE-------ELKEAFKVFDKDQDGYISPNELRHVMMNLG-EKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 89 ~~-------~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
.. +-+.-|+.-|.|++|.++++||..++..-- .....-.+.+.+...|+|+||+|+++||+--+.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 11 234459999999999999999999987653 445667788999999999999999999986543
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=1.5e-12 Score=74.74 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 13 EDQIAEFQEAFSMLDK-DGDGCITFEELASAIKS-LDQNPTE-EELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 13 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
+..+..+..+|+.||+ +++|+|+..||+.++.. ++..++. .++..+++.+|.+++|.|+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3457889999999999 99999999999999998 8877787 899999999999999999999999988655
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=1.7e-12 Score=70.89 Aligned_cols=62 Identities=45% Similarity=0.766 Sum_probs=50.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEE----ELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
+++++|+.+|.+++|+|+.+||..++..++...+.. .+..++..+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999988665543 45555888888888888888887653
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=4.7e-12 Score=72.76 Aligned_cols=65 Identities=26% Similarity=0.542 Sum_probs=59.9
Q ss_pred HHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFD-KDQDG-YISPNELRHVMMN-----LGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|..|| ++++| .|+.++|+.+++. .|...+++++..++...+.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46899999998 79999 5999999999999 888889999999999999999999999999998764
No 23
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-11 Score=80.29 Aligned_cols=100 Identities=27% Similarity=0.448 Sum_probs=86.5
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhhccCCCcceeHHHHHHHHHhhccchh------hHHH
Q 031616 20 QEAFSMLDKDGDGC-ITFEELASAIKSLDQNPTEE-ELRNMINEVDLDGNGTIEFLEFLKLMATKMKENE------AQEE 91 (156)
Q Consensus 20 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~------~~~~ 91 (156)
.++++.++++++|. |++.+|.+++..+....+.. .++..|+.||.+++|.|+.+++...+........ -...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 67889999999998 99999999999987666665 8999999999999999999999999987766322 2356
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNL 119 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~ 119 (156)
+..+|..+|.+++|.|+++|++.++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7888999999999999999999998654
No 24
>PTZ00183 centrin; Provisional
Probab=99.39 E-value=2.2e-11 Score=77.69 Aligned_cols=101 Identities=28% Similarity=0.371 Sum_probs=85.0
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL-GEKLTDEELEQM 131 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~ 131 (156)
.++..+|..+|.+++|.|++.+|..++..... ......+..+|..+|.+++|.|++++|..++... ........+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45778899999999999999999999865422 2334679999999999999999999999987654 344567789999
Q ss_pred HHHhCCCCCCCccHHHHHHHHHh
Q 031616 132 ILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 132 ~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
|+.++.+++|.|+.++|..++..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999998864
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.38 E-value=1.9e-11 Score=76.89 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=84.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHH
Q 031616 19 FQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFK 97 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 97 (156)
+.++|..+|. +++.|+..+|..++.... ...+.+++...|+.+|.+++|+|+..++...+..+ ......+.+..+++
T Consensus 58 i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~ll~ 135 (160)
T COG5126 58 INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKLLK 135 (160)
T ss_pred HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHHHH
Confidence 4567777777 999999999999998754 66779999999999999999999999999998754 33344578999999
Q ss_pred hhcCCCCCccCHHHHHHHHHH
Q 031616 98 VFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 98 ~~D~~~~g~i~~~e~~~~~~~ 118 (156)
.+|.+++|.|++++|.+.+..
T Consensus 136 ~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 136 EYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999998754
No 26
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.35 E-value=3.5e-11 Score=85.68 Aligned_cols=136 Identities=21% Similarity=0.375 Sum_probs=104.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc----------
Q 031616 17 AEFQEAFSMLDKDGDGCITFEELASAIKSL-DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE---------- 85 (156)
Q Consensus 17 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~---------- 85 (156)
..+.+-|+.+|+.++|.|+...+...+... |..++=.-+. -+....+.+|.|.|.+....+..-...
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~--~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR--PKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh--hhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 467888999999999999999999988763 4444422221 233445678899998877665322111
Q ss_pred -hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 86 -NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL----GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 86 -~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
-.+...+..+|+..|.|++|.|+.+||..+++-+ ...++.+++.++...+|.|+||+|+++||+..++.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 1222447889999999999999999999999754 57789999999999999999999999999987653
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=1.5e-11 Score=70.68 Aligned_cols=69 Identities=23% Similarity=0.485 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 14 DQIAEFQEAFSMLD-KDGDG-CITFEELASAIKS-----LDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 14 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
..+..+.++|+.|| .+++| .|+..+|..+++. ++...+..++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45778999999998 79999 6999999999998 8888899999999999999999999999999888654
No 28
>PTZ00184 calmodulin; Provisional
Probab=99.35 E-value=5e-11 Score=75.19 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL-GEKLTDEELEQM 131 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~ 131 (156)
..+...|..+|.+++|.|++.+|..++...... ...+.+..+|..+|.+++|.|++++|..++... ........+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 346778999999999999999999988654322 234678999999999999999999999998765 333456778999
Q ss_pred HHHhCCCCCCCccHHHHHHHHHh
Q 031616 132 ILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 132 ~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
|..+|.+++|.|+.++|..++..
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHH
Confidence 99999999999999999988754
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.32 E-value=2.9e-11 Score=70.88 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
.++++++..+..+|..+|.+++|.|+.+++..+++..+ .+..++..++..++.+++|.|+|++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999865 678899999999999999999999999987644
No 30
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.29 E-value=3.7e-10 Score=69.04 Aligned_cols=141 Identities=28% Similarity=0.459 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHhhCCCC-----------CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 11 LPEDQIAEFQEAFSMLDKDG-----------DGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
++..++-++..-|+.+.++- .-.++.+.+.++-.. ... ..-+++...+..++.|.++|++|+..+
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPEL-ken---pfk~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPEL-KEN---PFKRRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhh-hcC---hHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 56667777777777776531 123444444443221 111 223566777888999999999999998
Q ss_pred HhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHH----HHHHhCCCCCCCccHHHHHHHHHh
Q 031616 80 ATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG-EKLTDEELEQ----MILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
........-.-....+|+.||-|+++.|...++...+..+. ..++++++.. ++...|.++||++++.+|...+.+
T Consensus 98 SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 98 SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 77655444445677899999999999999999999999875 5688887554 566779999999999999988765
Q ss_pred c
Q 031616 155 A 155 (156)
Q Consensus 155 ~ 155 (156)
+
T Consensus 178 a 178 (189)
T KOG0038|consen 178 A 178 (189)
T ss_pred C
Confidence 3
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.29 E-value=3.5e-11 Score=70.26 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDK-DQ-DGYISPNELRHVMMN-----LGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|..+|. ++ +|.|+.+|++.+++. +|...+.+++..++..++.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 458899999997 87 699999999999986 466789999999999999999999999999988764
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.28 E-value=5.3e-11 Score=69.22 Aligned_cols=66 Identities=26% Similarity=0.542 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhc-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 89 QEELKEAFKVFD-KDQDG-YISPNELRHVMMN-LG----EKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 89 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
.+.++.+|..|| ++++| .|+..+++.+++. +| ...+++++..++..++.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 356899999997 99999 5999999999986 44 3458899999999999999999999999998764
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=7.2e-11 Score=67.84 Aligned_cols=70 Identities=14% Similarity=0.398 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 13 EDQIAEFQEAFSMLDK-DG-DGCITFEELASAIKS---LDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 13 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
++.+..+..+|..|+. ++ +|+|+..||..+++. +|.+++.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3457788999999998 66 899999999999973 6888999999999999999999999999999887654
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.26 E-value=6.7e-11 Score=67.97 Aligned_cols=65 Identities=23% Similarity=0.487 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDK-DQ-DGYISPNELRHVMMN---LGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+..+|..||. ++ +|+|+.+||+.++.. +|..++++++..+++.++.|++|.|+|++|+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 457788999998 66 899999999999974 688899999999999999999999999999988764
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.26 E-value=7.3e-11 Score=68.67 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=56.0
Q ss_pred HHHHHHHHhhc-CCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFD-KDQDG-YISPNELRHVMMNL-----GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|..|| ++++| +|+..||+.++... +...++.++..++..+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 45788899999 68998 59999999999763 33457789999999999999999999999998865
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.26 E-value=4.9e-11 Score=65.19 Aligned_cols=60 Identities=40% Similarity=0.546 Sum_probs=54.9
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 93 KEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
+.+|..+|++++|.|+.+|+..++...| .+.+++..++..++.+++|.|++++|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999999887 48889999999999999999999999988754
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=1.2e-10 Score=67.73 Aligned_cols=69 Identities=23% Similarity=0.504 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 14 DQIAEFQEAFSMLD-KDGDG-CITFEELASAIKS-LD----QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 14 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
..+..++++|..+| .+++| .|+..|+..+++. +| ..++.+++..++..+|.+++|.|+|++|+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34678999999997 99999 5999999999985 43 35688999999999999999999999999988655
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=1.2e-10 Score=67.81 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc
Q 031616 14 DQIAEFQEAFSMLD-KDGDG-CITFEELASAIKS-L----DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM 83 (156)
Q Consensus 14 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 83 (156)
..+..+.++|+.|| .+++| +|+..||..++.. . +...+..++..++..+|.+++|.|+|+||+.++..++
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 44778899999999 78998 5999999999976 2 3445778999999999999999999999999987663
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=9.5e-11 Score=67.62 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 13 EDQIAEFQEAFSMLDK--DGDGCITFEELASAIKS-LDQN----PTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 13 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
++++..+...|..+|+ +++|.|+..++..+++. ++.. .+..++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999 89999999999999976 4533 458899999999999999999999999988654
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.23 E-value=5.9e-11 Score=62.10 Aligned_cols=52 Identities=40% Similarity=0.757 Sum_probs=48.7
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 103 QDGYISPNELRHVMMNLGEK-LTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
++|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 46999999999999888999 99999999999999999999999999999864
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=2e-10 Score=67.31 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
...++.+|..+|++++|.|+.++++.+++..| ++.+++..++..++.+.+|.|++++|+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 35689999999999999999999999999876 68899999999999999999999999988764
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.20 E-value=2.1e-10 Score=66.96 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 15 QIAEFQEAFSMLDK-DG-DGCITFEELASAIKS-----LDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 15 ~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
....+...|..+|. ++ +|.|+..|+..+++. ++..++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46678999999997 87 699999999999986 4667889999999999999999999999999887543
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=2.2e-10 Score=66.08 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDK--DQDGYISPNELRHVMMN-LGEK----LTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~--~~~g~i~~~e~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|..+|+ +++|.|+.+++..+++. +|.. .+.+++..++..++.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 458889999999 89999999999999986 4533 35899999999999999999999999998764
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=99.17 E-value=6.6e-10 Score=84.11 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=90.0
Q ss_pred CCcccHHHHHHHHHHc--C-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc-cchhhH--HHHHHHHHhhcCCCC
Q 031616 31 DGCITFEELASAIKSL--D-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM-KENEAQ--EELKEAFKVFDKDQD 104 (156)
Q Consensus 31 ~g~i~~~e~~~~l~~~--~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~--~~~~~~f~~~D~~~~ 104 (156)
...++.+++....... . .....+++...|..+|.+++|.+ +...+...- ..+... ..+..+|..+|.+++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 4456666666544331 1 11223567888999999999987 333333332 122222 238899999999999
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 105 GYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 105 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
|.|+++||..++..++...+++++..+|..+|.|++|.|+++||..++..
T Consensus 194 G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999887788999999999999999999999999998765
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.17 E-value=3.6e-10 Score=60.39 Aligned_cols=61 Identities=52% Similarity=0.972 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
+..+|..+|.+++|.|+..++..++...+.+.+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998875
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=2.6e-10 Score=59.61 Aligned_cols=51 Identities=41% Similarity=0.630 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 30 GDGCITFEELASAIKSLDQN-PTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
++|.|+.++|..+++.+|.. ++.+++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888988 9999999999999999999999999999875
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.15 E-value=3.1e-10 Score=61.93 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=54.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 20 QEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 20 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
+++|..+|++++|.|+.+|+..++...|. +..++..++..++.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999998764 78889999999999999999999999887543
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=99.12 E-value=5.3e-10 Score=59.66 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=57.4
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CCccHHHHHHHHHhc
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLGE-KLTDEELEQMILEADSDGD-GQVNYEEFARMMLLA 155 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-g~i~~~ef~~~l~~~ 155 (156)
+|..||+++.|.|...++..++++.+. ...+++++.+...+|.++. |.|++++|+..|+..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 699999999999999999999999987 8899999999999999887 999999999999864
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=9.8e-10 Score=58.64 Aligned_cols=61 Identities=56% Similarity=0.922 Sum_probs=56.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 19 FQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
+..+|..+|.+++|.|+..++..+++..+...+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.11 E-value=1e-09 Score=63.12 Aligned_cols=65 Identities=26% Similarity=0.379 Sum_probs=55.6
Q ss_pred HHHHHHHHh-hcCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKV-FDKDQDG-YISPNELRHVMMNL-----GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+..+|.. .|++++| .|+.+||+.++... +...++.++..+++.++.|++|.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457889998 6777866 99999999999886 33456789999999999999999999999988764
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=1.5e-09 Score=62.51 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 13 EDQIAEFQEAFSM-LDKDGDG-CITFEELASAIKSL-----DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 13 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
+..+..+..+|.. +|.+++| +|+..||+.++... +......++..++..+|.+++|.|+|+||+.++...
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3457889999999 7777876 99999999999875 345667899999999999999999999999987654
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.08 E-value=1.1e-09 Score=65.96 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
...+...|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|++|.||++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3568899999999999999999999876 234567889999999999999999999999883
No 53
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1.3e-08 Score=63.33 Aligned_cols=100 Identities=26% Similarity=0.366 Sum_probs=84.5
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHH
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN-LGEKLTDEELEQM 131 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~-~~~~~~~~~~~~~ 131 (156)
++++..|..++++.+|.|++.++.-.++.+ ......+.+..+..-+|+++.|.|++++|...+.. ++..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 568889999999999999999996666544 22233467888999999999999999999999754 5655699999999
Q ss_pred HHHhCCCCCCCccHHHHHHHHH
Q 031616 132 ILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 132 ~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
|+.+|.+.+|+|+..+|..+..
T Consensus 112 frl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHH
Confidence 9999999999999999998765
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.7e-09 Score=64.27 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
+.+.....+...|..+|.+++|.|+.+|+..+. .......+..++..+|.+++|.|+++||..++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345566667777777777777777777777654 23345556667777777777777777776665
No 55
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=3.2e-09 Score=56.68 Aligned_cols=62 Identities=31% Similarity=0.626 Sum_probs=57.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhccCCC-cceeHHHHHHHHHhh
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSLDQ-NPTEEELRNMINEVDLDGN-GTIEFLEFLKLMATK 82 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~~ 82 (156)
..|..||+++.|.|...++..+|+..+. .+++.+++.+.+.+|+++. |.|+++.|...++.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999997 8999999999999999888 999999999988654
No 56
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.00 E-value=1e-08 Score=73.62 Aligned_cols=135 Identities=19% Similarity=0.319 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----hccCCCcceeHHHHHHHHHhhccchh
Q 031616 12 PEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINE----VDLDGNGTIEFLEFLKLMATKMKENE 87 (156)
Q Consensus 12 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~d~~~~~~i~~~ef~~~~~~~~~~~~ 87 (156)
+-+.-..+...|-.+|++++|.|+.+++...-. ..++.-.+.++|.. .-...+|+++|++|+.++...-. .+
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~ 348 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KD 348 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc-CC
Confidence 334444556669999999999999999988644 34567789999992 23456889999999999876533 33
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-------C--CCCCHHHHHHHHHHhCCCCCCCccHHHHHH
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNL-------G--EKLTDEELEQMILEADSDGDGQVNYEEFAR 150 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~ 150 (156)
....+...|+-+|.+++|.++..|++.+++.. | ...-+..+.+++........++||+.+|..
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 44678899999999999999999999888753 2 223356677777777878889999999976
No 57
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.99 E-value=6.8e-09 Score=74.08 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCC--CHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNP--TEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEE 91 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~--~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 91 (156)
+.+.++.-|..+|+..+|.|+..+|..++-... .+. ....++++-..+... +-.|+++||.+++...... ..
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l----~d 390 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL----ND 390 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh----hH
Confidence 344455667777777677777777777655432 111 112345555555433 4457777777776544222 23
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNL-GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
+..+...|-.. .+.|+..+|+++.... |..+++..++-+|+.||.|+||.++++||+..|++.
T Consensus 391 fd~Al~fy~~A-g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 391 FDIALRFYHMA-GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 44444445333 3778888888777654 788988889999999999999999999999998763
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.99 E-value=2.4e-08 Score=80.36 Aligned_cols=137 Identities=25% Similarity=0.499 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPT-------EEELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
...++++...+..+|..||.+.+|.++.++|...|+.+|+.++ .++++.++...|++.+|+|+..+|..++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 5689999999999999999999999999999999999997763 246899999999999999999999999876
Q ss_pred hccch-hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--------CCCCCccHHHHHHHH
Q 031616 82 KMKEN-EAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADS--------DGDGQVNYEEFARMM 152 (156)
Q Consensus 82 ~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~i~~~ef~~~l 152 (156)
.-... ...+.+..+|+.+|. +..+|+..++..- ++++++.-++..+-+ ...+.+.|.+|++.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 54322 223589999999998 6789999887643 566666666555432 123468999999765
Q ss_pred H
Q 031616 153 L 153 (156)
Q Consensus 153 ~ 153 (156)
.
T Consensus 2397 ~ 2397 (2399)
T KOG0040|consen 2397 F 2397 (2399)
T ss_pred h
Confidence 3
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.98 E-value=4.8e-09 Score=60.36 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 14 DQIAEFQEAFSMLDKD--GDGCITFEELASAIK-SLDQNPT----EEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
..+..+..+|+.++.. ++|.|+.+||..++. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999999976 478999999999996 5555565 8999999999999999999999999887644
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=5.1e-09 Score=60.25 Aligned_cols=65 Identities=18% Similarity=0.448 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKD--QDGYISPNELRHVMM-NLGEKLT----DEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~--~~g~i~~~e~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+..+|..|+.. ++|.|+.+||+.++. .+|..++ ++++..++..++.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4577889999866 478999999999997 4555555 899999999999999999999999998764
No 61
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.96 E-value=7.5e-09 Score=68.83 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 14 DQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD---QNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
.-.+.+..+|.+.|.+.+|.|+..|++..+.+.. +.-+.++.+..|...|++++|.|+|++|..-+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 3456788999999999999999999999987632 33455667788999999999999999987654
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.95 E-value=1.9e-08 Score=64.88 Aligned_cols=107 Identities=26% Similarity=0.384 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhh
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEA 88 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 88 (156)
+.++..+|+.+..+|..||.+.+|+|+..|++.++.++|.+.+.--++.+....|.+.+|+|+|.+|+-.++......-.
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999998887665443211
Q ss_pred H-HHHHHHHH--hhcCCCCCccCHHHHHHH
Q 031616 89 Q-EELKEAFK--VFDKDQDGYISPNELRHV 115 (156)
Q Consensus 89 ~-~~~~~~f~--~~D~~~~g~i~~~e~~~~ 115 (156)
+ ..+..+=+ ..|..+.|+-....|-..
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 1 12222222 357767676666555443
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.94 E-value=1e-08 Score=66.06 Aligned_cols=66 Identities=36% Similarity=0.605 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
..+...|..||.+.||+|++.|++.++..+|.+.+.--+..+++..+.|.+|+|++.+|+-..+.+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999877653
No 64
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.91 E-value=3.4e-08 Score=70.18 Aligned_cols=99 Identities=20% Similarity=0.324 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 031616 52 EEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQM 131 (156)
Q Consensus 52 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~ 131 (156)
...++.+|..+|.+++|.++..+....+...-.+.........+|..+|.+++|.+++++|++.+..- +.++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHH
Confidence 44588899999999999999999998877665554556788999999999999999999999998743 5778999
Q ss_pred HHHhCCCCCCCccHHHHHHHHHhc
Q 031616 132 ILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 132 ~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
|...|.+.+|.|..+|..+++..+
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHh
Confidence 999999999999999998888653
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.82 E-value=2.1e-07 Score=66.66 Aligned_cols=130 Identities=25% Similarity=0.394 Sum_probs=93.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHc------CC--------CCC-HHHHHH--HHHhhccCCCcceeHHHHHHHHH
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSL------DQ--------NPT-EEELRN--MINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~--------~~~-~~~~~~--~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
.++-.|.+||.|++|.|+.+||....+.. +. ..+ ..++.. ....+..++++.+++++|..++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 34556899999999999999999877532 11 001 112222 22334678899999999999998
Q ss_pred hhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-CCCCH--HHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 81 TKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG-EKLTD--EELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 81 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
++. ++.++.-|..+|+..+|.|+..+|..++-.+. .+... ..+..+-+.+..+ +-+|+++||.++.+
T Consensus 314 ~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 762 25577779999999999999999999998765 22222 2466677777755 67899999988754
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.78 E-value=5.9e-08 Score=57.30 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
.+++++.+.+..+|..+++ ++|.|+..+...++...+ ++...+..||...|.+++|.++++||+.++.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 5788999999999999985 689999999999999855 7789999999999999999999999998875
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=4.1e-07 Score=52.06 Aligned_cols=68 Identities=13% Similarity=0.319 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 14 DQIAEFQEAFSMLDKDGDGCITFEELASAIKS-----LDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
..+..+..+|..|. .+.++++..||+.++.. +.....+..+..++..+|.|++|.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45778889999997 45679999999999864 2344567889999999999999999999999988655
No 68
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.68 E-value=2.1e-07 Score=57.19 Aligned_cols=101 Identities=18% Similarity=0.341 Sum_probs=80.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhh----HHHHHH
Q 031616 20 QEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEA----QEELKE 94 (156)
Q Consensus 20 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~----~~~~~~ 94 (156)
+++...|..+|.|.++.++|.+++..+. ..+..-.+.-.|+.||-++++.|.-++....+..+....-. .....+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 4667777899999999999999998765 33334456667889999999999999988888777654422 235677
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhC
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLG 120 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~ 120 (156)
+...-|.+++|.+++.+|..++.+..
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 88888999999999999999987653
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.7e-06 Score=66.22 Aligned_cols=140 Identities=24% Similarity=0.386 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh-------
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK------- 82 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------- 82 (156)
.+++++-.....+|..+. -+.|+||-..-..++-..+ ++...+.+||...|.+.||+++..||.-.+.-.
T Consensus 9 avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 577888888888998884 5689999999999988766 567788999999999999999999998876111
Q ss_pred --------------------------------------------------------------------------------
Q 031616 83 -------------------------------------------------------------------------------- 82 (156)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (156)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ----------------------ccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q 031616 83 ----------------------MKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGD 140 (156)
Q Consensus 83 ----------------------~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (156)
.......-.++.+|+.+|+..+|+++-.+-+.+|...+ ++...+..++..-|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 00011223488899999999999999999999988766 667789999999999999
Q ss_pred CCccHHHHHHHHHh
Q 031616 141 GQVNYEEFARMMLL 154 (156)
Q Consensus 141 g~i~~~ef~~~l~~ 154 (156)
|+++-+||.-.|..
T Consensus 244 GkL~~dEfilam~l 257 (1118)
T KOG1029|consen 244 GKLSADEFILAMHL 257 (1118)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999977654
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5.6e-08 Score=43.74 Aligned_cols=27 Identities=52% Similarity=0.795 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
++.+|+.+|+|++|.|+++||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345555666666666666666555543
No 71
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.63 E-value=1.5e-06 Score=66.34 Aligned_cols=140 Identities=21% Similarity=0.343 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhH
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQ 89 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 89 (156)
........++..+|+..|++++|.++..+...++..+...+....+..+|...+..+++.+...+|..+.......+
T Consensus 129 ~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp--- 205 (746)
T KOG0169|consen 129 RQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP--- 205 (746)
T ss_pred hhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---
Confidence 34556677889999999999999999999999999999999999999999999999999999999999877665543
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCC----CCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLG--EKLTDEELEQMILEADSD----GDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 154 (156)
.+..+|..+-.+ .+.++.+++..++...+ ...+.+.+.++++.+... ..+.++++.|..+|..
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 477888777554 79999999999998874 557888899999888643 3456999999999864
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.63 E-value=6.9e-07 Score=65.16 Aligned_cols=138 Identities=17% Similarity=0.311 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHh---hCCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHH-HhhccCCCcceeHHHHHHHHHhhccc
Q 031616 11 LPEDQIAEFQEAFSM---LDKDGDGCITFEELASAI-KSLDQNPTEEELRNMI-NEVDLDGNGTIEFLEFLKLMATKMKE 85 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~---~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~-~~~d~~~~~~i~~~ef~~~~~~~~~~ 85 (156)
++..+...|+.+|-. .+.++..++++++|.... ..++.+....++.++. ...|..++|.|+|.||..+-..++.+
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p 106 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP 106 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc
Confidence 344444555555544 456788899999998864 3445444444555544 55678899999999999886555443
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC------CCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG------EKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
. -....+|..||+.+.|.++.+++..++.... .+++.+-+.. .|..+.-..++|.+|..+++.
T Consensus 107 D---al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 107 D---ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred h---HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHH
Confidence 2 3478899999999999999999999998653 2233322222 334344455677777666653
No 73
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.61 E-value=4.1e-07 Score=56.38 Aligned_cols=44 Identities=41% Similarity=0.820 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMIL 133 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 133 (156)
++++++|..+|.|++|.|+.++++.++.++|-..++++++.++.
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~ 75 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK 75 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555555555555555555555555555544444444444443
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.59 E-value=1e-06 Score=50.40 Aligned_cols=63 Identities=16% Similarity=0.393 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNL-----GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
.+..+|..|..+ .+.++..||+.++..- +..-.+..++.+++..|.|+||.|+|.||+.++..
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 466678888744 4788888888888652 33446777888888888888888888888887654
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.58 E-value=1.3e-07 Score=42.49 Aligned_cols=27 Identities=52% Similarity=0.853 Sum_probs=18.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031616 19 FQEAFSMLDKDGDGCITFEELASAIKS 45 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~l~~ 45 (156)
+.++|+.+|++++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456777777777777777777776654
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=2.6e-07 Score=42.37 Aligned_cols=29 Identities=59% Similarity=1.014 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHH-HhC
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMM-NLG 120 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~-~~~ 120 (156)
++.+|..+|++++|.|+.+||..+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 67889999999999999999999888 554
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.47 E-value=1.3e-06 Score=44.16 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 34 ITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
++++|++.+|+.++..+....+..+|+.+|++++|.+..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999887643
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.45 E-value=1.8e-06 Score=50.99 Aligned_cols=64 Identities=38% Similarity=0.591 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
....+..+|..++. ++|.|+-++...++...| ++.+.+..++...|.+++|.++++||+-.|+.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 44678999999985 679999999999999887 77899999999999999999999999987764
No 79
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.42 E-value=1e-05 Score=49.49 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=81.9
Q ss_pred CHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCC--CCCccCHHHHHHHHHHhC---CCCCH
Q 031616 51 TEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKD--QDGYISPNELRHVMMNLG---EKLTD 125 (156)
Q Consensus 51 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~~~~~~---~~~~~ 125 (156)
...+++.+|..+|.+++|.|++.+--.+++.+-..+.+ ..+.+....++++ +-..|++++|.-++..++ ...+-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~-aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTN-AEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcH-HHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 34788999999999999999999998888776544443 4566777777665 447899999999988774 45677
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 126 EELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 126 ~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
+++-+-++.||++++|.|...++...|.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHH
Confidence 8889999999999999999999887764
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.39 E-value=7.3e-07 Score=40.83 Aligned_cols=30 Identities=57% Similarity=0.963 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HcC
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIK-SLD 47 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 47 (156)
+++.+|+.+|.+++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999988 454
No 81
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.33 E-value=1e-05 Score=58.65 Aligned_cols=134 Identities=16% Similarity=0.330 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCC-------H--------HHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSLDQNPT-------E--------EELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~--------~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
.+.++++.++..+.+++...+|...|+.+-...+ + -.+.++|-.++....|+|+..+........
T Consensus 175 ~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~ 254 (493)
T KOG2562|consen 175 RLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLD 254 (493)
T ss_pred HHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHH
Confidence 4556677777788888888888887776432211 1 125677777888889999988866542111
Q ss_pred -ccchhhH------------HHHHHH---HHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCCC
Q 031616 83 -MKENEAQ------------EELKEA---FKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEA----DSDGDGQ 142 (156)
Q Consensus 83 -~~~~~~~------------~~~~~~---f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~ 142 (156)
+.....+ +-+..+ |..+|+|++|.|+.+++..+-... ++..-++.+|.+. ....+|+
T Consensus 255 ~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGr 331 (493)
T KOG2562|consen 255 ALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGR 331 (493)
T ss_pred HHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCc
Confidence 0000111 113333 888899999999999988776544 4567788888843 3457899
Q ss_pred ccHHHHHHHHHh
Q 031616 143 VNYEEFARMMLL 154 (156)
Q Consensus 143 i~~~ef~~~l~~ 154 (156)
++|++|+.++..
T Consensus 332 mdykdFv~FilA 343 (493)
T KOG2562|consen 332 MDYKDFVDFILA 343 (493)
T ss_pred ccHHHHHHHHHH
Confidence 999999998753
No 82
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.30 E-value=1.9e-06 Score=59.76 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=84.4
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMI 132 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 132 (156)
..+..+|..+|.+++|.++|.+.+-.+..++........++.+|++|+.+-||.+...+|..+++... .+..-.+..+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 44778899999999999999998888877777777778899999999999999999999998887642 24445567889
Q ss_pred HHhCCCCCCCccHHHHHHHHH
Q 031616 133 LEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 133 ~~~~~~~~g~i~~~ef~~~l~ 153 (156)
...+...+|+|++.+|.++..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 999988999999999998764
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.28 E-value=4.8e-06 Score=42.07 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
+++.|++.+++.+++.++++.+..+|+..|.+++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678888888888888888888888888888888888888888887653
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.27 E-value=6.2e-06 Score=59.80 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
...++.+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35688899999999999999999842 4788999999999999999999988654
No 85
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.20 E-value=1.1e-05 Score=59.35 Aligned_cols=75 Identities=31% Similarity=0.562 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNP---TEEELRNMINEVDLDGNGTIEFLEFLKLMATKM 83 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 83 (156)
.++++++++..+.+.|...| +++|+++..++..++.+.+... ..++++.+....+.+.+|+|+|++|+..+....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 46899999999999999999 9999999999999999876443 467899999999999999999999999775553
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=2.8e-06 Score=36.76 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCCCccCHHHHHHH
Q 031616 93 KEAFKVFDKDQDGYISPNELRHV 115 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~ 115 (156)
+.+|..+|.|++|.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.12 E-value=1.4e-05 Score=57.91 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHh---hccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMAT---KMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
..+..+|..+|.+++|.|+.+||.+.+.- .++..-....+-.+-+.+|-+++|.|++.||-..++-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34556666666666666666666665432 2333333445555666666666666666666666543
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.11 E-value=1.3e-06 Score=52.58 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFL 76 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 76 (156)
....+.-.|..+|.+++|.|+..|+..+.+.+ .....-+..++..+|.++++.|+..||.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 34455555666666666666666655554432 2333445555555565556666655554
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.08 E-value=7.1e-06 Score=35.50 Aligned_cols=24 Identities=46% Similarity=0.854 Sum_probs=16.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHH
Q 031616 19 FQEAFSMLDKDGDGCITFEELASA 42 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~ 42 (156)
+++.|+.+|.+++|.|+.+||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345677777777777777777664
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.05 E-value=3.2e-05 Score=56.22 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 031616 47 DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL 119 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~ 119 (156)
|.......+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5666778899999999999999999999842 4668999999999999999999988753
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.04 E-value=1.8e-05 Score=64.74 Aligned_cols=65 Identities=26% Similarity=0.552 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGEKL-------TDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+..+|..||++++|.++.++|+.++++.|+.+ ++.++..++...|++.+|.|+..+|+.+|.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 3578899999999999999999999999999766 2347999999999999999999999999975
No 92
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.01 E-value=5.2e-05 Score=55.75 Aligned_cols=121 Identities=22% Similarity=0.405 Sum_probs=69.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcC------CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHH
Q 031616 20 QEAFSMLDKDGDGCITFEELASAIKSLD------QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELK 93 (156)
Q Consensus 20 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 93 (156)
...|..||+.++|.++.+++.++++... +....+.+...|.. .....++|.+|.+++.... .+...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~~~-----~E~~~ 182 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHEFQ-----LEHAE 182 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHHHH-----HHHHH
Confidence 4455666666666666666666655432 12222333332221 2233456666666554431 13366
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC-CCccHHHH
Q 031616 94 EAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGD-GQVNYEEF 148 (156)
Q Consensus 94 ~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~i~~~ef 148 (156)
.+|+..|+.++|.|+.-+|+..+.....++...-+++.+-......+ -.+++..|
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 78999999999999999999988777666655566666655543333 33554444
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.96 E-value=5.3e-06 Score=49.88 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARM 151 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 151 (156)
....+..-|..+|.+++|.++..|+..+...+ ...+..+..++...|.|+||.|+..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34568888999999999999999988776544 345567889999999999999999999764
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.89 E-value=0.00021 Score=53.74 Aligned_cols=141 Identities=22% Similarity=0.303 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHhhccCC-----CcceeHHHHHHHHHh
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAI-KSLDQNPTEEELRNMINEVDLDG-----NGTIEFLEFLKLMAT 81 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~~~d~~~-----~~~i~~~ef~~~~~~ 81 (156)
...+++..++.+.++|...|.+.+|.++-.|+..+= .+++.++...++..+-...+..- .+.++...|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 356999999999999999999999999999998873 45778888877666655443211 223445555554321
Q ss_pred hccc-----------------------------------------hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC
Q 031616 82 KMKE-----------------------------------------NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG 120 (156)
Q Consensus 82 ~~~~-----------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~ 120 (156)
.... ..-.+-+..+|..+|.|++|.++-+|+..++...+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 1000 01113478889999999999999999999998875
Q ss_pred CCC-CHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 031616 121 EKL-TDEELEQMILEADSDGDGQVNYEEFARM 151 (156)
Q Consensus 121 ~~~-~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 151 (156)
... ...-- -.....+..|.++|+.|+..
T Consensus 346 ~~pW~~~~~---~~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 346 GSPWTSSPY---KDSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred CCCCCCCcc---cccceecccceeehhhHHHH
Confidence 322 21000 00111236788888888754
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.85 E-value=5e-05 Score=43.10 Aligned_cols=62 Identities=27% Similarity=0.587 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCC----CCCCccHHHHHHHHHh
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLG-E-KLTDEELEQMILEADSD----GDGQVNYEEFARMMLL 154 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 154 (156)
+..+|..+.. +.+.|+.++|..+++..+ . ..+.+.+..++..+..+ ..+.+++++|.++|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6788999965 679999999999998764 2 46899999999998755 4689999999999875
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.69 E-value=0.0002 Score=50.07 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHH
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKE 94 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 94 (156)
...+..+|..||.+++|.++..+-...+.-++ -+.+...++-.|++++...+|.+.=.+|...+.....-.. -.+..
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~~ 335 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVPV 335 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eeccc
Confidence 36788999999999999999999988888765 5566777888999999999999988887777655443322 24677
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhC
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLG 120 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~ 120 (156)
+|...+...+|+|+.++|+++....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999999999999999999987553
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.57 E-value=0.00095 Score=42.71 Aligned_cols=135 Identities=18% Similarity=0.154 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc---CCCcceeHHHHHHHHHhh---c------
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDL---DGNGTIEFLEFLKLMATK---M------ 83 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~i~~~ef~~~~~~~---~------ 83 (156)
...|++-..-+|+|++|.|.+.|....++.+|+.+...-+..++-.... ...+-+.=.-|.-.+.+. .
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 4467778888999999999999999999999988755544333322211 111111100010011110 0
Q ss_pred ----cchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-------CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 031616 84 ----KENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL-------GEKLTDEELEQMILEADSDGDGQVNYEEFARM 151 (156)
Q Consensus 84 ----~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 151 (156)
...-..+.+..+|.++++.+.+.+|..|+.++++.- |.--+.-|...++... .+++|.+.-++...+
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 001123679999999999888999999999999873 2112223333334333 467888887765543
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.48 E-value=0.00062 Score=50.57 Aligned_cols=64 Identities=36% Similarity=0.605 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGE---KLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++..|...| +++|+|+..++...+...+. ....+++.+++...+.|.+|+|++++|+..+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 34777899999 88999999999999988753 346889999999999999999999999986654
No 99
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.30 E-value=0.0018 Score=43.82 Aligned_cols=66 Identities=29% Similarity=0.419 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch--hhHHHHHHHHHhhcCCCCCccCHHHHHHHHH
Q 031616 52 EEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN--EAQEELKEAFKVFDKDQDGYISPNELRHVMM 117 (156)
Q Consensus 52 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~ 117 (156)
...+..+|+..|.|.++.|+-.+....+...+..- ...+..+..|+..|++++|.|+.+|++--+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34578899999999999999999888876554321 1123456679999999999999999986663
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.22 E-value=0.00061 Score=29.50 Aligned_cols=26 Identities=54% Similarity=0.947 Sum_probs=16.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 031616 19 FQEAFSMLDKDGDGCITFEELASAIK 44 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~l~ 44 (156)
+..+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 44566666666666677666666654
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.21 E-value=0.00076 Score=29.18 Aligned_cols=25 Identities=48% Similarity=0.826 Sum_probs=13.5
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHH
Q 031616 93 KEAFKVFDKDQDGYISPNELRHVMM 117 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~~~ 117 (156)
+.+|..+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555543
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.21 E-value=0.0026 Score=36.00 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=49.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhccC----CCcceeHHHHHHHHHhhc
Q 031616 19 FQEAFSMLDKDGDGCITFEELASAIKSLDQ--NPTEEELRNMINEVDLD----GNGTIEFLEFLKLMATKM 83 (156)
Q Consensus 19 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~~~ 83 (156)
+..+|..+.. +.+.|+.++|..+|+.--. ..+..++..++..+..+ ..+.++++.|..++...-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 6788999854 7899999999999986542 35788888888887544 367889999888886543
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0057 Score=36.46 Aligned_cols=69 Identities=30% Similarity=0.469 Sum_probs=44.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC------C---C-CCHHHHHH----HHHhhccCCCcceeH
Q 031616 7 AEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD------Q---N-PTEEELRN----MINEVDLDGNGTIEF 72 (156)
Q Consensus 7 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~---~-~~~~~~~~----~~~~~d~~~~~~i~~ 72 (156)
....++|++.+- ..|.+.|-++++.++--|+..++.... . + .++.++.. ++.--|.|++|.|+|
T Consensus 59 ~~a~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 59 KVAKMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhhhCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 345677776653 578888999999999999988876532 1 1 12333333 334446677777777
Q ss_pred HHHHH
Q 031616 73 LEFLK 77 (156)
Q Consensus 73 ~ef~~ 77 (156)
-||+.
T Consensus 137 gEflK 141 (144)
T KOG4065|consen 137 GEFLK 141 (144)
T ss_pred HHHHh
Confidence 77653
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0035 Score=37.33 Aligned_cols=59 Identities=25% Similarity=0.532 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHh------C---CCC-CHHH----HHHHHHHhCCCCCCCccHHHHHHH
Q 031616 93 KEAFKVFDKDQDGYISPNELRHVMMNL------G---EKL-TDEE----LEQMILEADSDGDGQVNYEEFARM 151 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~~~~~------~---~~~-~~~~----~~~~~~~~~~~~~g~i~~~ef~~~ 151 (156)
-..|.+.|-|++|.++--|+...+... | .++ ++.+ ++.++..-|.|+||.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 345788899999999988888877542 2 233 4444 444555667889999999999864
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0082 Score=44.67 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
=.+++++.+.+...|+-.-+|..|.|+-.--++++.+ -++.-.++.-||...|.+.+|.++..||+..+.-
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4689999999999999999999999999999998887 4577889999999999999999999999998754
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.81 E-value=0.036 Score=44.33 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhhccCCCcceeHHHHHHHHHhhcc
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTE-----EELRNMINEVDLDGNGTIEFLEFLKLMATKMK 84 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 84 (156)
..++.....++..|+.++....|.+++.++...|-.+|...-. +++..+....+.+.-|.+++.+|...+.....
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 4667788899999999999999999999999999999977764 22333444445555588999999999988777
Q ss_pred chhhHHHHHHHHHhhcCCCCCccCHHHHHH
Q 031616 85 ENEAQEELKEAFKVFDKDQDGYISPNELRH 114 (156)
Q Consensus 85 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 114 (156)
..+....+...|..+-+++. ++..+++.+
T Consensus 820 ~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 DLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 77777788888999977664 788888876
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=96.80 E-value=0.022 Score=43.97 Aligned_cols=87 Identities=18% Similarity=0.309 Sum_probs=58.8
Q ss_pred CcceeHHHHHHHHHhhcc-chhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHHhCC------
Q 031616 67 NGTIEFLEFLKLMATKMK-ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGE--KLTDEELEQMILEADS------ 137 (156)
Q Consensus 67 ~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~------ 137 (156)
.|.++|++|..+.+.+.. ......++..+|..+-.+ .+.|+.++|..++...+. ..+.+.+..++..+-.
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 578899998877665532 122346788888888544 378999999999987653 3566666666654421
Q ss_pred -CCCCCccHHHHHHHHHh
Q 031616 138 -DGDGQVNYEEFARMMLL 154 (156)
Q Consensus 138 -~~~g~i~~~ef~~~l~~ 154 (156)
...+.++++.|..+|..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 12345899999988864
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.63 E-value=0.022 Score=36.25 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=47.8
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh
Q 031616 20 QEAFSML---DKDGDGCITFEELASAIKSLD---QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK 82 (156)
Q Consensus 20 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 82 (156)
+.+|..| -..+...|+...|..+++..+ ..++..++..+|..+-......|+|++|..++...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455555 356678999999999999864 45889999999999866666789999999988544
No 109
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.0062 Score=48.89 Aligned_cols=140 Identities=24% Similarity=0.392 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhh------
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATK------ 82 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------ 82 (156)
-.+++++...+..+|+...+. .|.++-...+.+|..- .+....+.++|...|.+.+|.+++.+|...+...
T Consensus 121 p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 358888989999999998765 8999998888888763 4666777889999999999999999998765211
Q ss_pred ------------------------------------------------------------------------------cc
Q 031616 83 ------------------------------------------------------------------------------MK 84 (156)
Q Consensus 83 ------------------------------------------------------------------------------~~ 84 (156)
..
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 00
Q ss_pred chhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 85 ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 85 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
.......+..+|...|.+.+|.|+..+....+...| ++...+..++...+....|.+++.+|.-.+.
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 112234577899999999999999999999988855 7778899999999999999999998876554
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.014 Score=43.52 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
++.+..-|+....|-.|.|+-.--+.++..-. +.-+++..||+..|.+.||.+++.||+..++..
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 35678889999999999999999898887665 556889999999999999999999999988764
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.36 E-value=0.022 Score=43.19 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=70.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc
Q 031616 7 AEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE 85 (156)
Q Consensus 7 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 85 (156)
.+-.++++++......|..+|.++.|++..++....+...+...+...+..+.+..+.+.+|.+...+|.+++......
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 3456899999999999999999999999999999999998888899999999999999889999999999988766443
No 112
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.35 E-value=0.035 Score=44.00 Aligned_cols=144 Identities=12% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCHHHHHH-HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHhhccCCCcceeHHHHHHHHHhhccchh
Q 031616 10 VLPEDQIAE-FQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEE-LRNMINEVDLDGNGTIEFLEFLKLMATKMKENE 87 (156)
Q Consensus 10 ~~~~~~~~~-l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 87 (156)
..+|.+|.+ +++.+...|..-...++..+++.+|....+..+... +.+-|... ..+.+.++|++|..+...++-...
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccc
Confidence 356677664 478888888877888999999999988877666543 33444443 344678999999999877765432
Q ss_pred hHHH--HHH--HHHhhcCCCCCccCHHHHHHHHHHhCCCCCH---HHHHHHHHHhCCC-----CCCCccHHHHHHHHHh
Q 031616 88 AQEE--LKE--AFKVFDKDQDGYISPNELRHVMMNLGEKLTD---EELEQMILEADSD-----GDGQVNYEEFARMMLL 154 (156)
Q Consensus 88 ~~~~--~~~--~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~ 154 (156)
.... ... +...-+...--.++.++|.+++......... ..+.+++..|-.| ....+++.||+.+|.+
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 2111 111 1222233334689999999999875432222 2456666666544 3457999999999864
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.014 Score=45.78 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
++......++.+|+.+|+..+|+++-..-..+|-..+ ++...+..||..-|.++||.++-+||+-.+.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 4555667889999999999999999999999988855 6677899999999999999999999988763
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.79 E-value=0.18 Score=39.64 Aligned_cols=97 Identities=19% Similarity=0.315 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 031616 52 EEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQM 131 (156)
Q Consensus 52 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~ 131 (156)
...+..+|...|.+++|.+++.+-..++..+ ...-.....+.+|+..+...++.+...++.++....+... ++..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 4558889999999999999999988877544 3333446788889888888999999999999988776332 66777
Q ss_pred HHHhCCCCCCCccHHHHHHHHH
Q 031616 132 ILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 132 ~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
+..+..+ .+.++.+++..++.
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHH
Confidence 7777654 66777777776654
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.78 E-value=0.034 Score=39.61 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=69.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHH
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSLD---QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKE 94 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 94 (156)
+|+.=|..+-.+.++......+...-+.+. .+.=..++.=+|..+|.|.++.++..|....... .++.=++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHHH
Confidence 456666666666666555555554433322 2223456778999999999999998887665432 23455888
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCC
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLGE 121 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~~ 121 (156)
+|+.+|..++|.|+..|++..+..-..
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCCC
Confidence 999999999999999999988877663
No 116
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.77 E-value=0.49 Score=38.28 Aligned_cols=120 Identities=14% Similarity=0.318 Sum_probs=86.2
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc--CCCc-----ceeHHHHHHHHHhhccchhhHHHHHHHHHhhc
Q 031616 28 KDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDL--DGNG-----TIEFLEFLKLMATKMKENEAQEELKEAFKVFD 100 (156)
Q Consensus 28 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~~-----~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 100 (156)
.+..|.|....+...+.. .-....+...+..+.. ++.. ..+++.|..++..+++. .++..+|..+.
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHhc
Confidence 467888888877776554 2222445555544432 2222 24566777777666553 45899999999
Q ss_pred CCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCC----CCCccHHHHHHHHHh
Q 031616 101 KDQDGYISPNELRHVMMNL----------GEKLTDEELEQMILEADSDG----DGQVNYEEFARMMLL 154 (156)
Q Consensus 101 ~~~~g~i~~~e~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----~g~i~~~ef~~~l~~ 154 (156)
.++.-++|.++|..++..- -+...+..+..++..+..+. .|.++-+.|++++..
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8888999999999999742 35578888999999998764 689999999999864
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.76 E-value=0.092 Score=33.47 Aligned_cols=54 Identities=15% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 101 KDQDGYISPNELRHVMMNLG---EKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 101 ~~~~g~i~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
+.....|+-..|..+++..+ ..++...++.+|..+-..+..+|+|++|..+|..
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 44557788888888888764 3477888888888876666667888888887754
No 118
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.75 E-value=0.0033 Score=44.22 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
-+.++-.|..+|.++++.|+..|++.+-+.+. ..-...-.+.++..+|.|++..|+++||...+
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 33445555555555555555555544433221 11222334445555555555555555555444
No 119
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.75 E-value=0.059 Score=41.17 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccc
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNP----TEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKE 85 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 85 (156)
.+++.-++.+..+|..+|.+++|.+++.|+..++......+ ...+.. -.+..|.+++.-|+..|......
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHHHHhhc
Confidence 47888999999999999999999999999999999875443 111111 12367899999999988544332
Q ss_pred hhhHHHHHHHHHhhcCC
Q 031616 86 NEAQEELKEAFKVFDKD 102 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~ 102 (156)
.....--.-+|..|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 22222223345555554
No 120
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.27 E-value=0.044 Score=39.08 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
+..+..+|..+|.+.+|.++..|++.+.. .-.+..+..+|...|...||+|+-+|++.++.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 45688899999999999999999886643 35567899999999999999999999998764
No 121
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.26 E-value=0.28 Score=28.23 Aligned_cols=60 Identities=10% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHh-------------CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNL-------------GEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
++++.+|..+ .|++|.++...|..++... |. .+..+...|.... ...+|+.+.|+..++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5688889888 5778999999988888642 33 6667777777753 4567999999988764
No 122
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.16 E-value=0.019 Score=40.62 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 57 NMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 57 ~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
-.|..+|.|.++.|+..||..+=..+........=.+.+|+.+|.|+|..|+++|+...+..
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34666677777777666655543333333333344666777777777777777777766643
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.12 E-value=0.054 Score=41.73 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
-...+|+.+|.+.+|.+++.++...+..
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 3444455555555555555554444443
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.99 E-value=0.57 Score=30.32 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 122 KLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
.+.++.++++|..+...+.+.+|+.|..+++.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 35566667777777666666777777766654
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=94.86 E-value=0.19 Score=31.39 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh-------ccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCC
Q 031616 30 GDGCITFEELASAIKSLDQNPTEEELRNMINEV-------DLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKD 102 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~-------d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 102 (156)
..+.|++.||.++-.-.. .+...+..++..+ ..+..+.|+|+.|..++...+...-.++-.+.+|..|-+.
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 456778888777433221 2333455555555 2334568999999999988876666677899999999765
Q ss_pred C
Q 031616 103 Q 103 (156)
Q Consensus 103 ~ 103 (156)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 4
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.60 E-value=0.49 Score=36.79 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=72.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCC-----------CCC---CcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcce
Q 031616 6 YAEDVLPEDQIAEFQEAFSMLDK-----------DGD---GCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTI 70 (156)
Q Consensus 6 ~~~~~~~~~~~~~l~~~f~~~d~-----------~~~---g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i 70 (156)
+....++..+...+..+|..--. +-. .+++...+..+++.+. ...+..-+..+|...|.+.+|.+
T Consensus 493 ~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~L 572 (671)
T KOG4347|consen 493 VQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLL 572 (671)
T ss_pred cccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCccee
Confidence 34456888888888888754321 111 1234444555544433 22444557889999999999999
Q ss_pred eHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHH
Q 031616 71 EFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNEL 112 (156)
Q Consensus 71 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 112 (156)
+|.+++..+..+.... .-+.+.-+|..+|.+++ ..+.++.
T Consensus 573 tf~~lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 573 TFKDLVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred EHHHHHHHHHHHHhhh-HHHHHHHHHhhccCCcc-ccccccc
Confidence 9999999987665443 33678889999999998 8888887
No 127
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.85 E-value=0.2 Score=38.40 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..+.-|..+|.++.|+++++++.++++..+..++.+..++++...+.+..|.+...+|..++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3556799999999999999999999999998899999999999999888999999999887653
No 128
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=0.12 Score=41.80 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc--------
Q 031616 12 PEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM-------- 83 (156)
Q Consensus 12 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~-------- 83 (156)
.+.....+..+|...|..+.|.|+..+-..++...+ +....+-++|...+..+.|..+...|...++...
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCc
Confidence 334447788999999999999999999999988855 6678888899999988889999888888763320
Q ss_pred --------------------------c-------------chhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCC
Q 031616 84 --------------------------K-------------ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLT 124 (156)
Q Consensus 84 --------------------------~-------------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~ 124 (156)
. .....-.+..+|+.+... .|.++-...+.++..-+ +.
T Consensus 84 ~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp 160 (847)
T KOG0998|consen 84 SAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LP 160 (847)
T ss_pred CccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CC
Confidence 0 011123466678888765 69999988888876554 66
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 125 DEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
...+..++...+.+.+|.++..+|.-.++.+
T Consensus 161 ~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 161 SDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred hhhhccccccccccccCCCChhhhhhhhhHH
Confidence 7778889999999999999999998877643
No 129
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.16 E-value=0.18 Score=42.72 Aligned_cols=58 Identities=21% Similarity=0.465 Sum_probs=49.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
..|..+|+++.|.|+..+|..++.. ....+..++..++.....+.+..++|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4567889999999999999998764 345677888999988888889999999999865
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=93.10 E-value=1.7 Score=34.05 Aligned_cols=87 Identities=7% Similarity=0.202 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch-hhHHHHHHHHHhh----c--
Q 031616 30 GDGCITFEELASAIKSLDQ--NPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN-EAQEELKEAFKVF----D-- 100 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 100 (156)
+.|.+++++|..+.+.+.. ..+..++..+|..+.. +.+.++.++|..++....... ........++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988887642 3368899999999954 346899999999997654432 2223344444322 1
Q ss_pred -CCCCCccCHHHHHHHHH
Q 031616 101 -KDQDGYISPNELRHVMM 117 (156)
Q Consensus 101 -~~~~g~i~~~e~~~~~~ 117 (156)
....+.++++.|..++.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12235689999998885
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.88 E-value=0.26 Score=41.88 Aligned_cols=58 Identities=26% Similarity=0.484 Sum_probs=49.6
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
.|..+|.|+.|.|+..+|...+.... ..+.++++-++.....|.+..++|++|+.-++
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 37888999999999999999987654 35778888899888999999999999997654
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=92.05 E-value=1.5 Score=25.64 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCcc
Q 031616 30 GDGCITFEELASAIKSLD--QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYI 107 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 107 (156)
.+|.++..|...+-+.+. +.++..+...+...+........++.+|...+........-...+..+|..-- .||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 367888887766654322 34667777777777766556667888888887655433333344555666653 45888
Q ss_pred CHHHHH
Q 031616 108 SPNELR 113 (156)
Q Consensus 108 ~~~e~~ 113 (156)
+..|-.
T Consensus 90 ~~~E~~ 95 (104)
T cd07313 90 DEYEEH 95 (104)
T ss_pred CHHHHH
Confidence 888744
No 133
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.38 E-value=1.2 Score=34.64 Aligned_cols=62 Identities=19% Similarity=0.411 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHHhCC-CCCCCccHHHHHHHHHh
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNLGE--KLTDEELEQMILEADS-DGDGQVNYEEFARMMLL 154 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~l~~ 154 (156)
.+..+|..+.. .+.++.++|..++...+. ..+.+.+..++..+.. ...+.++++.|.++|.+
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 46666666643 356777777777666542 2345556666665532 23455777777776653
No 134
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.74 E-value=0.77 Score=32.62 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHh-----CCCCCH-----------HHHHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 93 KEAFKVFDKDQDGYISPNELRHVMMNL-----GEKLTD-----------EELEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
+..|...|.|++|.++..++..++..- ...-.+ ..-..+++..|.|.|.-||.++|++.-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 445777889999999999999988542 111111 123456888999999999999998753
No 135
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.65 E-value=2.7 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
+..++..||+.++|.|+.-.++-.+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 555788899999999999998877643
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=90.46 E-value=2.1 Score=33.29 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCC----CCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGE--KLTDEELEQMILEADSD----GDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 154 (156)
.++..+|..+-. ++.++.++|.+++...+. ..+.+.+..++..+... ..|.++.+.|..+|.+
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 445666666542 245666666666655432 12344455555555432 2345666666666643
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.46 E-value=3 Score=32.74 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC-C--CCCHHHHHHHHHHhCCC-------CCCCccHHHHHHHHHh
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLG-E--KLTDEELEQMILEADSD-------GDGQVNYEEFARMMLL 154 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~l~~ 154 (156)
..++..+|..+..++ +.++.++|.+++...+ . ..+.+.+..++..+... ..+.++.+.|..+|..
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 356888998885444 7999999999998766 2 23566666776654221 2346999999998865
No 138
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=89.19 E-value=0.36 Score=26.38 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=36.6
Q ss_pred cceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q 031616 68 GTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL-GEKLTDEELEQMILE 134 (156)
Q Consensus 68 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~~~~ 134 (156)
--++|......+....+.. ....+...|+.-+.+.|+.+||.+.++.+ | +..+..+++.
T Consensus 7 p~~~F~~L~~~l~~~l~~~----~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG----D~lL~s~I~~ 66 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPS----KMDLLQKHYEEFKKKKISREEFVRKLRQIVG----DQLLRSAIKS 66 (70)
T ss_pred CcccHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3466777777776665543 24444444544467889999999888875 4 4445555544
No 139
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=88.09 E-value=2.2 Score=34.78 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHH--HHHHHHH---HhCCCCCCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDE--ELEQMIL---EADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~g~i~~~ef~~~l~~ 154 (156)
..++.+|+.+++...|..+.+++.+.+...|...-.+ -+.+++. .-+.+.-|.+++.+|...|..
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4689999999999999999999999999999876642 2333333 334445588999999988754
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.79 E-value=3.5 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.3
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q 031616 105 GYISPNELRHVMMNLGEKLTDEELEQMILEADSDGD 140 (156)
Q Consensus 105 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (156)
..||..||..+.+.+|.+++.+.+..++..+-.++-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~i 48 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNI 48 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC
Confidence 457888888888888888888888888777765543
No 141
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=86.62 E-value=3.2 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.646 Sum_probs=8.8
Q ss_pred hcCCCCCccCHHHHHHHHH
Q 031616 99 FDKDQDGYISPNELRHVMM 117 (156)
Q Consensus 99 ~D~~~~g~i~~~e~~~~~~ 117 (156)
||+..+.+|+.+++.++.+
T Consensus 12 YDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cCCCccceeeHHHHHHHHH
Confidence 3444444444444444443
No 142
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.44 E-value=0.96 Score=27.22 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 50 PTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 50 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
++.++.+.++..+-.|..|++.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6788999999999999999999999988764
No 143
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.64 E-value=5.7 Score=22.89 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 17 AEFQEAFSMLDKDGDGCITFEELASAIKSL-------D----QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 17 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
..++-+|..+ .|++|.++...|..+|+.. | +...+..++.-|... .....|+-++|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4567788888 7889999999999988753 1 222455555555554 23556788888877754
No 144
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.79 E-value=1.2 Score=31.64 Aligned_cols=91 Identities=20% Similarity=0.331 Sum_probs=55.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHc---CCCCC--HHH-----------HHHHHHhhccCCCcceeHHHHHHHHHhhcc
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSL---DQNPT--EEE-----------LRNMINEVDLDGNGTIEFLEFLKLMATKMK 84 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~--~~~-----------~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 84 (156)
..|...|.+++|.++..|+..++..- -.... ..+ -.-++..+|+|.+..|+.++|+..-.+.-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 35667778999999999999887641 01111 111 123566779999999999999887544322
Q ss_pred chhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHH
Q 031616 85 ENEAQEELKEAFKVFDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 85 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~ 118 (156)
... ..-|..++. ...-|.++++++-+.
T Consensus 328 ~~p-----~e~WEtl~q--~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 328 NPP-----KEEWETLGQ--KKVYTEEELQQFERE 354 (442)
T ss_pred CCc-----chhhhhhcc--cccccHHHHHHHHHH
Confidence 111 123444432 345666666665543
No 145
>PLN02223 phosphoinositide phospholipase C
Probab=83.34 E-value=7.5 Score=30.14 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHH---HHhC--CCCCHHHHHHHHHHhCCCC--------CCCccHHHHHHHHHh
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVM---MNLG--EKLTDEELEQMILEADSDG--------DGQVNYEEFARMMLL 154 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~--------~g~i~~~ef~~~l~~ 154 (156)
+.++.+|..+. .+.|.++.+.+.+++ ...+ ...+.+++..++..+-... .+.++.+.|..+|.+
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 56788888884 456888888888888 4433 3456666777766653221 256899999998865
No 146
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.86 E-value=3.9 Score=32.54 Aligned_cols=64 Identities=27% Similarity=0.482 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh--------CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 88 AQEELKEAFKVFDKDQDGYISPNELRHVMMNL--------GEKLTDEELEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 88 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
.+..++..|..+|. .+|.++.+++..++... ....+.+....++...+.+..|.+.+.++...+
T Consensus 16 ~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 16 YDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILL 87 (646)
T ss_pred hhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHH
Confidence 34456666666665 55666666666555432 122333444555555555555555555444433
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=82.83 E-value=6.7 Score=22.32 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhcc--chhhHHHHHHHHHhh
Q 031616 31 DGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMK--ENEAQEELKEAFKVF 99 (156)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~ 99 (156)
-..||.+||....+..+.+++.++++.+...+-.+.-.-.+-++=..++..... ++.....+..+|..|
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999986555444454554444433221 223334455555543
No 148
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.66 E-value=9.5 Score=23.93 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=36.9
Q ss_pred cceeHHHHHHHHHhhccchhhHHHHHHHHHhhc-------CCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC
Q 031616 68 GTIEFLEFLKLMATKMKENEAQEELKEAFKVFD-------KDQDGYISPNELRHVMMNL-GEKLTDEELEQMILEADSD 138 (156)
Q Consensus 68 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 138 (156)
+.++..||.++-.-..... ..++.+...|. -+..+.|+++-|+.+++.+ ...++++-...+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~eys~---kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST---KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 4577778777643222111 12444444442 1345699999999999986 5668888888999888643
No 149
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.41 E-value=1.3 Score=38.62 Aligned_cols=71 Identities=20% Similarity=0.371 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCC----HHHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPT----EEELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
.+++.+.+.+.++|+.+|++..|+|...++..+++.+..++. ... +.+-..+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 599999999999999999999999999999999998643321 111 33333344567888998887666543
No 150
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=80.50 E-value=4 Score=21.77 Aligned_cols=40 Identities=28% Similarity=0.594 Sum_probs=28.7
Q ss_pred HhhcCCCCCccCHHHHHHHHHH----------hCCCCCHHHHHHHHHHhC
Q 031616 97 KVFDKDQDGYISPNELRHVMMN----------LGEKLTDEELEQMILEAD 136 (156)
Q Consensus 97 ~~~D~~~~g~i~~~e~~~~~~~----------~~~~~~~~~~~~~~~~~~ 136 (156)
+.||+..+.+|+.+++.++.+. -|..++...+..++..-.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e 59 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEE 59 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHH
Confidence 3578888899999999998874 256667766666655443
No 151
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=79.96 E-value=8.5 Score=22.50 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHHcC--C---CCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCC
Q 031616 30 GDGCITFEELASAIKSLD--Q---NPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQD 104 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~--~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 104 (156)
-+|.++..|...+.+.+. . ......+..++...-..- ...+..++...+........-...+..++.... .|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~--aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAA--AD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--cc
Confidence 368888888777766543 1 233344555554442210 123445555555554442222344555566663 45
Q ss_pred CccCHHH
Q 031616 105 GYISPNE 111 (156)
Q Consensus 105 g~i~~~e 111 (156)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 7888776
No 152
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=79.85 E-value=5 Score=23.39 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=27.5
Q ss_pred CCcceeHHHHHHHHHhhccc-hhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 031616 66 GNGTIEFLEFLKLMATKMKE-NEAQEELKEAFKVFDKDQDGYISPNELRHVMMNL 119 (156)
Q Consensus 66 ~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~ 119 (156)
-||.++-.|-...-..+... .-.......+...+........+..++.+.+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 37888877744433221111 1122334445455544445567777777766543
No 153
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.07 E-value=5.1 Score=21.90 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhcc
Q 031616 31 DGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMK 84 (156)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 84 (156)
+-.+++..+..++.. .++......+...|+.-..+.|+.++|+..++....
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 445666666666665 445555666666665556788999999998877654
No 154
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=78.44 E-value=6.3 Score=19.28 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH
Q 031616 14 DQIAEFQEAFSMLDK--DGDGCITFEELASAIKS 45 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~ 45 (156)
..+..+..+|..|.. ....+++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 346677788888853 23568888898888765
No 155
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=77.29 E-value=9.2 Score=23.55 Aligned_cols=81 Identities=25% Similarity=0.328 Sum_probs=48.0
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCc
Q 031616 29 DGDGCITFEELASAIKSL--DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGY 106 (156)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 106 (156)
.-+|.++..|...+.+.+ ....+......+...++.-.....++.+++..+............+..++..... ||.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~ 112 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGE 112 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCC
Confidence 357999999988876655 2344555666666666544444677788877765544433334556777777754 477
Q ss_pred cCHHH
Q 031616 107 ISPNE 111 (156)
Q Consensus 107 i~~~e 111 (156)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 77666
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.82 E-value=19 Score=28.42 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcc-CCCcceeHHHHHHHHHh
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQ--NPTEEELRNMINEVDL-DGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~ 81 (156)
....++. .+..+|..+.. ++.++.++|..+|+.... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 19 ~~~~~~~---ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 19 TASEAPR---EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred ccCCCcH---HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3444555 45566666643 479999999999987653 2466778888877632 23566999999998854
No 157
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.01 E-value=14 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
+..+++-|..+-. +|.|+...|... +|..-+.+...++|..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~C---IGM~dSkeFA~eLFdAL 70 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGEC---IGMKDSKEFAGELFDAL 70 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHH---HT--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHh---cCCcccHHHHHHHHHHH
Confidence 4445555555533 455555555443 33334444444444443
No 158
>PLN02228 Phosphoinositide phospholipase C
Probab=74.74 E-value=25 Score=27.68 Aligned_cols=69 Identities=14% Similarity=0.348 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhccC----CCcceeHHHHHHHHHh
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQ--NPTEEELRNMINEVDLD----GNGTIEFLEFLKLMAT 81 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~ 81 (156)
....++.++.. +|..+.. ++.++.++|..+|+.... ..+.+.+..++..+... ..|.++.+.|..++..
T Consensus 18 ~~~~~~~ei~~---if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 18 KTREPPVSIKR---LFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCCcHHHHH---HHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 33446666555 4555532 368999999999987642 24566788888887543 3467999999888744
No 159
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=73.46 E-value=12 Score=20.05 Aligned_cols=33 Identities=12% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 30 GDGCITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
.+-.|+.+.+...+...|.++++..++++.+.+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 467899999999999999999999999998776
No 160
>PRK00523 hypothetical protein; Provisional
Probab=72.08 E-value=14 Score=20.26 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
+.|..+ -..+-.|+.+-+...+...|.++|+..++++.+.+
T Consensus 28 k~~~k~-l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQ-IRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHH-HHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 334443 23467899999999999999999999999998776
No 161
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.74 E-value=29 Score=27.54 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhccC-------CCcceeHHHHHHHHHh
Q 031616 17 AEFQEAFSMLDKDGDGCITFEELASAIKSLDQ---NPTEEELRNMINEVDLD-------GNGTIEFLEFLKLMAT 81 (156)
Q Consensus 17 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~~~~ 81 (156)
..+..+|..+. .+.+.++.++|..+|..... ..+.+.+..++..+-.. ..+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35667787774 44489999999999998652 23566677777654221 2345899999987744
No 162
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=70.62 E-value=7.4 Score=21.20 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccC-------CCcceeHHHHHH
Q 031616 17 AEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLD-------GNGTIEFLEFLK 77 (156)
Q Consensus 17 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~ 77 (156)
+.+..-|+.+ .++.++||..+|.+.|.. +++.-..+++... ..|..+|..|..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5677889888 788999999999987442 1223333333221 236688888764
No 163
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.41 E-value=15 Score=19.98 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVD 63 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 63 (156)
+.+... -..+-.|+.+-+...+...|.++|+..++++++.+.
T Consensus 27 k~~~k~-lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 27 KQMKKQ-LKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHH-HhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 444444 234678999999999999999999999999988763
No 164
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=67.73 E-value=24 Score=21.14 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=37.7
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
+..+|..+..-++...+-.+++.++..+|.....+.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 345666677677778999999999999999999999999998886
No 165
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.19 E-value=7.8 Score=28.51 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEE-LRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
-+.+++.|..+|+.++|+|+..-+...+...+...++.. +..+-..+++..-|.|-..+|......
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 567899999999999999999999999998885555443 444445566666676666666555443
No 166
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=67.00 E-value=52 Score=26.95 Aligned_cols=134 Identities=11% Similarity=0.123 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhCCCCC-CcccHHHHHHHHHH--------cCC----CCCH-HHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 16 IAEFQEAFSMLDKDGD-GCITFEELASAIKS--------LDQ----NPTE-EELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~-g~i~~~e~~~~l~~--------~~~----~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
..-+.++|..++..++ ..+...+....|.. .|. ++-. --+.-++..||..++|.|..-+|...+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 3445677777765543 34455444443321 121 1111 12466789999999999988888887765
Q ss_pred hccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHH-------------HhCCCCCHHHHHHHHHHhCCCCCCCccHHHH
Q 031616 82 KMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMM-------------NLGEKLTDEELEQMILEADSDGDGQVNYEEF 148 (156)
Q Consensus 82 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef 148 (156)
+... ..++.++.+|...-.++.-.+ ...|..++. ++|..--+..+...|. ..++-..|.+..|
T Consensus 499 lck~-~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~--~v~~~pei~~~~f 574 (966)
T KOG4286|consen 499 LCKA-HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQ--FVNNKPEIEAALF 574 (966)
T ss_pred Hhcc-hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHH--hcCCCCcchHHHH
Confidence 5443 345778899999976654443 444444442 2343323344666676 3345567888888
Q ss_pred HHHHH
Q 031616 149 ARMML 153 (156)
Q Consensus 149 ~~~l~ 153 (156)
...+.
T Consensus 575 ~dw~~ 579 (966)
T KOG4286|consen 575 LDWMR 579 (966)
T ss_pred HHHhc
Confidence 87764
No 167
>PRK01844 hypothetical protein; Provisional
Probab=65.16 E-value=21 Score=19.60 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 29 DGDGCITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
..+-.|+.+-+...+...|.++++..++++.+.+
T Consensus 34 k~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 34 QKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3466899999999999999999999999998776
No 168
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.44 E-value=21 Score=19.35 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhccC
Q 031616 35 TFEELASAIKSLDQNPTEEELRNMINEVDLD 65 (156)
Q Consensus 35 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 65 (156)
+..++..++...+..++.+++..++..-+..
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 3456777777777777777777777665443
No 169
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.00 E-value=89 Score=26.38 Aligned_cols=86 Identities=13% Similarity=0.249 Sum_probs=53.6
Q ss_pred hccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcC--CCCCccC-----HHHHHHHHHHhCCCCCHHHHHHHHHH
Q 031616 62 VDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDK--DQDGYIS-----PNELRHVMMNLGEKLTDEELEQMILE 134 (156)
Q Consensus 62 ~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~g~i~-----~~e~~~~~~~~~~~~~~~~~~~~~~~ 134 (156)
+..+..|+|....++..+..-... ..+..+...+-- ++...|. ++.|..++..+ ....+++++|..
T Consensus 157 mqvn~~grip~knI~k~F~~~k~~----KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~k 229 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSADKKE----KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRK 229 (1189)
T ss_pred hcccccccccHHHHHHHhhcCCch----hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHHH
Confidence 456677888877776666433211 234444433321 2223344 34445555444 344789999999
Q ss_pred hCCCCCCCccHHHHHHHHHh
Q 031616 135 ADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 135 ~~~~~~g~i~~~ef~~~l~~ 154 (156)
+..+.-..+|.+++.+++..
T Consensus 230 i~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 230 ISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred hccCCCccccHHHHHHHHhh
Confidence 99888889999999999864
No 170
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=61.21 E-value=75 Score=24.62 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=45.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---c-----cCCCcceeHHHHHHHH
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEV---D-----LDGNGTIEFLEFLKLM 79 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~~~i~~~ef~~~~ 79 (156)
-+|..+..-+++.++...|..+|+..|...+...+..++..+ + ....+.++-+.|..++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 467777555579999999999999999888877777776655 2 2345678888888876
No 171
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=60.84 E-value=18 Score=19.87 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=26.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q 031616 7 AEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD 47 (156)
Q Consensus 7 ~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 47 (156)
.++.++...-..+..++...-+ .+..++.|+..+...+|
T Consensus 29 ~~~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 29 KPEDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred CHHhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 3566777777777777776643 56777777777776665
No 172
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=57.51 E-value=25 Score=23.24 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcc
Q 031616 27 DKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDL 64 (156)
Q Consensus 27 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 64 (156)
..+.+|++..+++...++.-+...+.+++..+...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35789999999999999987777888999888876543
No 173
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.23 E-value=30 Score=21.88 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=31.1
Q ss_pred HHHHhhcCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 94 EAFKVFDKDQDGYISPNELRHVMMNL--GEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 94 ~~f~~~D~~~~g~i~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
.+|.... -||.++..|...+-.-+ .+.++..++..++.....-+...+++-.|...++
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455553 34666666544443322 2445666666666665544455566666665554
No 174
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=57.04 E-value=59 Score=23.36 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCCccCHHHHHHHHHHh---------------CCCCCHHHHHHHHHHhCCC-----CCCCccHHHHHHHHHh
Q 031616 103 QDGYISPNELRHVMMNL---------------GEKLTDEELEQMILEADSD-----GDGQVNYEEFARMMLL 154 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~ 154 (156)
++-.++..+|++++.++ ...+++..+..+.+.+-.| .++.|+.+.|.+++..
T Consensus 214 ~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~ 285 (323)
T PF12987_consen 214 GDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTG 285 (323)
T ss_pred ccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhc
Confidence 66789999999999653 2346888899999887544 3678999999998765
No 175
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=55.92 E-value=44 Score=20.21 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
+..+|..+-.-++..+|-+++..++...|.......+..++..+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344555555556677999999999999999998888888888885
No 176
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=55.81 E-value=62 Score=21.98 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCC
Q 031616 103 QDGYISPNELRHVMMNLG---EKLTDEELEQMILEADSDGDG 141 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g 141 (156)
..|.|+..|+...+.+.. ..++++++....+.+..=+.|
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 336777777777776642 346777777777777654433
No 177
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.61 E-value=51 Score=20.88 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=64.5
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHh
Q 031616 21 EAFSMLDKDGDGCITFEELASAIKS--LDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKV 98 (156)
Q Consensus 21 ~~f~~~d~~~~g~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 98 (156)
-.|+.... +|.+...|...+... -.+.++..++..+......-+...+++..|...+...+....-.+-+..+|..
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67777754 577877776665443 24678888888888887666667788999988887665544333445555665
Q ss_pred hcCCCCCccCHHHHHHHHHH
Q 031616 99 FDKDQDGYISPNELRHVMMN 118 (156)
Q Consensus 99 ~D~~~~g~i~~~e~~~~~~~ 118 (156)
- ..||.++.-|-.-+++.
T Consensus 112 a--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 A--YADGELDESEDHVIWRV 129 (148)
T ss_pred H--HccccccHHHHHHHHHH
Confidence 5 45788888876655554
No 178
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=55.48 E-value=32 Score=21.99 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCC----CC-cccHHHHHHHHHHc----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc---
Q 031616 16 IAEFQEAFSMLDKDG----DG-CITFEELASAIKSL----DQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM--- 83 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~----~g-~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~--- 83 (156)
+..+.+.|+.|-.-+ +| .++-..|..++... |...+..+....|....-..-+.++|++|...+..+.
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R 90 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKR 90 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhh
Confidence 444566666654333 33 67777888888764 3455666677777777555667899999977765443
Q ss_pred -cchhhHHHHHHHHHhhc
Q 031616 84 -KENEAQEELKEAFKVFD 100 (156)
Q Consensus 84 -~~~~~~~~~~~~f~~~D 100 (156)
.....++.+..+...+.
T Consensus 91 ~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 91 FKGKSKEEALDAICQLLA 108 (180)
T ss_pred hcCCCHHHHHHHHHHHHh
Confidence 11233445555655553
No 179
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=55.45 E-value=13 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 104 DGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 104 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
.|+||++++...+.... ++.+.+..++..+.
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 46677777766665333 55566666666554
No 180
>PHA02902 putative IMV membrane protein; Provisional
Probab=55.07 E-value=17 Score=19.34 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.2
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 031616 5 IYAEDVLPEDQIAEFQEAFS 24 (156)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~f~ 24 (156)
-.+...++|+|++++++.+.
T Consensus 48 ~~F~D~lTpDQirAlHrlvT 67 (70)
T PHA02902 48 PLFKDSLTPDQIKALHRLVS 67 (70)
T ss_pred chhhccCCHHHHHHHHHHHh
Confidence 45677899999999998874
No 181
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=55.03 E-value=47 Score=24.27 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=5.3
Q ss_pred ccHHHHHHHH
Q 031616 143 VNYEEFARMM 152 (156)
Q Consensus 143 i~~~ef~~~l 152 (156)
||-+||..++
T Consensus 333 ~t~~ef~~~~ 342 (343)
T TIGR03573 333 ISEEEFWKTV 342 (343)
T ss_pred CCHHHHHHHh
Confidence 5555555543
No 182
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=54.92 E-value=22 Score=20.02 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=20.1
Q ss_pred cccCCCCCHHHHHHHHHHHHhhCCCCCC
Q 031616 5 IYAEDVLPEDQIAEFQEAFSMLDKDGDG 32 (156)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g 32 (156)
-.+...++++|++.+++.+-.- +.++|
T Consensus 46 s~F~D~lTpDQVrAlHRlvTsS-pe~d~ 72 (92)
T PHA02681 46 SSFEDKMTDDQVRAFHALVTSS-PEDDP 72 (92)
T ss_pred chhhccCCHHHHHHHHHHHhCC-CCCCC
Confidence 4567789999999999999765 33343
No 183
>PLN02223 phosphoinositide phospholipase C
Probab=54.89 E-value=88 Score=24.64 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHc---C--CCCCHHHHHHHHHhhccCC--------CcceeHHHHHHHHHh
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSL---D--QNPTEEELRNMINEVDLDG--------NGTIEFLEFLKLMAT 81 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~--~~~~~~~~~~~~~~~d~~~--------~~~i~~~ef~~~~~~ 81 (156)
.+..+|..+ ..+.|.++...+..+|+-+ . ...+.++++.++..+-... .+.++.+.|..++..
T Consensus 17 ~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 455677777 4778999999999988332 2 3455667777766553222 255899999888744
No 184
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=54.66 E-value=45 Score=20.01 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 031616 22 AFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKL 78 (156)
Q Consensus 22 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 78 (156)
.|-.++.-++...+..+++.+|...|.....+.+..++..+ .|+ +.+|.+..
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 44555666777889999999999999999999999999888 343 56666554
No 185
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=54.39 E-value=25 Score=18.63 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=18.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHH
Q 031616 106 YISPNELRHVMMNLGEKLTDEELEQM 131 (156)
Q Consensus 106 ~i~~~e~~~~~~~~~~~~~~~~~~~~ 131 (156)
.|+.++|...++.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47788888888877777777766543
No 186
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=54.25 E-value=16 Score=14.77 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.6
Q ss_pred CCCCCccCHHHH
Q 031616 101 KDQDGYISPNEL 112 (156)
Q Consensus 101 ~~~~g~i~~~e~ 112 (156)
.+++|.|+--++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 344455544443
No 187
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=54.23 E-value=45 Score=19.91 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=31.9
Q ss_pred HhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhccCCCccee
Q 031616 24 SMLDKDGDGCITFEELASAIKS----------LDQNPTEEELRNMINEVDLDGNGTIE 71 (156)
Q Consensus 24 ~~~d~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~~~i~ 71 (156)
+.+|+..+.+||.+++..+.+. .|..++...+.++.......+...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 4578888999999999998875 24556666666666555444333333
No 188
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=54.21 E-value=30 Score=18.52 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q 031616 103 QDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDG 139 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (156)
.++.++..++...+...|..++++.+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3466777778877777777777777777777776553
No 189
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.87 E-value=22 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQM 131 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~ 131 (156)
.+.++.+|..||..+--.++-+++.+++...|+-....-+..+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 4779999999999999999999999999887765544443333
No 190
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=53.82 E-value=42 Score=19.39 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc--cchhhHHHHHHHHHhhcCCCCCc
Q 031616 30 GDGCITFEELASAIKSLD-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM--KENEAQEELKEAFKVFDKDQDGY 106 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~ 106 (156)
-+|.++..|...+-+.+. ..........+...+........++.+|...+.... ....-...+..+|..-- .||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCC
Confidence 367777777655433321 223233333333333222222366777777765542 22222334555565553 3588
Q ss_pred cCHHHHH
Q 031616 107 ISPNELR 113 (156)
Q Consensus 107 i~~~e~~ 113 (156)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8888743
No 191
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.78 E-value=44 Score=19.68 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcC---CCCCccCHHHHHHHHHHh
Q 031616 53 EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDK---DQDGYISPNELRHVMMNL 119 (156)
Q Consensus 53 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~~~e~~~~~~~~ 119 (156)
..++.-|..+.. +|.++...|-.++... ...+-...+|..+-+ -....|+.+|++.++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 345555666644 7888888888887533 222334455555532 124678888888777654
No 192
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.27 E-value=41 Score=22.16 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031616 28 KDGDGCITFEELASAIKSLDQNPTEEELRNMINEVD 63 (156)
Q Consensus 28 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 63 (156)
-+.+|+++.+++...++.-+...+.+.+.++...=+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 478999999999999887666788888888776544
No 193
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=15 Score=27.16 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEE 127 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~ 127 (156)
.+.++++|..+|+.+.|+|+-.-++.++...+...++.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a 346 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPA 346 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHH
Confidence 467999999999999999999999999988874444433
No 194
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=52.76 E-value=34 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=25.2
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 105 GYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 105 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
-.+|.+|+..++..++..++..++-.++..+-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45788888888888888788888877777764
No 195
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=52.59 E-value=26 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031616 14 DQIAEFQEAFSMLDKDGDGCITFEELASAIKS 45 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 45 (156)
.++..+.......|..+.+++|..+++.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 34566777777788888888888888887643
No 196
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=51.21 E-value=6.6 Score=26.23 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHV 115 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~ 115 (156)
....|..+|.|.+|+|+++|+...
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhcc
Confidence 455666666666666666665433
No 197
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=49.78 E-value=33 Score=18.23 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEK 122 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~ 122 (156)
...+++.++.+....++-+|...-...+|.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 3456666665666667777777777777643
No 198
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=49.43 E-value=51 Score=20.64 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCCccCHHHHHHHHHHhC---------CCCCHHHHHHHHHHhCCCCCC-CccHHHHHHH
Q 031616 103 QDGYISPNELRHVMMNLG---------EKLTDEELEQMILEADSDGDG-QVNYEEFARM 151 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g-~i~~~ef~~~ 151 (156)
++..||.+||.+++..-. +.+..+++..+...+...+.+ +++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567899999999987632 346888999999998876655 4998887764
No 199
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=48.06 E-value=78 Score=25.89 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc
Q 031616 90 EELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLLA 155 (156)
Q Consensus 90 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 155 (156)
...+.+|+..-+.+.-.+..+++... ..+++++.++..++...++.|++..|.+.+.++
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 34677888887766667777666544 467889999999988766679999999887654
No 200
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=47.91 E-value=80 Score=20.92 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=20.1
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 101 KDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 101 ~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
.+.+|.+..+++.+....-+..++.+++.++...-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 456688888887777776666667777777776544
No 201
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=47.07 E-value=36 Score=16.74 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 031616 108 SPNELRHVMMNLGEKLTDEEL 128 (156)
Q Consensus 108 ~~~e~~~~~~~~~~~~~~~~~ 128 (156)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888899998888764
No 202
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=46.58 E-value=74 Score=20.14 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHH----------HHhCCCCCCCccHHHHHHHH
Q 031616 112 LRHVMMNLGEKLTDEELEQMI----------LEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~i~~~ef~~~l 152 (156)
+..-+..+|+.++++++..++ ..+-.+..|..+...+..++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 344445668888888887777 22334567888887776653
No 203
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=46.56 E-value=59 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=12.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031616 103 QDGYISPNELRHVMMNLGEKLTDEELEQMI 132 (156)
Q Consensus 103 ~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 132 (156)
.+|.+.++++.+.++.-+..++.+++.++.
T Consensus 30 ~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 30 EEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred CCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 334444444444443322333444444443
No 204
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=46.19 E-value=65 Score=19.35 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=35.0
Q ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 93 KEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 93 ~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
..+|..+...++..+|-+++..++...|.......+..++..+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34455555566678999999999999999888888888888775
No 205
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=45.69 E-value=38 Score=16.61 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 110 NELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 110 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
+|....+..+| .++.++..++..... ...++.++.++...
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 56677777777 567888888887764 34455666665443
No 206
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=44.61 E-value=31 Score=17.42 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q 031616 104 DGYISPNELRHVMMNLGEKLTDEELEQMILEADSD 138 (156)
Q Consensus 104 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (156)
.|.|+..+++..+. ++...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 58888888888763 6777777777777754
No 207
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=67 Score=24.22 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHH
Q 031616 20 QEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFL 76 (156)
Q Consensus 20 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 76 (156)
.++|..+.+- +|.|+-..-+..+-. .+++...+..+|...|.+.+|.++-+||.
T Consensus 447 de~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 447 DEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred Hhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 3445444322 444444433333222 33444455555555555555555555553
No 208
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.39 E-value=1.3e+02 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKS 45 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 45 (156)
.++++.+-+.+|-|++|.|+.+|=-.++++
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 567788888999999999999999998886
No 209
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=44.02 E-value=75 Score=22.41 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.4
Q ss_pred CcceeHHHH
Q 031616 67 NGTIEFLEF 75 (156)
Q Consensus 67 ~~~i~~~ef 75 (156)
||.|+-.|.
T Consensus 69 DG~Vse~Ei 77 (267)
T PRK09430 69 KGRVTEADI 77 (267)
T ss_pred CCCcCHHHH
Confidence 445555443
No 210
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=43.80 E-value=1e+02 Score=20.96 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch-hhH-H
Q 031616 16 IAEFQEAFSMLDKDGDGCITFEELASAIKSLD---QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN-EAQ-E 90 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~-~ 90 (156)
...+.+++...-..+.|.|+..|+...+.... ..++++++......+..-+.| +....|-.........+ ... .
T Consensus 96 a~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~ 174 (223)
T PF04157_consen 96 AVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSK 174 (223)
T ss_dssp HHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-H
T ss_pred HHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhH
Confidence 33455555555555666777777777766532 235566666666666544433 22221111100011111 121 3
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEA 135 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 135 (156)
....+.........|.+|..++..-+. ++..-+.+.+...
T Consensus 175 ~~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 175 DQSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 445566666234459999988876653 5555555555543
No 211
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=43.72 E-value=67 Score=18.83 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 031616 34 ITFEELASAIKSLDQNPTEEELRNMINEVD 63 (156)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 63 (156)
+...+..-++..+...++.+++..+...+-
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~ 49 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELA 49 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHH
Confidence 555666666666666666666666665553
No 212
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=42.98 E-value=46 Score=16.70 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMI 59 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 59 (156)
..+++.+...|...|.. +.+.+..+...+...+| ++...+..=|
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF 48 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWF 48 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCH
Confidence 46899999999999984 67888888888888865 5555555444
No 213
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=42.15 E-value=71 Score=20.15 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 031616 106 YISPNELRHVMMNLGEKLTDEELEQMILEADS 137 (156)
Q Consensus 106 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (156)
..|.+++..+...+..++|++++..++..++.
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 34677888777777777888888888888875
No 214
>COG5562 Phage envelope protein [General function prediction only]
Probab=41.86 E-value=23 Score=22.10 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Q 031616 104 DGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMMLL 154 (156)
Q Consensus 104 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 154 (156)
+|.|...-.+.+..-.. + ..-..+.+....+..|..+|++|++.+-.
T Consensus 54 ~~~Il~~g~k~~~~V~~---~-~n~~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVVGVAE---V-FNTTLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeeccccccceec---c-cCHHHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 45555555444432111 1 22334445555666788888888876644
No 215
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=41.42 E-value=1.3e+02 Score=21.31 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCCCcccHHHHHHHHHHcC--CCCCHHH---HHHHHHhhccCCCcceeHHHHHHHHHhhccchhh-H-HHHHHHHHhhcC
Q 031616 29 DGDGCITFEELASAIKSLD--QNPTEEE---LRNMINEVDLDGNGTIEFLEFLKLMATKMKENEA-Q-EELKEAFKVFDK 101 (156)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~~--~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-~-~~~~~~f~~~D~ 101 (156)
.-+|.++..|.. +.+.+. ..++.++ +..+|..- .....++.+|+..+...+..... . .-+..+|..-=
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~- 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF- 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-
Confidence 558999999988 334321 4455665 45555444 34457888988887665432111 1 11233444442
Q ss_pred CCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHh
Q 031616 102 DQDGYISPNELRHVMMNLG--EKLTDEELEQMILEA 135 (156)
Q Consensus 102 ~~~g~i~~~e~~~~~~~~~--~~~~~~~~~~~~~~~ 135 (156)
-||.++..| ..+++.+. ..++..++..+...+
T Consensus 142 -ADG~l~~~E-~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 142 -ADGSLHPNE-RQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred -hcCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 468899988 44444432 457777777776653
No 216
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=40.89 E-value=63 Score=17.74 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=9.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHh
Q 031616 41 SAIKSLDQNPTEEELRNMINE 61 (156)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~~ 61 (156)
.++..++..-+.+.++.-|..
T Consensus 4 ~ii~~Lh~G~~~e~vk~~F~~ 24 (71)
T PF04282_consen 4 EIIKRLHEGEDPEEVKEEFKK 24 (71)
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 334444444444444444433
No 217
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=40.07 E-value=51 Score=16.44 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMIN 60 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 60 (156)
...+++.+...|+..|.. +.+.+..+...+...+| ++...+..=|.
T Consensus 4 r~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 4 RTRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred CCcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 356889999999999986 56889999999888866 55566655543
No 218
>PRK04387 hypothetical protein; Provisional
Probab=39.55 E-value=74 Score=18.41 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhh
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEV 62 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 62 (156)
-+.+++-.+...|+....--...|+.++|....+.+. .-++..+=+++++.+
T Consensus 11 WsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reF 63 (90)
T PRK04387 11 WSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREF 63 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445555555566555444445566666666655543 444555555555555
No 219
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=39.44 E-value=71 Score=17.85 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCCccHHHHHHHH
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILEADS-DGDGQVNYEEFARMM 152 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~l 152 (156)
-.++++...+. |.+.+.+.+...+...+. +--+.++-+++.+++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 34677777774 566788888888888854 344688888888764
No 220
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.06 E-value=80 Score=18.37 Aligned_cols=88 Identities=13% Similarity=0.235 Sum_probs=51.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHH
Q 031616 17 AEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAF 96 (156)
Q Consensus 17 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 96 (156)
+.+...|..+ ...+...++..+.+.+| ++..+|..+-... .+ +.+.-.+++.
T Consensus 4 ~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~----~~--~~eq~~qmL~---------------- 55 (96)
T cd08315 4 ETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKANE----RV--TREQLYQMLL---------------- 55 (96)
T ss_pred hHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHHC----CC--CHHHHHHHHH----------------
Confidence 4566666665 35677888888888877 6677777765443 11 1333333333
Q ss_pred HhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031616 97 KVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMIL 133 (156)
Q Consensus 97 ~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 133 (156)
.|-...-..=+++.+...|+.++.....+.+...+.
T Consensus 56 -~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 56 -TWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred -HHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 332111123457778888888877766666665543
No 221
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=38.13 E-value=63 Score=16.91 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCc----ccHHHHHHHHHHcCCC
Q 031616 8 EDVLPEDQIAEFQEAFSMLDKDGDGC----ITFEELASAIKSLDQN 49 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~~ 49 (156)
...|++++...++..|... |+ .+..+...+...+|.+
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCCC
Confidence 4679999999999999764 55 7777888888777643
No 222
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=1.3e+02 Score=20.26 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 031616 29 DGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKL 78 (156)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 78 (156)
+=+|+||.++.-..+... .-..++..++... .++.+++.+....
T Consensus 9 DFDGTITl~Ds~~~itdt---f~~~e~k~l~~~v---ls~tiS~rd~~g~ 52 (220)
T COG4359 9 DFDGTITLNDSNDYITDT---FGPGEWKALKDGV---LSKTISFRDGFGR 52 (220)
T ss_pred cCCCceEecchhHHHHhc---cCchHHHHHHHHH---hhCceeHHHHHHH
Confidence 335666666665555431 1122333443333 3445555554333
No 223
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=37.10 E-value=66 Score=16.92 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKS 45 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 45 (156)
++-+++-.+.++| .-++ +...++.+++..+|..
T Consensus 12 l~l~RIh~mLkmf-~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMF-PKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH--GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-cCCC-CCCCCCHHHHHHHHHH
Confidence 4445555555555 2222 3445666666666554
No 224
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=36.68 E-value=89 Score=24.29 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHH
Q 031616 13 EDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEEL 92 (156)
Q Consensus 13 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 92 (156)
.+..+....+|+.+-+.+...++..+++.++..+|......+=-..|..-+.. ...+.|..+...+..-+.+. ..+
T Consensus 481 ~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel~D~---d~v 556 (612)
T COG5069 481 WQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSELVDY---DLV 556 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHhhhhcCh---hhh
Confidence 33445556778887778888999999999999988666555444445433222 12456666666655444333 335
Q ss_pred HHHHHhhcC
Q 031616 93 KEAFKVFDK 101 (156)
Q Consensus 93 ~~~f~~~D~ 101 (156)
+..|..++.
T Consensus 557 ~~~~~~f~d 565 (612)
T COG5069 557 TRGFTEFDD 565 (612)
T ss_pred hhhHHHHHH
Confidence 555555543
No 225
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=35.85 E-value=1.1e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=14.9
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHh-CCCCCHHH
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNL-GEKLTDEE 127 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~-~~~~~~~~ 127 (156)
.+..++++|-. +.|+.+.++.++... |..++...
T Consensus 38 Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Q 72 (122)
T PF06648_consen 38 KLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQ 72 (122)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHH
Confidence 34444544432 334555444444443 23444433
No 226
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.73 E-value=1.6e+02 Score=20.84 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=62.0
Q ss_pred HHHHHHHHHhh-CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch--------
Q 031616 16 IAEFQEAFSML-DKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN-------- 86 (156)
Q Consensus 16 ~~~l~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-------- 86 (156)
...+...|+.+ |+..+..|-++.+..++..+|..+..-....+--.+.-..-+..+.++|+..+..+....
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l 142 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRL 142 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44556666555 444456999999999999999777655444444444455567788888888764432111
Q ss_pred -----------hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHh
Q 031616 87 -----------EAQEELKEAFKVFDKDQDGYISPNELRHVMMNL 119 (156)
Q Consensus 87 -----------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~ 119 (156)
.-...++.+|..-...+-..++.+.-..++.-+
T Consensus 143 ~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll 186 (260)
T KOG3077|consen 143 DFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLL 186 (260)
T ss_pred HHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHH
Confidence 111234444554444444566666655555543
No 227
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=35.69 E-value=1.2e+02 Score=19.36 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDG 30 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~ 30 (156)
..|++++++.|......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 3688899999988888887764
No 228
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=35.64 E-value=72 Score=16.82 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQM 131 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~ 131 (156)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478899999999999999988764
No 229
>PF13551 HTH_29: Winged helix-turn helix
Probab=35.58 E-value=91 Score=17.98 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHHHh
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAI--KSLDQNPTEEELRNMINE 61 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~ 61 (156)
+++++...+.+.+......+.+..+...+...+ ...+..++..-+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 777888877777776544433467777777754 345667777777666654
No 230
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.36 E-value=45 Score=29.90 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 87 EAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKL----TDEELEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 87 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
++-+.+..+|..+|.+..|.|...++..+++.+.+++ .... +.+-..+....+|.|++.+-+-.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFAL 1482 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHH
Confidence 4456789999999999999999999999999864322 1111 223333444566666666555443
No 231
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=35.31 E-value=42 Score=25.61 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q 031616 14 DQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD 47 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 47 (156)
.+...+..++ .+....++.-|.+||...+....
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 3455666777 66677788999999999998644
No 232
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=34.49 E-value=69 Score=17.60 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.5
Q ss_pred CcceeHHHHHHH
Q 031616 67 NGTIEFLEFLKL 78 (156)
Q Consensus 67 ~~~i~~~ef~~~ 78 (156)
.|.+.-+||...
T Consensus 28 ~Gkv~~ee~n~~ 39 (75)
T TIGR02675 28 SGKLRGEEINSL 39 (75)
T ss_pred cCcccHHHHHHH
Confidence 344444444444
No 233
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=34.45 E-value=1.6e+02 Score=21.72 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHH
Q 031616 13 EDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEEL 92 (156)
Q Consensus 13 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 92 (156)
.+++.++..-|+. |.+..-.+--++|......+........+.-+.+.+...=+|.+=|.|...-+... ...+
T Consensus 40 ~~e~~A~l~Efr~-DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~l 112 (357)
T PLN02508 40 MAEFEALLQEFKT-DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT------NPVV 112 (357)
T ss_pred HHHHHHHHHHHHh-CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC------ChHH
Confidence 3444444444442 44444455555555544333222223344555555555667777777754433221 1357
Q ss_pred HHHHHhhcCCC
Q 031616 93 KEAFKVFDKDQ 103 (156)
Q Consensus 93 ~~~f~~~D~~~ 103 (156)
..+|..+.+|.
T Consensus 113 ae~F~lMaRDE 123 (357)
T PLN02508 113 AEIFTLMSRDE 123 (357)
T ss_pred HHHHHHhCchh
Confidence 88888887663
No 234
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=33.71 E-value=96 Score=17.73 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 32 GCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 32 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
-.++-.+|...|+....-.+..+...+-..+|...++.|+.=||--+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 445555555555555444444444455555555555555555544433
No 235
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=33.48 E-value=1e+02 Score=18.02 Aligned_cols=78 Identities=8% Similarity=0.153 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHH
Q 031616 32 GCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNE 111 (156)
Q Consensus 32 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 111 (156)
+.++..+++.+.+.+| +++.++..+-..... + ..+.-.+++..+.... ...| +...
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~--d---~~Eq~~qmL~~W~~~~---------------G~~a--~~~~ 71 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ--D---TAEQKVQLLRAWYQSH---------------GKTG--AYRT 71 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC--C---hHHHHHHHHHHHHHHh---------------CCCc--hHHH
Confidence 3567778888888877 677777776644421 1 2444444444332110 1112 2466
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH
Q 031616 112 LRHVMMNLGEKLTDEELEQMIL 133 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~ 133 (156)
+.+.|+.++.....+.+..++.
T Consensus 72 Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 72 LIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHccchhHHHHHHHHHH
Confidence 6777777776655555555543
No 236
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=33.44 E-value=97 Score=17.68 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=16.9
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILE 134 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 134 (156)
|+.+++..+.+-....++++++..+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3556666666666666777665555433
No 237
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=33.43 E-value=70 Score=17.95 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 031616 38 ELASAIKSLDQNPTEEELRNMIN 60 (156)
Q Consensus 38 e~~~~l~~~~~~~~~~~~~~~~~ 60 (156)
|+..+|+++|..+++++...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 67788999999998887665543
No 238
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=33.36 E-value=1.1e+02 Score=18.46 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred HHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 95 AFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
+|...-.-++..+|-+++..++...|......-+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 333343345567999999999999998888888888877775
No 239
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=33.29 E-value=54 Score=14.73 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=9.5
Q ss_pred CCccCHHHHHHHHHH
Q 031616 104 DGYISPNELRHVMMN 118 (156)
Q Consensus 104 ~g~i~~~e~~~~~~~ 118 (156)
.|.|+.+++..++..
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777776666654
No 240
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=32.80 E-value=1.8e+02 Score=21.11 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHH
Q 031616 14 DQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELK 93 (156)
Q Consensus 14 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 93 (156)
++++++..-|+. |.+..-.+--++|......+........+.-+.+.+...=+|.+-|.|...-+... ...+.
T Consensus 25 ~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~la 97 (323)
T cd01047 25 EEFEAMLAEFKA-DYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT------NPVVA 97 (323)
T ss_pred HHHHHHHHHHHh-CcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC------CcHHH
Confidence 444555444442 45555555556665544433223333445555555555556666666654433222 13477
Q ss_pred HHHHhhcCC
Q 031616 94 EAFKVFDKD 102 (156)
Q Consensus 94 ~~f~~~D~~ 102 (156)
.+|..+.+|
T Consensus 98 e~F~lMaRD 106 (323)
T cd01047 98 ELFRLMARD 106 (323)
T ss_pred HHHHHHhhh
Confidence 788888666
No 241
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=32.79 E-value=69 Score=18.52 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=4.3
Q ss_pred CCCCCccHHHH
Q 031616 138 DGDGQVNYEEF 148 (156)
Q Consensus 138 ~~~g~i~~~ef 148 (156)
.+.++|+..-|
T Consensus 69 ~~~~~Ip~~~~ 79 (90)
T PF02337_consen 69 QGPEKIPIQAF 79 (90)
T ss_dssp CSTTTS-CHHH
T ss_pred hCCCCCChhHH
Confidence 33445544433
No 242
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=32.54 E-value=1.5e+02 Score=19.98 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCHHHHH---HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 10 VLPEDQIA---EFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 10 ~~~~~~~~---~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
.+|..-.+ .+++.+..+...+-..++.+|+..++. .....+++=|+.+
T Consensus 6 ~IP~AT~kRL~~YyR~le~l~a~~v~rvsS~els~~~~-----vdsatIRrDfSYF 56 (211)
T COG2344 6 KIPKATAKRLPLYYRVLERLHASGVERVSSKELSEALG-----VDSATIRRDFSYF 56 (211)
T ss_pred cCCHHHHHHhHHHHHHHHHHHHcCCceecHHHHHHHhC-----CCHHHHhhhhHHH
Confidence 35555544 456777777789999999999998854 4455555555544
No 243
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=32.35 E-value=1.6e+02 Score=21.66 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCC
Q 031616 28 KDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKD 102 (156)
Q Consensus 28 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 102 (156)
.+..-.+--++|......+........+.-+.+.+...=+|.+=|.|...-+... ...+..+|..+.+|
T Consensus 54 yNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~------nP~lae~F~lMaRD 122 (351)
T CHL00185 54 YNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK------NPLLAEGFLLMSRD 122 (351)
T ss_pred ccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC------CcHHHHHHHHHhhh
Confidence 3333344444444433322222222233444444444445555555543333211 13467777777665
No 244
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=32.24 E-value=66 Score=19.31 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=6.9
Q ss_pred CccHHHHHHHHHh
Q 031616 142 QVNYEEFARMMLL 154 (156)
Q Consensus 142 ~i~~~ef~~~l~~ 154 (156)
+++|++|..-++.
T Consensus 98 G~s~~~~r~~ir~ 110 (118)
T PF09312_consen 98 GISYEEYREQIRK 110 (118)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4677777666554
No 245
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.10 E-value=1.2e+02 Score=18.14 Aligned_cols=30 Identities=7% Similarity=0.371 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
||-+++.+++...|..+....+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999988888875
No 246
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=32.06 E-value=58 Score=14.70 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.0
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 031616 106 YISPNELRHVMMNLGEKL 123 (156)
Q Consensus 106 ~i~~~e~~~~~~~~~~~~ 123 (156)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467778888888777544
No 247
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=31.99 E-value=1e+02 Score=17.39 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCcccHHHHHHHHHHcCC--CCCH---HHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCC
Q 031616 31 DGCITFEELASAIKSLDQ--NPTE---EELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDG 105 (156)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~--~~~~---~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 105 (156)
+|.++..|...+.+.+.. .++. ..+...+...-.. ..+...+............-...+..++.... .||
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~--aDG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVAL--ADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcc
Confidence 677888877766554321 1122 2333333333211 22344444444333222222344555566663 458
Q ss_pred ccCHHHHH
Q 031616 106 YISPNELR 113 (156)
Q Consensus 106 ~i~~~e~~ 113 (156)
.++..|..
T Consensus 88 ~~~~~E~~ 95 (104)
T cd07177 88 ELDPEERA 95 (104)
T ss_pred CCCHHHHH
Confidence 88877743
No 248
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=31.93 E-value=91 Score=22.52 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCC
Q 031616 34 ITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKD 102 (156)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 102 (156)
-+..+=....+..+.....+.+..-...+|.+.+-.+.=+-|.+++...++-...+..++..|..|-.-
T Consensus 60 ~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~I 128 (335)
T KOG0113|consen 60 ETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPI 128 (335)
T ss_pred cchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcc
Confidence 344444444444444444555777788888888877776778877766666666677888888888543
No 249
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=31.20 E-value=1.7e+02 Score=22.84 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh---CC-----CCCCCccHHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEA---DS-----DGDGQVNYEEFARMML 153 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~g~i~~~ef~~~l~ 153 (156)
-..+|..+-...++.+++..|-.+|++.|+.-++.-+..+|..+ +. ..-+.++.+-|.+++.
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 34467777555568999999999999999777666666665443 32 2234578888877764
No 250
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=30.75 E-value=1.8e+02 Score=19.93 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=40.4
Q ss_pred CcccCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH--HHHcCCCCCHHHHHHHHHhh
Q 031616 4 NIYAEDVLPEDQIAEFQEAFSMLDKDGDGCITFEELASA--IKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~--l~~~~~~~~~~~~~~~~~~~ 62 (156)
..+++..+++.+++-+++.....-...+..+-...+... ++..+.++...+++.++..+
T Consensus 86 ~SkmaT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf 146 (235)
T KOG4718|consen 86 DSKMATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKF 146 (235)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345678899999999988888775553444444443332 34456788888888887766
No 251
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=30.58 E-value=1.7e+02 Score=19.73 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHcCC-CCCHHHHHHHHHhh----ccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCcc
Q 031616 33 CITFEELASAIKSLDQ-NPTEEELRNMINEV----DLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYI 107 (156)
Q Consensus 33 ~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 107 (156)
.+...++..+|..+.. .+.......+-..+ |.-+.+.++.++|+.+....+.-......+...--.+..+.+|.+
T Consensus 64 ~~~Qk~~S~~l~~lW~~dp~k~~W~l~ak~ys~iRd~~gk~~~~L~~Fl~~~~p~~gi~~p~~YL~~~Gw~l~~~~~g~~ 143 (201)
T PF04769_consen 64 PLPQKELSGILTKLWEKDPFKNKWSLMAKAYSFIRDQLGKDKAPLDQFLAFACPLIGIIPPEDYLEQLGWQLSQNEEGTI 143 (201)
T ss_pred CcCHHHHHHHHHHHHhCCccHhHHHHHhhhhhhhccccccccCCHHHHHHHhhhhcCCCCHHHHHHHcCCeEeeCCCCCE
Confidence 3566677777776643 33333222222222 222346889999999998887766665556655555556666666
Q ss_pred CHH
Q 031616 108 SPN 110 (156)
Q Consensus 108 ~~~ 110 (156)
+..
T Consensus 144 ~l~ 146 (201)
T PF04769_consen 144 TLE 146 (201)
T ss_pred EEE
Confidence 553
No 252
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.48 E-value=2.2e+02 Score=23.17 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccch-------hhHHHHHHHHHhhcCCCCCc
Q 031616 34 ITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKEN-------EAQEELKEAFKVFDKDQDGY 106 (156)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-------~~~~~~~~~f~~~D~~~~g~ 106 (156)
++.+++. .....-+..++.+|..+|. .+|.++-+++...+.....-. ...+....++...|.+..|+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5666666 2222334456666677765 566666666655543322111 11233455677777777888
Q ss_pred cCHHHHHHHHHH
Q 031616 107 ISPNELRHVMMN 118 (156)
Q Consensus 107 i~~~e~~~~~~~ 118 (156)
+...++..++..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 888887777764
No 253
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.29 E-value=83 Score=20.80 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMI 132 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 132 (156)
.+.++.+|.-||...--..+.+++.+++...++.....-+..++
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 46799999999998888899999999998777655554444443
No 254
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.01 E-value=2.6e+02 Score=21.55 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=60.9
Q ss_pred CCCCcccHHHHHHHHHHc---C-CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCC
Q 031616 29 DGDGCITFEELASAIKSL---D-QNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQD 104 (156)
Q Consensus 29 ~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 104 (156)
.|+...+.+||+.+.... + ..+..+.++.+-+.+|-+.+|.|+.+|=-.+++.-+.-.+....=.+. |.. .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~---fH~-dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEK---FHG-DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhh---ccC-Cc
Confidence 455567777776654322 2 445667788899999999999999887555655443322221112223 333 35
Q ss_pred CccCHHHHHHHHHHhC-CCCCHHHHHHH
Q 031616 105 GYISPNELRHVMMNLG-EKLTDEELEQM 131 (156)
Q Consensus 105 g~i~~~e~~~~~~~~~-~~~~~~~~~~~ 131 (156)
..|+.+++...+.... .+++.+.....
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqW 143 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQW 143 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHH
Confidence 7899999888876543 45555554443
No 255
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=29.27 E-value=1.7e+02 Score=21.72 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 22 AFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 22 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
....+|+.+.|.++.--.+.+|..+....-...++.+|..+. +..|.+.+-.|..++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 345567777777777777777776655555666777777773 3345544444444443
No 256
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=28.98 E-value=3.3e+02 Score=22.80 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhc------------cc
Q 031616 18 EFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKM------------KE 85 (156)
Q Consensus 18 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~------------~~ 85 (156)
.+.-.++.||+..+|.|..-+|+-.+-.++.....+.+..+|......+.. ++-..|-.++.... ..
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 345677899999999999999999888888777788888999888544433 33455555543321 11
Q ss_pred hhhHHHHHHHHHhhcCCCCCccCHHHHHHHH
Q 031616 86 NEAQEELKEAFKVFDKDQDGYISPNELRHVM 116 (156)
Q Consensus 86 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~ 116 (156)
...+..++..|... ++.-.|....|..++
T Consensus 550 sNvepsvrsCF~~v--~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 550 SNIEPSVRSCFQFV--NNKPEIEAALFLDWM 578 (966)
T ss_pred CCCChHHHHHHHhc--CCCCcchHHHHHHHh
Confidence 12234567777733 344566666666555
No 257
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=28.06 E-value=1.8e+02 Score=21.48 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKE 94 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 94 (156)
++.++..-|+. |.+..-.+--++|...+..+........+.-+.+.+...=+|.+=|.|...-+... ...+..
T Consensus 46 e~~A~l~E~r~-DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~lae 118 (355)
T PRK13654 46 ELDAILEEMRA-DYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR------NPLLAE 118 (355)
T ss_pred HHHHHHHHHHh-CcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc------CcHHHH
Confidence 33333333332 33433444444444433332222222334444444444445555555543332211 134677
Q ss_pred HHHhhcCC
Q 031616 95 AFKVFDKD 102 (156)
Q Consensus 95 ~f~~~D~~ 102 (156)
+|..+.+|
T Consensus 119 ~F~lMaRD 126 (355)
T PRK13654 119 LFQLMARD 126 (355)
T ss_pred HHHHHhhh
Confidence 77777665
No 258
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=27.81 E-value=1.3e+02 Score=17.22 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILE 134 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 134 (156)
|+.+++..+.+-....++++++..+...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6667777777777777777765555433
No 259
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.45 E-value=92 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 031616 34 ITFEELASAIKSLDQNPTEEELRNMINEV 62 (156)
Q Consensus 34 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 62 (156)
+|.+||.+.|+..-..++.++.+++.+.|
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778888777765667777777766655
No 260
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=2.2e+02 Score=19.66 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHhh------cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Q 031616 90 EELKEAFKVF------DKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDG 141 (156)
Q Consensus 90 ~~~~~~f~~~------D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 141 (156)
.+++++++.+ |+...+.-+..-+..+-++.+. +|++...+-+..+. ++||
T Consensus 114 ~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~a-LTD~~sreN~ekYG-~PDG 169 (230)
T KOG0721|consen 114 KEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQA-LTDKKSRENWEKYG-NPDG 169 (230)
T ss_pred HHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHH-hcchhhHHHHHHhC-CCCC
Confidence 4455555554 4444444444444444444443 56667777777776 4555
No 261
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=26.74 E-value=61 Score=15.58 Aligned_cols=15 Identities=7% Similarity=0.421 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHh
Q 031616 11 LPEDQIAEFQEAFSM 25 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~ 25 (156)
+..++...|+.+|+.
T Consensus 2 Ik~eER~aLEAMFNL 16 (41)
T PF12426_consen 2 IKTEERSALEAMFNL 16 (41)
T ss_pred cchhHHHHHHHHhce
Confidence 456777888888864
No 262
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=26.32 E-value=1.3e+02 Score=16.95 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 031616 120 GEKLTDEELEQMILEADSDGDGQVNYEEFARMM 152 (156)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l 152 (156)
|..+.++..+.+-+.+.......|+++|++.+-
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 334444444444444444444456666665543
No 263
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=26.00 E-value=66 Score=20.27 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC
Q 031616 8 EDVLPEDQIAEFQEAFSMLDK 28 (156)
Q Consensus 8 ~~~~~~~~~~~l~~~f~~~d~ 28 (156)
...+++++++.++..|+..-.
T Consensus 8 ~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 8 SAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred HcCCCHHHHHHHHHHHHHHhc
Confidence 347999999999999987644
No 264
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.76 E-value=1.9e+02 Score=19.45 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q 031616 107 ISPNELRHVMMNLGEKLTDEELEQMILEADSDGD 140 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (156)
-..+|+..+++..| +++++.+.+.+.+.++++
T Consensus 80 ~e~~el~~iy~~~G--l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG--LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCch
Confidence 34447788888776 667777777777666554
No 265
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=25.72 E-value=83 Score=20.97 Aligned_cols=44 Identities=14% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMI 132 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 132 (156)
.+.++.+|.-||...--..+.+++.+++...++-....-+..++
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 46799999999998888889999999997766544444444443
No 266
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=25.20 E-value=2.2e+02 Score=19.13 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
+++.+.+..-.+++...+.=..+.+...|.+-+--.-...+.+-+..++....+.-.|+.|...+
T Consensus 120 rl~~iL~~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~f 184 (194)
T PF07199_consen 120 RLSKILKHITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCF 184 (194)
T ss_pred HHHHHHHHHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHH
Confidence 34444444455555555555555555555554422223344444444444333334444444433
No 267
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=25.18 E-value=1.2e+02 Score=16.03 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=7.4
Q ss_pred cCHHHHHHHHHHhCC
Q 031616 107 ISPNELRHVMMNLGE 121 (156)
Q Consensus 107 i~~~e~~~~~~~~~~ 121 (156)
|.++++...+...|.
T Consensus 25 I~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 25 INLEELHAWLKASGI 39 (64)
T ss_pred ccHHHHHHHHHHcCC
Confidence 455555555554443
No 268
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.08 E-value=1.4e+02 Score=16.78 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHH--------------HHHHHHHhCCCCCC-CccHHHHHHHHHh
Q 031616 107 ISPNELRHVMMNLGEKLTDEE--------------LEQMILEADSDGDG-QVNYEEFARMMLL 154 (156)
Q Consensus 107 i~~~e~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g-~i~~~ef~~~l~~ 154 (156)
|+..+++.+.+.+| +++.+ ...++..+-..... .-+++..+..|+.
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 44555555555555 33333 44444444432222 5666666666554
No 269
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=24.92 E-value=1.7e+02 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc
Q 031616 10 VLPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSL 46 (156)
Q Consensus 10 ~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~ 46 (156)
.+++.|...+.-+|+..|.++---|+.+++..+|+-+
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 5788899999999999999998899999999998865
No 270
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.91 E-value=2.1e+02 Score=19.79 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=33.5
Q ss_pred HhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 97 KVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 97 ~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
...=.+++|.+....+.+.+..+.-.++..++..+-+.+.
T Consensus 158 ~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred EEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 3334578999999999999999999999999998876654
No 271
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=24.78 E-value=1.5e+02 Score=17.23 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031616 106 YISPNELRHVMMNLGEKLTDEELEQMILEA 135 (156)
Q Consensus 106 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 135 (156)
.|+.+++.++.+-....+++++...+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467777777777666777777766555444
No 272
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=2.3e+02 Score=21.55 Aligned_cols=57 Identities=30% Similarity=0.399 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHH
Q 031616 91 ELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFAR 150 (156)
Q Consensus 91 ~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~ 150 (156)
.+..+|-.+.. -+|+|+-.--+..+. +..+.++.+-.+++..|.|.||-++-+||.-
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 37778888754 468888876666554 4457889999999999999999999999974
No 273
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=24.56 E-value=74 Score=16.74 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=8.8
Q ss_pred HhhCCCCCCcccHHHHHH
Q 031616 24 SMLDKDGDGCITFEELAS 41 (156)
Q Consensus 24 ~~~d~~~~g~i~~~e~~~ 41 (156)
..++.+++|+|+...+..
T Consensus 22 ~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHCTTTTTBEEHHHHTT
T ss_pred HHHHhcCCCcEeHHHHHc
Confidence 333444555555555444
No 274
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=24.19 E-value=1.5e+02 Score=16.93 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=34.8
Q ss_pred ceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031616 69 TIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMI 132 (156)
Q Consensus 69 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 132 (156)
.+++.+++.+ .+...++....=..+-+.+- =|+.+-.+|.+.+..+| ++.+++..++
T Consensus 30 ~it~~dL~~~--GL~g~~~s~~rR~~l~~~L~---iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGGPDSKERREKLGEYLG---IGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHC--CCCCCccHHHHHHHHHHHHC---CCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 4788887665 23233333333344445553 38888888888888777 6777776654
No 275
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=24.09 E-value=93 Score=14.46 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCCCCCCc
Q 031616 123 LTDEELEQMILEADSDGDGQV 143 (156)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~g~i 143 (156)
.+++++..++..+..+++|..
T Consensus 13 cs~edL~~L~~~Lt~dkdG~~ 33 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGKK 33 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCCc
Confidence 567788888888777777753
No 276
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=23.83 E-value=3.1e+02 Score=20.32 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=25.1
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHHhhcc
Q 031616 26 LDKDGDGCITFEELASAIKSLDQNPT----------EEELRNMINEVDL 64 (156)
Q Consensus 26 ~d~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~d~ 64 (156)
.+.++.+.++..+...+|..++.+.. ..++..++..+..
T Consensus 134 ~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~ 182 (342)
T cd07894 134 RKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDK 182 (342)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHH
Confidence 33444668889999999988765432 2456666666543
No 277
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.45 E-value=2.8e+02 Score=20.39 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHH--HcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHH
Q 031616 38 ELASAIK--SLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHV 115 (156)
Q Consensus 38 e~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~ 115 (156)
.|...+. ++|+.....++-... +.|.++.+|-+..+... ........+..+++.++ ||.+||.++
T Consensus 275 ~~~~y~~~~KfG~~~~~~~~s~~I------R~G~itReeal~~v~~~-d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 275 IFHDYLKYLKFGFGRATDHASIDI------RSGRITREEAIELVKEY-DGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred HHHHHHHHhhcCCCcCchHHHHHH------HcCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 3544443 456554444333322 26889999988888663 22333466888888885 566777665
Q ss_pred H
Q 031616 116 M 116 (156)
Q Consensus 116 ~ 116 (156)
+
T Consensus 342 ~ 342 (343)
T TIGR03573 342 V 342 (343)
T ss_pred h
Confidence 4
No 278
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=23.45 E-value=1.9e+02 Score=17.66 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 031616 104 DGYISPNELRHVMMNLGEKLTDEELEQMILEAD 136 (156)
Q Consensus 104 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (156)
.|.++.+++..-+..-+..++..++..++..+.
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~~ 58 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNALK 58 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 477888888776665566677777766665543
No 279
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.24 E-value=2e+02 Score=17.98 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=5.5
Q ss_pred HHHHHcCCCCCHH
Q 031616 41 SAIKSLDQNPTEE 53 (156)
Q Consensus 41 ~~l~~~~~~~~~~ 53 (156)
..|+..|...+.+
T Consensus 6 ~~l~~~glr~T~q 18 (148)
T PRK09462 6 TALKKAGLKVTLP 18 (148)
T ss_pred HHHHHcCCCCCHH
Confidence 3344444444433
No 280
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=23.24 E-value=1.6e+02 Score=16.85 Aligned_cols=48 Identities=6% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHH
Q 031616 31 DGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMA 80 (156)
Q Consensus 31 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 80 (156)
.|.|+..+...++.......+...+..++..+.. .|.-.|.-|+..+.
T Consensus 28 ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~~--rG~~~f~aFLeSLE 75 (86)
T cd08809 28 CKVLNSDDEEQVLNDPSLVIRKRKVGVLLDILQR--TGLKGYEAFLESLE 75 (86)
T ss_pred hCCCChhhHHHHHcCcccchHHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 5677777777777665555556666666666633 45566666766654
No 281
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=1.6e+02 Score=16.81 Aligned_cols=51 Identities=10% Similarity=0.234 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhh
Q 031616 12 PEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLD-QNPTEEELRNMINEV 62 (156)
Q Consensus 12 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 62 (156)
+-+++..+...|+....-=.+.++..+|....+.+. ..++..+-++++..+
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~F 63 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDF 63 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHH
Confidence 344455555555544433345556666655555432 334444555555555
No 282
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=23.01 E-value=1.1e+02 Score=19.53 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.9
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCC
Q 031616 26 LDKDGDGCITFEELASAIKSLDQN 49 (156)
Q Consensus 26 ~d~~~~g~i~~~e~~~~l~~~~~~ 49 (156)
++.....+|.++.+..+|..+|+.
T Consensus 59 c~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 59 CNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HhHHhcccCCHHHHHHHHHHcchH
Confidence 344566777788787777777765
No 283
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=22.67 E-value=1.2e+02 Score=15.40 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031616 30 GDGCITFEELASAIKSLDQNPTEEELRNMIN 60 (156)
Q Consensus 30 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 60 (156)
..|.|+..||..-+.......+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 4799999999988877666666667666653
No 284
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=22.60 E-value=48 Score=18.59 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccC
Q 031616 58 MINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYIS 108 (156)
Q Consensus 58 ~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 108 (156)
++..+..+..+.++..+....+. ..+...+..++..+.. -|.|+
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~-----~~d~~~~~ri~~FL~~--~G~IN 85 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK-----GIDVNKIRRIYDFLER--WGLIN 85 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT-----SSSHHHHHHHHHHHHH--TTSSS
T ss_pred HHHHHHHCCCCcccHHHHHHHcc-----ccCHHHHHHHHHHHHH--cCccC
Confidence 34444455667777777655554 1122446667776643 35554
No 285
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.53 E-value=2.3e+02 Score=18.41 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031616 89 QEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEA 135 (156)
Q Consensus 89 ~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 135 (156)
...+..++..+-..+...++..+|...+ .+|+.++++++......+
T Consensus 84 ~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 84 NLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 3567777777766555678888888765 577888999988877665
No 286
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=22.51 E-value=1.3e+02 Score=15.61 Aligned_cols=53 Identities=13% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeH
Q 031616 11 LPEDQIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEF 72 (156)
Q Consensus 11 ~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~ 72 (156)
+++.....|+.+|..-. +.+.+...++...|. .+..-+..++..+.. .|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEe
Confidence 45556666777777664 677888888777654 455666666666633 344443
No 287
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=22.24 E-value=2.2e+02 Score=20.83 Aligned_cols=81 Identities=11% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHhhccchhhHHHHHH
Q 031616 15 QIAEFQEAFSMLDKDGDGCITFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMATKMKENEAQEELKE 94 (156)
Q Consensus 15 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 94 (156)
++.++..-|+. |.+..-.+--++|......+........+.-+.+.+...=+|.+-|.|...-+.. ....+..
T Consensus 36 e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~------~~P~lae 108 (337)
T TIGR02029 36 EWDAMLAEMKA-DYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN------RDPVVAE 108 (337)
T ss_pred HHHHHHHHHHh-CccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC------CChHHHH
Confidence 33444333332 3343334444444443322221222223444444444444555555554333221 1134677
Q ss_pred HHHhhcCC
Q 031616 95 AFKVFDKD 102 (156)
Q Consensus 95 ~f~~~D~~ 102 (156)
+|..+.+|
T Consensus 109 ~F~~MaRD 116 (337)
T TIGR02029 109 LFQLMARD 116 (337)
T ss_pred HHHHHhhh
Confidence 77777665
No 288
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=22.08 E-value=2.2e+02 Score=18.02 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 031616 9 DVLPEDQIAEFQEAFSMLDKDGDGCITFEELAS 41 (156)
Q Consensus 9 ~~~~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~ 41 (156)
++++++++++..+.+...-.++.|..+...-..
T Consensus 98 Eh~~~~~i~~~~~~~e~~a~~~~g~~~~~~~~~ 130 (141)
T COG5478 98 EHLKPEEIEEIRDRLEDEAGTGDGVPTSVAAFA 130 (141)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 466777777777777766666666555544333
No 289
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=22.06 E-value=2.2e+02 Score=19.41 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=41.1
Q ss_pred CCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 031616 65 DGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILEADS 137 (156)
Q Consensus 65 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (156)
+..+.+....|+..+....+. .+ .+-.|.+|..+.+++...++..+..++.+.+..+...-++
T Consensus 28 ~~~~~~~~SK~lS~vLRH~p~---------~~-gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 28 NEKERVKLSKFLSGVLRHFPE---------AI-GLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred CcchhhhHHHHHHHHHhcChH---------Hc-CeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 334455555666665443221 11 1224677999999999999998888888888877766553
No 290
>PHA02105 hypothetical protein
Probab=21.98 E-value=1.4e+02 Score=15.64 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHhhccCCC--cceeHHHHHHHH
Q 031616 33 CITFEELASAIKSL---DQNPTEEELRNMINEVDLDGN--GTIEFLEFLKLM 79 (156)
Q Consensus 33 ~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--~~i~~~ef~~~~ 79 (156)
.++.++|..++... ..++..+-+.++-..+...+- -.++|+||-..+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 36777888877653 244545545555444444333 246788876554
No 291
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.68 E-value=4e+02 Score=20.86 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 031616 92 LKEAFKVFDKDQDGYISPNELRHVMMNLGEKLTDEELEQMILE 134 (156)
Q Consensus 92 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 134 (156)
.+.++... ....|.+..+.|..++....+....+.+.++...
T Consensus 226 A~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 226 ARELYKEH-RAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ 267 (625)
T ss_pred HHHHHHHH-HHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh
Confidence 44444444 3345888888888777766555555555555443
No 292
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.65 E-value=1e+02 Score=13.98 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHcCCCC
Q 031616 33 CITFEELASAIKSLDQNP 50 (156)
Q Consensus 33 ~i~~~e~~~~l~~~~~~~ 50 (156)
.++..|+...++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 355667777777666443
No 293
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.52 E-value=19 Score=16.00 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=8.0
Q ss_pred HHHhhcCCCCCccCHH
Q 031616 95 AFKVFDKDQDGYISPN 110 (156)
Q Consensus 95 ~f~~~D~~~~g~i~~~ 110 (156)
+...-|.|++-.|+++
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 3344455555555544
No 294
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=21.33 E-value=1.4e+02 Score=15.63 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhCCCC
Q 031616 16 IAEFQEAFSMLDKDG 30 (156)
Q Consensus 16 ~~~l~~~f~~~d~~~ 30 (156)
+.-+..++..++...
T Consensus 9 l~Lve~LwdSL~~~~ 23 (63)
T TIGR02574 9 IQLVEDIWDSIAAEA 23 (63)
T ss_pred HHHHHHHHHHhccCc
Confidence 444567777776443
No 295
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=21.29 E-value=2.6e+02 Score=19.46 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCCcceeHHHHHHHHHhhccchhhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhC----CCCCHHHHHHHHHHh
Q 031616 65 DGNGTIEFLEFLKLMATKMKENEAQEELKEAFKVFDKDQDGYISPNELRHVMMNLG----EKLTDEELEQMILEA 135 (156)
Q Consensus 65 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~----~~~~~~~~~~~~~~~ 135 (156)
....+|+..+....+...+.... ...+...+..|= .|.++..||...+..+- ..+.+.-+..++...
T Consensus 4 ~~~~Ridl~~lk~~l~~~LG~~~-~~~Y~~~l~~fl---~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na 74 (252)
T PF12767_consen 4 QQNSRIDLEELKSQLQKRLGPDR-WKKYFQSLKRFL---SGKLSKEEFDKECRRILGRENVHLHNQLILSILKNA 74 (252)
T ss_pred CcccccCHHHHHHHHHHHHChHH-HHHHHHHHHHHH---HhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 35678888888888776655322 244555665552 48999999999887752 334455555555444
No 296
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=21.25 E-value=2.6e+02 Score=18.54 Aligned_cols=67 Identities=10% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHhhccCCCc--ceeHHHHHHHHHhhc-cch-hhHHHHHHHHHhhcCCCCCccCHHHHHHHHHHhCCC
Q 031616 55 LRNMINEVDLDGNG--TIEFLEFLKLMATKM-KEN-EAQEELKEAFKVFDKDQDGYISPNELRHVMMNLGEK 122 (156)
Q Consensus 55 ~~~~~~~~d~~~~~--~i~~~ef~~~~~~~~-~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~ 122 (156)
+..+|..+-. ..| .++.+.|+..+.... ... ..+.....+=..+-....-.||+.||..++.++|+.
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 4445555533 445 678888877665543 111 111222222222333446789999999999888854
No 297
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=21.15 E-value=1.1e+02 Score=19.52 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcc
Q 031616 12 PEDQIAEFQEAFSMLDKDGDGCI 34 (156)
Q Consensus 12 ~~~~~~~l~~~f~~~d~~~~g~i 34 (156)
+..++.+++++|..++.+.++.-
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccCc
Confidence 56788999999999988765543
No 298
>PHA02771 hypothetical protein; Provisional
Probab=21.08 E-value=1.9e+02 Score=16.78 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHHh
Q 031616 35 TFEELASAIKSLDQNPTEEELRNMINEVDLDGNGTIEFLEFLKLMAT 81 (156)
Q Consensus 35 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 81 (156)
..++++.++..+-...+-.++..+| +..-.|+.+||..+...
T Consensus 2 ~f~~lK~ii~~fF~d~~i~El~L~F-----~~~l~ite~ey~ELi~n 43 (90)
T PHA02771 2 EFEELKSIIDKFFQDQTIIRINLMF-----NKEIIVSYNQFEEIIKD 43 (90)
T ss_pred ChHHHHHHHHHHhcccchHHhhhhc-----CCCeEecHHHHHHHHcC
Confidence 3556666666654444444444444 33456777777776643
No 299
>PRK08181 transposase; Validated
Probab=21.01 E-value=2.8e+02 Score=19.60 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=22.1
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 031616 105 GYISPNELRHVMMNLGEKLTDEELEQMILEADSDGDGQVNYEEFARMML 153 (156)
Q Consensus 105 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~ 153 (156)
..|+.+.+...++.+..+--.+.+.+.... -..+.++|.+|+..|.
T Consensus 5 ~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~---a~~~~~~~~e~L~~ll 50 (269)
T PRK08181 5 NVIDEARLGLLLNELRLPTIKTLWPQFAEQ---ADKEGWPAARFLAAIA 50 (269)
T ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHH---HhhcCCCHHHHHHHHH
Confidence 455666666666665533222222222222 2234566666666553
No 300
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=20.49 E-value=1.9e+02 Score=16.68 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.3
Q ss_pred eeHHHHHHHHHh
Q 031616 70 IEFLEFLKLMAT 81 (156)
Q Consensus 70 i~~~ef~~~~~~ 81 (156)
|+.++|+.....
T Consensus 34 V~r~~ll~~Y~~ 45 (88)
T PF05256_consen 34 VDREELLDAYRR 45 (88)
T ss_dssp EEHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 444444444433
No 301
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=20.40 E-value=1e+02 Score=15.98 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHhhccCCCcceeHHHHHHHH
Q 031616 58 MINEVDLDGNGTIEFLEFLKLM 79 (156)
Q Consensus 58 ~~~~~d~~~~~~i~~~ef~~~~ 79 (156)
++..+...++|..+|+.+..+.
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LA 40 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLA 40 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhh
Confidence 5666777888889998877654
No 302
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.36 E-value=1.1e+02 Score=20.64 Aligned_cols=25 Identities=48% Similarity=0.628 Sum_probs=20.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHc
Q 031616 22 AFSMLDKDGDGCITFEELASAIKSL 46 (156)
Q Consensus 22 ~f~~~d~~~~g~i~~~e~~~~l~~~ 46 (156)
+...+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3447899999999999999987754
No 303
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.27 E-value=1.3e+02 Score=14.77 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=18.2
Q ss_pred CCccC-HHHHHHHHHHhCCCCCHHHHHHHHHH
Q 031616 104 DGYIS-PNELRHVMMNLGEKLTDEELEQMILE 134 (156)
Q Consensus 104 ~g~i~-~~e~~~~~~~~~~~~~~~~~~~~~~~ 134 (156)
.|.|+ ...+-..+...|..++++.++.+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45665 33344444555777777777776654
No 304
>PRK10945 gene expression modulator; Provisional
Probab=20.17 E-value=1.7e+02 Score=16.09 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=7.8
Q ss_pred CccCHHHHHHHHHHh
Q 031616 105 GYISPNELRHVMMNL 119 (156)
Q Consensus 105 g~i~~~e~~~~~~~~ 119 (156)
..++-.|+..+..+.
T Consensus 33 ~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 33 YELSDDELAVFYSAA 47 (72)
T ss_pred ccCCHHHHHHHHHHH
Confidence 344445666555543
Done!