Query 031617
Match_columns 156
No_of_seqs 107 out of 1105
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o85_A Ribosomal protein L7AE; 100.0 2.2E-33 7.4E-38 208.8 14.7 119 22-151 3-121 (122)
2 2ale_A SNU13, NHP2/L7AE family 100.0 2.5E-33 8.6E-38 211.7 15.1 124 19-151 1-124 (134)
3 2lbw_A H/ACA ribonucleoprotein 100.0 5.2E-33 1.8E-37 206.2 13.6 121 31-151 1-121 (121)
4 2jnb_A NHP2-like protein 1; sp 100.0 4.4E-33 1.5E-37 212.8 12.2 123 20-151 20-142 (144)
5 2aif_A Ribosomal protein L7A; 100.0 2.5E-31 8.5E-36 200.7 12.9 121 22-151 13-133 (135)
6 1vq8_F 50S ribosomal protein L 100.0 4.8E-28 1.6E-32 178.9 14.7 110 31-151 10-119 (120)
7 2fc3_A 50S ribosomal protein L 100.0 7E-28 2.4E-32 179.0 13.4 111 31-152 9-119 (124)
8 1rlg_A 50S ribosomal protein L 100.0 6.1E-28 2.1E-32 178.1 11.4 111 31-152 8-118 (119)
9 1xbi_A 50S ribosomal protein L 99.9 1.4E-26 4.8E-31 171.3 11.8 108 30-152 12-119 (120)
10 3u5e_c L32, RP73, YL38, 60S ri 99.9 9.2E-27 3.1E-31 168.6 8.8 99 29-128 1-100 (105)
11 4a18_G RPL30; ribosome, eukary 99.9 1.2E-26 4E-31 167.7 8.4 99 29-128 1-100 (104)
12 3on1_A BH2414 protein; structu 99.9 3.6E-25 1.2E-29 158.9 9.8 88 36-125 4-91 (101)
13 3cpq_A 50S ribosomal protein L 99.9 6E-25 2.1E-29 160.1 10.0 96 31-127 2-98 (110)
14 3iz5_f 60S ribosomal protein L 99.9 4.1E-25 1.4E-29 162.2 8.8 94 34-128 10-104 (112)
15 2xzm_U Ribosomal protein L7AE 99.9 9.1E-25 3.1E-29 163.3 9.1 95 32-126 6-111 (126)
16 3v7q_A Probable ribosomal prot 99.9 1.1E-24 3.9E-29 156.5 8.1 89 35-125 4-92 (101)
17 1w41_A 50S ribosomal protein L 99.9 4.9E-24 1.7E-28 152.8 10.2 90 37-127 3-93 (101)
18 3j21_Z 50S ribosomal protein L 99.9 3.7E-24 1.3E-28 153.1 9.2 90 38-128 3-93 (99)
19 3v7e_A Ribosome-associated pro 99.9 8.9E-24 3.1E-28 146.8 8.6 79 42-121 3-81 (82)
20 3u5c_M 40S ribosomal protein S 99.9 1.2E-23 4.3E-28 160.3 9.0 94 32-125 22-128 (143)
21 2kg4_A Growth arrest and DNA-d 99.9 2.3E-22 7.9E-27 156.3 8.6 100 26-127 13-134 (165)
22 3vi6_A 60S ribosomal protein L 99.9 3E-22 1E-26 149.3 8.0 93 35-128 12-105 (125)
23 3jyw_G 60S ribosomal protein L 99.9 1.1E-22 3.7E-27 149.7 3.8 78 47-125 22-99 (113)
24 2zkr_f 60S ribosomal protein L 99.8 4.6E-22 1.6E-26 164.5 5.9 99 47-146 132-235 (266)
25 4a17_F RPL7A, 60S ribosomal pr 99.8 1.2E-20 4E-25 155.0 12.0 93 50-153 124-216 (255)
26 3izc_H 60S ribosomal protein R 99.8 2.2E-20 7.5E-25 153.6 10.0 93 50-153 131-223 (256)
27 3iz5_H 60S ribosomal protein L 99.8 3.4E-19 1.2E-23 146.1 13.5 97 25-125 94-201 (258)
28 3cg6_A Growth arrest and DNA-d 99.6 5.1E-15 1.7E-19 112.7 11.3 94 33-126 8-115 (146)
29 3ffm_A Growth arrest and DNA-d 99.5 1.2E-13 4.2E-18 106.9 10.8 93 34-126 30-136 (167)
30 3ir9_A Peptide chain release f 96.3 0.011 3.6E-07 45.3 6.8 76 46-123 42-162 (166)
31 1x52_A Pelota homolog, CGI-17; 95.1 0.024 8.3E-07 41.3 4.4 76 46-124 34-116 (124)
32 3nk6_A 23S rRNA methyltransfer 94.1 0.16 5.5E-06 41.5 7.7 70 51-124 36-106 (277)
33 3e20_C Eukaryotic peptide chai 92.4 0.41 1.4E-05 41.6 7.8 77 46-125 301-424 (441)
34 3agk_A Peptide chain release f 92.3 0.2 6.8E-06 42.2 5.6 78 26-106 270-352 (373)
35 3oby_A Protein pelota homolog; 92.2 0.15 5.2E-06 43.2 4.8 76 48-125 263-342 (352)
36 2qi2_A Pelota, cell division p 92.1 0.21 7.3E-06 42.1 5.5 86 36-124 251-337 (347)
37 3j15_A Protein pelota; ribosom 91.7 0.098 3.4E-06 44.3 3.0 76 46-123 276-354 (357)
38 1gz0_A Hypothetical tRNA/RRNA 91.6 0.49 1.7E-05 37.9 6.9 73 50-124 13-87 (253)
39 1dt9_A ERF1, protein (eukaryot 91.0 0.56 1.9E-05 40.4 7.1 78 46-125 296-417 (437)
40 3obw_A Protein pelota homolog; 90.9 0.26 9E-06 41.8 4.9 75 47-123 282-361 (364)
41 1b93_A Protein (methylglyoxal 90.5 0.49 1.7E-05 35.7 5.6 59 54-112 70-133 (152)
42 3agj_B Protein pelota homolog; 89.8 0.46 1.6E-05 40.0 5.5 77 46-124 268-350 (358)
43 2vgn_A DOM34; translation term 89.8 0.65 2.2E-05 39.6 6.4 78 46-125 293-376 (386)
44 3mca_B Protein DOM34, elongati 89.5 0.59 2E-05 40.0 5.9 77 46-125 287-370 (390)
45 1ipa_A RRMH, RNA 2'-O-ribose m 88.9 1 3.4E-05 36.6 6.7 75 48-124 26-103 (274)
46 2ohw_A YUEI protein; structura 88.7 2.3 7.8E-05 31.3 7.9 59 56-122 53-111 (133)
47 1vmd_A MGS, methylglyoxal synt 88.7 0.58 2E-05 36.3 4.8 59 54-112 86-149 (178)
48 2xw6_A MGS, methylglyoxal synt 88.3 0.49 1.7E-05 34.9 4.0 55 53-107 61-120 (134)
49 1x7o_A Avirb, rRNA methyltrans 81.5 2 6.7E-05 35.1 5.0 99 22-124 8-113 (287)
50 3nkl_A UDP-D-quinovosamine 4-d 80.5 1.9 6.4E-05 30.1 4.0 55 52-106 51-105 (141)
51 2yvq_A Carbamoyl-phosphate syn 78.5 2 6.7E-05 31.4 3.7 45 56-100 86-132 (143)
52 3gkn_A Bacterioferritin comigr 74.5 6.5 0.00022 27.5 5.5 90 58-153 61-162 (163)
53 3ixr_A Bacterioferritin comigr 63.1 17 0.00058 26.3 5.8 92 56-153 75-178 (179)
54 3drn_A Peroxiredoxin, bacterio 63.1 20 0.00068 25.1 6.1 63 58-125 55-121 (161)
55 3dnf_A ISPH, LYTB, 4-hydroxy-3 62.4 32 0.0011 28.4 7.9 92 27-122 164-262 (297)
56 2l5o_A Putative thioredoxin; s 60.9 35 0.0012 23.0 7.2 57 65-125 60-117 (153)
57 3szu_A ISPH, 4-hydroxy-3-methy 58.9 26 0.00089 29.4 6.8 73 66-152 225-298 (328)
58 2i6d_A RNA methyltransferase, 58.6 3.1 0.0001 33.3 1.1 88 29-124 4-94 (257)
59 2ioj_A Hypothetical protein AF 56.1 16 0.00055 25.8 4.5 55 51-108 56-114 (139)
60 3dfz_A SIRC, precorrin-2 dehyd 55.6 12 0.0004 29.4 4.0 83 66-152 91-180 (223)
61 3mfq_A TROA, high-affinity zin 53.1 16 0.00053 29.3 4.4 24 76-100 196-219 (282)
62 2ggt_A SCO1 protein homolog, m 52.1 53 0.0018 22.3 7.2 46 66-112 61-110 (164)
63 3fcs_B Integrin beta-3; beta p 50.1 23 0.00078 32.4 5.5 104 36-148 201-355 (690)
64 1xzo_A BSSCO, hypothetical pro 48.5 22 0.00076 24.7 4.2 30 66-96 69-98 (174)
65 3psh_A Protein HI_1472; substr 48.1 57 0.0019 25.6 7.1 37 59-100 77-113 (326)
66 2a4v_A Peroxiredoxin DOT5; yea 47.7 66 0.0022 22.1 7.5 86 60-152 63-157 (159)
67 3fkf_A Thiol-disulfide oxidore 47.3 42 0.0014 22.2 5.4 54 67-125 68-125 (148)
68 2f9s_A Thiol-disulfide oxidore 46.8 61 0.0021 21.8 6.3 58 62-124 55-113 (151)
69 1toa_A Tromp-1, protein (perip 46.6 42 0.0014 27.2 6.1 71 76-150 230-309 (313)
70 1ivn_A Thioesterase I; hydrola 46.1 35 0.0012 24.2 5.0 48 53-100 86-140 (190)
71 3md9_A Hemin-binding periplasm 46.1 47 0.0016 25.1 6.1 50 59-112 52-111 (255)
72 3ib7_A ICC protein; metallopho 45.5 28 0.00097 26.9 4.8 48 54-101 52-108 (330)
73 2lqo_A Putative glutaredoxin R 44.3 64 0.0022 21.3 5.8 53 67-122 4-63 (92)
74 1uf3_A Hypothetical protein TT 44.3 31 0.001 25.0 4.6 44 57-100 23-70 (228)
75 3vus_A Poly-beta-1,6-N-acetyl- 43.8 71 0.0024 25.1 7.0 65 36-100 31-98 (268)
76 3cx3_A Lipoprotein; zinc-bindi 43.0 29 0.00098 27.6 4.5 71 75-150 209-281 (284)
77 3fw2_A Thiol-disulfide oxidore 42.1 77 0.0026 21.4 7.9 55 66-125 69-127 (150)
78 1kyq_A Met8P, siroheme biosynt 41.7 18 0.00061 29.3 3.1 82 66-151 106-203 (274)
79 1d2f_A MALY protein; aminotran 41.4 30 0.001 27.4 4.4 44 55-98 151-200 (390)
80 2prs_A High-affinity zinc upta 41.3 71 0.0024 25.2 6.6 72 76-151 207-280 (284)
81 3ist_A Glutamate racemase; str 40.5 43 0.0015 26.7 5.2 40 57-99 58-97 (269)
82 1c7n_A Cystalysin; transferase 40.3 32 0.0011 27.3 4.4 44 55-98 153-202 (399)
83 2r79_A Periplasmic binding pro 39.3 1.3E+02 0.0044 23.1 8.5 73 59-150 52-134 (283)
84 2l82_A Designed protein OR32; 38.8 77 0.0026 22.9 5.8 53 55-108 15-67 (162)
85 2r7a_A Bacterial heme binding 38.6 1.2E+02 0.0042 22.6 8.7 50 59-112 52-112 (256)
86 2etv_A Iron(III) ABC transport 38.4 1.1E+02 0.0039 24.3 7.6 49 59-112 89-151 (346)
87 2wfc_A Peroxiredoxin 5, PRDX5; 38.3 91 0.0031 22.2 6.3 48 60-112 60-111 (167)
88 3qvl_A Putative hydantoin race 38.2 1.3E+02 0.0044 23.4 7.6 70 25-99 6-97 (245)
89 1ytl_A Acetyl-COA decarboxylas 38.1 28 0.00096 26.1 3.5 48 49-99 19-67 (174)
90 3gas_A Heme oxygenase; FMN-bin 38.0 28 0.00095 27.8 3.7 102 19-125 51-157 (259)
91 3g0t_A Putative aminotransfera 37.7 40 0.0014 27.1 4.6 43 56-98 172-220 (437)
92 2rli_A SCO2 protein homolog, m 37.5 97 0.0033 21.2 8.0 47 65-112 63-113 (171)
93 1jdq_A TM006 protein, hypothet 37.3 71 0.0024 21.6 5.2 41 56-99 41-83 (98)
94 3hp4_A GDSL-esterase; psychrot 37.2 40 0.0014 23.5 4.1 44 57-100 94-144 (185)
95 3td9_A Branched chain amino ac 37.1 38 0.0013 26.5 4.3 95 1-100 1-112 (366)
96 3nav_A Tryptophan synthase alp 37.0 83 0.0029 25.2 6.4 75 23-99 55-156 (271)
97 3u5r_E Uncharacterized protein 36.5 1.1E+02 0.0039 22.5 6.8 69 56-125 82-154 (218)
98 3ecd_A Serine hydroxymethyltra 36.5 27 0.00092 27.8 3.4 43 56-98 162-205 (425)
99 3erw_A Sporulation thiol-disul 36.4 68 0.0023 21.0 5.1 59 65-125 66-125 (145)
100 3vi3_B Integrin beta-1; beta p 36.0 38 0.0013 29.6 4.4 104 36-148 210-362 (454)
101 3hcz_A Possible thiol-disulfid 35.9 92 0.0032 20.4 7.2 56 65-125 63-122 (148)
102 2b7k_A SCO1 protein; metalloch 35.7 1E+02 0.0034 22.4 6.3 47 65-112 77-127 (200)
103 1xvl_A Mn transporter, MNTC pr 35.5 54 0.0018 26.7 5.1 72 75-150 236-311 (321)
104 3cf4_G Acetyl-COA decarboxylas 35.5 71 0.0024 23.2 5.4 46 55-100 24-69 (170)
105 4hn9_A Iron complex transport 35.2 1.5E+02 0.0053 23.3 7.8 48 59-112 109-165 (335)
106 3hh8_A Metal ABC transporter s 34.9 25 0.00087 28.2 3.0 67 77-150 217-290 (294)
107 3uhf_A Glutamate racemase; str 34.7 32 0.0011 27.7 3.5 40 58-100 78-117 (274)
108 3rjt_A Lipolytic protein G-D-S 34.6 51 0.0017 23.3 4.4 47 54-100 118-175 (216)
109 1pjq_A CYSG, siroheme synthase 34.4 17 0.00058 31.1 2.0 58 66-127 72-133 (457)
110 1svv_A Threonine aldolase; str 34.1 50 0.0017 25.4 4.5 44 55-98 128-182 (359)
111 3gbx_A Serine hydroxymethyltra 34.0 33 0.0011 27.3 3.5 44 55-98 158-202 (420)
112 2oqx_A Tryptophanase; lyase, p 33.5 54 0.0018 26.7 4.8 45 55-99 169-223 (467)
113 2b9s_B DNA topoisomerase I-lik 33.4 25 0.00087 22.5 2.2 22 86-107 29-50 (62)
114 1knx_A Probable HPR(Ser) kinas 32.4 38 0.0013 27.9 3.7 40 58-100 75-114 (312)
115 1zuw_A Glutamate racemase 1; ( 32.3 49 0.0017 26.1 4.3 41 56-99 55-96 (272)
116 2gzm_A Glutamate racemase; enz 32.2 52 0.0018 25.8 4.4 41 56-99 55-95 (267)
117 3k6s_B Integrin beta-2; cell r 31.9 39 0.0013 30.9 4.0 103 36-148 193-345 (687)
118 3nra_A Aspartate aminotransfer 31.7 55 0.0019 25.8 4.5 43 55-98 169-217 (407)
119 1n3y_A Integrin alpha-X; alpha 31.3 81 0.0028 22.4 5.1 48 65-112 109-168 (198)
120 2jfn_A Glutamate racemase; cel 31.2 1.3E+02 0.0046 23.7 6.8 37 61-100 79-115 (285)
121 2yvt_A Hypothetical protein AQ 31.1 63 0.0021 24.1 4.5 24 55-78 21-44 (260)
122 4g9b_A Beta-PGM, beta-phosphog 30.6 97 0.0033 22.9 5.6 72 51-126 96-198 (243)
123 2wji_A Ferrous iron transport 30.6 42 0.0014 23.2 3.3 42 66-107 81-122 (165)
124 3d03_A Phosphohydrolase; glyce 30.5 99 0.0034 22.9 5.6 46 55-100 28-78 (274)
125 2nxf_A Putative dimetal phosph 30.3 1.1E+02 0.0037 23.1 5.8 50 56-105 41-99 (322)
126 3av3_A Phosphoribosylglycinami 30.3 80 0.0027 24.1 5.1 42 55-100 17-60 (212)
127 2q8p_A Iron-regulated surface 30.2 1.7E+02 0.0058 21.8 7.2 49 59-112 53-110 (260)
128 2j48_A Two-component sensor ki 30.1 97 0.0033 19.0 5.6 49 52-100 31-82 (119)
129 1pq4_A Periplasmic binding pro 30.1 55 0.0019 26.1 4.2 60 76-150 221-286 (291)
130 2jfz_A Glutamate racemase; cel 29.6 57 0.0019 25.3 4.2 37 60-99 56-92 (255)
131 3ujp_A Mn transporter subunit; 29.6 84 0.0029 25.4 5.3 71 76-150 223-297 (307)
132 3av0_A DNA double-strand break 29.4 61 0.0021 26.5 4.5 48 55-103 49-105 (386)
133 3zy2_A Putative GDP-fucose pro 29.4 52 0.0018 28.0 4.0 35 63-99 276-310 (362)
134 3hh1_A Tetrapyrrole methylase 29.2 98 0.0034 20.9 5.0 43 57-100 71-115 (117)
135 2vvt_A Glutamate racemase; iso 29.1 95 0.0032 24.7 5.5 42 56-100 76-117 (290)
136 3qel_B Glutamate [NMDA] recept 28.8 73 0.0025 25.7 4.8 47 54-100 51-97 (364)
137 2oho_A Glutamate racemase; iso 28.5 93 0.0032 24.4 5.3 41 56-99 64-104 (273)
138 1xvw_A Hypothetical protein RV 28.1 71 0.0024 21.8 4.1 55 66-125 70-132 (160)
139 3out_A Glutamate racemase; str 27.9 48 0.0016 26.4 3.5 40 57-99 60-100 (268)
140 3kax_A Aminotransferase, class 27.9 68 0.0023 25.0 4.4 43 55-98 146-194 (383)
141 1pq4_A Periplasmic binding pro 27.8 76 0.0026 25.2 4.7 42 55-100 226-267 (291)
142 2x5n_A SPRPN10, 26S proteasome 27.7 42 0.0014 25.1 2.9 69 28-99 63-141 (192)
143 2k6v_A Putative cytochrome C o 27.6 33 0.0011 23.7 2.2 45 66-111 72-120 (172)
144 1s3l_A Hypothetical protein MJ 27.6 55 0.0019 24.1 3.6 41 56-100 42-82 (190)
145 2vi8_A Serine hydroxymethyltra 27.6 44 0.0015 26.4 3.3 44 55-98 152-196 (405)
146 3kcm_A Thioredoxin family prot 27.4 1.4E+02 0.0047 19.9 6.5 57 65-125 60-117 (154)
147 2q0q_A ARYL esterase; SGNH hyd 27.4 92 0.0031 22.1 4.8 20 81-100 164-183 (216)
148 3p9d_H T-complex protein 1 sub 27.2 84 0.0029 27.7 5.2 48 55-107 284-331 (568)
149 3dzz_A Putative pyridoxal 5'-p 27.1 79 0.0027 24.7 4.7 44 55-98 149-198 (391)
150 3bzy_B ESCU; auto cleavage pro 27.0 35 0.0012 22.8 2.1 28 80-110 27-54 (83)
151 3p9d_A T-complex protein 1 sub 27.0 87 0.003 27.6 5.3 42 58-104 284-325 (559)
152 2xgg_A Microneme protein 2; A/ 27.0 99 0.0034 21.9 4.8 63 36-98 82-156 (178)
153 3s81_A Putative aspartate race 26.8 55 0.0019 26.0 3.6 46 51-100 84-129 (268)
154 2o1e_A YCDH; alpha-beta protei 26.8 46 0.0016 26.9 3.2 69 76-150 223-298 (312)
155 3piu_A 1-aminocyclopropane-1-c 26.3 85 0.0029 25.3 4.8 42 56-97 176-228 (435)
156 1n2z_A Vitamin B12 transport p 26.2 2E+02 0.0068 21.3 8.4 50 59-112 50-108 (245)
157 3jy6_A Transcriptional regulat 26.2 1.3E+02 0.0043 22.4 5.5 72 25-101 12-93 (276)
158 1v7p_C Integrin alpha-2; snake 26.2 1.4E+02 0.0049 21.4 5.7 86 27-112 58-170 (200)
159 3i8s_A Ferrous iron transport 26.1 50 0.0017 25.7 3.3 43 65-107 84-126 (274)
160 1ax4_A Tryptophanase; tryptoph 26.1 81 0.0028 25.6 4.7 43 56-98 170-222 (467)
161 4a29_A Engineered retro-aldol 25.8 2.6E+02 0.0088 22.4 7.8 73 49-124 110-183 (258)
162 3gi1_A LBP, laminin-binding pr 25.5 96 0.0033 24.6 4.9 70 76-150 212-283 (286)
163 1tp9_A Peroxiredoxin, PRX D (t 25.4 1.7E+02 0.0058 20.2 6.4 51 57-112 61-115 (162)
164 3tsm_A IGPS, indole-3-glycerol 25.4 2.2E+02 0.0076 22.7 7.1 69 53-124 130-199 (272)
165 3t3p_B Integrin beta-3; integr 25.1 1.1E+02 0.0039 26.7 5.6 104 36-148 201-355 (472)
166 2zyj_A Alpha-aminodipate amino 24.8 84 0.0029 24.9 4.4 44 55-98 151-201 (397)
167 3f7j_A YVGN protein; aldo-keto 24.7 1E+02 0.0035 24.1 4.9 65 35-99 119-189 (276)
168 1zof_A Alkyl hydroperoxide-red 24.6 1.1E+02 0.0037 21.9 4.8 57 64-125 65-133 (198)
169 2dwu_A Glutamate racemase; iso 24.4 1E+02 0.0036 24.1 4.9 41 56-99 59-99 (276)
170 3grc_A Sensor protein, kinase; 24.3 1.5E+02 0.0051 19.2 6.4 57 51-107 35-94 (140)
171 3qq5_A Small GTP-binding prote 24.3 57 0.002 27.6 3.5 49 56-106 105-153 (423)
172 3l8a_A METC, putative aminotra 24.2 90 0.0031 25.1 4.6 44 55-98 183-232 (421)
173 3gbv_A Putative LACI-family tr 24.0 1.2E+02 0.0042 22.6 5.1 69 31-101 20-102 (304)
174 3lvj_C Sulfurtransferase TUSA; 24.0 1.3E+02 0.0046 19.2 4.6 40 57-99 26-67 (82)
175 3l6u_A ABC-type sugar transpor 23.9 1.4E+02 0.0046 22.3 5.3 73 26-100 14-96 (293)
176 1iay_A ACC synthase 2, 1-amino 23.9 1E+02 0.0034 24.7 4.8 32 66-97 188-225 (428)
177 2q8u_A Exonuclease, putative; 23.7 98 0.0034 24.5 4.7 45 55-101 50-104 (336)
178 3iyg_B T-complex protein 1 sub 23.7 1.2E+02 0.004 26.4 5.4 41 57-102 264-304 (513)
179 3dxv_A Alpha-amino-epsilon-cap 23.7 1E+02 0.0034 24.9 4.8 44 55-98 187-240 (439)
180 1je3_A EC005, hypothetical 8.6 23.6 76 0.0026 21.5 3.4 40 57-99 43-84 (97)
181 2h01_A 2-Cys peroxiredoxin; th 23.6 1.6E+02 0.0056 20.8 5.6 59 62-125 61-131 (192)
182 3tho_B Exonuclease, putative; 23.6 92 0.0031 25.5 4.6 43 56-100 33-85 (379)
183 1o69_A Aminotransferase; struc 23.4 70 0.0024 25.6 3.7 43 55-97 109-153 (394)
184 1wn2_A Peptidyl-tRNA hydrolase 23.4 1.6E+02 0.0055 20.6 5.3 61 56-122 45-105 (121)
185 2bgw_A XPF endonuclease; hydro 23.4 2.2E+02 0.0075 21.2 6.5 44 65-108 79-129 (219)
186 1jg8_A L-ALLO-threonine aldola 23.3 71 0.0024 24.6 3.6 44 55-98 116-171 (347)
187 3gt7_A Sensor protein; structu 23.2 1.7E+02 0.0059 19.5 5.4 50 51-100 36-88 (154)
188 1jkx_A GART;, phosphoribosylgl 23.1 1.1E+02 0.0038 23.4 4.7 42 55-100 14-57 (212)
189 3i42_A Response regulator rece 22.9 1.5E+02 0.0052 18.8 5.6 51 51-101 32-85 (127)
190 2jfq_A Glutamate racemase; cel 22.9 76 0.0026 25.2 3.8 42 56-100 74-115 (286)
191 3dc7_A Putative uncharacterize 22.8 1.2E+02 0.0042 21.9 4.8 47 54-100 115-181 (232)
192 3p94_A GDSL-like lipase; serin 22.5 1.1E+02 0.0039 21.3 4.4 46 55-100 103-162 (204)
193 3gi1_A LBP, laminin-binding pr 22.5 1.1E+02 0.0038 24.2 4.7 42 55-100 217-258 (286)
194 3h75_A Periplasmic sugar-bindi 22.4 1.1E+02 0.0036 23.9 4.6 40 58-100 53-93 (350)
195 2l2q_A PTS system, cellobiose- 22.4 92 0.0031 21.0 3.7 44 54-101 41-84 (109)
196 3a1s_A Iron(II) transport prot 22.4 80 0.0027 24.3 3.8 44 65-108 82-125 (258)
197 2vt1_B Surface presentation of 22.3 45 0.0015 22.8 2.0 28 80-110 27-54 (93)
198 2epj_A Glutamate-1-semialdehyd 22.2 81 0.0028 25.5 3.9 43 56-98 191-242 (434)
199 3cx3_A Lipoprotein; zinc-bindi 22.2 99 0.0034 24.4 4.3 42 55-100 215-256 (284)
200 1vjg_A Putative lipase from th 22.1 85 0.0029 22.6 3.7 45 55-100 119-174 (218)
201 2lrn_A Thiol:disulfide interch 21.9 1.8E+02 0.0063 19.4 6.9 55 66-125 62-120 (152)
202 3iyg_A T-complex protein 1 sub 21.9 1.4E+02 0.0048 26.0 5.6 23 57-79 267-289 (529)
203 3keb_A Probable thiol peroxida 21.8 60 0.0021 25.2 2.9 83 66-154 82-177 (224)
204 3h7u_A Aldo-keto reductase; st 21.8 94 0.0032 25.1 4.2 64 36-99 157-226 (335)
205 3h7r_A Aldo-keto reductase; st 21.7 94 0.0032 25.1 4.2 64 36-99 153-222 (331)
206 3h7f_A Serine hydroxymethyltra 21.7 64 0.0022 26.5 3.3 43 56-98 175-218 (447)
207 1t1v_A SH3BGRL3, SH3 domain-bi 21.7 1.6E+02 0.0055 18.6 4.8 38 83-120 22-66 (93)
208 1sff_A 4-aminobutyrate aminotr 21.6 88 0.003 24.9 4.0 34 65-98 198-238 (426)
209 3euc_A Histidinol-phosphate am 21.6 67 0.0023 25.0 3.2 43 55-97 146-196 (367)
210 3iby_A Ferrous iron transport 21.4 86 0.0029 24.1 3.8 44 65-108 82-125 (256)
211 3n5m_A Adenosylmethionine-8-am 21.4 1E+02 0.0034 25.1 4.4 44 55-98 201-254 (452)
212 2iue_A Pactolus I-domain; memb 21.4 70 0.0024 24.8 3.2 14 66-79 104-117 (212)
213 3aq1_B Thermosome subunit; gro 21.4 1.3E+02 0.0045 25.9 5.3 47 56-107 228-274 (500)
214 3fdb_A Beta C-S lyase, putativ 21.2 1.3E+02 0.0043 23.4 4.7 43 55-98 140-188 (377)
215 2gkg_A Response regulator homo 21.2 1.6E+02 0.0054 18.3 5.8 65 35-99 18-86 (127)
216 1ii7_A MRE11 nuclease; RAD50, 21.2 1.7E+02 0.0057 23.1 5.6 22 56-77 30-51 (333)
217 1pav_A Hypothetical protein TA 21.1 69 0.0023 20.2 2.7 39 57-98 22-62 (78)
218 1gd9_A Aspartate aminotransfer 21.1 76 0.0026 24.9 3.5 42 56-98 151-198 (389)
219 1y8q_A Ubiquitin-like 1 activa 21.1 66 0.0023 26.3 3.2 41 65-107 124-164 (346)
220 3t1o_A Gliding protein MGLA; G 21.0 39 0.0013 23.6 1.5 41 66-106 97-148 (198)
221 2obb_A Hypothetical protein; s 20.9 2E+02 0.0068 20.5 5.5 48 51-100 25-72 (142)
222 3l44_A Glutamate-1-semialdehyd 20.9 1E+02 0.0034 24.9 4.2 43 56-98 190-241 (434)
223 3ke3_A Putative serine-pyruvat 20.8 80 0.0027 25.1 3.6 44 55-98 124-173 (379)
224 1wik_A Thioredoxin-like protei 20.7 1.5E+02 0.005 19.4 4.4 43 74-120 28-76 (109)
225 2dyk_A GTP-binding protein; GT 20.7 50 0.0017 22.1 2.0 41 67-107 80-122 (161)
226 3bvp_A INT, TP901-1 integrase; 20.6 99 0.0034 21.4 3.7 45 54-99 59-108 (138)
227 3n6r_B Propionyl-COA carboxyla 20.6 49 0.0017 29.4 2.4 33 67-99 338-379 (531)
228 4eu1_A Mitochondrial aspartate 20.5 1.3E+02 0.0046 23.8 4.9 44 55-98 170-221 (409)
229 3mil_A Isoamyl acetate-hydroly 20.4 1.5E+02 0.005 21.3 4.7 90 54-154 101-213 (240)
230 3ftb_A Histidinol-phosphate am 20.4 76 0.0026 24.5 3.3 41 56-98 136-182 (361)
231 3iyg_E T-complex protein 1 sub 20.4 1.6E+02 0.0056 25.4 5.7 23 57-79 265-287 (515)
232 3k4h_A Putative transcriptiona 20.3 1.6E+02 0.0054 21.9 5.0 65 31-100 24-99 (292)
233 3h5n_A MCCB protein; ubiquitin 20.3 95 0.0032 25.5 4.0 34 66-100 208-241 (353)
234 3a8u_X Omega-amino acid--pyruv 20.2 1E+02 0.0035 25.0 4.2 44 55-98 205-258 (449)
235 4fbw_A DNA repair protein RAD3 20.1 1.6E+02 0.0054 25.0 5.4 24 55-78 41-64 (417)
236 1toa_A Tromp-1, protein (perip 20.0 1.3E+02 0.0045 24.2 4.7 42 55-97 235-278 (313)
No 1
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=100.00 E-value=2.2e-33 Score=208.84 Aligned_cols=119 Identities=32% Similarity=0.597 Sum_probs=111.4
Q ss_pred cCcccCCCCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC
Q 031617 22 LAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 101 (156)
Q Consensus 22 ~~~~a~Pl~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s 101 (156)
++|||+|||+++++++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++.+|+.+|+++||||++++|
T Consensus 3 ~~~~a~p~a~~~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s 82 (122)
T 3o85_A 3 IDPRAIPFANEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGS 82 (122)
T ss_dssp CCTTSCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999977789999999999999999999
Q ss_pred HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 102 KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 102 k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
+.+||++||+++++++++|+|+++ |++.|+++...|+++
T Consensus 83 k~eLG~a~Gk~~~vs~vaI~d~~~-----------~~~~~~~~~~~i~~~ 121 (122)
T 3o85_A 83 KNALGRACNVSVPTIVASIGKHDA-----------LGNVVAEIVGKVEAL 121 (122)
T ss_dssp HHHHHHHTTCSSCCSEEEECCCTT-----------THHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCEEEEEEEcccc-----------hHHHHHHHHHHHHhh
Confidence 999999999999999999999874 566777777777654
No 2
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=100.00 E-value=2.5e-33 Score=211.70 Aligned_cols=124 Identities=30% Similarity=0.599 Sum_probs=111.7
Q ss_pred hhccCcccCCCCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCcee
Q 031617 19 IVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 19 ~~~~~~~a~Pl~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
|..++|||+|||+.+++++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++.+|+.+|+++||||++
T Consensus 1 ~~~~~~~a~p~a~~~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 1 MSAPNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp CCCCCTTCCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CCCCCccccCCCCHHHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred eCCHHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 99 VASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 99 v~sk~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
++++.+||++||+++++++++|+|.+.+. +.+.++++...++.+
T Consensus 81 v~sk~eLG~a~G~~~~~s~vaI~d~~~s~---------~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 81 VPSRVALGRACGVSRPVIAASITTNDASA---------IKTQIYAVKDKIETL 124 (134)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTTCT---------THHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCeEEEEEEcCChHH---------HHHHHHHHHHHHHHh
Confidence 99999999999999988899999976543 355555555555554
No 3
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=100.00 E-value=5.2e-33 Score=206.23 Aligned_cols=121 Identities=50% Similarity=0.876 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 31 GKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
+++++++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++.+|+.+|+++||||++++++.+||++||
T Consensus 1 ~~~l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g 80 (121)
T 2lbw_A 1 SKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999977899999999999999999999999999999
Q ss_pred CcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 111 TKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 111 ~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
++++++|++|+|+|.+.+..+...++|++.|+|+.+.|+++
T Consensus 81 ~k~~~s~v~I~d~g~a~~~~~~~~~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 81 TKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 121 (121)
T ss_dssp CSSCCSEEEECCSCTTGGGCSSTHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 98899999999999988766667899999999999999875
No 4
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=100.00 E-value=4.4e-33 Score=212.79 Aligned_cols=123 Identities=33% Similarity=0.621 Sum_probs=114.8
Q ss_pred hccCcccCCCCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 20 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 20 ~~~~~~a~Pl~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+++|+|+||++.+++++++++|++|+++|+++.|.++|+|+|++|+++|||||+|++|.+++.+|+.+|+++||||+++
T Consensus 20 ~~~~~~a~Pla~~~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v 99 (144)
T 2jnb_A 20 ADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV 99 (144)
T ss_dssp SCCCCCSSSBCCHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999779999999999999999999
Q ss_pred CCHHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 100 ASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 100 ~sk~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
+++.+||++||+++++++++|+|++++. |.+.|+++.+.|+.|
T Consensus 100 ~sk~eLG~a~Gk~~~vs~vaI~~~~~s~---------i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 100 RSKQALGRACGVSRPVIACSVTIKEGSQ---------LKQQIQSIQQSIERL 142 (144)
T ss_dssp SCSHHHHHHHTCSSCCSEEEEECCTTCT---------THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCceEEEEEEeCCcHH---------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999988643 477788888888776
No 5
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.97 E-value=2.5e-31 Score=200.69 Aligned_cols=121 Identities=28% Similarity=0.602 Sum_probs=107.5
Q ss_pred cCcccCCCCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC
Q 031617 22 LAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 101 (156)
Q Consensus 22 ~~~~a~Pl~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s 101 (156)
++|+|+|+++.+++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..++.+|+.+|++++|||++++|
T Consensus 13 ~~~~a~p~~~~~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 13 FNPKAFPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp -----CCBCCSHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCccccccccHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999976779999999999999999999
Q ss_pred HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 102 KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 102 k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
+.+||++||+++++++++|+|++++ .|.+.|+++.+.|+.|
T Consensus 93 k~eLG~a~G~~~~v~~vaI~d~~~s---------~i~~~~~~~~~~~~~~ 133 (135)
T 2aif_A 93 KVALGRACGVSRPVIAAAITSKDGS---------SLSSQITELKDQIEQI 133 (135)
T ss_dssp HHHHHHHTTCSSCCSEEEEECCTTC---------TTHHHHHHHHHTTCC-
T ss_pred HHHHHHHhCCCCcEEEEEEEcCCcH---------HHHHHHHHHHHHHHHH
Confidence 9999999999998889999998864 3577788888777655
No 6
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.96 E-value=4.8e-28 Score=178.91 Aligned_cols=110 Identities=27% Similarity=0.507 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 31 GKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
+++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|.+++.+|+.+|+++||||++++|+.+||++||
T Consensus 10 p~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G 89 (120)
T 1vq8_F 10 PADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAG 89 (120)
T ss_dssp CHHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999999977899999999999999999999999999999
Q ss_pred CcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 111 TKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 111 ~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
+++++++++|+|+|.+ +..++++.+.|++|
T Consensus 90 ~~~~~~~vaI~d~g~a-----------~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 90 LEVGSAAAAVTDAGEA-----------DADVEDIADKVEEL 119 (120)
T ss_dssp CSSCCSEEEESSCSSC-----------HHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEecCchH-----------HHHHHHHHHHHHhc
Confidence 9988999999998864 34677777777765
No 7
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.95 E-value=7e-28 Score=179.05 Aligned_cols=111 Identities=33% Similarity=0.610 Sum_probs=101.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 31 GKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
+++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|.+++.+|+.+|+++||||++++|+.+||++||
T Consensus 9 p~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G 88 (124)
T 2fc3_A 9 PEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAG 88 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999999977899999999999999999999999999999
Q ss_pred CcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhhh
Q 031617 111 TKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELA 152 (156)
Q Consensus 111 ~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~~ 152 (156)
+++++++++|+|++.+ +..++++.+.+++++
T Consensus 89 ~~~~~~~vaI~d~g~a-----------~~~~~~l~~~~~~l~ 119 (124)
T 2fc3_A 89 IEVAAASVAIIEPGDA-----------ETLVREIVEKVKELR 119 (124)
T ss_dssp CSSCCSEEEEEECGGG-----------HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECcchH-----------HHHHHHHHHHHHHhH
Confidence 9988999999998753 446677777777665
No 8
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.95 E-value=6.1e-28 Score=178.08 Aligned_cols=111 Identities=31% Similarity=0.605 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 31 GKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|.+++.+|+.+|+++||||++++|+.+||++||
T Consensus 8 p~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G 87 (119)
T 1rlg_A 8 PEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVG 87 (119)
T ss_dssp CSHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999976899999999999999999999999999999
Q ss_pred CcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhhh
Q 031617 111 TKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELA 152 (156)
Q Consensus 111 ~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~~ 152 (156)
+++++++++|+|+|.+ +..++++.+.++++.
T Consensus 88 ~~~~~~~vaI~d~g~a-----------~~~~~~l~~~~~~l~ 118 (119)
T 1rlg_A 88 IEVPCASAAIINEGEL-----------RKELGSLVEKIKGLQ 118 (119)
T ss_dssp CSSCCSEEEEEECGGG-----------HHHHHHHHHHHHTTT
T ss_pred CCCCeEEEEEecCchH-----------HHHHHHHHHHHHHhh
Confidence 9988999999998753 456788888887764
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.94 E-value=1.4e-26 Score=171.33 Aligned_cols=108 Identities=34% Similarity=0.630 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhc
Q 031617 30 AGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAG 109 (156)
Q Consensus 30 ~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~ 109 (156)
++++++++++++|++| |+++.|.++|+++|++|+++|||||+|++|.+++.+|+.+|++++|||++++|+.+||++|
T Consensus 12 ~p~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 88 (120)
T 1xbi_A 12 VPEEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAA 88 (120)
T ss_dssp CCHHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 3479999999999998 9999999999999999999999999999997789999999999999999999999999999
Q ss_pred CCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhhh
Q 031617 110 ATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELA 152 (156)
Q Consensus 110 G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~~ 152 (156)
|+++++++++|+|++. .+.+.++.+.++++.
T Consensus 89 G~~~~~s~vaI~d~g~------------a~~l~~l~~~i~~l~ 119 (120)
T 1xbi_A 89 GLEVAASSVAIINEGD------------AEELKVLIEKVNVLK 119 (120)
T ss_dssp TCSSCCSEEEEEECSC------------HHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEeccch------------HHHHHHHHHHHHHhh
Confidence 9998899999999885 123777777777764
No 10
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.94 E-value=9.2e-27 Score=168.63 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCce-eeCCHHHHHh
Q 031617 29 LAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLAN 107 (156)
Q Consensus 29 l~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i-~v~sk~eLG~ 107 (156)
|++.++.++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++| +++.+|+.+|++++|||+ |++|+.+||+
T Consensus 1 ~~~~k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (105)
T 3u5e_c 1 MAPVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGT 79 (105)
T ss_dssp --------CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 45568889999999999999999999999999999999999999999988 589999999999999999 7999999999
Q ss_pred hcCCcCceEEEEEecCCCCCC
Q 031617 108 AGATKRPTCCVLVLTKPTKGE 128 (156)
Q Consensus 108 a~G~~~~~svvaI~d~~~~~~ 128 (156)
|||+++++++++|+|+|.+..
T Consensus 80 A~Gk~~~~~~vaI~D~G~a~~ 100 (105)
T 3u5e_c 80 AVGKLFRVGVVSILEAGDSDI 100 (105)
T ss_dssp HTTCSSCCSEEEEEECCSCCT
T ss_pred HhCCcccEEEEEEeccchHHH
Confidence 999998888999999998654
No 11
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.93 E-value=1.2e-26 Score=167.72 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=88.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCce-eeCCHHHHHh
Q 031617 29 LAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLAN 107 (156)
Q Consensus 29 l~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i-~v~sk~eLG~ 107 (156)
|+.++++++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|. ++.+++.+|++++|||+ |++|+.+||+
T Consensus 1 ~~~~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (104)
T 4a18_G 1 MVKKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGT 79 (104)
T ss_dssp -------CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHH
Confidence 456788899999999999999999999999999999999999999999995 89999999999999999 7999999999
Q ss_pred hcCCcCceEEEEEecCCCCCC
Q 031617 108 AGATKRPTCCVLVLTKPTKGE 128 (156)
Q Consensus 108 a~G~~~~~svvaI~d~~~~~~ 128 (156)
|||+++++++++|+|+|.+..
T Consensus 80 a~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 80 ACGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp HTTCSSCCSEEEEEECSSCGG
T ss_pred HhCCccCEEEEEEeccchHHH
Confidence 999998889999999998643
No 12
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.92 E-value=3.6e-25 Score=158.87 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCce
Q 031617 36 KRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPT 115 (156)
Q Consensus 36 ~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~ 115 (156)
++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|. .+.+|+.+|++++|||++++|+.+||++||++ ++
T Consensus 4 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~-~~ 81 (101)
T 3on1_A 4 AKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH-ER 81 (101)
T ss_dssp CHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS-CC
T ss_pred HHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc-Ce
Confidence 68999999999999999999999999999999999999999995 89999999999999999999999999999997 67
Q ss_pred EEEEEecCCC
Q 031617 116 CCVLVLTKPT 125 (156)
Q Consensus 116 svvaI~d~~~ 125 (156)
++++|+|+|.
T Consensus 82 ~~vai~d~g~ 91 (101)
T 3on1_A 82 VVIGVKDAGF 91 (101)
T ss_dssp SEEEECCHHH
T ss_pred EEEEEECccH
Confidence 8999999774
No 13
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=6e-25 Score=160.13 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhc
Q 031617 31 GKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAG 109 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~ 109 (156)
.++++++++++|++|+++|+++.|.++|+++|++|+++|||||+|+ |.+++.+|+.+|++++|||+.+ +|+.+||++|
T Consensus 2 ~~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~ 80 (110)
T 3cpq_A 2 RRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELGAVC 80 (110)
T ss_dssp -----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHh
Confidence 4567789999999999999999999999999999999999999999 5579999999999999998777 9999999999
Q ss_pred CCcCceEEEEEecCCCCC
Q 031617 110 ATKRPTCCVLVLTKPTKG 127 (156)
Q Consensus 110 G~~~~~svvaI~d~~~~~ 127 (156)
|+++.+++++|+|++.+.
T Consensus 81 G~~~~~s~vaI~d~g~a~ 98 (110)
T 3cpq_A 81 GKPFPVAALLVLDEGLSN 98 (110)
T ss_dssp TCSSCCSEEEEEECTTCC
T ss_pred CCccceEEEEEecCCHHH
Confidence 998878899999998754
No 14
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.92 E-value=4.1e-25 Score=162.17 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCc
Q 031617 34 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATK 112 (156)
Q Consensus 34 l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~ 112 (156)
-.++++++|++|+++|+++.|.++|+++|++|+++|||||+|++| +++++|+.+|+.++|||+++ +|+.+||+|||+.
T Consensus 10 ~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~ 88 (112)
T 3iz5_f 10 SGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACGKY 88 (112)
T ss_dssp GGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCc
Confidence 457899999999999999999999999999999999999999999 58999999999999999999 9999999999999
Q ss_pred CceEEEEEecCCCCCC
Q 031617 113 RPTCCVLVLTKPTKGE 128 (156)
Q Consensus 113 ~~~svvaI~d~~~~~~ 128 (156)
+.+++++|+|+|.+..
T Consensus 89 ~~v~~vaI~D~G~a~~ 104 (112)
T 3iz5_f 89 YRVCCLSILDPGDSDI 104 (112)
T ss_dssp CSSCEEEEECCSCCSH
T ss_pred cceEEEEEeccchHHH
Confidence 8889999999998643
No 15
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.91 E-value=9.1e-25 Score=163.26 Aligned_cols=95 Identities=15% Similarity=0.313 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCC
Q 031617 32 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGAT 111 (156)
Q Consensus 32 ~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~ 111 (156)
..+++++..+|+.|+++|+++.|.++|+|+|++|+++|||||+|++|.+++.+|+.+|++++|||++++++.+||++||+
T Consensus 6 ~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~ 85 (126)
T 2xzm_U 6 QQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGH 85 (126)
T ss_dssp HHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC
Confidence 45689999999999999999999999999999999999999999998779999999999999999999999999999996
Q ss_pred -----------cCceEEEEEecCCCC
Q 031617 112 -----------KRPTCCVLVLTKPTK 126 (156)
Q Consensus 112 -----------~~~~svvaI~d~~~~ 126 (156)
..+++|++|+|+|..
T Consensus 86 ~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 86 FTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp CCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred CccccccCcCceeeEEEEEEEecCcc
Confidence 345999999998863
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.91 E-value=1.1e-24 Score=156.52 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCc
Q 031617 35 SKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP 114 (156)
Q Consensus 35 ~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~ 114 (156)
+++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|. .+.+|+.+|+.++|||++++|+.+||+|||++ .
T Consensus 4 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~-~ 81 (101)
T 3v7q_A 4 GMEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKE-A 81 (101)
T ss_dssp CCTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSS-C
T ss_pred cchhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhhhCcc-c
Confidence 467999999999999999999999999999999999999999996 89999999999999999999999999999997 4
Q ss_pred eEEEEEecCCC
Q 031617 115 TCCVLVLTKPT 125 (156)
Q Consensus 115 ~svvaI~d~~~ 125 (156)
+++++|+|+|.
T Consensus 82 ~~~~ai~D~g~ 92 (101)
T 3v7q_A 82 RVVVAVTDQGF 92 (101)
T ss_dssp CSEEEECCHHH
T ss_pred eEEEEEeccHH
Confidence 67899999775
No 17
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.91 E-value=4.9e-24 Score=152.84 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCcCce
Q 031617 37 RTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPT 115 (156)
Q Consensus 37 ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~~~~ 115 (156)
.++++|++|+++|+++.|.++|+++|++|+++|||+|+|+++ +++.+|+.+|++++|||+.+ +|+.+||++||+++.+
T Consensus 3 ~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~-~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~ 81 (101)
T 1w41_A 3 DFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTV 81 (101)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCC
T ss_pred hHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcE
Confidence 578999999999999999999999999999999999999866 69999999999999998775 9999999999999888
Q ss_pred EEEEEecCCCCC
Q 031617 116 CCVLVLTKPTKG 127 (156)
Q Consensus 116 svvaI~d~~~~~ 127 (156)
++++|+|++.+.
T Consensus 82 ~~vai~d~g~a~ 93 (101)
T 1w41_A 82 SALAVVDPGASR 93 (101)
T ss_dssp CEEEEEECTTCC
T ss_pred EEEEEecCCHHH
Confidence 899999999764
No 18
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.91 E-value=3.7e-24 Score=153.12 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCcee-eCCHHHHHhhcCCcCceE
Q 031617 38 TLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIY-VASKEDLANAGATKRPTC 116 (156)
Q Consensus 38 i~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~-v~sk~eLG~a~G~~~~~s 116 (156)
|...|++|+++|+++.|.++|+++|++|+++|||+|+|+++ +++.+|+.+|++++|||+. ++|+.+||++||++++++
T Consensus 3 i~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~ 81 (99)
T 3j21_Z 3 LAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVA 81 (99)
T ss_dssp HHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSE
T ss_pred HHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEE
Confidence 67899999999999999999999999999999999999876 6999999999999999755 599999999999998899
Q ss_pred EEEEecCCCCCC
Q 031617 117 CVLVLTKPTKGE 128 (156)
Q Consensus 117 vvaI~d~~~~~~ 128 (156)
+++|+|+|.+..
T Consensus 82 ~vaI~d~g~a~~ 93 (99)
T 3j21_Z 82 SLAIVDPGESKI 93 (99)
T ss_dssp EEEESSCSSCSH
T ss_pred EEEEEccchHHH
Confidence 999999998643
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.90 E-value=8.9e-24 Score=146.81 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=75.6
Q ss_pred HHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEe
Q 031617 42 VRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 121 (156)
Q Consensus 42 L~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~ 121 (156)
+...+++|+++.|.++|+++|++|+++|||||+|++| +++.+|+.+|+++||||++++++.+||++||+++++++++|+
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 4567899999999999999999999999999999999 699999999999999999999999999999999999999985
No 20
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.89 E-value=1.2e-23 Score=160.28 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhH--hcCCCceeeCCHHHHHhhc
Q 031617 32 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCE--ESDIPYIYVASKEDLANAG 109 (156)
Q Consensus 32 ~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~--~~nIP~i~v~sk~eLG~a~ 109 (156)
-.++++|+.+|+.|+++|++++|.++++|+|++|+++|||||+|++|.+++++|+.+|+ ++||||++++|+.+||++|
T Consensus 22 md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~ 101 (143)
T 3u5c_M 22 VTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWA 101 (143)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHh
Confidence 35889999999999999999999999999999999999999999997789999999999 9999999999999999999
Q ss_pred CCc-----------CceEEEEEecCCC
Q 031617 110 ATK-----------RPTCCVLVLTKPT 125 (156)
Q Consensus 110 G~~-----------~~~svvaI~d~~~ 125 (156)
|.. .+++|++|+|+|.
T Consensus 102 Gl~k~d~~Gk~rkVv~~s~v~I~d~G~ 128 (143)
T 3u5c_M 102 GLGKIDREGNARKVVGASVVVVKNWGA 128 (143)
T ss_dssp SCCCCSSSSCCSCCCCCSCEEESCCCC
T ss_pred CcCccccCCCccccceeEEEEEcccch
Confidence 952 2588999999986
No 21
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=156.30 Aligned_cols=100 Identities=23% Similarity=0.343 Sum_probs=89.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcCCccccHHHHHHHH--HcCCccEEEEeCCCC-chhH-----HhhHHHHhHhcCCCce
Q 031617 26 AKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSI--RRGHKGLCVIAGNIS-PIDV-----ITHVPILCEESDIPYI 97 (156)
Q Consensus 26 a~Pl~~~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI--~k~kakLVIIA~D~~-p~~~-----~~~l~~lc~~~nIP~i 97 (156)
+.|| +.++++++++|+.|+..++++.|+++++|+| ++|++++||||.|++ |..+ ..+|+.+|+++||||+
T Consensus 13 ~~~m--~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i 90 (165)
T 2kg4_A 13 TERM--DKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINIL 90 (165)
T ss_dssp CCCH--HHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhH--HHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEE
Confidence 5666 7899999999999999999999999999999 999999999999997 5434 4455599999999999
Q ss_pred eeCCHHHHHhhcCC--------------cCceEEEEEecCCCCC
Q 031617 98 YVASKEDLANAGAT--------------KRPTCCVLVLTKPTKG 127 (156)
Q Consensus 98 ~v~sk~eLG~a~G~--------------~~~~svvaI~d~~~~~ 127 (156)
+|+|+.+||++||. .++++|++|+|+|...
T Consensus 91 ~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s 134 (165)
T 2kg4_A 91 RVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQ 134 (165)
T ss_dssp EESCHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCC
T ss_pred EECCHHHHHHHHCCcccccccccccCCCcccceEEEEecccccc
Confidence 99999999999996 3678999999988754
No 22
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.86 E-value=3e-22 Score=149.33 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCce-eeCCHHHHHhhcCCcC
Q 031617 35 SKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYI-YVASKEDLANAGATKR 113 (156)
Q Consensus 35 ~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i-~v~sk~eLG~a~G~~~ 113 (156)
.++++++|++|+++|+++.|.++|+++|++|+++|||||+|++| +++.+|+.+|...++|+. |++|+.+||.|||+.+
T Consensus 12 ~~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~ 90 (125)
T 3vi6_A 12 LESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYY 90 (125)
T ss_dssp SSCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcc
Confidence 36789999999999999999999999999999999999999999 589999999888877753 6899999999999998
Q ss_pred ceEEEEEecCCCCCC
Q 031617 114 PTCCVLVLTKPTKGE 128 (156)
Q Consensus 114 ~~svvaI~d~~~~~~ 128 (156)
.+++++|+|+|.+..
T Consensus 91 ~v~~vaI~D~G~a~~ 105 (125)
T 3vi6_A 91 RVCTLAIIDPGDSDI 105 (125)
T ss_dssp CCCEEEEEECTTCCC
T ss_pred cEEEEEEeCchhHHH
Confidence 888999999998765
No 23
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.86 E-value=1.1e-22 Score=149.65 Aligned_cols=78 Identities=24% Similarity=0.457 Sum_probs=72.8
Q ss_pred hcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCCC
Q 031617 47 EHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 47 kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
+...|..|.++|+++|++|+++|||||+|++|.+++.||+.+|+++||||+++++|.+||++||+++ +++++|+|.+.
T Consensus 22 ~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~-~a~vai~d~~~ 99 (113)
T 3jyw_G 22 KPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEVRA 99 (113)
T ss_dssp SSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSS-CCSEEEECSCS
T ss_pred CCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCC-cEEEEEEeCCH
Confidence 4456899999999999999999999999999988999999999999999999999999999999986 78899998664
No 24
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.85 E-value=4.6e-22 Score=164.53 Aligned_cols=99 Identities=20% Similarity=0.365 Sum_probs=77.1
Q ss_pred hcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCCCC
Q 031617 47 EHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 126 (156)
Q Consensus 47 kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~~~ 126 (156)
+.+.|+.|+++|+++|++|+++|||||+||+|.+++.+|+.+|+++||||++++|+.+||++||++ .++|++|+|.|.+
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk-~~s~VAItD~G~e 210 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRK-TCTTVAFTQVNSE 210 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSS-CCSEEEETTCSST
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC-CceEEEEeecCcc
Confidence 347799999999999999999999999999998899999999999999999999999999999998 5889999998864
Q ss_pred CCc-----chHHHHhhHHHHHHHHH
Q 031617 127 GEL-----GQEEQDKLKADYTLVVE 146 (156)
Q Consensus 127 ~~~-----~~~~~~~~~~~y~e~~~ 146 (156)
... .+...++|+|.|+|+..
T Consensus 211 D~~al~klve~ik~~y~d~y~e~~~ 235 (266)
T 2zkr_f 211 DKGALAKLVEAIRTNYNDRYDEIRR 235 (266)
T ss_dssp TTTHHHHHHHHHC------------
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 322 13455678888888764
No 25
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.84 E-value=1.2e-20 Score=154.96 Aligned_cols=93 Identities=26% Similarity=0.419 Sum_probs=82.7
Q ss_pred CccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCCCCCCc
Q 031617 50 CLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 129 (156)
Q Consensus 50 ~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~~~~~~ 129 (156)
.|..|+++|+++|++|+++|||||+||+|.+++.||+.+|+++||||+++.++.+||+++|+++ +++++|++.+.
T Consensus 124 ~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt-~s~Vaitdv~~---- 198 (255)
T 4a17_F 124 VLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKT-ATAVALTEVRN---- 198 (255)
T ss_dssp CEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSC-CSEEEECCCCH----
T ss_pred eeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCc-ceEEEeeccCH----
Confidence 4778999999999999999999999999999999999999999999999999999999999986 78899998662
Q ss_pred chHHHHhhHHHHHHHHHHHHhhhc
Q 031617 130 GQEEQDKLKADYTLVVEDVKELAS 153 (156)
Q Consensus 130 ~~~~~~~~~~~y~e~~~~i~~~~~ 153 (156)
+++..|+++++.|+..|.
T Consensus 199 ------EDk~al~kLve~iktnyn 216 (255)
T 4a17_F 199 ------EDKAKLQQFSELFKTNYN 216 (255)
T ss_dssp ------HHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHhhcc
Confidence 345667777777777664
No 26
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.82 E-value=2.2e-20 Score=153.63 Aligned_cols=93 Identities=23% Similarity=0.422 Sum_probs=79.6
Q ss_pred CccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCCCCCCc
Q 031617 50 CLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 129 (156)
Q Consensus 50 ~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~~~~~~ 129 (156)
.|..|+++|+++|++|+++|||||+||+|.+++.+|+.+|+++||||++++++.+||++||+++ +++++|+|.+. ++
T Consensus 131 ~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~-~s~VAItD~g~-eD- 207 (256)
T 3izc_H 131 AVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEVRA-ED- 207 (256)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSS-CCSEEEESSCC-SC-
T ss_pred hhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC-cEEEEeecCCh-hh-
Confidence 4778999999999999999999999999988999999999999999999999999999999984 88999999775 23
Q ss_pred chHHHHhhHHHHHHHHHHHHhhhc
Q 031617 130 GQEEQDKLKADYTLVVEDVKELAS 153 (156)
Q Consensus 130 ~~~~~~~~~~~y~e~~~~i~~~~~ 153 (156)
+..|+++++.|+..|.
T Consensus 208 --------k~al~kLve~iktnyn 223 (256)
T 3izc_H 208 --------EAALAKLVSTIDANFA 223 (256)
T ss_dssp --------CHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHhhhh
Confidence 2345555555555543
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.81 E-value=3.4e-19 Score=146.12 Aligned_cols=97 Identities=26% Similarity=0.427 Sum_probs=81.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHHh-----------cCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcC
Q 031617 25 IAKPLAGKKLSKRTLKLVRRAAE-----------HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESD 93 (156)
Q Consensus 25 ~a~Pl~~~~l~~ki~~lL~~A~k-----------ag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~n 93 (156)
..+|.+.++-.++++ ..|.+ -..+..|+|+|+++|++++++|||||.|++|.+++.|||.||+++|
T Consensus 94 KYrPEtk~ekk~rL~---~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~g 170 (258)
T 3iz5_H 94 KYRPEDKAAKKERLL---KRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKME 170 (258)
T ss_dssp CCCCTHHHHHHHHHH---HHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTT
T ss_pred hcCCCChHHHHHHHH---HHHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcC
Confidence 456766555555544 33332 1236789999999999999999999999999999999999999999
Q ss_pred CCceeeCCHHHHHhhcCCcCceEEEEEecCCC
Q 031617 94 IPYIYVASKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 94 IP~i~v~sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
||||++.++.+||+++|+++ ++++++++.+.
T Consensus 171 VPY~iVk~KarLG~~vgrKt-ct~Va~t~v~~ 201 (258)
T 3iz5_H 171 VPYCIVKGKARLGSIVHKKT-ASVLCLTTVKN 201 (258)
T ss_dssp CCEEEESCHHHHHHHTTCSS-CCSEEEEESCC
T ss_pred CCeEEECCHHHHHHHhCCcc-ceEEEEEecCH
Confidence 99999999999999999986 78889988653
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.61 E-value=5.1e-15 Score=112.72 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHcC--CccEEEEeCCCCc------hhHHhhHHHHhHhcCCCceeeCCHHH
Q 031617 33 KLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRG--HKGLCVIAGNISP------IDVITHVPILCEESDIPYIYVASKED 104 (156)
Q Consensus 33 ~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~--kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~v~sk~e 104 (156)
.+.+++..+|+.|...+.|+.|+.++.|+|.++ ++.|||+|.||+. ..+.+.|.+||.+++||++.|.+.+.
T Consensus 8 ~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kk 87 (146)
T 3cg6_A 8 GAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQR 87 (146)
T ss_dssp CHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHH
T ss_pred CHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhH
Confidence 568899999999999999999999999999997 9999999999982 25899999999999999999999999
Q ss_pred HHhhcCC------cCceEEEEEecCCCC
Q 031617 105 LANAGAT------KRPTCCVLVLTKPTK 126 (156)
Q Consensus 105 LG~a~G~------~~~~svvaI~d~~~~ 126 (156)
||+++|+ .+.++|++|+|+|..
T Consensus 88 Lgew~Gk~d~~g~pr~~sCvvV~d~g~e 115 (146)
T 3cg6_A 88 LAAIVGSDEEGGAPGDLHCILISNPNED 115 (146)
T ss_dssp HHHHC----------CCSEEEEECCC--
T ss_pred HHHHhCCcCCCCCCCCCEEEEEecCCcc
Confidence 9999994 346899999998863
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=106.90 Aligned_cols=93 Identities=25% Similarity=0.358 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHcC--CccEEEEeCCCC-chh-----HHhhHHHHhHhcCCCceeeCCHHHH
Q 031617 34 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRG--HKGLCVIAGNIS-PID-----VITHVPILCEESDIPYIYVASKEDL 105 (156)
Q Consensus 34 l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~--kakLVIIA~D~~-p~~-----~~~~l~~lc~~~nIP~i~v~sk~eL 105 (156)
+.+++..+|+.|...+.|+.|+.++.|+|.+. +++|||+|.|++ +.+ +.+.|.++|.+++||++.|.+.+.|
T Consensus 30 v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkL 109 (167)
T 3ffm_A 30 AGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRL 109 (167)
T ss_dssp HHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchH
Confidence 34899999999999999999999999999884 899999999985 222 6888999999999999999999999
Q ss_pred HhhcCCc------CceEEEEEecCCCC
Q 031617 106 ANAGATK------RPTCCVLVLTKPTK 126 (156)
Q Consensus 106 G~a~G~~------~~~svvaI~d~~~~ 126 (156)
|+++|+. +.++|++|+|++..
T Consensus 110 gew~G~~~~~~k~~~csCVlVtd~ge~ 136 (167)
T 3ffm_A 110 AAIVGAGEEAGAPGDLHCILISNPNED 136 (167)
T ss_dssp HHHHTTSCCSSSCSCCSEEEEECSSSS
T ss_pred HHHhCcCCCCCCCCccEEEEECCCCcc
Confidence 9999952 36999999998863
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=96.29 E-value=0.011 Score=45.29 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=59.3
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCch--------------------------------------------hH
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPI--------------------------------------------DV 81 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~--------------------------------------------~~ 81 (156)
...|+.+.|.++|.++++-|.+..+||..|.... ++
T Consensus 42 ~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 121 (166)
T 3ir9_A 42 ADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDI 121 (166)
T ss_dssp TCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEH
T ss_pred hCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHH
Confidence 4578999999999999999999999999886421 36
Q ss_pred HhhHHHHhHhcCCCceeeCCHHHHHhhc-CCcCceEEEEEecC
Q 031617 82 ITHVPILCEESDIPYIYVASKEDLANAG-ATKRPTCCVLVLTK 123 (156)
Q Consensus 82 ~~~l~~lc~~~nIP~i~v~sk~eLG~a~-G~~~~~svvaI~d~ 123 (156)
+..|...+++++--+.++.++.+-|.-+ .--.+ ++||+-+
T Consensus 122 ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGG--IaaiLRy 162 (166)
T 3ir9_A 122 VDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGG--IAAILRY 162 (166)
T ss_dssp HHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTT--EEEEESS
T ss_pred HHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCC--EEEEEec
Confidence 7788999999999999999988877743 22123 5566543
No 31
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=95.08 E-value=0.024 Score=41.31 Aligned_cols=76 Identities=14% Similarity=0.016 Sum_probs=58.6
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEE
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCV 118 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svv 118 (156)
...|+.+.|..+|.++++.|.+..++|..|.- ...+.. |...+++++-.+.++.+..+-|.-+ +. --.++
T Consensus 34 ~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~-~gGIa 110 (124)
T 1x52_A 34 HEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQ-LTGVA 110 (124)
T ss_dssp SCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HT-TTTEE
T ss_pred cCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hc-CCCEE
Confidence 44589999999999999999999999998731 123556 7888999999999999887777655 21 23467
Q ss_pred EEecCC
Q 031617 119 LVLTKP 124 (156)
Q Consensus 119 aI~d~~ 124 (156)
||+-++
T Consensus 111 AiLRy~ 116 (124)
T 1x52_A 111 AILRFP 116 (124)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 776554
No 32
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=94.15 E-value=0.16 Score=41.46 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHcC-CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCC
Q 031617 51 LKRGVKEVVKSIRRG-HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 51 lv~G~~~v~kaI~k~-kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
++.|.+.|..+|+.+ .+.-|++..+.... ..+...|.+.++|+..+ ++..|.++.+...+-.++++...+
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECC
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecC
Confidence 899999999999987 67788888887553 45667788899998666 788999988876677788887755
No 33
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=92.36 E-value=0.41 Score=41.63 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=60.3
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCc---------------------------------------------hh
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP---------------------------------------------ID 80 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p---------------------------------------------~~ 80 (156)
...|..+.|.++|.+|++.|.+..++|..+..- .+
T Consensus 301 ~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~ 380 (441)
T 3e20_C 301 LDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSML 380 (441)
T ss_dssp TTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEE
T ss_pred cCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhh
Confidence 346899999999999999999999999987740 13
Q ss_pred HHhhHHHHhHhcCCCceeeCCHHHHHhhc--CCcCceEEEEEecCCC
Q 031617 81 VITHVPILCEESDIPYIYVASKEDLANAG--ATKRPTCCVLVLTKPT 125 (156)
Q Consensus 81 ~~~~l~~lc~~~nIP~i~v~sk~eLG~a~--G~~~~~svvaI~d~~~ 125 (156)
++..|...++++|.-+.++.++.+-|.-+ +. . .++||+-++-
T Consensus 381 ~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~~f-g--GIaaiLRy~~ 424 (441)
T 3e20_C 381 LSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGF-G--GIGAVMRYQL 424 (441)
T ss_dssp HHHHHHHHGGGGSCCEEEECTTSHHHHHHHHTS-T--TEEEECSSCC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCHHHHHHHHcC-C--cEEEEEeccC
Confidence 55578889999999999999998888744 22 2 3567766554
No 34
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=92.32 E-value=0.2 Score=42.23 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=59.4
Q ss_pred cCCCCChHHH---HHHHHHHHHH--HhcCCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 26 AKPLAGKKLS---KRTLKLVRRA--AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 26 a~Pl~~~~l~---~ki~~lL~~A--~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++.++.-. .++++-+..+ +..|..+.|..+|.++++.|.+..++|..| . +....|...+.+.|-.+.++.
T Consensus 270 ~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs 346 (373)
T 3agk_A 270 AEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVP 346 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEEC
Confidence 4555555332 3344433322 346899999999999999999999999998 3 578889999999999999998
Q ss_pred CHHHHH
Q 031617 101 SKEDLA 106 (156)
Q Consensus 101 sk~eLG 106 (156)
+..+-|
T Consensus 347 ~~~~~g 352 (373)
T 3agk_A 347 ESLAEA 352 (373)
T ss_dssp TTSTTH
T ss_pred CCCccH
Confidence 876656
No 35
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=92.24 E-value=0.15 Score=43.16 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=58.3
Q ss_pred cCCccccHHHHHHHHHcCCccEEEEeCCCCchh----HHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecC
Q 031617 48 HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPID----VITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 123 (156)
Q Consensus 48 ag~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~----~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~ 123 (156)
.|+.+.|.++|.+|++.|.+.-++|..|..-.. ....|...+++.+-.+.++.+.-+-|.-+ .. --.++||+-+
T Consensus 263 d~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~-lGGIaAiLRy 340 (352)
T 3oby_A 263 GERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MS-LGGIAALLRF 340 (352)
T ss_dssp TCSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HH-TTSEEEEESS
T ss_pred CCcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hc-CCCEEEEEec
Confidence 399999999999999999999999998763221 46778889999999999999886666543 11 1246778766
Q ss_pred CC
Q 031617 124 PT 125 (156)
Q Consensus 124 ~~ 125 (156)
+-
T Consensus 341 ~~ 342 (352)
T 3oby_A 341 NV 342 (352)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 36
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=92.11 E-value=0.21 Score=42.08 Aligned_cols=86 Identities=12% Similarity=0.009 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCC-chhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCc
Q 031617 36 KRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNIS-PIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP 114 (156)
Q Consensus 36 ~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~-p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~ 114 (156)
.++++-+-.....++.+.|.++|.++++.|.+..++|..+.. ..+ +..|...++++|-.+.++.+..+-|.-+ ...
T Consensus 251 ~~~l~~f~~~l~~d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~l- 327 (347)
T 2qi2_A 251 KEIVDEFLVAVKKDMGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKF- 327 (347)
T ss_dssp HHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHT-
T ss_pred HHHHHHHHHHHhcCCEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH-Hhc-
Confidence 444443333333349999999999999999999999999874 333 7778899999999999999887777654 211
Q ss_pred eEEEEEecCC
Q 031617 115 TCCVLVLTKP 124 (156)
Q Consensus 115 ~svvaI~d~~ 124 (156)
-.++||+-++
T Consensus 328 GGIAaiLRy~ 337 (347)
T 2qi2_A 328 GGFAGILRYR 337 (347)
T ss_dssp TSEEEEECSC
T ss_pred CCEEEEEecc
Confidence 2367777655
No 37
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=91.74 E-value=0.098 Score=44.26 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=56.5
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCc---hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEec
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP---IDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 122 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p---~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d 122 (156)
...|..+.|.++|.+|++.|.+.-++|..|... .+....|...+++.|--+.++.+..+-|.-+. . --.++||+-
T Consensus 276 ~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL~-~-lgGiaAiLR 353 (357)
T 3j15_A 276 RNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKLK-A-LGGLAALLR 353 (357)
T ss_dssp HSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-H-HCSEEEEES
T ss_pred cCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhhh-c-CCcEEEEEe
Confidence 346899999999999999999999999877533 34678889999999999988887654444221 1 112566664
Q ss_pred C
Q 031617 123 K 123 (156)
Q Consensus 123 ~ 123 (156)
+
T Consensus 354 y 354 (357)
T 3j15_A 354 F 354 (357)
T ss_dssp S
T ss_pred c
Confidence 3
No 38
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=91.58 E-value=0.49 Score=37.91 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=56.0
Q ss_pred CccccHHHHHHHHHcC--CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEecCC
Q 031617 50 CLKRGVKEVVKSIRRG--HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 50 ~lv~G~~~v~kaI~k~--kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
-++.|.+.|..+++.+ .+.-+++..+.... ....+..+|++.+||+..+ ++..|-+..+...+-.++++....
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~i~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 87 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDK-RLLPLIHALESQGVVIQLA-NRQYLDEKSDGAVHQGIIARVKPG 87 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCT-TTHHHHHHHHHHTCEEEEE-CSHHHHHTTTSCCCTTEEEEECCC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccch-hHHHHHHHHHHCCCcEEEe-CHHHHHHHhCCCCCcEEEEEEecc
Confidence 4889999999999987 57888888876543 2456677788899998665 467888888876666788887654
No 39
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=91.00 E-value=0.56 Score=40.37 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=58.0
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCC--------ch-----------------------------------hHH
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNIS--------PI-----------------------------------DVI 82 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~--------p~-----------------------------------~~~ 82 (156)
+..|..+.|..+|.++++.|.+..++|..|.. +. +++
T Consensus 296 ~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~v 375 (437)
T 1dt9_A 296 QDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLL 375 (437)
T ss_dssp SSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHH
T ss_pred cCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHH
Confidence 44689999999999999999999999998864 10 124
Q ss_pred hhHHHHhHhcCCCceeeCCHHHHHhh-cCCcCceEEEEEecCCC
Q 031617 83 THVPILCEESDIPYIYVASKEDLANA-GATKRPTCCVLVLTKPT 125 (156)
Q Consensus 83 ~~l~~lc~~~nIP~i~v~sk~eLG~a-~G~~~~~svvaI~d~~~ 125 (156)
..|...++++|-.+.++.+..+-|.- +.--.+ ++||+-++-
T Consensus 376 e~L~e~~~~~G~~V~ivs~~~e~G~q~l~~~gG--IaAiLRy~i 417 (437)
T 1dt9_A 376 EWFANNYKKFGATLEIVTDKSQEGSQFVKGFGG--IGGILRYRV 417 (437)
T ss_dssp HHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTT--EEEECSSCC
T ss_pred HHHHHHHHHcCCEEEEECCCChhHHHHHHhCCC--EEEEEeccc
Confidence 44788889999999999998877764 322223 567766553
No 40
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=90.92 E-value=0.26 Score=41.84 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=56.5
Q ss_pred hcCCccccHHHHHHHHHcCCccEEEEeCCCCc-----hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEe
Q 031617 47 EHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP-----IDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 121 (156)
Q Consensus 47 kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p-----~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~ 121 (156)
..|..+.|.++|.+|++.|.+..++|..|..- .+....|...+++++--+.++.+..+-|.-+.. --.++||+
T Consensus 282 d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL~~--lGGIAAiL 359 (364)
T 3obw_A 282 QPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFELKN--LTGILAIL 359 (364)
T ss_dssp SCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHHHH--TTTEEEEE
T ss_pred CCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhhhc--CCcEEEEE
Confidence 35899999999999999999999999988643 235777889999999999999887655553311 11256666
Q ss_pred cC
Q 031617 122 TK 123 (156)
Q Consensus 122 d~ 123 (156)
-+
T Consensus 360 Ry 361 (364)
T 3obw_A 360 RF 361 (364)
T ss_dssp SS
T ss_pred ec
Confidence 43
No 41
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=90.50 E-value=0.49 Score=35.68 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=44.9
Q ss_pred cHHHHHHHHHcCCccEEEEeCC---CCc-hhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCc
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGN---ISP-IDVITHVPILCEESDIPYIYV-ASKEDLANAGATK 112 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D---~~p-~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~ 112 (156)
|..++...|++|++.+||-..| ..| ..=...|.+.|-.+||||..- .+-..+-+++-..
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai~~~ 133 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSPHFN 133 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSGGGG
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcc
Confidence 7889999999999999999988 334 223667999999999999764 3555555554443
No 42
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=89.85 E-value=0.46 Score=40.04 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=58.8
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEE
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVL 119 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svva 119 (156)
+..|..+.|..+|.+|++.|.+..++|..|... ......|...++++|-.+.++.+..+-|.-+.. --.++|
T Consensus 268 ~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL~~--~gGIaA 345 (358)
T 3agj_B 268 KSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERLVS--FGGVIA 345 (358)
T ss_dssp HCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHHGG--GTTEEE
T ss_pred cCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhhhc--CCcEEE
Confidence 445899999999999999999999999987421 223667888889999999999988887864411 123677
Q ss_pred EecCC
Q 031617 120 VLTKP 124 (156)
Q Consensus 120 I~d~~ 124 (156)
|+-++
T Consensus 346 iLRy~ 350 (358)
T 3agj_B 346 LLRYP 350 (358)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 77655
No 43
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=89.78 E-value=0.65 Score=39.58 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEE
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVL 119 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svva 119 (156)
+..|+.+.|..+|.++++.|.+..++|..|.-. ..-+..|...++++|-.+.++.+..+-|.-+.. --.++|
T Consensus 293 ~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL~~--lgGIAA 370 (386)
T 2vgn_A 293 KDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQ--LTGIAC 370 (386)
T ss_dssp TTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHH--TTTEEE
T ss_pred cCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhHhc--cCcEEE
Confidence 345899999999999999999999999998521 112567788889999999999988777754421 123677
Q ss_pred EecCCC
Q 031617 120 VLTKPT 125 (156)
Q Consensus 120 I~d~~~ 125 (156)
|+-++-
T Consensus 371 iLRy~i 376 (386)
T 2vgn_A 371 ILKYPL 376 (386)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 776553
No 44
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=89.47 E-value=0.59 Score=39.95 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred HhcCCccccHHHHHHHHHcCCccEEEEeCCCCc-------hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEE
Q 031617 46 AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISP-------IDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCV 118 (156)
Q Consensus 46 ~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~p-------~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svv 118 (156)
...|..+.|.++|.+|++.|.+..++|..+.-. ..+. .|...++++|--+.++.+..+-|.-+.. --.++
T Consensus 287 ~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~qL~~--lgGia 363 (390)
T 3mca_B 287 EDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWV-SLVEGVKEINCPVYIFSSLHESGKQLDL--LSGIA 363 (390)
T ss_dssp HCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHH-HHHHHHHHTTCCEEEECTTSHHHHHHHH--TTSEE
T ss_pred cCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHH-HHHHHHHhcCCEEEEECCCCCchhhhhc--CCcEE
Confidence 346899999999999999999999999977531 1233 5777889999999999887766664411 12467
Q ss_pred EEecCCC
Q 031617 119 LVLTKPT 125 (156)
Q Consensus 119 aI~d~~~ 125 (156)
||+-++-
T Consensus 364 AiLRy~i 370 (390)
T 3mca_B 364 AILTYPV 370 (390)
T ss_dssp EEBSSCC
T ss_pred EEEeccC
Confidence 8876664
No 45
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=88.94 E-value=1 Score=36.57 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=52.7
Q ss_pred cCC-ccccHHHHHHHHHcC-CccEEEEeCCCCchhHHhhHHHHhHhcC-CCceeeCCHHHHHhhcCCcCceEEEEEecCC
Q 031617 48 HKC-LKRGVKEVVKSIRRG-HKGLCVIAGNISPIDVITHVPILCEESD-IPYIYVASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 48 ag~-lv~G~~~v~kaI~k~-kakLVIIA~D~~p~~~~~~l~~lc~~~n-IP~i~v~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
.|. ++.|.+.|..+++.+ .+.-+++..+.... ....+...+.+.+ +|+. .-++..|.++.+...+-.++++...+
T Consensus 26 ~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~~~~v~-~v~~~~l~~ls~~~~~qGv~a~~~~~ 103 (274)
T 1ipa_A 26 QRRFLIEGAREIERALQAGIELEQALVWEGGLNP-EEQQVYAALGRVGRLALL-EVSEAVLKKLSVRDNPAGLIALARMP 103 (274)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCH-HHHHHHHCC-----CEEE-EECHHHHHHHCCSSSCCSEEEEEECC
T ss_pred cCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccc-hHHHHHHHHHhcCCccEE-EeCHHHHHHHhCCCCCCeEEEEEeCC
Confidence 343 789999999999987 58888888887543 2445666677778 8864 45688999998877666777777654
No 46
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=88.74 E-value=2.3 Score=31.26 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEec
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 122 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d 122 (156)
.++.+.+++...-.|+|-++.+. ++...+..+|+++|||+..|.+ -....+.++|...|
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~-~~~~~YiklA~~~~i~fTiV~~-------~~~~~~~glVv~s~ 111 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQY-QSYSSYIQMASRYGVPFKIVSD-------LQFHTPLGIVIAAD 111 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCH-HHHHHHHHHHHHTTCCEEEECC-------CSSCCSEEEEEEES
T ss_pred HHHHHHHhhCCCcEEEEcCCCCH-HHHHHHHHHHHHcCCCeEEecC-------CCCCCCeEEEEEcC
Confidence 45567899999999999999988 4899999999999999999987 22234565555544
No 47
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=88.74 E-value=0.58 Score=36.28 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=45.0
Q ss_pred cHHHHHHHHHcCCccEEEEeCC---CCc-hhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCc
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGN---ISP-IDVITHVPILCEESDIPYIYV-ASKEDLANAGATK 112 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D---~~p-~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~ 112 (156)
|-.++...|++|++.|||-..| ..| ..=...|.+.|-.+||||..- .+-..+-.++-..
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ail~~ 149 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSPLMN 149 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSGGGG
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcc
Confidence 7889999999999999999988 333 112667899999999999765 4556665554443
No 48
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=88.29 E-value=0.49 Score=34.93 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHcCCccEEEEeCC--C-Cc-hhHHhhHHHHhHhcCCCceeeC-CHHHHHh
Q 031617 53 RGVKEVVKSIRRGHKGLCVIAGN--I-SP-IDVITHVPILCEESDIPYIYVA-SKEDLAN 107 (156)
Q Consensus 53 ~G~~~v~kaI~k~kakLVIIA~D--~-~p-~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~ 107 (156)
-|..++...|++|++.+||-..| . .| ..=...|.+.|-.+||||..-- +-..+=.
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 120 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIP 120 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHH
Confidence 57889999999999999999988 3 22 1125668999999999997653 4443333
No 49
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=81.53 E-value=2 Score=35.05 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=54.4
Q ss_pred cCcccCCCCCh-HHHHHHHHHHHH--HH-hcCC-ccccHHHHHHHHHcCC-ccEEEEeCCCCchhHHhhHHHHhHhcCCC
Q 031617 22 LAPIAKPLAGK-KLSKRTLKLVRR--AA-EHKC-LKRGVKEVVKSIRRGH-KGLCVIAGNISPIDVITHVPILCEESDIP 95 (156)
Q Consensus 22 ~~~~a~Pl~~~-~l~~ki~~lL~~--A~-kag~-lv~G~~~v~kaI~k~k-akLVIIA~D~~p~~~~~~l~~lc~~~nIP 95 (156)
+.|.+..+.++ ..-+.+.+|.+. .| +.|. ++.|.+.|..+|+.+. +.-|++..+........ .+.+..++|
T Consensus 8 ~~~~~~~ItS~n~~ik~~~~L~~~~k~R~~~g~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~---~l~~~~~~~ 84 (287)
T 1x7o_A 8 RTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAR---ELLRTVRTE 84 (287)
T ss_dssp ----------CCHHHHHHHHTTSCHHHHHHHTEEEEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHH---HHHHHSCSE
T ss_pred CCCCCcCCCCCCHHHHHHHHHhhchhhHhhcCcEEEEeHHHHHHHHhCCCCeEEEEEecCcccchhHH---HHHHHcCCc
Confidence 45555566551 112333333332 12 2343 7899999999999875 77888888764311122 233333477
Q ss_pred ceeeCCHHHHHhhcCCc-CceEEEEEecCC
Q 031617 96 YIYVASKEDLANAGATK-RPTCCVLVLTKP 124 (156)
Q Consensus 96 ~i~v~sk~eLG~a~G~~-~~~svvaI~d~~ 124 (156)
+ +.-++..|.++.+.. .+-.++++...+
T Consensus 85 v-~~v~~~~l~~ls~~~~~~qGv~a~~~~~ 113 (287)
T 1x7o_A 85 Q-IAMAPDLLMELGEKNEAPPEVVAVVEMP 113 (287)
T ss_dssp E-EEECHHHHTTSSCSSSCCCSEEEEEECC
T ss_pred E-EEeCHHHHHHHhCCCCCCCcEEEEEecC
Confidence 5 445788999988877 666777877654
No 50
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=80.46 E-value=1.9 Score=30.12 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHH
Q 031617 52 KRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 106 (156)
Q Consensus 52 v~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG 106 (156)
+.|..+....+++..+..||||-..........+...|...++.+.++++-.++-
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~~ 105 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLV 105 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHHh
Confidence 4456677777788888999999754433567888999999999999999877653
No 51
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=78.46 E-value=2 Score=31.38 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCccEEEEeCCCC--chhHHhhHHHHhHhcCCCceeeC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNIS--PIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~--p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.++...|++|++.|||-..+-. +..=-..|.+.|-++||||+.-.
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~~ 132 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNF 132 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECSH
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcCH
Confidence 4688889999999999988763 21224568999999999997643
No 52
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=74.47 E-value=6.5 Score=27.53 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-CHHHHHhhcCCcCc-----------eEEEEEecCCC
Q 031617 58 VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATKRP-----------TCCVLVLTKPT 125 (156)
Q Consensus 58 v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~a~G~~~~-----------~svvaI~d~~~ 125 (156)
..+.+....+.+|.|..| ++. .+..+++++++++..+. ...++.++.|.... .....|.|+.+
T Consensus 61 ~~~~~~~~~~~vv~vs~d-~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G 135 (163)
T 3gkn_A 61 LLPEFDKAGAKILGVSRD-SVK----SHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEG 135 (163)
T ss_dssp HHHHHHHTTCEEEEEESS-CHH----HHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTS
T ss_pred HHHHHHHCCCEEEEEeCC-CHH----HHHHHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCC
Confidence 334444455888999988 343 34556678888886654 46688888887530 23455666443
Q ss_pred CCCcchHHHHhhHHHHHHHHHHHHhhhc
Q 031617 126 KGELGQEEQDKLKADYTLVVEDVKELAS 153 (156)
Q Consensus 126 ~~~~~~~~~~~~~~~y~e~~~~i~~~~~ 153 (156)
.-... ..-.......+++.+.|+++..
T Consensus 136 ~i~~~-~~~~~~~~~~~~il~~l~~l~~ 162 (163)
T 3gkn_A 136 QVVQA-WRKVKVAGHADAVLAALKAHAK 162 (163)
T ss_dssp CEEEE-ECSCCSTTHHHHHHHHHHHHCC
T ss_pred eEEEE-EcCCCcccCHHHHHHHHHHHhc
Confidence 21100 0000112345677777777653
No 53
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=63.08 E-value=17 Score=26.28 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-CHHHHHhhcCCcCc-----------eEEEEEecC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATKRP-----------TCCVLVLTK 123 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~a~G~~~~-----------~svvaI~d~ 123 (156)
++..+.++...+.+|.|+.|. +. .+..+++++++++..+. ...++.++.|.... .....|+|+
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~-~~----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~ 149 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDS-VK----SHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGP 149 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCC-HH----HHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECT
T ss_pred HHHHHHHHHCCCEEEEEcCCC-HH----HHHHHHHHcCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECC
Confidence 344445555568888888874 32 34567788898886654 46688888887421 123566665
Q ss_pred CCCCCcchHHHHhhHHHHHHHHHHHHhhhc
Q 031617 124 PTKGELGQEEQDKLKADYTLVVEDVKELAS 153 (156)
Q Consensus 124 ~~~~~~~~~~~~~~~~~y~e~~~~i~~~~~ 153 (156)
.+.-... ..-.......+++.+.|+++..
T Consensus 150 ~G~I~~~-~~~~~~~~~~~~il~~l~~l~~ 178 (179)
T 3ixr_A 150 THRIVEA-WRQVKVPGHAEEVLNKLKAHAE 178 (179)
T ss_dssp TSBEEEE-ECSCCSTTHHHHHHHHHHHHHC
T ss_pred CCEEEEE-EcCCCCCCCHHHHHHHHHHHhc
Confidence 4421100 0001112346677777777654
No 54
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=63.06 E-value=20 Score=25.08 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-CHHHHHhhcCCcC---ceEEEEEecCCC
Q 031617 58 VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANAGATKR---PTCCVLVLTKPT 125 (156)
Q Consensus 58 v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~a~G~~~---~~svvaI~d~~~ 125 (156)
..+.+....+.+|.|..|. + ..+..+++++++++..+. ...++.+..|... ..-...|.|+.+
T Consensus 55 ~~~~~~~~~v~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G 121 (161)
T 3drn_A 55 NWDLLKDYDVVVIGVSSDD-I----NSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKG 121 (161)
T ss_dssp THHHHHTTCEEEEEEESCC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTS
T ss_pred HHHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCC
Confidence 3444444457888888873 4 245667789999986665 4678999888752 033455665443
No 55
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=62.38 E-value=32 Score=28.36 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHHHHHHHHh----cCCccccHHH---HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 27 KPLAGKKLSKRTLKLVRRAAE----HKCLKRGVKE---VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 27 ~Pl~~~~l~~ki~~lL~~A~k----ag~lv~G~~~---v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
..=.+..-...|.+.|+.-.. ...+..-+.. ..+.|. +++-++|+-++-+..+ ..+|..+|++.+.|-.++
T Consensus 164 QTT~s~~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSN-T~rL~eia~~~~~~ty~I 241 (297)
T 3dnf_A 164 QTTQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGN-TRRLYYISKELNPNTYHI 241 (297)
T ss_dssp CTTCCHHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHH-HHHHHHHHHHHCSSEEEE
T ss_pred ecCCcHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCch-hHHHHHHHHhcCCCEEEe
Confidence 333344445666666653211 1233333333 333443 4577777777665544 889999999999999999
Q ss_pred CCHHHHHhhcCCcCceEEEEEec
Q 031617 100 ASKEDLANAGATKRPTCCVLVLT 122 (156)
Q Consensus 100 ~sk~eLG~a~G~~~~~svvaI~d 122 (156)
.+-.+|-..--. ++..++|+-
T Consensus 242 e~~~el~~~wl~--~~~~VGITA 262 (297)
T 3dnf_A 242 ETAEELQPEWFR--GVKRVGISA 262 (297)
T ss_dssp SSGGGCCGGGGT--TCSEEEEEE
T ss_pred CChHHCCHHHhC--CCCEEEEee
Confidence 999998763211 345789986
No 56
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=60.86 E-value=35 Score=23.00 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=36.2
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCcCceEEEEEecCCC
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
..+.++.|..|.++ ...+..+.+++++++-.. ....+|.+..|... .-.+.|.|+.+
T Consensus 60 ~~~~vv~v~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~-~P~~~lid~~G 117 (153)
T 2l5o_A 60 KNFQVLAVAQPIDP---IESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV-YPTSVLIGKKG 117 (153)
T ss_dssp TTEEEEEEECTTSC---HHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS-SSEEEEECSSS
T ss_pred CCeEEEEEecCCCC---HHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc-cCeEEEECCCC
Confidence 34667777766544 345567778999987544 44678888888753 33455665443
No 57
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=58.95 E-value=26 Score=29.36 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=49.7
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh-hcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHH
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 144 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~-a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~ 144 (156)
++-++|+-+.-+..+ ..+|..+|++.+.|-.++.+-.+|-. ++. ++..|+|+- |.|-- ....+++
T Consensus 225 ~vD~miVVGg~nSSN-T~rL~eia~~~g~~ty~Ie~~~el~~~wl~---g~~~VGITA-GASTP---------~~lieeV 290 (328)
T 3szu_A 225 QAEVVLVVGSKNSSN-SNRLAELAQRMGKRAFLIDDAKDIQEEWVK---EVKCVGVTA-GASAP---------DILVQNV 290 (328)
T ss_dssp HCSEEEEECCTTCHH-HHHHHHHHHHTTCEEEEESSGGGCCHHHHT---TCSEEEEEE-CTTCC---------HHHHHHH
T ss_pred hCCEEEEeCCCCCch-HHHHHHHHHHhCCCEEEeCChHHCCHHHhC---CCCEEEEee-cCCCC---------HHHHHHH
Confidence 477777766655544 88999999999999999999888866 332 244688885 44332 2345666
Q ss_pred HHHHHhhh
Q 031617 145 VEDVKELA 152 (156)
Q Consensus 145 ~~~i~~~~ 152 (156)
+..++++.
T Consensus 291 i~~l~~~~ 298 (328)
T 3szu_A 291 VARLQQLG 298 (328)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 66666543
No 58
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=58.65 E-value=3.1 Score=33.28 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHH-H-hcCC-ccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHH
Q 031617 29 LAGKKLSKRTLKLVRRA-A-EHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDL 105 (156)
Q Consensus 29 l~~~~l~~ki~~lL~~A-~-kag~-lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eL 105 (156)
..+...-+.+.+|-++- | +.|. ++.|.+.|..+++...+..|++..+... .+. ++.++|+..+.....|
T Consensus 4 s~~n~~ik~~~~L~~~k~R~~~g~f~veG~~~v~eal~~~~i~~l~~~~~~~~-----~l~---~~~~~~v~~v~~~~~l 75 (257)
T 2i6d_A 4 MLSANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLR-----AVS---TPHDAEVVELPESFDF 75 (257)
T ss_dssp CCCHHHHHHHHHTTSHHHHHHHTEEEEESHHHHHHHGGGSCEEEEEEEHHHHH-----TSC---CCTTCEEEEECTTCCG
T ss_pred CcCCHHHHHHHHHhcccchhhcCcEEEEcHHHHHHHHhcCCcCEEEEEcCchH-----HHH---HhcCCCEEEeChHHHH
Confidence 33444445555554332 2 2343 7899999999998844777888765422 121 1567887666554888
Q ss_pred HhhcCCcCceEEEEEecCC
Q 031617 106 ANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 106 G~a~G~~~~~svvaI~d~~ 124 (156)
-++.+...+-.++++...+
T Consensus 76 ~~ls~~~~~qGv~a~~~~~ 94 (257)
T 2i6d_A 76 KRISTQTTPQPLMAVFDLP 94 (257)
T ss_dssp GGTCCSSSCCSEEEEEECC
T ss_pred HHHhcCCCCCeEEEEEECC
Confidence 8888876666777777654
No 59
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=56.08 E-value=16 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=37.1
Q ss_pred ccc-cHHH-HHHHHHc-CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-CHHHHHhh
Q 031617 51 LKR-GVKE-VVKSIRR-GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SKEDLANA 108 (156)
Q Consensus 51 lv~-G~~~-v~kaI~k-~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~a 108 (156)
++. |.++ +.....+ -.+..+||+++..|. ..+..+|++++||++.+. +..+....
T Consensus 56 ~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~---~~i~~~A~~~~ipvl~t~~~T~~~~~~ 114 (139)
T 2ioj_A 56 LVTGGDRSDLLLTALEMPNVRCLILTGNLEPV---QLVLTKAEERGVPVILTGHDTLTAVSR 114 (139)
T ss_dssp EEEETTCHHHHHHHTTCTTEEEEEEETTCCCC---HHHHHHHHHHTCCEEECSSCHHHHHHH
T ss_pred EEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC---HHHHHHHHHCCCeEEEECCCHHHHHHH
Confidence 555 6664 3333334 468899999998775 345688999999998886 44444443
No 60
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=55.58 E-value=12 Score=29.38 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=45.8
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhc-CC--cCceEEEEEecCCCCCCcc---hHHHH-hhH
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAG-AT--KRPTCCVLVLTKPTKGELG---QEEQD-KLK 138 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~-G~--~~~~svvaI~d~~~~~~~~---~~~~~-~~~ 138 (156)
.+-+||.|.|... +-..+-.+|+ .+||+..+. .-+++... .- ++.--.+||.++|.+-... .++++ .|-
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD-~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~~lp 166 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMAS-SFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSSNYD 166 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeC-CcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHHHcc
Confidence 3789999988643 5677888888 999965544 44555421 10 1122468898888654322 33333 233
Q ss_pred HHHHHHHHHHHhhh
Q 031617 139 ADYTLVVEDVKELA 152 (156)
Q Consensus 139 ~~y~e~~~~i~~~~ 152 (156)
..|+++++.+.+++
T Consensus 167 ~~~~~~~~~~~~~R 180 (223)
T 3dfz_A 167 ESYTQYTQFLYECR 180 (223)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44565555555544
No 61
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=53.12 E-value=16 Score=29.31 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.9
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeC
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+|. -+..|..++++++|+++|+.
T Consensus 196 ps~~-~l~~l~~~ik~~~v~~if~e 219 (282)
T 3mfq_A 196 VANS-DMIETVNLIIDHNIKAIFTE 219 (282)
T ss_dssp CCHH-HHHHHHHHHHHHTCCEEECB
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEe
Confidence 3454 47778889999999999985
No 62
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=52.06 E-value=53 Score=22.34 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=31.4
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CC---HHHHHhhcCCc
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-AS---KEDLANAGATK 112 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~s---k~eLG~a~G~~ 112 (156)
.+.+|.|..|-.. +....+..+++++++++..+ ++ ..++.+..|..
T Consensus 61 ~~~vv~vs~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 61 DLTPLFISIDPER-DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CEEEEEEESCTTT-CCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred cEEEEEEEeCCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 6778888887543 23556778888999988766 23 33577777764
No 63
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=50.14 E-value=23 Score=32.41 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCC---ccccHHHHHHHH--------HcCCccEEEEeCCCCchh------------------------
Q 031617 36 KRTLKLVRRAAEHKC---LKRGVKEVVKSI--------RRGHKGLCVIAGNISPID------------------------ 80 (156)
Q Consensus 36 ~ki~~lL~~A~kag~---lv~G~~~v~kaI--------~k~kakLVIIA~D~~p~~------------------------ 80 (156)
.++.+.++..+-+|. --.|...+..++ +++..+|+|++.|+.+..
T Consensus 201 ~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~ 280 (690)
T 3fcs_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (690)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCB
T ss_pred HHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCc
Confidence 344455554444444 122455555554 335689999999998640
Q ss_pred ----------HHhhHHHHhHhcCCCceeeCCH------HHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHH
Q 031617 81 ----------VITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 144 (156)
Q Consensus 81 ----------~~~~l~~lc~~~nIP~i~v~sk------~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~ 144 (156)
.+..|.....++||.++|+-+. ++|-..+.. ++++++....+ ...+-..+.|+++
T Consensus 281 y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i~~----s~v~~l~~dSs-----ni~~li~~~y~~i 351 (690)
T 3fcs_B 281 YSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPG----TTVGVLSMDSS-----NVLQLIVDAYGKI 351 (690)
T ss_dssp BGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHSTT----CEEEEECTTCT-----THHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhcCC----ceeeeeccccH-----HHHHHHHHHHHhh
Confidence 1445666667789988887543 345555532 46777754432 2355556777776
Q ss_pred HHHH
Q 031617 145 VEDV 148 (156)
Q Consensus 145 ~~~i 148 (156)
.+.|
T Consensus 352 ~s~v 355 (690)
T 3fcs_B 352 RSKV 355 (690)
T ss_dssp TTCE
T ss_pred hcce
Confidence 5543
No 64
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=48.46 E-value=22 Score=24.73 Aligned_cols=30 Identities=3% Similarity=0.069 Sum_probs=20.7
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCc
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPY 96 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~ 96 (156)
.+.+|.|..|-.. +....+..+++++++++
T Consensus 69 ~~~vv~is~d~~~-d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 69 DVRIISFSVDPEN-DKPKQLKKFAANYPLSF 98 (174)
T ss_dssp CCEEEEEESCTTT-CCHHHHHHHHTTSCCCG
T ss_pred cEEEEEEEeCCCC-CCHHHHHHHHHHcCCCC
Confidence 4778888877422 23455677889999987
No 65
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=48.10 E-value=57 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...|..-+.-|||......+ .....| ++.|||++.+.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~-~~~~~L----~~~Gipvv~~~ 113 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPS-EMIKQI----SDVNIPVVAIS 113 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCH-HHHHHH----HTTTCCEEEEC
T ss_pred HHHHHccCCCEEEEeCCCCh-HHHHHH----HHcCCCEEEEe
Confidence 35566667888887755433 344444 57899998875
No 66
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=47.68 E-value=66 Score=22.14 Aligned_cols=86 Identities=8% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC-HHHHHhhcCCcCce------EEEEEecCCCCC-Cc-c
Q 031617 60 KSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS-KEDLANAGATKRPT------CCVLVLTKPTKG-EL-G 130 (156)
Q Consensus 60 kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s-k~eLG~a~G~~~~~------svvaI~d~~~~~-~~-~ 130 (156)
+.+.... .+|.|..| ++. .+..+++++++++-.+.+ ..++.+..|....- +.+.| ..|.-. .. +
T Consensus 63 ~~~~~~~-~vv~is~d-~~~----~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g 135 (159)
T 2a4v_A 63 QELKEYA-AVFGLSAD-SVT----SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVK 135 (159)
T ss_dssp HHHTTTC-EEEEEESC-CHH----HHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEES
T ss_pred HHHHhCC-cEEEEeCC-CHH----HHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEcc
Confidence 3343333 78888877 342 345677888998866544 56788888875321 34445 434211 00 1
Q ss_pred hHHHHhhHHHHHHHHHHHHhhh
Q 031617 131 QEEQDKLKADYTLVVEDVKELA 152 (156)
Q Consensus 131 ~~~~~~~~~~y~e~~~~i~~~~ 152 (156)
..-.......++++...++++.
T Consensus 136 ~~~~~~~~~~~~~l~~~l~~l~ 157 (159)
T 2a4v_A 136 ISPEVSVNDAKKEVLEVAEKFK 157 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccHHHHHHHHHHHHHHhh
Confidence 1112233455666666666653
No 67
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=47.31 E-value=42 Score=22.25 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=35.4
Q ss_pred ccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC----HHHHHhhcCCcCceEEEEEecCCC
Q 031617 67 KGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS----KEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 67 akLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s----k~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
+.++.|..|.++ ..+..+.+++++++..+.+ ..++.+..|... .-.+.|.|+.+
T Consensus 68 ~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-~P~~~lid~~G 125 (148)
T 3fkf_A 68 FAMLGISLDIDR----EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILT-LPTNILLSPTG 125 (148)
T ss_dssp EEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS-SSEEEEECTTS
T ss_pred eEEEEEECCCCH----HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCC-cCEEEEECCCC
Confidence 666667666654 3445666889998877654 468888888753 44556665443
No 68
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=46.75 E-value=61 Score=21.79 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCcCceEEEEEecCC
Q 031617 62 IRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 62 I~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
+....+.++.|..|-++. .+..+.+++++++-.+ ....++.+..|... .-.+.|.|+.
T Consensus 55 ~~~~~v~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~P~~~lid~~ 113 (151)
T 2f9s_A 55 FKSQGVEIVAVNVGESKI----AVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP-LPTTFLINPE 113 (151)
T ss_dssp HGGGTEEEEEEEESCCHH----HHHHHHHHHTCCSCEEEETTSHHHHHTTCCS-SCEEEEECTT
T ss_pred hccCCeEEEEEECCCCHH----HHHHHHHHcCCCceEEECCchHHHHhcCCCC-CCeEEEECCC
Confidence 333347777777776553 3455667888887554 34668888888753 3445566544
No 69
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=46.56 E-value=42 Score=27.22 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=40.4
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcC-----CcCceEEE--EEecCCCCCCcchHHHHhhHHHHHHHHH
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGA-----TKRPTCCV--LVLTKPTKGELGQEEQDKLKADYTLVVE 146 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G-----~~~~~svv--aI~d~~~~~~~~~~~~~~~~~~y~e~~~ 146 (156)
.+|. -+..|..++++++|+++|+.+ ...+.+.+- ...++.++ ..+|+-.... ..-..|-+.+.....
T Consensus 230 ps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~v~~~l~~d~l~~~~---~~~~~Y~~~m~~n~~ 305 (313)
T 1toa_A 230 ASAH-DMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAG---TSEGTYVGMVTHNID 305 (313)
T ss_dssp CCHH-HHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEEEEECSSSCCCTT---SGGGSHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHccchhhhcCCceeeeeeccCCCCCC---CCccCHHHHHHHHHH
Confidence 3454 477788899999999999852 223333332 33333333 3356543211 123467777777666
Q ss_pred HHHh
Q 031617 147 DVKE 150 (156)
Q Consensus 147 ~i~~ 150 (156)
.|.+
T Consensus 306 ~l~~ 309 (313)
T 1toa_A 306 TIVA 309 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 70
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=46.15 E-value=35 Score=24.19 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHcCCccEEEEeCCCCc-------hhHHhhHHHHhHhcCCCceeeC
Q 031617 53 RGVKEVVKSIRRGHKGLCVIAGNISP-------IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 53 ~G~~~v~kaI~k~kakLVIIA~D~~p-------~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
..+++.++.+++..++++++..-..+ ..+-..+..+|++++++|+-+.
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 34556677777766787777532222 2345668889999999998775
No 71
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=46.07 E-value=47 Score=25.05 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC---C-------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA---S-------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~---s-------k~eLG~a~G~~ 112 (156)
...|..-+.-|||......+......| ++.+||++.+. + -..||+++|+.
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQI----ASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHH----HHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 566777788899888776543344444 57889998874 2 23678888874
No 72
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=45.51 E-value=28 Score=26.94 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=31.1
Q ss_pred cHHHHHHHHHc--CCccEEEEeCCCCch-------hHHhhHHHHhHhcCCCceeeCC
Q 031617 54 GVKEVVKSIRR--GHKGLCVIAGNISPI-------DVITHVPILCEESDIPYIYVAS 101 (156)
Q Consensus 54 G~~~v~kaI~k--~kakLVIIA~D~~p~-------~~~~~l~~lc~~~nIP~i~v~s 101 (156)
..+.+++.+.+ .++.+||+++|.... .+...+..+.+..++|++.+.-
T Consensus 52 ~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~G 108 (330)
T 3ib7_A 52 RLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMG 108 (330)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCC
Confidence 34556666665 689999999997531 1233344444556999988753
No 73
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=44.34 E-value=64 Score=21.29 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=28.9
Q ss_pred ccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC--C----HHHHHhhc-CCcCceEEEEEec
Q 031617 67 KGLCVIAGNISPIDVITHVPILCEESDIPYIYVA--S----KEDLANAG-ATKRPTCCVLVLT 122 (156)
Q Consensus 67 akLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~--s----k~eLG~a~-G~~~~~svvaI~d 122 (156)
+.++|-..+.=| +=.....+-+++||||..+. . +.++-+.. |. +.+-+|.|-|
T Consensus 4 a~I~vYs~~~Cp--~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~-~tVP~I~i~D 63 (92)
T 2lqo_A 4 AALTIYTTSWCG--YCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGN-RTVPTVKFAD 63 (92)
T ss_dssp SCEEEEECTTCS--SHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSS-SCSCEEEETT
T ss_pred CcEEEEcCCCCH--hHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCC-CEeCEEEEeC
Confidence 344444444435 34556677788999997653 2 23343332 54 3355666654
No 74
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=44.28 E-value=31 Score=25.01 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHHHHHcCCccEEEEeCCCCchh----HHhhHHHHhHhcCCCceeeC
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPID----VITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~~----~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+.+.+.+.++.+||+++|..... ....+.....+.++|++++.
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 70 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVP 70 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEEC
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEC
Confidence 334444444688999999975321 11122333345678888775
No 75
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=43.82 E-value=71 Score=25.10 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHcCC---ccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 36 KRTLKLVRRAAEHKCLKRGVKEVVKSIRRGH---KGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 36 ~ki~~lL~~A~kag~lv~G~~~v~kaI~k~k---akLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
..+-.-++..++.|.-+....++...+..++ .+.|+|.=|-.+.+....+..+-+++++|..++-
T Consensus 31 ~~f~~ql~~L~~~gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~atfFv 98 (268)
T 3vus_A 31 SALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAP 98 (268)
T ss_dssp HHHHHHHHHHHHTTCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCCEEEEE
Confidence 3444556666788888999999999998875 4777777676676666667778899999987643
No 76
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=42.96 E-value=29 Score=27.59 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHh
Q 031617 75 NISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKE 150 (156)
Q Consensus 75 D~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~ 150 (156)
..+|. -+..|..++++++|+++|+.+ ...+.+.+-...++.++ .+|+-.... ..-..|-+.+......|.+
T Consensus 209 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~-~l~~l~~~~---~~~~~Y~~~m~~n~~~l~~ 281 (284)
T 3cx3_A 209 EPSPR-QLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLK-TLNPLESDP---QNDKTYLENLEENMSILAE 281 (284)
T ss_dssp CCCSH-HHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEE-ECCCSSSCC---CSSCCHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEE-EecCcccCC---CCcccHHHHHHHHHHHHHH
Confidence 34454 477788999999999999852 23334433333344444 445433221 1134677777766666554
No 77
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=42.11 E-value=77 Score=21.35 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=37.3
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC----HHHHHhhcCCcCceEEEEEecCCC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS----KEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s----k~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
.+.++.|..|-++ ..+..+.+++++++..+.+ ..++.+..|... .-...+.|+.+
T Consensus 69 ~~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-~P~~~lid~~G 127 (150)
T 3fw2_A 69 YIGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK-IPANILLSSDG 127 (150)
T ss_dssp SEEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS-SSEEEEECTTS
T ss_pred CeEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCc-cCeEEEECCCC
Confidence 4777777777554 3455666899999877765 468888888753 34456666544
No 78
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=41.67 E-value=18 Score=29.26 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=48.3
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhc---CCCceeeCCHHHHHh-----hcCCcCceEEEEEecCCCCCCcc---hHHH
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEES---DIPYIYVASKEDLAN-----AGATKRPTCCVLVLTKPTKGELG---QEEQ 134 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~---nIP~i~v~sk~eLG~-----a~G~~~~~svvaI~d~~~~~~~~---~~~~ 134 (156)
.+.+||.|.|. + ++-..+..+|+++ +||+..+.+ -+|.. .+.+ .+.-.++|..+|.+-... .+++
T Consensus 106 ~adlViaat~d-~-~~n~~I~~~Ar~~f~~~i~VNvvd~-pel~~f~~Pa~~~~-g~~l~IaIST~Gksp~lA~~ir~~i 181 (274)
T 1kyq_A 106 AWYIIMTCIPD-H-PESARIYHLCKERFGKQQLVNVADK-PDLCDFYFGANLEI-GDRLQILISTNGLSPRFGALVRDEI 181 (274)
T ss_dssp CEEEEEECCSC-H-HHHHHHHHHHHHHHCTTSEEEETTC-GGGBSEECCEEEEE-TTTEEEEEEESSSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCC-h-HHHHHHHHHHHHhcCCCcEEEECCC-cccCeeEeeeEEEe-CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 57899999984 4 3577899999999 888755543 34444 2111 121478898877654322 3344
Q ss_pred HhhH-----HHHHHHHHHHHhh
Q 031617 135 DKLK-----ADYTLVVEDVKEL 151 (156)
Q Consensus 135 ~~~~-----~~y~e~~~~i~~~ 151 (156)
+.+- ..|++++..+.++
T Consensus 182 e~~l~~~p~~~~~~~~~~l~~~ 203 (274)
T 1kyq_A 182 RNLFTQMGDLALEDAVVKLGEL 203 (274)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHH
Confidence 4443 3444554444443
No 79
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=41.36 E-value=30 Score=27.41 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.++|...+.++|++..=-+| .+.+..|..+|+++|++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 456666676556888887532222 23477889999999986643
No 80
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=41.27 E-value=71 Score=25.21 Aligned_cols=72 Identities=4% Similarity=-0.036 Sum_probs=43.9
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhh
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 151 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~ 151 (156)
.+|. -+..|..++++++|+++|+.+ ...+.+.+-...++.++. +|+-..... .....|-+.+......|.+.
T Consensus 207 ps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~-ld~l~~~~~--~~~~~Y~~~m~~n~~~l~~a 280 (284)
T 2prs_A 207 PGAQ-RLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGT-LDPLGTNIK--LGKTSYSEFLSQLANQYASC 280 (284)
T ss_dssp CCHH-HHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEE-CCTTCTTSC--CSTTHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEE-eccCcccCC--CCcccHHHHHHHHHHHHHHH
Confidence 3444 467788999999999999863 345555555555555543 565443221 11235777777777766553
No 81
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=40.51 E-value=43 Score=26.70 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
+..+.+.+..+++++||.|.... ..+..+-+..+||++-+
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~---~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATA---AALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCCCccH---HHHHHHHHhcCCCEEee
Confidence 34556777789999999998442 22456667789999875
No 82
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=40.32 E-value=32 Score=27.28 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCccEEEEeCCCC------chhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNIS------PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~------p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.++|.+.+.++|++..=.+ |.+.+..|..+|++++++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 45666677656788888743222 234588889999999987653
No 83
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=39.32 E-value=1.3e+02 Score=23.08 Aligned_cols=73 Identities=5% Similarity=0.072 Sum_probs=42.9
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC---C-------HHHHHhhcCCcCceEEEEEecCCCCCC
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA---S-------KEDLANAGATKRPTCCVLVLTKPTKGE 128 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~---s-------k~eLG~a~G~~~~~svvaI~d~~~~~~ 128 (156)
...|..-+.-|||......+......| ++.+||++.+. + -..||+++|+..
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~~--------------- 112 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQL----EGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQ--------------- 112 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHH----HHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCHH---------------
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCHH---------------
Confidence 456667778888876544333344444 56889998763 2 236788888741
Q ss_pred cchHHHHhhHHHHHHHHHHHHh
Q 031617 129 LGQEEQDKLKADYTLVVEDVKE 150 (156)
Q Consensus 129 ~~~~~~~~~~~~y~e~~~~i~~ 150 (156)
.+++.+..|++.++++.+.+..
T Consensus 113 ~A~~l~~~~~~~~~~~~~~~~~ 134 (283)
T 2r79_A 113 RAEAAELDYRQRLRRQADWIAA 134 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 1234455555555555555544
No 84
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=38.83 E-value=77 Score=22.91 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhh
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 108 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a 108 (156)
.+++.+.|++..+++|++-+|-+.+.-.+.|. --++.++.+-.+.++++.-.-
T Consensus 15 lkeivreikrqgvrvvllysdqdekrrrerle-efekqgvdvrtvedkedfren 67 (162)
T 2l82_A 15 LKEIVREIKRQGVRVVLLYSDQDEKRRRERLE-EFEKQGVDVRTVEDKEDFREN 67 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHH-HHHTTTCEEEECCSHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEEecCchHHHHHHHHH-HHHHcCCceeeeccHHHHHHH
Confidence 35677788888899999999998865455544 346789999999999887653
No 85
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=38.65 E-value=1.2e+02 Score=22.65 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC----C-------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA----S-------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~----s-------k~eLG~a~G~~ 112 (156)
...|..-+.-|||......+......| ++.+||++.+. + -..||+++|+.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQL----RAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHH----HHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 566667778898876653333344444 57889987764 2 23678888864
No 86
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=38.43 E-value=1.1e+02 Score=24.32 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=30.0
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC--------------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS--------------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s--------------k~eLG~a~G~~ 112 (156)
...|..=+.-|||.... ++. .+..+.+..|||++.+.. -..||+++|+.
T Consensus 89 ~E~Ilal~PDLIi~~~~-~~~----~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYV-DRX----TAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESC-CHH----HHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCC-ccc----hHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 34444456778887653 332 234455677999988752 23578888864
No 87
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=38.33 E-value=91 Score=22.21 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=33.1
Q ss_pred HHHHcCCc-cEEEEeCCCCchhHHhhHHHHhHhcCCC--ceeeC-CHHHHHhhcCCc
Q 031617 60 KSIRRGHK-GLCVIAGNISPIDVITHVPILCEESDIP--YIYVA-SKEDLANAGATK 112 (156)
Q Consensus 60 kaI~k~ka-kLVIIA~D~~p~~~~~~l~~lc~~~nIP--~i~v~-sk~eLG~a~G~~ 112 (156)
+.++...+ .+|.|+.|- +. .+..+++++++| +-.+. ...+++++.|..
T Consensus 60 ~~~~~~gv~~vv~Is~d~-~~----~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 60 AAIHGKGVDIIACMAVND-SF----VMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHHHTTCCEEEEEESSC-HH----HHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHCCCCEEEEEeCCC-HH----HHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 34445567 888888873 32 346678889988 76554 467888888874
No 88
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=38.17 E-value=1.3e+02 Score=23.36 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=42.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcC-------------Cccc---------cHHHHHHHHHcCCccEEEEeCCCCchhHH
Q 031617 25 IAKPLAGKKLSKRTLKLVRRAAEHK-------------CLKR---------GVKEVVKSIRRGHKGLCVIAGNISPIDVI 82 (156)
Q Consensus 25 ~a~Pl~~~~l~~ki~~lL~~A~kag-------------~lv~---------G~~~v~kaI~k~kakLVIIA~D~~p~~~~ 82 (156)
+..|-.++.+++.+...++.....| .+-. ++-+..+.++...++.++||.+..+. +
T Consensus 6 vINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~~~-l- 83 (245)
T 3qvl_A 6 VINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGDPG-L- 83 (245)
T ss_dssp EECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCTT-H-
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhH-H-
Confidence 4567788888888877777554211 1111 11222233345569999999998773 3
Q ss_pred hhHHHHhHhcCCCceee
Q 031617 83 THVPILCEESDIPYIYV 99 (156)
Q Consensus 83 ~~l~~lc~~~nIP~i~v 99 (156)
..+-+..+||++-+
T Consensus 84 ---~~lr~~~~iPvigi 97 (245)
T 3qvl_A 84 ---LAARELAQGPVIGI 97 (245)
T ss_dssp ---HHHHHHCSSCEEEH
T ss_pred ---HHHHHHcCCCEECc
Confidence 34446679999876
No 89
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=38.13 E-value=28 Score=26.13 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCccccHHHH-HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 49 KCLKRGVKEV-VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 49 g~lv~G~~~v-~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
..++. ++++ .+.|.+-+-=++++.+ +....-...|..++++ +||++..
T Consensus 19 a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 19 ATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred ceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 34555 7787 8888888777888888 7644456778999999 9999866
No 90
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=37.96 E-value=28 Score=27.80 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=58.6
Q ss_pred hhccCcccCCCCC-hHHHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeC---CCCchhHHhhHHHHhHhcCC
Q 031617 19 IVSLAPIAKPLAG-KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAG---NISPIDVITHVPILCEESDI 94 (156)
Q Consensus 19 ~~~~~~~a~Pl~~-~~l~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~---D~~p~~~~~~l~~lc~~~nI 94 (156)
.....|+..|+.+ +++...+..+.+.|+.+..+..=..++...++ +.+.+.||. |..|. ...++..... +-
T Consensus 51 ~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~l~l~~l~~ei~~ll~--~~~~~~LAT~~~~G~P~--~S~v~f~~~~-g~ 125 (259)
T 3gas_A 51 QTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKE--GFDSVCLATLHPNGHVV--CSYAPLMSDG-KQ 125 (259)
T ss_dssp EEEEEECSSCCCCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSEEEEEEECTTSCEE--EEEEEEEEET-TE
T ss_pred eEEEEeCCCcCCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH--hCCEEEEEeeCcCCCEE--EEEEEEEEEC-CE
Confidence 4567899999954 58899999999999988555432333333333 345555554 45563 3333333333 55
Q ss_pred CceeeCCHHHHHhhcCCcC-ceEEEEEecCCC
Q 031617 95 PYIYVASKEDLANAGATKR-PTCCVLVLTKPT 125 (156)
Q Consensus 95 P~i~v~sk~eLG~a~G~~~-~~svvaI~d~~~ 125 (156)
||+++....+=.+-+-.+- .++++.|-|...
T Consensus 126 ~~iliS~lA~Ht~NL~~np~rvSllviede~~ 157 (259)
T 3gas_A 126 YYIYVSEVAEHFAGLKNNPHNVEVMFLEDESK 157 (259)
T ss_dssp EEEEEETTSHHHHHHHHSTTSEEEEEECCTTT
T ss_pred EEEEEeCchHHHHHHHhCCCeEEEEEEeCccc
Confidence 8888764333233333332 366555655433
No 91
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=37.67 E-value=40 Score=27.13 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
..+.++|++.+.++|++..=.+| .+-+..|..+|+++|+.++.
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 45555664667888887432222 23477788999999997653
No 92
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=37.54 E-value=97 Score=21.17 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=31.5
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-CH---HHHHhhcCCc
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-SK---EDLANAGATK 112 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-sk---~eLG~a~G~~ 112 (156)
..+.+|.|..|-.. +....+..+++++++++..+. +. .++.+..|..
T Consensus 63 ~~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPER-DDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTT-CCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 46778888877432 234566778889999887664 33 3577777764
No 93
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=37.31 E-value=71 Score=21.58 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCc--cEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 56 KEVVKSIRRGHK--GLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 56 ~~v~kaI~k~ka--kLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
-.+.++|++-+. .|.|++.|-. -...|+.+|++.|-.+...
T Consensus 41 l~tkkaL~~l~~Ge~L~Vl~dd~~---a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 41 VETKRALQNMKPGEILEVWIDYPM---SKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp HHHHHHHHTCCTTCEEEEEESSCT---HHHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEE
Confidence 345666666433 3888888853 3788999999999877554
No 94
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=37.22 E-value=40 Score=23.53 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.0
Q ss_pred HHHHHHHcCCccEEEEeCCCCc-------hhHHhhHHHHhHhcCCCceeeC
Q 031617 57 EVVKSIRRGHKGLCVIAGNISP-------IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p-------~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++.++...++++++..-..| ..+-..+..+|+++++|++-+.
T Consensus 94 ~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 94 ALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp HHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 3456666677888877532221 1356778899999999988764
No 95
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=37.09 E-value=38 Score=26.51 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCCccccccCCChhhhhhhhccCcccCCCCChHHHHHHHHHHHHHHhcCC-----------------ccccHHHHHHHHH
Q 031617 1 MGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-----------------LKRGVKEVVKSIR 63 (156)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~Pl~~~~l~~ki~~lL~~A~kag~-----------------lv~G~~~v~kaI~ 63 (156)
||||--.++-++-.---++..+.|..-|.+ .+-..+.+-+..|...-+ -..+.+.+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~iG~~~plsG~~a--~~g~~~~~g~~~a~~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~ 78 (366)
T 3td9_A 1 MGSDKIHHHHHHMRKVVKIAVILPMTGGIS--AFGRMVWEGIQIAHEEKPTVLGEEVELVLLDTRSEKTEAANAAARAID 78 (366)
T ss_dssp ---------------CEEEEEEECCSSTTH--HHHHHHHHHHHHHHHHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCccccchhhhhhcceEEEEEEECCcCcch--hcCHHHHHHHHHHHHHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhc
Confidence 566655555555555556666666666654 233555566666554311 2234455556666
Q ss_pred cCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 64 RGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 64 k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
++++..||-... +. ....+...+++.+||++...
T Consensus 79 ~~~v~~iiG~~~-s~--~~~~~~~~~~~~~iP~i~~~ 112 (366)
T 3td9_A 79 KEKVLAIIGEVA-SA--HSLAIAPIAEENKVPMVTPA 112 (366)
T ss_dssp TSCCSEEEECSS-HH--HHHHHHHHHHHTTCCEEESS
T ss_pred cCCeEEEEccCC-ch--hHHHHHHHHHhCCCeEEecC
Confidence 666777664332 22 35556778899999998764
No 96
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=37.01 E-value=83 Score=25.16 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=48.2
Q ss_pred CcccCCCCChHHHH--------------HHHHHHHHHHhcC-C---cc---------ccHHHHHHHHHcCCccEEEEeCC
Q 031617 23 APIAKPLAGKKLSK--------------RTLKLVRRAAEHK-C---LK---------RGVKEVVKSIRRGHKGLCVIAGN 75 (156)
Q Consensus 23 ~~~a~Pl~~~~l~~--------------ki~~lL~~A~kag-~---lv---------~G~~~v~kaI~k~kakLVIIA~D 75 (156)
.|+..|+++...-+ +++++++..++.. . ++ .|...-.+....--+.-||+ .|
T Consensus 55 iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIi-pD 133 (271)
T 3nav_A 55 MPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLI-AD 133 (271)
T ss_dssp CCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEE-TT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEE-CC
Confidence 57788888765432 6778888877642 1 22 35554444443333555554 68
Q ss_pred CCchhHHhhHHHHhHhcCCCceee
Q 031617 76 ISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
..+.+ ...+...|+++++..+++
T Consensus 134 lp~ee-~~~~~~~~~~~gl~~I~l 156 (271)
T 3nav_A 134 VPTNE-SQPFVAAAEKFGIQPIFI 156 (271)
T ss_dssp SCGGG-CHHHHHHHHHTTCEEEEE
T ss_pred CCHHH-HHHHHHHHHHcCCeEEEE
Confidence 87754 677889999999976654
No 97
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=36.49 E-value=1.1e+02 Score=22.46 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCC---chhHHhhHHHHhHhcCCCceeeC-CHHHHHhhcCCcCceEEEEEecCCC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNIS---PIDVITHVPILCEESDIPYIYVA-SKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~---p~~~~~~l~~lc~~~nIP~i~v~-sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
++..+.+....+.+|.|..|-. |.+....+..+++++++++..+. ...++.+..|... .-.+.|.|+.+
T Consensus 82 ~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-~P~~~liD~~G 154 (218)
T 3u5r_E 82 AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAAC-TPDFFLYDRER 154 (218)
T ss_dssp HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCE-ESEEEEECTTC
T ss_pred HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCC-CCeEEEECCCC
Confidence 3334444434467777776521 11345667788899999886654 4578999988853 33455555443
No 98
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=36.49 E-value=27 Score=27.83 Aligned_cols=43 Identities=7% Similarity=0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCccEEEEeCCCCc-hhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISP-IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p-~~~~~~l~~lc~~~nIP~i~ 98 (156)
..+.+.|.+.+.++|++..-..| ..-.+.|..+|+++|++++.
T Consensus 162 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 205 (425)
T 3ecd_A 162 DQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV 205 (425)
T ss_dssp HHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEE
Confidence 45556665556788888732222 23467899999999997654
No 99
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=36.44 E-value=68 Score=20.98 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=37.5
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCcCceEEEEEecCCC
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
..+.++.|..|.... -...+..+.+++++++-.+ ....+|.+..|.. ..-.+.+.|+.+
T Consensus 66 ~~~~~v~v~~d~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-~~P~~~lid~~G 125 (145)
T 3erw_A 66 DSVKLVTVNLVNSEQ-NQQVVEDFIKANKLTFPIVLDSKGELMKEYHII-TIPTSFLLNEKG 125 (145)
T ss_dssp SSEEEEEEECGGGSS-CHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC-EESEEEEECTTC
T ss_pred CCEEEEEEEccCCcC-CHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC-ccCeEEEEcCCC
Confidence 456777777665222 2455666778889988555 4466888888875 344556665443
No 100
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=35.96 E-value=38 Score=29.61 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCC---ccccHHHHHHHHHc-------CCccEEEEeCCCCchh-------------------------
Q 031617 36 KRTLKLVRRAAEHKC---LKRGVKEVVKSIRR-------GHKGLCVIAGNISPID------------------------- 80 (156)
Q Consensus 36 ~ki~~lL~~A~kag~---lv~G~~~v~kaI~k-------~kakLVIIA~D~~p~~------------------------- 80 (156)
.++.+.++..+-+|+ =-.|......++.- +.-+++|++.|+.+..
T Consensus 210 ~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt 289 (454)
T 3vi3_B 210 EVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYT 289 (454)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEEC
T ss_pred HHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCccc
Confidence 344455555444444 23345555545421 1578999999987630
Q ss_pred --------HHhhHHHHhHhcCCCceeeCCH------HHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHH
Q 031617 81 --------VITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVE 146 (156)
Q Consensus 81 --------~~~~l~~lc~~~nIP~i~v~sk------~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~ 146 (156)
.+..|.....++||-.||.-++ ++|-..+.. +.++++....+. ..+-..+.|+++.+
T Consensus 290 ~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsN-----iv~LI~~aY~~i~S 360 (454)
T 3vi3_B 290 MSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK----SAVGTLSANSSN-----VIQLIIDAYNSLSS 360 (454)
T ss_dssp CTTTSCCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHSTT----EEEEEECTTCTT-----HHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhCCC----ceeeEccccchh-----HHHHHHHHHHHhhe
Confidence 1556777778899988886544 456666643 578888655433 35556778888776
Q ss_pred HH
Q 031617 147 DV 148 (156)
Q Consensus 147 ~i 148 (156)
.|
T Consensus 361 ~V 362 (454)
T 3vi3_B 361 EV 362 (454)
T ss_dssp CE
T ss_pred EE
Confidence 54
No 101
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=35.89 E-value=92 Score=20.44 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=33.4
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCC-ceeeCC-HHH--HHhhcCCcCceEEEEEecCCC
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIP-YIYVAS-KED--LANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP-~i~v~s-k~e--LG~a~G~~~~~svvaI~d~~~ 125 (156)
..+.++.|..|-++. .+..+.++++++ +..+.+ ... +....|... .-.+.+.|+.+
T Consensus 63 ~~~~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~-~P~~~lid~~G 122 (148)
T 3hcz_A 63 KGIQVYAANIERKDE----EWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYA-TPVLYVLDKNK 122 (148)
T ss_dssp GTEEEEEEECCSSSH----HHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCS-SCEEEEECTTC
T ss_pred CCEEEEEEEecCCHH----HHHHHHHHcCCCCceEEeccccchhHHHhcCcCC-CCEEEEECCCC
Confidence 347777777775553 445666788887 544433 333 888888753 33456665444
No 102
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=35.66 E-value=1e+02 Score=22.38 Aligned_cols=47 Identities=4% Similarity=-0.121 Sum_probs=28.9
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC-C---HHHHHhhcCCc
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA-S---KEDLANAGATK 112 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~-s---k~eLG~a~G~~ 112 (156)
+.+.+|.|..|-.. +....+..+++++++++..+. + ..++.+.+|..
T Consensus 77 ~~v~vv~Is~D~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~ 127 (200)
T 2b7k_A 77 ITLQPLFITCDPAR-DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp CCCEEEEEESCTTT-CCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred CceEEEEEECCCCC-CCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcE
Confidence 46888888887421 224456677788888776553 3 34566666664
No 103
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=35.53 E-value=54 Score=26.69 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=39.1
Q ss_pred CCCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcCCcCceEEEEEe--cCCCCCCcchHHHHhhHHHHHHHHHHHHh
Q 031617 75 NISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGATKRPTCCVLVL--TKPTKGELGQEEQDKLKADYTLVVEDVKE 150 (156)
Q Consensus 75 D~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G~~~~~svvaI~--d~~~~~~~~~~~~~~~~~~y~e~~~~i~~ 150 (156)
+.+|. -+..|..++++++|+++|+.. ...+.+.+-...++.++.++ |+-.... ..-..|-+.+......|.+
T Consensus 236 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~v~~~l~~d~l~~~~---~~~~~Y~~~m~~n~~~l~~ 311 (321)
T 1xvl_A 236 QFTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEE---GPVPTFLDLLEYDARVITN 311 (321)
T ss_dssp SCCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEEEEECSSCCCCSS---SSCCSHHHHHHHHHHHHHT
T ss_pred CCCHH-HHHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCceeeeecCCccCCCC---CCccCHHHHHHHHHHHHHH
Confidence 34454 467788899999999999842 22333333233333344332 4322111 1124677777776666654
No 104
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=35.46 E-value=71 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++.+.|.+-+-=++++..-+........+..++++.++|++...
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 3445555554443344444445433457788999999999997653
No 105
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=35.23 E-value=1.5e+02 Score=23.32 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=29.6
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC---------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS---------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s---------k~eLG~a~G~~ 112 (156)
...|..-+.-|||.... .+ .....| ++.+||++.+.. -..||+++|+.
T Consensus 109 ~E~i~al~PDLIi~~~~-~~-~~~~~L----~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LK-KTADTL----ESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GH-HHHHHH----HHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-ch-hHHHHH----HHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 34555566778777543 22 233333 577899988752 23678888874
No 106
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=34.93 E-value=25 Score=28.24 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=37.7
Q ss_pred CchhHHhhHHHHhHhcCCCceeeCC------HHHHHhhcCCcCceEEEE-EecCCCCCCcchHHHHhhHHHHHHHHHHHH
Q 031617 77 SPIDVITHVPILCEESDIPYIYVAS------KEDLANAGATKRPTCCVL-VLTKPTKGELGQEEQDKLKADYTLVVEDVK 149 (156)
Q Consensus 77 ~p~~~~~~l~~lc~~~nIP~i~v~s------k~eLG~a~G~~~~~svva-I~d~~~~~~~~~~~~~~~~~~y~e~~~~i~ 149 (156)
+|. -+..|..++++++|+++|+.+ .+.|.+..|.+ +++ +.+.+.... ...-..|-+.+..-...|.
T Consensus 217 s~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~----v~~~~~~~~l~~~--~~~~~~Y~~~m~~n~~~l~ 289 (294)
T 3hh8_A 217 TPD-QISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIP----IYSEIFTDSIAKK--GKPGDSYYAMMKWNLDKIS 289 (294)
T ss_dssp CHH-HHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCC----EEEEECSSSCCCT--TSTTCSHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCc----EEeeecCcccCCC--CCCcccHHHHHHHHHHHHH
Confidence 444 477788999999999999852 23555555553 342 332222111 0123457776666555554
Q ss_pred h
Q 031617 150 E 150 (156)
Q Consensus 150 ~ 150 (156)
+
T Consensus 290 ~ 290 (294)
T 3hh8_A 290 E 290 (294)
T ss_dssp H
T ss_pred H
Confidence 3
No 107
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=34.66 E-value=32 Score=27.71 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 58 VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 58 v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
..+.+.+..+++++||.|.... -.+..+-+..+||++-+-
T Consensus 78 ~~~~L~~~g~d~IVIACNTa~~---~al~~lr~~~~iPvigii 117 (274)
T 3uhf_A 78 ALDFFEQFQIDMLIIACNTASA---YALDALRAKAHFPVYGVI 117 (274)
T ss_dssp HHHHHTTSCCSEEEECCHHHHH---HSHHHHHHHCSSCEECSH
T ss_pred HHHHHHHCCCCEEEEeCCChhH---HHHHHHHHhcCCCEEcCC
Confidence 4456777789999999998442 224566677899998753
No 108
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=34.60 E-value=51 Score=23.27 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=30.6
Q ss_pred cHHHHHHHHHcCCccEEEEeCCCCc-----------hhHHhhHHHHhHhcCCCceeeC
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGNISP-----------IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D~~p-----------~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+.+.++.+++..++++++..-..| ..+-..+..+|++++++|+-+.
T Consensus 118 ~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~ 175 (216)
T 3rjt_A 118 TLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQ 175 (216)
T ss_dssp HHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcH
Confidence 3445556666667888888522111 1356678888999999987664
No 109
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=34.38 E-value=17 Score=31.05 Aligned_cols=58 Identities=21% Similarity=0.049 Sum_probs=37.7
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC----CcCceEEEEEecCCCCC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGA----TKRPTCCVLVLTKPTKG 127 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G----~~~~~svvaI~d~~~~~ 127 (156)
.+.+||.|.|. | .+-..+...|++++||+..+.+ -+|+...- ...+ -+++|+++|.+-
T Consensus 72 ~~~lVi~at~~-~-~~n~~i~~~a~~~~i~vn~~d~-~e~~~~~~pa~~~~~~-l~iaIsT~Gksp 133 (457)
T 1pjq_A 72 SCWLAIAATDD-D-TVNQRVSDAAESRRIFCNVVDA-PKAASFIMPSIIDRSP-LMVAVSSGGTSP 133 (457)
T ss_dssp TCSEEEECCSC-H-HHHHHHHHHHHHTTCEEEETTC-TTSSSEECCEEEEETT-EEEEEECTTSCH
T ss_pred CccEEEEcCCC-H-HHHHHHHHHHHHcCCEEEECCC-cccCceEeeeEEEeCC-eEEEEECCCCCh
Confidence 47799999886 3 2567788999999999654443 44543220 1112 378898777643
No 110
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=34.15 E-value=50 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHcC------CccEEEEeCC-----CCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRG------HKGLCVIAGN-----ISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~------kakLVIIA~D-----~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.+.|.+. +.++|++..- +-|.+.++.|..+|+++|+.++.
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 45666666655 3788888643 22224578899999999996644
No 111
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=34.01 E-value=33 Score=27.26 Aligned_cols=44 Identities=5% Similarity=-0.035 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc-hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP-IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p-~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.++|...+.++|++..-..| ..-.+.|..+|+++|++++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEE
Confidence 345666776656888888432222 11266789999999997654
No 112
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=33.46 E-value=54 Score=26.69 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHHHHHHc---CCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCceee
Q 031617 55 VKEVVKSIRR---GHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 55 ~~~v~kaI~k---~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~v 99 (156)
...+.++|.. .+.++|++..=.+ +.+.++.|..+|+++||+++.=
T Consensus 169 ~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 169 LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3455556653 3677888753111 2356788999999999987653
No 113
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=33.43 E-value=25 Score=22.54 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.7
Q ss_pred HHHhHhcCCCceeeCCHHHHHh
Q 031617 86 PILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 86 ~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
.++|++++||+-.++++..+.+
T Consensus 29 vaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 29 CSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp HHHHHHTTCCGGGTSCHHHHHH
T ss_pred hhhhhhcCCCHHHHhhHHHHHh
Confidence 5899999999999998876654
No 114
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=32.40 E-value=38 Score=27.88 Aligned_cols=40 Identities=5% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 58 VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 58 v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+++.+-..+.-.+|++.+..|. ..+..+|++++||+....
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 5556666788899999998874 356789999999987654
No 115
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=32.34 E-value=49 Score=26.10 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHHc-CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 56 KEVVKSIRR-GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 56 ~~v~kaI~k-~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+..+.+.+ ..+++++||.|..+. + .+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~-~--~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATA-I--ALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhH-H--HHHHHHHHCCCCEEcc
Confidence 344556666 779999999998653 1 2455557789999874
No 116
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=32.23 E-value=52 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+..+.+.+..+++++||.|..+. + .+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~-~--~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATA-V--VLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchhhH-H--HHHHHHHhCCCCEEee
Confidence 344466667779999999998552 1 2555667789999874
No 117
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=31.91 E-value=39 Score=30.87 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCC---ccccHHHHHHHH--------HcCCccEEEEeCCCCchh------------------------
Q 031617 36 KRTLKLVRRAAEHKC---LKRGVKEVVKSI--------RRGHKGLCVIAGNISPID------------------------ 80 (156)
Q Consensus 36 ~ki~~lL~~A~kag~---lv~G~~~v~kaI--------~k~kakLVIIA~D~~p~~------------------------ 80 (156)
.++.+.++..+-+|. =-.|...+..++ ++ ..+|+|++.|+.+..
T Consensus 193 ~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y 271 (687)
T 3k6s_B 193 NQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLY 271 (687)
T ss_dssp HHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceecCCCCccccCCCcc
Confidence 344555555554554 122455555554 33 679999999997530
Q ss_pred ---------HHhhHHHHhHhcCCCceeeCCHH------HHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHH
Q 031617 81 ---------VITHVPILCEESDIPYIYVASKE------DLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVV 145 (156)
Q Consensus 81 ---------~~~~l~~lc~~~nIP~i~v~sk~------eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~ 145 (156)
.+..|...-.++||..+|+-+.. +|-..++. +.++++....+.. .+-..+.|+++.
T Consensus 272 ~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i~~----s~v~~L~~dSsni-----~~li~~ay~~i~ 342 (687)
T 3k6s_B 272 KRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPK----SAVGELSEDSSNV-----VQLIKNAYNKLS 342 (687)
T ss_dssp SSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSS----CCEEECCTTCCSC-----GGGTTTHHHHHS
T ss_pred ccccccCCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhcCC----ceeeeeccccHHH-----HHHHHHHHHhhh
Confidence 04456666678899888775543 45555543 4567765443322 333456666665
Q ss_pred HHH
Q 031617 146 EDV 148 (156)
Q Consensus 146 ~~i 148 (156)
+.|
T Consensus 343 s~v 345 (687)
T 3k6s_B 343 SRV 345 (687)
T ss_dssp SCC
T ss_pred cee
Confidence 443
No 118
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=31.69 E-value=55 Score=25.84 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCccEEEEeC------CCCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAG------NISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~------D~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.++|.. +.++|++.. .+-|.+....|..+|+++++.++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 4555666655 566776642 222334578889999999986653
No 119
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=31.35 E-value=81 Score=22.43 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCccEEEEeCCCCch-hH--HhhHHHHhHhcCCCceeeC--C-------HHHHHhhcCCc
Q 031617 65 GHKGLCVIAGNISPI-DV--ITHVPILCEESDIPYIYVA--S-------KEDLANAGATK 112 (156)
Q Consensus 65 ~kakLVIIA~D~~p~-~~--~~~l~~lc~~~nIP~i~v~--s-------k~eLG~a~G~~ 112 (156)
+..+.|||-+|-.+. +- .......+++.+|++..++ + ..+|-.+.+..
T Consensus 109 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~ 168 (198)
T 1n3y_A 109 DAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKP 168 (198)
T ss_dssp TSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSS
T ss_pred CCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCC
Confidence 456788888887653 11 2334556688999886553 2 57787776654
No 120
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=31.24 E-value=1.3e+02 Score=23.65 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=26.5
Q ss_pred HHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 61 SIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 61 aI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+++..+++++||.|.... -.+..+-+..+||++-+.
T Consensus 79 ll~~~g~d~IviaCNTas~---~~l~~lr~~~~iPVigi~ 115 (285)
T 2jfn_A 79 VQERYPLALAVVACNTAST---VSLPALREKFDFPVVGVV 115 (285)
T ss_dssp HHHHSCCSEEEECCHHHHH---HHHHHHHHHCSSCEECCC
T ss_pred HHHhCCCCEEEEECccccH---HHHHHHHHhCCCCEEehH
Confidence 3455679999999998552 134556677899998765
No 121
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=31.07 E-value=63 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP 78 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p 78 (156)
...+++.+...++.+||+++|...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 455666666668999999999864
No 122
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=30.64 E-value=97 Score=22.92 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCchh-------------------------HHhhHHHHhHhcCCC---ceeeCCH
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPID-------------------------VITHVPILCEESDIP---YIYVASK 102 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~~-------------------------~~~~l~~lc~~~nIP---~i~v~sk 102 (156)
+.-|+.++++.+++...++.++.+...... --..+...|++.|++ +++|++.
T Consensus 96 ~~pg~~~ll~~L~~~g~~i~i~t~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l~VgDs 175 (243)
T 4g9b_A 96 VLPGIRSLLADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDA 175 (243)
T ss_dssp BCTTHHHHHHHHHHTTCEEEECCCCTTHHHHHHHTTCGGGCSEECCGGGCSSCTTSTHHHHHHHHHHTSCGGGEEEEESS
T ss_pred ccccHHHHHHhhhcccccceecccccchhhhhhhhhhccccccccccccccCCCCcHHHHHHHHHHcCCChHHEEEEcCC
Confidence 667888888888777766666554221100 012355667788886 3677753
Q ss_pred -HHH--HhhcCCcCceEEEEEecCCCC
Q 031617 103 -EDL--ANAGATKRPTCCVLVLTKPTK 126 (156)
Q Consensus 103 -~eL--G~a~G~~~~~svvaI~d~~~~ 126 (156)
..+ +++.|. .+|+|..+...
T Consensus 176 ~~di~aA~~aG~----~~I~V~~g~~~ 198 (243)
T 4g9b_A 176 QAGIDAINASGM----RSVGIGAGLTG 198 (243)
T ss_dssp HHHHHHHHHHTC----EEEEESTTCCS
T ss_pred HHHHHHHHHcCC----EEEEECCCCCc
Confidence 333 335554 46888765443
No 123
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=30.55 E-value=42 Score=23.25 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=26.7
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
.+.++++.-|++..+-...+.....+.++|++.+.+|.+|-.
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 467777777775432222222333457899999999888754
No 124
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=30.46 E-value=99 Score=22.92 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHHHHcC--CccEEEEeCCCCch---hHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRG--HKGLCVIAGNISPI---DVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~--kakLVIIA~D~~p~---~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...+++.+.+. ++.+||+++|.... .-...+..+.++.++|+..+.
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~ 78 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIP 78 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34555555543 57899999997531 112334444555688887775
No 125
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=30.27 E-value=1.1e+02 Score=23.12 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchh---------HHhhHHHHhHhcCCCceeeCCHHHH
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPID---------VITHVPILCEESDIPYIYVASKEDL 105 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~---------~~~~l~~lc~~~nIP~i~v~sk~eL 105 (156)
+++++.+.+.++.+||+++|..... ....+..+-.+.++|+..+...-+.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3444555557899999999986532 1233445555678999888766655
No 126
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=30.26 E-value=80 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHHHcC--CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRG--HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~--kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...+++++.++ ...++.+-+|- |. ..+..+|+++|||+..+.
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~-~~---~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDR-PG---AKVIERAARENVPAFVFS 60 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESS-TT---CHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCC-CC---cHHHHHHHHcCCCEEEeC
Confidence 44667777777 45666555552 21 135678999999997653
No 127
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=30.22 E-value=1.7e+02 Score=21.80 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC---------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS---------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s---------k~eLG~a~G~~ 112 (156)
...|..-+.-|||......+ ..... .++.+||++.+.. -..||+++|+.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~-~~~~~----L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKD-EMQPF----YKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHH-HHHHH----HHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCH-HHHHH----HHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 45566667888887543222 23333 3567899877642 23578888864
No 128
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.09 E-value=97 Score=18.96 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHh---cCCCceeeC
Q 031617 52 KRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEE---SDIPYIYVA 100 (156)
Q Consensus 52 v~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~---~nIP~i~v~ 100 (156)
+....+....+.+....++|+--+....+-...+..+.+. .++|++.+.
T Consensus 31 ~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 31 LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4456777888888888999987665433333334444444 578887764
No 129
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.07 E-value=55 Score=26.09 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC------HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHH
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS------KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVK 149 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s------k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~ 149 (156)
.+|. -+..|..++++++|+++|+.+ .+.|.+..|.+ ++ .+|+-.. .|.+.+......|.
T Consensus 221 ps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~----v~-~ld~l~~---------~Y~~~m~~n~~~l~ 285 (291)
T 1pq4_A 221 PSAQ-ELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG----VE-LLDPLAA---------DWSSNLKAVAQKIA 285 (291)
T ss_dssp CCHH-HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE----EE-EECTTCS---------SHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe----EE-EEcCchh---------hHHHHHHHHHHHHH
Confidence 4454 467788999999999999742 23454444543 33 3554431 57777766666665
Q ss_pred h
Q 031617 150 E 150 (156)
Q Consensus 150 ~ 150 (156)
+
T Consensus 286 ~ 286 (291)
T 1pq4_A 286 N 286 (291)
T ss_dssp H
T ss_pred H
Confidence 4
No 130
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=29.60 E-value=57 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 60 KSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 60 kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
+.+.+..+++++||.|..+. + .+..+-+..+||++-+
T Consensus 56 ~~L~~~g~d~iviaCNTa~~-~--~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 56 DFFKPHEIELLIVACNTASA-L--ALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHGGGCCSCEEECCHHHHH-H--THHHHHHHCSSCEECS
T ss_pred HHHHHCCCCEEEEeCchhhH-H--HHHHHHHhCCCCEEee
Confidence 34556679999999998552 1 3566667789999874
No 131
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=29.56 E-value=84 Score=25.42 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcCCcCceEEE--EEecCCCCCCcchHHHHhhHHHHHHHHHHHHh
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGATKRPTCCV--LVLTKPTKGELGQEEQDKLKADYTLVVEDVKE 150 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G~~~~~svv--aI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~ 150 (156)
.+|. -+..|..++++++|+++|+.+ ...+.+.+-+..++-+. ..+|+-.... ..-..|-+.+..-...|.+
T Consensus 223 Ps~~-~l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~~~l~~d~l~~~~---~~~~~Y~~~m~~n~~~l~~ 297 (307)
T 3ujp_A 223 FTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEE---GPVPTFLDLLEYDARVITN 297 (307)
T ss_dssp CCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEEEEECSSCCCCSS---SSCSSHHHHHHHHHHHHHT
T ss_pred CCHH-HHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCceeeeeeccCCCCCC---CCccCHHHHHHHHHHHHHH
Confidence 3444 477788999999999999853 23444444444444443 2344322111 1123576666666665544
No 132
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=29.39 E-value=61 Score=26.52 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchh---------HHhhHHHHhHhcCCCceeeCCHH
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPID---------VITHVPILCEESDIPYIYVASKE 103 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~---------~~~~l~~lc~~~nIP~i~v~sk~ 103 (156)
...+++.+...++-+||+|+|.-... +...|..+. ..++|++.+...-
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~GNH 105 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVAGNH 105 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECCCGG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEcCCC
Confidence 44556666677899999999974211 122222222 3479988875443
No 133
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=29.35 E-value=52 Score=27.98 Aligned_cols=35 Identities=9% Similarity=-0.046 Sum_probs=25.2
Q ss_pred HcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 63 RRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 63 ~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
++-+++-|+||+|.++ .+..|..+=...+|+++..
T Consensus 276 k~~~lksVFIATDa~~--~~~ELk~~L~~~~v~vv~~ 310 (362)
T 3zy2_A 276 GSIGAKSVFVASDKDH--MIDEINEALKPYEIEAHRQ 310 (362)
T ss_dssp HHHTCSEEEEEESSCC--CHHHHHHHHGGGTCCEECC
T ss_pred HhcCCcEEEEecCCHH--HHHHHHHHhhccCceEEEe
Confidence 3337999999999877 3566665556668887765
No 134
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=29.18 E-value=98 Score=20.95 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHcCCccEEEE--eCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 57 EVVKSIRRGHKGLCVI--AGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 57 ~v~kaI~k~kakLVII--A~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...+.+++|+- ++++ ++|-.-......+...|.+.+|++..++
T Consensus 71 ~i~~~~~~G~~-V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 71 QVIELLEEGSD-VALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHHHHTTCC-EEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHCCCe-EEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 44455555543 3333 3553333334456666777888876654
No 135
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=29.14 E-value=95 Score=24.69 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+..+.+.+..+++++||.|.... . .+..+-+..+||++-+.
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTas~-~--~l~~lr~~~~iPVigii 117 (290)
T 2vvt_A 76 WEMADFLLKKRIKMLVIACNTATA-V--ALEEIKAALPIPVVGVI 117 (290)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEESS
T ss_pred HHHHHHHHHCCCCEEEEeCcchhH-H--HHHHHHHhCCCCEEccc
Confidence 345566667779999999998542 1 35566677899998753
No 136
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=28.83 E-value=73 Score=25.68 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=31.3
Q ss_pred cHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
..+.+.+.|..+++..+|.+...+...+...+..+|..++||.+...
T Consensus 51 ~~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 51 IITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 34566666766777666665554443344557889999999998654
No 137
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=28.48 E-value=93 Score=24.39 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+..+.+.+..+++++||.|.... + .+..+-+..+||++-+
T Consensus 64 ~~~~~~L~~~g~d~iviaCNTas~-~--~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 64 WELVNFLLTQNVKMIVFACNTATA-V--AWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCchHhH-H--HHHHHHHhCCCCEEec
Confidence 334455666779999999998542 2 2455557789999874
No 138
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=28.06 E-value=71 Score=21.75 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=35.5
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC---HHHHHhhcCCcC---ceE--EEEEecCCC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS---KEDLANAGATKR---PTC--CVLVLTKPT 125 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s---k~eLG~a~G~~~---~~s--vvaI~d~~~ 125 (156)
.+.+|.|..|. + ..+..+++++++++..+.+ ..++.+..|... ... ...|.|+.+
T Consensus 70 ~~~vv~is~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G 132 (160)
T 1xvw_A 70 DSAALAISVGP-P----PTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSG 132 (160)
T ss_dssp SEEEEEEESCC-H----HHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTS
T ss_pred CcEEEEEeCCC-H----HHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCC
Confidence 47778887773 3 2456677888888866655 678888888741 233 455665443
No 139
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=27.89 E-value=48 Score=26.36 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhc-CCCceee
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEES-DIPYIYV 99 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~-nIP~i~v 99 (156)
+..+.+.+..+++++||.|.... -.+..+-+.. +||++-+
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~---~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISA---IAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHH---HHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHCCCCEEEEeCCChHH---HHHHHHHHhcCCCCEEec
Confidence 34556777789999999997442 2345555677 8999874
No 140
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=27.87 E-value=68 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.++| ..+.++|++..=-+| .+-+..|..+|++++++++.
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666666 556788877432222 23477778889999987653
No 141
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=27.80 E-value=76 Score=25.23 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++++.|++.+++.||.-...++. +.+. ++++.|+|++++.
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~-~~~~---ia~~~g~~v~~ld 267 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTK-SSEA---IAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCH-HHHH---HHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHcCCeEEEEc
Confidence 3467777888999999999998885 5554 4789999988765
No 142
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=27.65 E-value=42 Score=25.14 Aligned_cols=69 Identities=6% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHcCC----cc--EEEEeCCCC--chhHHhhHHHHhHhcCCCce
Q 031617 28 PLAGKKLSKRTLKLVRRAAEHK--CLKRGVKEVVKSIRRGH----KG--LCVIAGNIS--PIDVITHVPILCEESDIPYI 97 (156)
Q Consensus 28 Pl~~~~l~~ki~~lL~~A~kag--~lv~G~~~v~kaI~k~k----ak--LVIIA~D~~--p~~~~~~l~~lc~~~nIP~i 97 (156)
|++.+ ...+...|....-.| .+..|+....+.+++.. .+ ++|+.+|.+ +.+ ...+...+++.+|.+.
T Consensus 63 plT~d--~~~i~~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~-~~~~a~~lk~~gi~v~ 139 (192)
T 2x5n_A 63 TLTRD--YGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKN-LIRLAKRMKKNNVAID 139 (192)
T ss_dssp EEESC--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHH-HHHHHHHHHHTTEEEE
T ss_pred CCCCC--HHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchh-HHHHHHHHHHCCCEEE
Confidence 66655 345555554422233 37778888888887742 33 566777653 443 4456677889999886
Q ss_pred ee
Q 031617 98 YV 99 (156)
Q Consensus 98 ~v 99 (156)
.+
T Consensus 140 ~I 141 (192)
T 2x5n_A 140 II 141 (192)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 143
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=27.58 E-value=33 Score=23.68 Aligned_cols=45 Identities=4% Similarity=-0.010 Sum_probs=29.9
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC-H---HHHHhhcCC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS-K---EDLANAGAT 111 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s-k---~eLG~a~G~ 111 (156)
.+.+|.|..|-.+ +....+..+++++++++..+.+ . .++.+.+|.
T Consensus 72 ~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPER-DPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTT-CCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCC-CCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 5777777766433 2355677788899999877654 4 366666664
No 144
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=27.57 E-value=55 Score=24.12 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
..+++.+...++.+||+++|....+..+.+ .+.++|+.+|.
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~~~~~~l----~~l~~~~~~V~ 82 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSLFVIKEF----ENLNANIIATY 82 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCSTHHHHHG----GGCSSEEEEEC
T ss_pred HHHHHHHhhcCCCEEEECCCCCCHHHHHHH----HhcCCCEEEEe
Confidence 344455555678888888886422333333 23356776664
No 145
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=27.56 E-value=44 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCch-hHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPI-DVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~-~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.+.|...+.++|++.....+. .-.+.|..+|+++|++++.
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 196 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 196 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 3455566654346777774222222 1367889999999997654
No 146
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=27.45 E-value=1.4e+02 Score=19.85 Aligned_cols=57 Identities=5% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee-CCHHHHHhhcCCcCceEEEEEecCCC
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV-ASKEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v-~sk~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
..+.++.|..|.+ -...+..+.+++++++-.+ ....++.+..|... .-.+.|.|..+
T Consensus 60 ~~~~~v~v~~d~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~P~~~lid~~G 117 (154)
T 3kcm_A 60 KPFRMLCVSIDEG---GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG-VPETFVIDRHG 117 (154)
T ss_dssp SSEEEEEEECCTT---HHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS-BCEEEEECTTS
T ss_pred CCeEEEEEEcCCc---chHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC-CCeEEEECCCC
Confidence 3466666666654 2345667778888888554 45667888888753 33455555443
No 147
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=27.43 E-value=92 Score=22.11 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=15.8
Q ss_pred HHhhHHHHhHhcCCCceeeC
Q 031617 81 VITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 81 ~~~~l~~lc~~~nIP~i~v~ 100 (156)
+-..+..+|++++++++-+.
T Consensus 164 ~n~~~~~~a~~~~v~~iD~~ 183 (216)
T 2q0q_A 164 LARVYSALASFMKVPFFDAG 183 (216)
T ss_dssp HHHHHHHHHHHHTCCEEEGG
T ss_pred HHHHHHHHHHHcCCcEEchh
Confidence 45567889999999987664
No 148
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=27.23 E-value=84 Score=27.75 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
++..++.|.+-.+.+||++.++++. ..| ++.++||-.+...++.+|-+
T Consensus 284 l~~~v~~I~~~g~~vvi~~~~I~~~--al~---~L~~~gI~av~~v~~~~ler 331 (568)
T 3p9d_H 284 IDAMMKEIADMGVECIVAGAGVGEL--ALH---YLNRYGILVLKVPSKFELRR 331 (568)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCCHH--HHH---HHHHHTCEEECCCCHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcChH--HHH---HHHHCCeEEEecCCHHHHHH
Confidence 3456667777778999999999874 333 23456776666555554443
No 149
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.06 E-value=79 Score=24.65 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.++|.+.+.++|++..=.+| .+-+..|..+|+++|++++.
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 566677776567888887543222 13477888999999986653
No 150
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=27.04 E-value=35 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.170 Sum_probs=21.7
Q ss_pred hHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 80 DVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 80 ~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
.+-.+|...++++|||++.-. .|.+++-
T Consensus 27 ~~A~~I~~~A~e~~VPi~e~~---~LAr~L~ 54 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIEDI---PLARSLD 54 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCH---HHHHHHH
Confidence 367889999999999987655 5666543
No 151
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=27.00 E-value=87 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHH
Q 031617 58 VVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKED 104 (156)
Q Consensus 58 v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~e 104 (156)
.++.|.+-.+.+||++.|+++.. .| ++.+++|+.+.-.++.+
T Consensus 284 ~le~I~~~g~~lvI~~~~I~~~a--l~---~L~~~~I~av~~~~k~~ 325 (559)
T 3p9d_A 284 RVKKIIDAGAQVVLTTKGIDDLC--LK---EFVEAKIMGVRRCKKED 325 (559)
T ss_dssp HHHHHHTTCCSEEEESSCCCGGG--TH---HHHHTTCEEESSCCHHH
T ss_pred HHHHHHhhCCCEEEEcCCCCHHH--HH---HHHHcCCceEccCCHHH
Confidence 34445555578999999998742 22 23455665554434433
No 152
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=26.97 E-value=99 Score=21.91 Aligned_cols=63 Identities=8% Similarity=-0.127 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHh-cC--CccccHHHHHHHHHc-------CCccEEEEeCCCCchhH--HhhHHHHhHhcCCCcee
Q 031617 36 KRTLKLVRRAAE-HK--CLKRGVKEVVKSIRR-------GHKGLCVIAGNISPIDV--ITHVPILCEESDIPYIY 98 (156)
Q Consensus 36 ~ki~~lL~~A~k-ag--~lv~G~~~v~kaI~k-------~kakLVIIA~D~~p~~~--~~~l~~lc~~~nIP~i~ 98 (156)
+.+.+.|..... .| .+-.|++.+.+.+.. +..+.+||-+|-.+.+- .......+++.+|++..
T Consensus 82 ~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~ 156 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTV 156 (178)
T ss_dssp HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEE
Confidence 444455544332 22 367778888777632 34688999999876432 23334444555555433
No 153
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=26.84 E-value=55 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
......+..+.+++..+++++||.|.... .+..+-+..+||++-+.
T Consensus 84 ~~~~l~~~~~~L~~~Gad~IVIaCNTah~----~l~~lr~~~~iPvigii 129 (268)
T 3s81_A 84 PYRYLERYLHMLEDAGAECIVIPCNTAHY----WFDDLQNVAKARMISIL 129 (268)
T ss_dssp SHHHHHHHHHHHHHTTCSEEECSCSGGGG----GHHHHHHHCSSEEECHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCHHH----HHHHHHHHCCCCEEccc
Confidence 33445666778888889999999998542 34556677899988753
No 154
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.77 E-value=46 Score=26.94 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=39.0
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC--H----HHHHhhcCCcCceEEEEEecCCCCCCc-chHHHHhhHHHHHHHHHHH
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS--K----EDLANAGATKRPTCCVLVLTKPTKGEL-GQEEQDKLKADYTLVVEDV 148 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s--k----~eLG~a~G~~~~~svvaI~d~~~~~~~-~~~~~~~~~~~y~e~~~~i 148 (156)
.+|. -+..|..++++++|+++|+.+ . +.|.+..|. .+ +.+++...-.. +...-..|-+.+......|
T Consensus 223 ps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~----~v-~~l~~l~~~~~~~~~~~~~Y~~~m~~n~~~l 296 (312)
T 2o1e_A 223 PSAA-SLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGA----KT-EVLNTLEGLSKEEQDKGLGYIDIMKQNLDAL 296 (312)
T ss_dssp CCHH-HHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCC----EE-ECCCCTTCCCHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCC----cE-EEeccccccccccCCcccCHHHHHHHHHHHH
Confidence 3444 467788899999999999852 2 344444443 33 34554432220 0011236777777666666
Q ss_pred Hh
Q 031617 149 KE 150 (156)
Q Consensus 149 ~~ 150 (156)
.+
T Consensus 297 ~~ 298 (312)
T 2o1e_A 297 KD 298 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 155
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=26.35 E-value=85 Score=25.31 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHc-----CCccEEEEeCCCC------chhHHhhHHHHhHhcCCCce
Q 031617 56 KEVVKSIRR-----GHKGLCVIAGNIS------PIDVITHVPILCEESDIPYI 97 (156)
Q Consensus 56 ~~v~kaI~k-----~kakLVIIA~D~~------p~~~~~~l~~lc~~~nIP~i 97 (156)
..+.++|.+ .+.++|++..=.+ +.+-...|..+|+++++.++
T Consensus 176 ~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 228 (435)
T 3piu_A 176 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228 (435)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 444555543 2577877763222 33457888899999998664
No 156
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=26.18 E-value=2e+02 Score=21.29 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=29.5
Q ss_pred HHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC---------HHHHHhhcCCc
Q 031617 59 VKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS---------KEDLANAGATK 112 (156)
Q Consensus 59 ~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s---------k~eLG~a~G~~ 112 (156)
...|..-+.-|||......+....+.| ++.+||++.+.. -..||+++|+.
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~~ 108 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQL----ASLGIKVMWVDATSIEQIANALRQLAPWSPQP 108 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHH----HHHTCCEEECCCCSHHHHHHHHHHHGGGCSCH
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHH----HHCCCcEEEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 455666678888874322222334444 477899887642 22567777764
No 157
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.18 E-value=1.3e+02 Score=22.42 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=40.3
Q ss_pred ccCCCCChHHHHHHHHHHHH-HHhcCC-c-cc-------cHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCC
Q 031617 25 IAKPLAGKKLSKRTLKLVRR-AAEHKC-L-KR-------GVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDI 94 (156)
Q Consensus 25 ~a~Pl~~~~l~~ki~~lL~~-A~kag~-l-v~-------G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nI 94 (156)
+..|-.+...-..+++-+.. +.+.|. + +. ...+.++.+..+++.-+|+.....+ . ....+.+.+|
T Consensus 12 vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~----~~~~l~~~~i 86 (276)
T 3jy6_A 12 VIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNP-Q----TVQEILHQQM 86 (276)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCH-H----HHHHHHTTSS
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcH-H----HHHHHHHCCC
Confidence 33444455566666665555 444554 1 11 1234566666677766666654332 2 3344567899
Q ss_pred CceeeCC
Q 031617 95 PYIYVAS 101 (156)
Q Consensus 95 P~i~v~s 101 (156)
|++++..
T Consensus 87 PvV~i~~ 93 (276)
T 3jy6_A 87 PVVSVDR 93 (276)
T ss_dssp CEEEESC
T ss_pred CEEEEec
Confidence 9988764
No 158
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=26.18 E-value=1.4e+02 Score=21.37 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCCCChHHHHHHHHHHHHHHh-cC---CccccHHHHHHHHH-------cCCccEEEEeCCCCchhH--HhhHHHHhHhcC
Q 031617 27 KPLAGKKLSKRTLKLVRRAAE-HK---CLKRGVKEVVKSIR-------RGHKGLCVIAGNISPIDV--ITHVPILCEESD 93 (156)
Q Consensus 27 ~Pl~~~~l~~ki~~lL~~A~k-ag---~lv~G~~~v~kaI~-------k~kakLVIIA~D~~p~~~--~~~l~~lc~~~n 93 (156)
.|+....-.+.+.+.|..... .| .+-.|++.+.+.+. .+..+.|||-.|-.+.+- .......+++.+
T Consensus 58 ~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~g 137 (200)
T 1v7p_C 58 FNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDN 137 (200)
T ss_dssp ECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTT
T ss_pred EeCCCcCCHHHHHHHHHhhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCC
Confidence 455532333445555554332 23 36677777777532 234678888888765321 223445567889
Q ss_pred CCceeeCC--------------HHHHHhhcCCc
Q 031617 94 IPYIYVAS--------------KEDLANAGATK 112 (156)
Q Consensus 94 IP~i~v~s--------------k~eLG~a~G~~ 112 (156)
|++..++- ..+|-.+.+..
T Consensus 138 i~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~ 170 (200)
T 1v7p_C 138 ILRFGIAVLGYLNRNALDTKNLIKEIKAIASIP 170 (200)
T ss_dssp EEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSS
T ss_pred CEEEEEEecccccccccchhhHHHHHHHHhCCc
Confidence 98765532 46777776653
No 159
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=26.15 E-value=50 Score=25.69 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
+.+.++|+--|++..+-...+.....+.++|++.+.+|.+|-.
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 5566666666665543344455555667888888888777654
No 160
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=26.11 E-value=81 Score=25.61 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHHc---CCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRR---GHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k---~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~ 98 (156)
.++.++|.. ++.++|++..=.+ +.+.++.|..+|+++|++++.
T Consensus 170 ~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 1ax4_A 170 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 222 (467)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEE
Confidence 455556654 3678888853221 234678899999999998865
No 161
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=25.80 E-value=2.6e+02 Score=22.44 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCc-eeeCCHHHHHhhcCCcCceEEEEEecCC
Q 031617 49 KCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPY-IYVASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 49 g~lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~-i~v~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
+.++.-.-|+..+-.-|---+++|++-.++. -...|..+|.+.|..+ +-|.+.+||-+++... +.+++|....
T Consensus 110 KDFiid~yQI~eAr~~GADaILLI~a~L~~~-~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~--a~iIGINNRn 183 (258)
T 4a29_A 110 SDFIVKESQIDDAYNLGADTVLLIVKILTER-ELESLLEYARSYGMEPLILINDENDLDIALRIG--ARFIGIMSRD 183 (258)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEEEGGGSCHH-HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT--CSEEEECSBC
T ss_pred ccccccHHHHHHHHHcCCCeeehHHhhcCHH-HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC--CcEEEEeCCC
Confidence 4467777788888777877777888888875 4778889999999955 7789999999987653 5678886543
No 162
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.47 E-value=96 Score=24.58 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCchhHHhhHHHHhHhcCCCceeeCC--HHHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHh
Q 031617 76 ISPIDVITHVPILCEESDIPYIYVAS--KEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKE 150 (156)
Q Consensus 76 ~~p~~~~~~l~~lc~~~nIP~i~v~s--k~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~ 150 (156)
.+|. -+..|..++++++|+++|+.+ ...+.+.+-...++.++ .+++-.... ..-..|.+.+..-...|.+
T Consensus 212 ps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~-~l~pl~~~~---~~~~~Y~~~m~~n~~~l~~ 283 (286)
T 3gi1_A 212 PSPR-QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVK-TLSPLEAAP---SGNKTYLENLRANLEVLYQ 283 (286)
T ss_dssp CCHH-HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEE-ECCCSCSCC---SSSCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEE-EecccccCC---CCcCCHHHHHHHHHHHHHH
Confidence 3444 477788999999999999863 22333333222333333 344322111 1113566666665555543
No 163
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=25.39 E-value=1.7e+02 Score=20.23 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=34.5
Q ss_pred HHHHHHHcCCcc-EEEEeCCCCchhHHhhHHHHhHhcCC--CceeeC-CHHHHHhhcCCc
Q 031617 57 EVVKSIRRGHKG-LCVIAGNISPIDVITHVPILCEESDI--PYIYVA-SKEDLANAGATK 112 (156)
Q Consensus 57 ~v~kaI~k~kak-LVIIA~D~~p~~~~~~l~~lc~~~nI--P~i~v~-sk~eLG~a~G~~ 112 (156)
+..+.++...+. +|.|+.|- +. .+..+++++++ ++-.+. ...+++++.|..
T Consensus 61 ~~~~~~~~~~v~~vv~Is~d~-~~----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 61 EKAGELKSKGVTEILCISVND-PF----VMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHHTTCCCEEEEESSC-HH----HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEEECCC-HH----HHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 333444445678 99999883 42 34677789998 776654 357888888875
No 164
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=25.37 E-value=2.2e+02 Score=22.67 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCC-ceeeCCHHHHHhhcCCcCceEEEEEecCC
Q 031617 53 RGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIP-YIYVASKEDLANAGATKRPTCCVLVLTKP 124 (156)
Q Consensus 53 ~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP-~i~v~sk~eLG~a~G~~~~~svvaI~d~~ 124 (156)
.=..++..+..-|--.+++++.+.++. -...+...|.+.+.. ++.+.+.+||-++... ++..++|...+
T Consensus 130 ~d~~qi~ea~~~GAD~VlLi~a~L~~~-~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~--ga~iIGinnr~ 199 (272)
T 3tsm_A 130 FDPYQVYEARSWGADCILIIMASVDDD-LAKELEDTAFALGMDALIEVHDEAEMERALKL--SSRLLGVNNRN 199 (272)
T ss_dssp CSTHHHHHHHHTTCSEEEEETTTSCHH-HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS--CCSEEEEECBC
T ss_pred CCHHHHHHHHHcCCCEEEEcccccCHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCEEEECCCC
Confidence 334578888888878888888888774 577888899999985 4668899999988654 35578887544
No 165
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=25.11 E-value=1.1e+02 Score=26.69 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCC---ccccHHHHHHHH--------HcCCccEEEEeCCCCchh------------------------
Q 031617 36 KRTLKLVRRAAEHKC---LKRGVKEVVKSI--------RRGHKGLCVIAGNISPID------------------------ 80 (156)
Q Consensus 36 ~ki~~lL~~A~kag~---lv~G~~~v~kaI--------~k~kakLVIIA~D~~p~~------------------------ 80 (156)
.++.+.++..+-+|+ =--|...+..++ +.+..+++|++.|+.+..
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~ 280 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCB
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCc
Confidence 455566666555555 233455555554 224478999999987530
Q ss_pred ----------HHhhHHHHhHhcCCCceeeCCH------HHHHhhcCCcCceEEEEEecCCCCCCcchHHHHhhHHHHHHH
Q 031617 81 ----------VITHVPILCEESDIPYIYVASK------EDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 144 (156)
Q Consensus 81 ----------~~~~l~~lc~~~nIP~i~v~sk------~eLG~a~G~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~ 144 (156)
.+..|.....++||..||.-++ ++|-..+. -+.++++....+. ..+-..+.|+++
T Consensus 281 Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip----~s~vg~L~~dSsN-----iv~LI~~aY~~i 351 (472)
T 3t3p_B 281 YSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP----GTTVGVLSMDSSN-----VLQLIVDAYGKI 351 (472)
T ss_dssp BTTTTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTST----TCEEEECCTTSTT-----HHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHHhCC----Cceeeeccccchh-----HHHHHHHHHHHh
Confidence 1444556666788988887554 34555543 3578887654432 345557778777
Q ss_pred HHHH
Q 031617 145 VEDV 148 (156)
Q Consensus 145 ~~~i 148 (156)
.+.|
T Consensus 352 ~s~V 355 (472)
T 3t3p_B 352 RSKV 355 (472)
T ss_dssp TTCE
T ss_pred heEE
Confidence 6544
No 166
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=24.76 E-value=84 Score=24.87 Aligned_cols=44 Identities=7% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCccEEEE-eC------CCCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVI-AG------NISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVII-A~------D~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.+.|.+.+.++|++ .. .+-|.+....|..+|+++++.++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 345566666556777754 32 122234567889999999997753
No 167
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=24.74 E-value=1e+02 Score=24.10 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCcc------ccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 35 SKRTLKLVRRAAEHKCLK------RGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 35 ~~ki~~lL~~A~kag~lv------~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
....+..+...++.|++. ++..++.+.+.......++.--..+|......+..+|+++||.++-.
T Consensus 119 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 119 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEe
Confidence 345677777788888753 35667777777666655555444555333356788999999987543
No 168
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=24.64 E-value=1.1e+02 Score=21.92 Aligned_cols=57 Identities=5% Similarity=-0.060 Sum_probs=33.8
Q ss_pred cCCccEEEEeCCCCchhHHhhHHHHhHh-------cCCCceeeC-CHHHHHhhcCCcC----ceEEEEEecCCC
Q 031617 64 RGHKGLCVIAGNISPIDVITHVPILCEE-------SDIPYIYVA-SKEDLANAGATKR----PTCCVLVLTKPT 125 (156)
Q Consensus 64 k~kakLVIIA~D~~p~~~~~~l~~lc~~-------~nIP~i~v~-sk~eLG~a~G~~~----~~svvaI~d~~~ 125 (156)
...+.+|.|..|- +. .+..++++ +++++-.+. ...++.+..|... ..-...|.|+.+
T Consensus 65 ~~~v~vv~Is~d~-~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G 133 (198)
T 1zof_A 65 EKGFNVIGVSIDS-EQ----VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNM 133 (198)
T ss_dssp HTTEEEEEEESSC-HH----HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTT
T ss_pred HcCCEEEEEECCC-HH----HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCC
Confidence 3457788888773 32 33445555 788775554 3568888888751 233455555443
No 169
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=24.41 E-value=1e+02 Score=24.15 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+..+.+.+..+++++||.|.... -.+..+-+..+||++-+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~---~~l~~lr~~~~iPVigi 99 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAA---ATLAALQEALSIPVIGV 99 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHH---HHHHHHHHHCCCCEEec
Confidence 344556667779999999997542 12555667789999864
No 170
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.31 E-value=1.5e+02 Score=19.18 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=37.6
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCch---hHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPI---DVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~---~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
.+....+.++.+......+||+--+.... ++...|.......++|++.+.+...-..
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 94 (140)
T 3grc_A 35 MVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGE 94 (140)
T ss_dssp EECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHH
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHH
Confidence 45567788889999999999997655332 3444443322456899988876554443
No 171
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=24.28 E-value=57 Score=27.64 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHH
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLA 106 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG 106 (156)
+.+...+.. +..+|+--|++.......+.....+.++|++.+.+|.+|-
T Consensus 105 ~~~~~~l~~--aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 105 EKARRVFYR--ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp HHHHHHHTS--CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred HHHHHHHhc--CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 334445544 3333333355544456667777788899998888877653
No 172
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=24.18 E-value=90 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.++|...+.++|++..=-+| .+-++.|..+|+++|+.++.
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 466667776567888887543222 13578889999999997654
No 173
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.04 E-value=1.2e+02 Score=22.55 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHHh-c-C-Cccc--------cH---HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCc
Q 031617 31 GKKLSKRTLKLVRRAAE-H-K-CLKR--------GV---KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPY 96 (156)
Q Consensus 31 ~~~l~~ki~~lL~~A~k-a-g-~lv~--------G~---~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~ 96 (156)
+...-..++.-+..+.+ . | .+.. -. .+.++.+..+++.-+|+..--.+ . ...+...+.+.+||+
T Consensus 20 ~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~-~~~~~~~~~~~~iPv 97 (304)
T 3gbv_A 20 EGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ-Y-TKGFTDALNELGIPY 97 (304)
T ss_dssp TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG-G-THHHHHHHHHHTCCE
T ss_pred CchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH-H-HHHHHHHHHHCCCeE
Confidence 44555666666655444 3 3 2222 11 23355555666666666543322 1 233345566789999
Q ss_pred eeeCC
Q 031617 97 IYVAS 101 (156)
Q Consensus 97 i~v~s 101 (156)
+++.+
T Consensus 98 V~~~~ 102 (304)
T 3gbv_A 98 IYIDS 102 (304)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88763
No 174
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=23.96 E-value=1.3e+02 Score=19.18 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHcCC--ccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 57 EVVKSIRRGH--KGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 57 ~v~kaI~k~k--akLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+.++|++-+ -.|.|++.|-. ....|+.+|++.+-.+...
T Consensus 26 ~~kkal~~l~~G~~l~V~~dd~~---a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 26 MVRKTVRNMQPGETLLIIADDPA---TTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHHTSCTTCEEEEEECCTT---HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEE
Confidence 3455665432 34777877742 3788999999999877554
No 175
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.95 E-value=1.4e+02 Score=22.27 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=38.8
Q ss_pred cCCCCChHHHHHHHHHHHH-HHhcCC-ccc--------cHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCC
Q 031617 26 AKPLAGKKLSKRTLKLVRR-AAEHKC-LKR--------GVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIP 95 (156)
Q Consensus 26 a~Pl~~~~l~~ki~~lL~~-A~kag~-lv~--------G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP 95 (156)
..|-.+......++.-+.. +.+.|. +.. ...+.++.+..+++.-+|+..-..+ . ...+...+.+.+||
T Consensus 14 i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~-~~~~~~~~~~~~iP 91 (293)
T 3l6u_A 14 TIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV-Y-IGSAIEEAKKAGIP 91 (293)
T ss_dssp EESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT-T-THHHHHHHHHTTCC
T ss_pred EEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH-H-HHHHHHHHHHcCCC
Confidence 3444455666666665555 444554 111 1224555555566666665543222 1 22334556678999
Q ss_pred ceeeC
Q 031617 96 YIYVA 100 (156)
Q Consensus 96 ~i~v~ 100 (156)
++++.
T Consensus 92 vV~~~ 96 (293)
T 3l6u_A 92 VFAID 96 (293)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98875
No 176
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=23.86 E-value=1e+02 Score=24.74 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=22.2
Q ss_pred CccEEEEeC------CCCchhHHhhHHHHhHhcCCCce
Q 031617 66 HKGLCVIAG------NISPIDVITHVPILCEESDIPYI 97 (156)
Q Consensus 66 kakLVIIA~------D~~p~~~~~~l~~lc~~~nIP~i 97 (156)
+.++|++.. .+-|.+.+..|..+|++++++++
T Consensus 188 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 225 (428)
T 1iay_A 188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLV 225 (428)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred ceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEE
Confidence 578777753 22233457888899999998765
No 177
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=23.74 E-value=98 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCccEEEEeCC-CC----ch-h----HHhhHHHHhHhcCCCceeeCC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGN-IS----PI-D----VITHVPILCEESDIPYIYVAS 101 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D-~~----p~-~----~~~~l~~lc~~~nIP~i~v~s 101 (156)
.+++++.++..++.+||+|+| .- |. . +...|..+... +|++.+..
T Consensus 50 l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~G 104 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECCC
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEECC
Confidence 344555566667899999999 53 21 1 23334444433 89877753
No 178
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=23.69 E-value=1.2e+02 Score=26.38 Aligned_cols=41 Identities=17% Similarity=-0.000 Sum_probs=25.6
Q ss_pred HHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCH
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASK 102 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk 102 (156)
..++.|.+-.+.+||++.++++. ..| ++.++||..+...++
T Consensus 264 ~~le~I~~~g~~vvi~~~~I~~~--al~---~L~~~~I~av~~~~~ 304 (513)
T 3iyg_B 264 EKVERILKHGINCFINRQLIYNY--PEQ---LFGAAGVMAIEHADF 304 (513)
T ss_pred HHHHHHHhcCCCEEEEcCCccHH--HHH---HHHHcCceEEecCCH
Confidence 45556666668899999999874 222 234566655554433
No 179
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=23.67 E-value=1e+02 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHH---cCCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIR---RGHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~---k~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.+.|+ ..+..+||+-..-+ +.++.+.|..+|++++++++.
T Consensus 187 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 240 (439)
T 3dxv_A 187 LTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240 (439)
T ss_dssp HHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 345555553 44566777655432 234588899999999997754
No 180
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=23.62 E-value=76 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHcCCc--cEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 57 EVVKSIRRGHK--GLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 57 ~v~kaI~k~ka--kLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
.+.++|++-+. .|.|++.|-.+ ...|+.+|++.|-.+...
T Consensus 43 ktkkaL~~l~~Ge~L~Vl~dd~~a---~~dIp~~~~~~G~~v~~~ 84 (97)
T 1je3_A 43 ATLEAMPQLKKGEILEVVSDCPQS---INNIPLDARNHGYTVLDI 84 (97)
T ss_dssp HHHHHTTTCCSSCEEEEEEBCSSS---SCHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHcCCCCCEEEEEECCcch---HHHHHHHHHHCCCEEEEE
Confidence 34555655332 38888888533 578999999999777553
No 181
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=23.60 E-value=1.6e+02 Score=20.80 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=34.5
Q ss_pred HHcCCccEEEEeCCCCchhHHhhHHHHhHhc-------CCCceeeC-CHHHHHhhcCCcC----ceEEEEEecCCC
Q 031617 62 IRRGHKGLCVIAGNISPIDVITHVPILCEES-------DIPYIYVA-SKEDLANAGATKR----PTCCVLVLTKPT 125 (156)
Q Consensus 62 I~k~kakLVIIA~D~~p~~~~~~l~~lc~~~-------nIP~i~v~-sk~eLG~a~G~~~----~~svvaI~d~~~ 125 (156)
+....+.+|.|..|. +. .+..+++++ ++++-++. ...++.++.|... ..-...|.|+.+
T Consensus 61 ~~~~~v~vv~Is~d~-~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G 131 (192)
T 2h01_A 61 FKERNVELLGCSVDS-KF----THLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQG 131 (192)
T ss_dssp HHHTTEEEEEEESSC-HH----HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTS
T ss_pred HHHCCCEEEEEEeCC-HH----HHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCC
Confidence 333457788888873 32 234455555 67765554 3568889888750 123456666443
No 182
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=23.56 E-value=92 Score=25.50 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCccEEEEeCCCC-ch---------hHHhhHHHHhHhcCCCceeeC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNIS-PI---------DVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~-p~---------~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.+.+.+...++.+||+|+|+- .. .+...+..+... +|++.+.
T Consensus 33 ~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~ 85 (379)
T 3tho_B 33 DKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLP 85 (379)
T ss_dssp HHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECC
T ss_pred HHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEc
Confidence 4455555667789999999987 21 123444445433 8988875
No 183
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=23.42 E-value=70 Score=25.57 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHcC--CccEEEEeCCCCchhHHhhHHHHhHhcCCCce
Q 031617 55 VKEVVKSIRRG--HKGLCVIAGNISPIDVITHVPILCEESDIPYI 97 (156)
Q Consensus 55 ~~~v~kaI~k~--kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i 97 (156)
..++.++|... +.++|++..-.....-.+.|..+|+++|++++
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li 153 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLI 153 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEE
Confidence 45556666553 57788776522222346788899999998654
No 184
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.39 E-value=1.6e+02 Score=20.58 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhhcCCcCceEEEEEec
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 122 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G~~~~~svvaI~d 122 (156)
.........|..+.|+=+.|-+ + ...|...+++.++|+..+.+. |+.=--+-..+|+||..
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~e~--e-l~~l~~~a~~~gl~~~~i~DA---G~Tei~~gt~TvlaigP 105 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVESEE--E-LFKLKAEAEKLGLPNALIRDA---GLTEIPPGTVTVLAVGP 105 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESSHH--H-HHHHHHHHHHTTCCEEEEECT---TCTTSCTTCEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEecCCHH--H-HHHHHHHHHHCCCCEEEEEcC---CccccCCCCEEEEEecc
Confidence 4455556778888888887742 2 556777888999998777544 33100122478999953
No 185
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=23.38 E-value=2.2e+02 Score=21.25 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=33.7
Q ss_pred CCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCceeeCCHHHHHhh
Q 031617 65 GHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIYVASKEDLANA 108 (156)
Q Consensus 65 ~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a 108 (156)
-+-.+++|=.|.+ |..+...+..+|-.+++++++..+..+-++.
T Consensus 79 ~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~ 129 (219)
T 2bgw_A 79 YETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALV 129 (219)
T ss_dssp CSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHH
T ss_pred cCCcEEEEEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHH
Confidence 3455666666653 6678888999999999999999998876654
No 186
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=23.27 E-value=71 Score=24.59 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHHHc-----CCccEEEEeCCC-------CchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRR-----GHKGLCVIAGNI-------SPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k-----~kakLVIIA~D~-------~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.++|.. .+.++|++..=. -|.+-+..|..+|+++|++++.
T Consensus 116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~ 171 (347)
T 1jg8_A 116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 171 (347)
T ss_dssp HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEe
Confidence 4455566654 257888884222 2223467888999999998754
No 187
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.21 E-value=1.7e+02 Score=19.51 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCch---hHHhhHHHHhHhcCCCceeeC
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPI---DVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~---~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+....+.+..+.+....+||+--+.... ++...|.......++|++.+.
T Consensus 36 ~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 36 HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEE
Confidence 34466788888888899999998665432 334443322223688998774
No 188
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=23.13 E-value=1.1e+02 Score=23.36 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCC--ccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGH--KGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~k--akLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+.++.+++++. ..++.+-+|-... ....+|+++|||+..+.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~----~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADA----FGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTC----HHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCch----HHHHHHHHcCCcEEEeC
Confidence 556677777774 4555555553211 23678999999998754
No 189
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.93 E-value=1.5e+02 Score=18.76 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=33.0
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhH---hcCCCceeeCC
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCE---ESDIPYIYVAS 101 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~---~~nIP~i~v~s 101 (156)
.+....+.+..+.+....+||+--+....+-...+..+-+ ..++|++.+.+
T Consensus 32 ~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 32 YVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 4456778888898899999999876644333333333333 46778877643
No 190
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=22.87 E-value=76 Score=25.21 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+..+.+.+..+++++||.|..+. + .+..+-+..+||++-+.
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~-~--~l~~lr~~~~iPVigi~ 115 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATA-V--ALEYLQKTLSISVIGVI 115 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHH-H--HHHHHHHHCSSEEEESH
T ss_pred HHHHHHHHHCCCCEEEEeCCchhH-H--HHHHHHHhCCCCEEecc
Confidence 344566667779999999998652 1 24555577899998743
No 191
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=22.85 E-value=1.2e+02 Score=21.90 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=31.9
Q ss_pred cHHHHHHHHHcC--CccEEEEeCCCC-----------c-------hhHHhhHHHHhHhcCCCceeeC
Q 031617 54 GVKEVVKSIRRG--HKGLCVIAGNIS-----------P-------IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 54 G~~~v~kaI~k~--kakLVIIA~D~~-----------p-------~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
.+++.++.++.. .++++++..-.. . ..+-..+..+|+++++|++-+.
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~ 181 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLY 181 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecc
Confidence 556666677665 577777654211 0 3467788999999999998664
No 192
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=22.53 E-value=1.1e+02 Score=21.29 Aligned_cols=46 Identities=9% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCccEEEEeCC------CCc--------hhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGN------ISP--------IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D------~~p--------~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+++.++.+++..++++++.-- ..+ ..+-..+..+|++++++++-+.
T Consensus 103 ~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~ 162 (204)
T 3p94_A 103 LVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYH 162 (204)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchh
Confidence 344455566566777777421 000 2345568899999999887543
No 193
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.49 E-value=1.1e+02 Score=24.24 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++++.|++.+++.||.-...++. +.+ .++++.|+|++.+.
T Consensus 217 l~~l~~~ik~~~v~~if~e~~~~~~-~~~---~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 217 LKEIQDFVKEYNVKTIFAEDNVNPK-IAH---AIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCTH-HHH---HHHHTTTCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChH-HHH---HHHHHhCCeEEEec
Confidence 4577888889999999999998885 444 45899999987653
No 194
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.43 E-value=1.1e+02 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHc-CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 58 VVKSIRR-GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 58 v~kaI~k-~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+...+.+ +++.-+|+..+.. ....+...+.+.+||++.+.
T Consensus 53 i~~~i~~~~~vDgiIi~~~~~---~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 53 ARELFQGRDKPDYLMLVNEQY---VAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHSSSCCSEEEEECCSS---HHHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHhcCCCCCEEEEeCchh---hHHHHHHHHHhCCCcEEEEc
Confidence 3444443 5677777766432 23445567778999998874
No 195
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.37 E-value=92 Score=20.95 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=32.4
Q ss_pred cHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS 101 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s 101 (156)
+..++...+ ..+.++|++.+... ....+...|..+++|++.+..
T Consensus 41 ~~~~~~~~~--~~~D~Ii~t~~l~~--~~~~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 41 AETRLSEVV--DRFDVVLLAPQSRF--NKKRLEEITKPKGIPIEIINT 84 (109)
T ss_dssp CSTTHHHHT--TTCSEEEECSCCSS--HHHHHHHHHHHHTCCEEECCH
T ss_pred cHHHHHhhc--CCCCEEEECCccHH--HHHHHHHHhcccCCCEEEECh
Confidence 444444433 56899999999965 377888888889999877663
No 196
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=22.36 E-value=80 Score=24.33 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=28.0
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhh
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 108 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a 108 (156)
..+.++|+--|++..+-...+.....+.++|++.+.+|.+|-..
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 56677777666654322233444455678999999888877543
No 197
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=22.30 E-value=45 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.0
Q ss_pred hHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 80 DVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 80 ~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
.+-..|...++++|||++.-. .|.+++-
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 54 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDV---KLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECH---HHHHHHH
Confidence 367889999999999997665 6666554
No 198
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=22.25 E-value=81 Score=25.50 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=26.9
Q ss_pred HHHHHHHHc--CCccEEEEeC------CC-CchhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRR--GHKGLCVIAG------NI-SPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k--~kakLVIIA~------D~-~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..+.+.|.+ ++..+||+-. .+ .+.++.+.|..+|+++++.++.
T Consensus 191 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 242 (434)
T 2epj_A 191 EALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344455543 3566666632 21 1346788899999999997754
No 199
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.18 E-value=99 Score=24.38 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.++.+.|++.+++.||.-...++. +.+. ++++.|+|++.+.
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~-~~~~---ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 215 LTEIQEFVKTYKVKTIFTESNASSK-VAET---LVKSTGVGLKTLN 256 (284)
T ss_dssp HHHHHHHHHHTTCCCEEECSSSCCH-HHHH---HHSSSSCCEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcH-HHHH---HHHHcCCeEEEec
Confidence 3577888899999999999998885 4444 4789999987664
No 200
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=22.08 E-value=85 Score=22.57 Aligned_cols=45 Identities=20% Similarity=0.458 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCccEEEEeCCCC------c-----hhHHhhHHHHhHhcCCCceeeC
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNIS------P-----IDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~------p-----~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
+.+.++.++.. ++++++.---. + ..+-..+..+|++++++|+-+.
T Consensus 119 l~~li~~l~~~-~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~ 174 (218)
T 1vjg_A 119 TREILTQAKKL-YPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVF 174 (218)
T ss_dssp HHHHHHHHHHH-SCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCT
T ss_pred HHHHHHHHHHh-CcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehH
Confidence 34444555555 77777754211 1 1356678889999999998765
No 201
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=21.95 E-value=1.8e+02 Score=19.37 Aligned_cols=55 Identities=7% Similarity=-0.063 Sum_probs=34.9
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCC----HHHHHhhcCCcCceEEEEEecCCC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVAS----KEDLANAGATKRPTCCVLVLTKPT 125 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~s----k~eLG~a~G~~~~~svvaI~d~~~ 125 (156)
.+.++.|..|-++. .+..+.+++++++..+.+ ..+|.+..|... .-.+.+.|+.+
T Consensus 62 ~~~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-~P~~~lid~~G 120 (152)
T 2lrn_A 62 GFTIYGVSTDRREE----DWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVG-FPHIILVDPEG 120 (152)
T ss_dssp TEEEEEEECCSCHH----HHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCS-SCEEEEECTTS
T ss_pred CeEEEEEEccCCHH----HHHHHHHHhCCCCeEEecccchhHHHHHHhCCCc-CCeEEEECCCC
Confidence 46677777775443 345566788888866654 578888888753 33455665443
No 202
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=21.88 E-value=1.4e+02 Score=25.98 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=15.3
Q ss_pred HHHHHHHcCCccEEEEeCCCCch
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPI 79 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~ 79 (156)
..++.|.+-.+.+||++.++++.
T Consensus 267 ~~v~kI~~~g~nvvi~~~~I~d~ 289 (529)
T 3iyg_A 267 ERIQKILATGANVILTTGGIDDM 289 (529)
T ss_pred HHHHHHHhcCCCEEEECCCCCHH
Confidence 33444555557788888888774
No 203
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=21.83 E-value=60 Score=25.22 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=47.8
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCC-CceeeCCH--HHHHhhcCCcCc--------eEEEEEecCCCCCCcchHHH
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDI-PYIYVASK--EDLANAGATKRP--------TCCVLVLTKPTKGELGQEEQ 134 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nI-P~i~v~sk--~eLG~a~G~~~~--------~svvaI~d~~~~~~~~~~~~ 134 (156)
.+.+|.|+.|. |. ....+++++++ ++..+.+. .+++++.|.... .-.+.|+|+.+.-.. ....
T Consensus 82 gv~VvgIS~Ds-~~----~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~-~~~~ 155 (224)
T 3keb_A 82 HLKLIVITVDS-PS----SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHY-SERL 155 (224)
T ss_dssp TSEEEEEESSC-HH----HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEE-EEEC
T ss_pred CCEEEEEECCC-HH----HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEE-EEec
Confidence 37888888884 42 23577889999 47666653 789998887531 224566664432110 0000
Q ss_pred HhhH--HHHHHHHHHHHhhhcc
Q 031617 135 DKLK--ADYTLVVEDVKELASS 154 (156)
Q Consensus 135 ~~~~--~~y~e~~~~i~~~~~~ 154 (156)
..+. -.|+++.+.|+++.++
T Consensus 156 ~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 156 ANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp SBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhhc
Confidence 1111 1267777777777654
No 204
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=21.78 E-value=94 Score=25.09 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCcc------ccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 36 KRTLKLVRRAAEHKCLK------RGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 36 ~ki~~lL~~A~kag~lv------~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
...++.+...++.|++. .+..++.+.+.......+++--..++..-...+..+|+++||.++-.
T Consensus 157 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 226 (335)
T 3h7u_A 157 PSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAY 226 (335)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHHHCCCEEEEe
Confidence 56778888888888753 45667777777666665665555555333356889999999987543
No 205
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=21.75 E-value=94 Score=25.07 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCcc------ccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceee
Q 031617 36 KRTLKLVRRAAEHKCLK------RGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 36 ~ki~~lL~~A~kag~lv------~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
...+..+...++.|++. .+..++.+.+.......+++--..+|..-...+..+|+++||.++-.
T Consensus 153 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 222 (331)
T 3h7r_A 153 TSTWKAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQQGLHELCKSKGVHLSGY 222 (331)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCHHHHHHHHHhcCCCceeEEeecccccCCHHHHHHHHHCCCEEEEe
Confidence 56778888888888753 45677777777776665665555555333356889999999987543
No 206
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=21.71 E-value=64 Score=26.50 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCCch-hHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPI-DVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~-~~~~~l~~lc~~~nIP~i~ 98 (156)
.++.+.+...+.++|++..-..|. ...+.|..+|+++++.++.
T Consensus 175 ~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~ 218 (447)
T 3h7f_A 175 DAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLV 218 (447)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 455566655557788884333332 2467889999999986654
No 207
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.68 E-value=1.6e+02 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=22.9
Q ss_pred hhHHHHhHhcCCCceeeC---C---HHHHHhhcCC-cCceEEEEE
Q 031617 83 THVPILCEESDIPYIYVA---S---KEDLANAGAT-KRPTCCVLV 120 (156)
Q Consensus 83 ~~l~~lc~~~nIP~i~v~---s---k~eLG~a~G~-~~~~svvaI 120 (156)
.....+-++++|||..+. + +.+|-...|. .+.+-++.|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 456667788999986652 2 4566666663 123445555
No 208
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=21.60 E-value=88 Score=24.90 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=20.7
Q ss_pred CCccEEEEeC---CC----CchhHHhhHHHHhHhcCCCcee
Q 031617 65 GHKGLCVIAG---NI----SPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 65 ~kakLVIIA~---D~----~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
.+.++|++-. +. .+.+....|..+|++++++++.
T Consensus 198 ~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~ 238 (426)
T 1sff_A 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238 (426)
T ss_dssp GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456666632 11 1334577888888888886653
No 209
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=21.55 E-value=67 Score=25.01 Aligned_cols=43 Identities=7% Similarity=0.058 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhc--CCCce
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEES--DIPYI 97 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~--nIP~i 97 (156)
..++.++|...+.++|++..=-+| .+-+..|..+|+++ |+.++
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li 196 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVV 196 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEE
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEE
Confidence 355566666546778887522222 23467778888888 77654
No 210
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=21.42 E-value=86 Score=24.15 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=29.5
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHhh
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 108 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a 108 (156)
..+.++|+--|++..+-...+.....+.++|++.+.+|.++-..
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 55677777667665443444556666778899888887776554
No 211
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=21.41 E-value=1e+02 Score=25.13 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHH---cCCccEEEEeCC------CC-chhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIR---RGHKGLCVIAGN------IS-PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~---k~kakLVIIA~D------~~-p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.+.|. ..+..+||+-.. +- +.++.+.|..+|+++++.++.
T Consensus 201 ~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~ 254 (452)
T 3n5m_A 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLIS 254 (452)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEE
Confidence 556666665 345666777654 11 445788899999999997764
No 212
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=21.39 E-value=70 Score=24.83 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=12.2
Q ss_pred CccEEEEeCCCCch
Q 031617 66 HKGLCVIAGNISPI 79 (156)
Q Consensus 66 kakLVIIA~D~~p~ 79 (156)
.-+++|+..|+.+.
T Consensus 104 a~rllvl~TDa~~H 117 (212)
T 2iue_A 104 GTRFLVLVTDNDFH 117 (212)
T ss_dssp SEEEEEEECSSCBC
T ss_pred ccEEEEEECcCCcc
Confidence 68999999999873
No 213
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=21.36 E-value=1.3e+02 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
...++.|.+-.+.+||++.|+++. ..| ++.++||-.+.--++.+|-+
T Consensus 228 ~~~le~I~~~g~~lvi~~~~I~~~--al~---~L~~~~I~av~~~~k~~le~ 274 (500)
T 3aq1_B 228 REMAEKVIASGANVVFCQKGIDDM--AQY---YIEKAGIYAVRRVKKSDLKR 274 (500)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCHH--HHH---HHHHTTCEEECSCCHHHHHH
T ss_pred HHHHHHHHHhCcCEEEECCCcCHH--HHH---HHHHCCEEEEEeCCHHHHHH
Confidence 456667777778899999999874 222 23456776655445554443
No 214
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=21.18 E-value=1.3e+02 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.++|..+ .++|++..=-+| .+-+..|..+|++++++++.
T Consensus 140 ~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 140 LHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp HHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45566666654 566666533222 23477788889999997653
No 215
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.17 E-value=1.6e+02 Score=18.34 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHcCCccEEEEeCCCC-chhHHhhHHHHhH---hcCCCceee
Q 031617 35 SKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNIS-PIDVITHVPILCE---ESDIPYIYV 99 (156)
Q Consensus 35 ~~ki~~lL~~A~kag~lv~G~~~v~kaI~k~kakLVIIA~D~~-p~~~~~~l~~lc~---~~nIP~i~v 99 (156)
.+.+...|...--.=..+....+..+.+.+....+||+--+.. ..+-...+..+.+ ..++|++.+
T Consensus 18 ~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 18 SATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 3445555544211111445667888888888899999976654 2222333333333 368999887
No 216
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=21.17 E-value=1.7e+02 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=15.9
Q ss_pred HHHHHHHHcCCccEEEEeCCCC
Q 031617 56 KEVVKSIRRGHKGLCVIAGNIS 77 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~ 77 (156)
++++..+...++.+||+|+|.-
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~ 51 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLF 51 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSB
T ss_pred HHHHHHHHhcCCCEEEECCCcC
Confidence 3444555667889999999974
No 217
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=21.14 E-value=69 Score=20.23 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHHcCCc--cEEEEeCCCCchhHHhhHHHHhHhcCCCcee
Q 031617 57 EVVKSIRRGHK--GLCVIAGNISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 57 ~v~kaI~k~ka--kLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
.+.++|++-+. .|.|++.|-. -...|+.+|++.|-.+..
T Consensus 22 ~~k~al~~l~~G~~L~V~~dd~~---a~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 22 ELIKAYKQAKVGEVISVYSTDAG---TKKDAPAWIQKSGQELVG 62 (78)
T ss_dssp HHHHHHTTSCTTCCEECCBSSSC---HHHHHHHHHHHHTEEECC
T ss_pred HHHHHHHcCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEE
Confidence 34556655332 3777777742 378899999999866544
No 218
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=21.08 E-value=76 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCccEEEEeCCCC------chhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNIS------PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~------p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..+.+.|.. +.++|++..=.+ |.+....|..+|+++|++++.
T Consensus 151 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 151 DELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 444444533 577887743222 223578899999999996653
No 219
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=21.06 E-value=66 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 65 GHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 65 ~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
.+..+||.+.|. . .....|-.+|.+++||++...+..--|.
T Consensus 124 ~~~dvVv~~~d~-~-~~r~~ln~~~~~~~ip~i~~~~~G~~G~ 164 (346)
T 1y8q_A 124 TQFDAVCLTCCS-R-DVIVKVDQICHKNSIKFFTGDVFGYHGY 164 (346)
T ss_dssp TTCSEEEEESCC-H-HHHHHHHHHHHHTTCEEEEEEEEBTEEE
T ss_pred cCCCEEEEcCCC-H-HHHHHHHHHHHHcCCCEEEEeecccEEE
Confidence 357899999885 4 3577899999999999998765444444
No 220
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=21.04 E-value=39 Score=23.57 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=25.4
Q ss_pred CccEEEEeCCCC------chhHHhhHHHHhHh-----cCCCceeeCCHHHHH
Q 031617 66 HKGLCVIAGNIS------PIDVITHVPILCEE-----SDIPYIYVASKEDLA 106 (156)
Q Consensus 66 kakLVIIA~D~~------p~~~~~~l~~lc~~-----~nIP~i~v~sk~eLG 106 (156)
.+..+|+--|++ ..+....+..+..+ .++|++.+.+|.+|-
T Consensus 97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 456666666765 22334445444444 689999998877653
No 221
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=20.91 E-value=2e+02 Score=20.53 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHcCCccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 51 LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 51 lv~G~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...+..++++.++.... .|+||+-=++ .....+..+++++++|+..+.
T Consensus 25 ~~~~~~~al~~l~~~G~-~iii~TgR~~-~~~~~~~~~l~~~gi~~~~I~ 72 (142)
T 2obb_A 25 EIPFAVETLKLLQQEKH-RLILWSVREG-ELLDEAIEWCRARGLEFYAAN 72 (142)
T ss_dssp BCTTHHHHHHHHHHTTC-EEEECCSCCH-HHHHHHHHHHHTTTCCCSEES
T ss_pred cCHHHHHHHHHHHHCCC-EEEEEeCCCc-ccHHHHHHHHHHcCCCeEEEE
Confidence 34577788888765534 5555555444 356667888999999985554
No 222
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=20.90 E-value=1e+02 Score=24.86 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHHc--CCccEEEEeCCCC-------chhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRR--GHKGLCVIAGNIS-------PIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k--~kakLVIIA~D~~-------p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..+.+.|.+ .+..+||+-..-. +.++.+.|..+|+++++.++.
T Consensus 190 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~ 241 (434)
T 3l44_A 190 ETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241 (434)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455556654 3455555543211 334688899999999997764
No 223
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=20.85 E-value=80 Score=25.12 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCccEEEEeCC------CCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRRGHKGLCVIAGN------ISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D------~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.+.|...+.++|++..- +.|...++.|..+|++++++++.
T Consensus 124 ~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~ 173 (379)
T 3ke3_A 124 IETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVI 173 (379)
T ss_dssp HHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEE
Confidence 466777775545666665421 22334578899999999997754
No 224
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.72 E-value=1.5e+02 Score=19.42 Aligned_cols=43 Identities=7% Similarity=0.039 Sum_probs=24.8
Q ss_pred CCCCchhHHhhHHHHhHhcCCCceeeC---C---HHHHHhhcCCcCceEEEEE
Q 031617 74 GNISPIDVITHVPILCEESDIPYIYVA---S---KEDLANAGATKRPTCCVLV 120 (156)
Q Consensus 74 ~D~~p~~~~~~l~~lc~~~nIP~i~v~---s---k~eLG~a~G~~~~~svvaI 120 (156)
..|.. =.....+-++++|+|..+. + +.+|....|.. .+-++.|
T Consensus 28 ~~Cp~---C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~-~vP~ifi 76 (109)
T 1wik_A 28 AKCGF---SKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP-TYPQLYV 76 (109)
T ss_dssp CCSST---HHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC-SSCEEEC
T ss_pred CCCch---HHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC-CCCEEEE
Confidence 46632 3444556678899996653 2 34677667753 2334544
No 225
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=20.71 E-value=50 Score=22.14 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=25.6
Q ss_pred ccEEEEeCCCCc--hhHHhhHHHHhHhcCCCceeeCCHHHHHh
Q 031617 67 KGLCVIAGNISP--IDVITHVPILCEESDIPYIYVASKEDLAN 107 (156)
Q Consensus 67 akLVIIA~D~~p--~~~~~~l~~lc~~~nIP~i~v~sk~eLG~ 107 (156)
+..+|+.-|++. ......+..+..+.++|++.+.+|.+|-.
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 444444444432 22344566677778999999998877643
No 226
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=20.63 E-value=99 Score=21.35 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=21.2
Q ss_pred cHHHHHHHHHcCCccEEEEeCCCC-----chhHHhhHHHHhHhcCCCceee
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGNIS-----PIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D~~-----p~~~~~~l~~lc~~~nIP~i~v 99 (156)
|.++.++.+++|++..||+.. .+ ..+....+...+.++||.++++
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~-ldRl~R~~~~~~~~~~~~l~~~gv~l~~~ 108 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYK-LDRLSRSVRDTLYLVKDVFTKNKIDFISL 108 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESS-HHHHCSCHHHHHHHHHHTTGGGTCEEEET
T ss_pred HHHHHHHHHHhCCCCEEEEEe-CCcccccHHHHHHHHHHHHHHCCCEEEEe
Confidence 455555556666555444432 21 1111223444556666655554
No 227
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=20.58 E-value=49 Score=29.37 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=23.7
Q ss_pred ccEEEEeCCC-------Cch--hHHhhHHHHhHhcCCCceee
Q 031617 67 KGLCVIAGNI-------SPI--DVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 67 akLVIIA~D~-------~p~--~~~~~l~~lc~~~nIP~i~v 99 (156)
--+.|||.|- .|. .-..++..+|.+.|||++++
T Consensus 338 ~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~l 379 (531)
T 3n6r_B 338 RTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTL 379 (531)
T ss_dssp EEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEecccccCCCCCHHHHHHHHHHHHHhhccCCCEEEE
Confidence 3467888882 221 24556889999999999885
No 228
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=20.54 E-value=1.3e+02 Score=23.80 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=26.6
Q ss_pred HHHHHHHHHc--CCccEEEEeC------CCCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRR--GHKGLCVIAG------NISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k--~kakLVIIA~------D~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
..++.+.+++ ....++++.+ -+-+.+-...|..+|+++|+.++.
T Consensus 170 ~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 170 LAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4566667763 3345555422 222334577789999999986653
No 229
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.41 E-value=1.5e+02 Score=21.27 Aligned_cols=90 Identities=11% Similarity=0.174 Sum_probs=47.1
Q ss_pred cHHHHHHHHHcCCccEEEEeCC-CCc----------------------hhHHhhHHHHhHhcCCCceeeCCHHHHHhhcC
Q 031617 54 GVKEVVKSIRRGHKGLCVIAGN-ISP----------------------IDVITHVPILCEESDIPYIYVASKEDLANAGA 110 (156)
Q Consensus 54 G~~~v~kaI~k~kakLVIIA~D-~~p----------------------~~~~~~l~~lc~~~nIP~i~v~sk~eLG~a~G 110 (156)
.+.+.++.+++..++++++.-= +.+ ..+-..+..+|++++++++-+.+ .+....+
T Consensus 101 ~l~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vD~~~--~~~~~~~ 178 (240)
T 3mil_A 101 NIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNK--AFQQEGG 178 (240)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEECHHH--HHHHHHG
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCeEEehHH--HHhhcCC
Confidence 4555666676666777777631 000 13455677899999999876532 2322222
Q ss_pred CcCceEEEEEecCCCCCCcchHHHHhhHHHHHHHHHHHHhhhcc
Q 031617 111 TKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELASS 154 (156)
Q Consensus 111 ~~~~~svvaI~d~~~~~~~~~~~~~~~~~~y~e~~~~i~~~~~~ 154 (156)
....- ...| ..|.. ..-|+-..+.+.+.|++..|.
T Consensus 179 ~~~~~---~~~D----g~Hpn--~~G~~~~a~~l~~~l~~~~p~ 213 (240)
T 3mil_A 179 DAWQQ---LLTD----GLHFS--GKGYKIFHDELLKVIETFYPQ 213 (240)
T ss_dssp GGGGG---GBSS----SSSBC--HHHHHHHHHHHHHHHHHHCGG
T ss_pred ccHhh---ccCC----CCCcC--HHHHHHHHHHHHHHHHHhccc
Confidence 11000 0112 11222 234555567777777776554
No 230
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=20.38 E-value=76 Score=24.50 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCccEEEEeCCCCc------hhHHhhHHHHhHhcCCCcee
Q 031617 56 KEVVKSIRRGHKGLCVIAGNISP------IDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 56 ~~v~kaI~k~kakLVIIA~D~~p------~~~~~~l~~lc~~~nIP~i~ 98 (156)
.++.+++.. .++|++..=.+| .+-+..|..+|+++|++++.
T Consensus 136 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 136 EDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp HHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 455555554 778887543332 23477888999999997654
No 231
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=20.38 E-value=1.6e+02 Score=25.40 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHcCCccEEEEeCCCCch
Q 031617 57 EVVKSIRRGHKGLCVIAGNISPI 79 (156)
Q Consensus 57 ~v~kaI~k~kakLVIIA~D~~p~ 79 (156)
..++.|.+-.+.+||++.|+++.
T Consensus 265 ~~lekI~~~g~~vvi~~~~I~~~ 287 (515)
T 3iyg_E 265 EMIRQIKETGANLAVCQWGFDDE 287 (515)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHH
Confidence 34455555567899999999874
No 232
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.33 E-value=1.6e+02 Score=21.88 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHH-HHhcCC-ccc--------cHHHHHHHHHcCCccEEEEeC-CCCchhHHhhHHHHhHhcCCCceee
Q 031617 31 GKKLSKRTLKLVRR-AAEHKC-LKR--------GVKEVVKSIRRGHKGLCVIAG-NISPIDVITHVPILCEESDIPYIYV 99 (156)
Q Consensus 31 ~~~l~~ki~~lL~~-A~kag~-lv~--------G~~~v~kaI~k~kakLVIIA~-D~~p~~~~~~l~~lc~~~nIP~i~v 99 (156)
....-..+++-+.. +.+.|. +.. ...+..+.+..+++.-+|+.. +.+. .....+.+.+||++++
T Consensus 24 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~-----~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 24 QNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND-----RIIQYLHEQNFPFVLI 98 (292)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC-----HHHHHHHHTTCCEEEE
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHHCCCCEEEE
Confidence 34444555554444 445553 211 124456666667776666654 3322 2344556789999887
Q ss_pred C
Q 031617 100 A 100 (156)
Q Consensus 100 ~ 100 (156)
.
T Consensus 99 ~ 99 (292)
T 3k4h_A 99 G 99 (292)
T ss_dssp S
T ss_pred C
Confidence 5
No 233
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=20.25 E-value=95 Score=25.48 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=27.0
Q ss_pred CccEEEEeCCCCchhHHhhHHHHhHhcCCCceeeC
Q 031617 66 HKGLCVIAGNISPIDVITHVPILCEESDIPYIYVA 100 (156)
Q Consensus 66 kakLVIIA~D~~p~~~~~~l~~lc~~~nIP~i~v~ 100 (156)
...+||.+.|-.+ .....+-..|.++++|++...
T Consensus 208 ~~DlVvd~~Dn~~-~~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 208 EADIWVVSADHPF-NLINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCSEEEECCCCST-THHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEecCChH-HHHHHHHHHHHHhCCCEEEEE
Confidence 4678999988644 256678899999999999875
No 234
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=20.23 E-value=1e+02 Score=24.99 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=25.9
Q ss_pred HHHHHHHHHc---CCccEEEEeCC-------CCchhHHhhHHHHhHhcCCCcee
Q 031617 55 VKEVVKSIRR---GHKGLCVIAGN-------ISPIDVITHVPILCEESDIPYIY 98 (156)
Q Consensus 55 ~~~v~kaI~k---~kakLVIIA~D-------~~p~~~~~~l~~lc~~~nIP~i~ 98 (156)
...+.+.|.+ .+..+|++-.. +.|.++.+.|..+|+++++.++.
T Consensus 205 ~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~ 258 (449)
T 3a8u_X 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258 (449)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEE
Confidence 3444455543 34556655332 12345688888899999886654
No 235
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=20.08 E-value=1.6e+02 Score=25.05 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCc
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISP 78 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p 78 (156)
..+++..+.+.++.+||+++|.-.
T Consensus 41 l~~lv~~~~~~~~D~VliaGDLfd 64 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDIFH 64 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCBS
T ss_pred HHHHHHHHHhcCCCEEEEcCcccc
Confidence 345666666788999999999853
No 236
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=20.01 E-value=1.3e+02 Score=24.21 Aligned_cols=42 Identities=10% Similarity=0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCccEEEEeCCCCchhHHhhHHH--HhHhcCCCce
Q 031617 55 VKEVVKSIRRGHKGLCVIAGNISPIDVITHVPI--LCEESDIPYI 97 (156)
Q Consensus 55 ~~~v~kaI~k~kakLVIIA~D~~p~~~~~~l~~--lc~~~nIP~i 97 (156)
+.++.+.|++.+++.||.-...++. +.+.|.. .|++.|+|+.
T Consensus 235 l~~l~~~ik~~~v~~If~e~~~~~~-~~~~la~~~~A~e~gv~v~ 278 (313)
T 1toa_A 235 MQELAAFIAQRKLPAIFIESSIPHK-NVEALRDAVQARGHVVQIG 278 (313)
T ss_dssp HHHHHHHHHHTTCSEEEEETTSCTH-HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChH-HHHHHHccchhhhcCCcee
Confidence 4567778888999999999999885 6776653 3589999874
Done!