BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031620
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
Length = 513
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 83 TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 132
T E+ L +N+ RL +LW KR +I +GFL V W ++
Sbjct: 207 TDEILHLVPNIDNF---RLTLRAIKLWAKRHNIYSNILGFLGGVSWAXLV 253
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
3'- Datp And Magnesium Chloride
Length = 514
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 83 TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 132
T E+ L +N+ RL +LW KR +I +GFL V W ++
Sbjct: 207 TDEILHLVPNIDNF---RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
Length = 514
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 83 TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 132
T E+ L +N+ RL +LW KR +I +GFL V W ++
Sbjct: 207 TDEILHLVPNIDNF---RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
>pdb|3P3V|A Chain A, Crystal Structure Of A Pts Dependent
N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
From Streptococcus Pyogenes At 1.65 A Resolution
pdb|3P3V|B Chain B, Crystal Structure Of A Pts Dependent
N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
From Streptococcus Pyogenes At 1.65 A Resolution
Length = 163
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 98 DDRLLYAQGQLWLK 111
D+RL++ QGQLW+K
Sbjct: 13 DERLIHGQGQLWVK 26
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 12 KSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
++++I L +G LG IV+ A K L CI+ ++S +L+G P
Sbjct: 319 ENIKISDPLEEGCRLGPIVSEAQYK-KVLNCISSAKSEGATILTGGRRP 366
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 6 ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65
E + K L + TQG+ G++ T + L+ + +E+ + E + G
Sbjct: 112 EGTQVAKGLPFAGIFTQGLDFGLVDTRH--PYTGLVPQSRTEALLA-------EHAREAG 162
Query: 66 REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQG 106
EIP H V ++ RQD VEV G + R Y G
Sbjct: 163 AEIPRGHEVTRL--RQDAEAVEVTVAGPSGPYPVRARYGVG 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,515,031
Number of Sequences: 62578
Number of extensions: 181147
Number of successful extensions: 298
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 11
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)