Query 031620
Match_columns 156
No_of_seqs 175 out of 740
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3342 Signal peptidase I [In 100.0 1.9E-43 4.1E-48 272.1 10.8 155 1-156 1-180 (180)
2 TIGR02228 sigpep_I_arch signal 99.9 7.9E-26 1.7E-30 175.8 13.2 114 28-151 11-150 (158)
3 TIGR02227 sigpep_I_bact signal 99.4 8.5E-13 1.8E-17 102.4 6.5 91 23-124 2-161 (163)
4 cd06530 S26_SPase_I The S26 Ty 99.1 2.1E-10 4.5E-15 79.1 5.1 54 50-119 2-85 (85)
5 KOG0171 Mitochondrial inner me 99.0 1.7E-09 3.6E-14 84.9 6.4 71 50-124 35-157 (176)
6 PRK10861 signal peptidase I; P 98.9 7.2E-09 1.6E-13 89.0 8.0 32 87-122 268-300 (324)
7 TIGR02754 sod_Ni_protease nick 98.7 3E-08 6.6E-13 69.2 5.3 59 52-120 2-89 (90)
8 COG0681 LepB Signal peptidase 98.3 2.1E-07 4.6E-12 70.6 0.6 42 19-65 7-48 (166)
9 cd06462 Peptidase_S24_S26 The 98.0 2.2E-05 4.7E-10 52.8 5.5 45 50-99 2-69 (84)
10 KOG1568 Mitochondrial inner me 97.8 4.5E-05 9.7E-10 60.1 5.6 70 51-124 34-150 (174)
11 PRK13838 conjugal transfer pil 97.6 0.00027 5.9E-09 55.9 7.7 33 84-120 137-169 (176)
12 PF00717 Peptidase_S24: Peptid 97.5 0.00014 3E-09 47.8 4.3 36 53-94 2-60 (70)
13 TIGR02771 TraF_Ti conjugative 97.4 0.00092 2E-08 52.6 7.7 29 88-120 137-166 (171)
14 PRK13884 conjugal transfer pep 97.3 0.0018 3.8E-08 51.3 8.3 33 84-120 140-173 (178)
15 COG2932 Predicted transcriptio 96.8 0.0062 1.3E-07 48.8 7.3 62 50-122 125-209 (214)
16 cd06529 S24_LexA-like Peptidas 96.7 0.0076 1.6E-07 40.2 6.3 44 51-100 3-67 (81)
17 PF10502 Peptidase_S26: Signal 94.7 0.04 8.7E-07 41.7 3.6 35 84-122 101-136 (138)
18 PRK00215 LexA repressor; Valid 92.7 0.61 1.3E-05 36.8 7.3 16 50-65 120-136 (205)
19 PRK12423 LexA repressor; Provi 90.3 1.6 3.4E-05 34.8 7.4 16 50-65 116-132 (202)
20 PRK10276 DNA polymerase V subu 89.9 2 4.4E-05 32.1 7.3 16 50-65 53-69 (139)
21 TIGR00498 lexA SOS regulatory 87.9 3 6.5E-05 32.7 7.3 16 50-65 113-129 (199)
22 PF07234 DUF1426: Protein of u 53.9 29 0.00062 25.5 4.3 35 11-45 3-37 (117)
23 PRK04183 glutamyl-tRNA(Gln) am 53.8 19 0.00041 32.3 4.1 22 42-65 174-195 (419)
24 PF07423 DUF1510: Protein of u 52.8 21 0.00046 29.3 3.9 29 18-46 10-38 (217)
25 COG0252 AnsB L-asparaginase/ar 52.6 14 0.0003 32.4 3.0 25 39-65 119-143 (351)
26 PRK11096 ansB L-asparaginase I 51.7 13 0.00029 32.4 2.7 21 43-65 123-143 (347)
27 KOG3605 Beta amyloid precursor 51.2 15 0.00032 35.2 3.0 12 50-61 661-674 (829)
28 TIGR00519 asnASE_I L-asparagin 49.8 15 0.00032 31.8 2.7 20 44-65 101-120 (336)
29 KOG0503 Asparaginase [Amino ac 49.2 29 0.00063 30.8 4.4 59 39-100 140-212 (368)
30 smart00870 Asparaginase Aspara 46.0 18 0.00039 31.0 2.6 17 47-65 105-121 (323)
31 PRK09461 ansA cytoplasmic aspa 42.1 21 0.00047 30.7 2.5 19 45-65 107-125 (335)
32 COG4959 TraF Type IV secretory 42.1 17 0.00037 28.8 1.7 33 84-120 133-166 (173)
33 cd00411 Asparaginase Asparagin 41.8 24 0.00051 30.3 2.7 17 47-65 105-121 (323)
34 PF00710 Asparaginase: Asparag 37.1 21 0.00045 30.4 1.6 17 47-65 100-116 (313)
35 TIGR02153 gatD_arch glutamyl-t 35.2 53 0.0011 29.3 3.9 17 47-65 167-183 (404)
36 TIGR00520 asnASE_II L-asparagi 35.0 35 0.00076 29.8 2.7 21 43-65 128-148 (349)
37 COG1974 LexA SOS-response tran 33.4 1.7E+02 0.0037 23.6 6.3 68 48-123 112-197 (201)
38 PF12273 RCR: Chitin synthesis 32.1 30 0.00064 25.6 1.6 18 22-39 2-19 (130)
39 TIGR01000 bacteriocin_acc bact 32.0 35 0.00075 30.4 2.2 72 15-94 15-86 (457)
40 TIGR03794 NHPM_micro_HlyD NHPM 27.0 1.6E+02 0.0034 25.7 5.5 9 86-94 77-85 (421)
41 PF10399 UCR_Fe-S_N: Ubiquitin 25.7 1.6E+02 0.0035 17.8 4.8 28 14-41 9-36 (41)
42 PF10138 vWA-TerF-like: vWA fo 20.8 57 0.0012 26.5 1.4 15 51-65 7-21 (200)
No 1
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-43 Score=272.06 Aligned_cols=155 Identities=59% Similarity=0.956 Sum_probs=147.6
Q ss_pred CcchHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCcccccccC---------------
Q 031620 1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG--------------- 65 (156)
Q Consensus 1 ~~~~~~~~~~~~~~~~r~i~~~~l~i~~~l~~~~li~~~l~~~~g~~~p~~vV~SgSMeP~i~~G--------------- 65 (156)
|-+..|.+..+++|++|+.+.|+++++.++..|+++|+.+.+++|+++|++||+||||||.|++|
T Consensus 1 ~~~~~~~~~~~k~mn~Rq~l~Q~ln~~mivssA~MiwK~l~vvt~seSPiVVVLSgSMePaF~RGDlLfL~N~~~~p~~v 80 (180)
T KOG3342|consen 1 MLVSLEMFDDLKRMNIRQLLYQVLNFAMIVSSAYMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNRNEDPIRV 80 (180)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeCCCCCEEEEEcCCcCcccccccEEEEecCCCCccee
Confidence 45678889999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------CCccEEEEEEEeeeccCCCceEEEEecCCCCCCCchhhccCceeeeeceeeeEEEEEecccceeeeeccc
Q 031620 66 ----------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTE 135 (156)
Q Consensus 66 ----------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~~y~~~~~~V~~~~I~Gkv~~~iP~lG~i~~~l~~ 135 (156)
++.||+|||+.+++.. +++..|.||||||..+|..+|++++.|+++++|+|+++.++||+|++++|+++
T Consensus 81 GdivVf~vegR~IPiVHRviK~he~~-~~~~~~LTKGDNN~~dD~~Ly~~gq~~L~r~~Ivg~~~G~~Py~G~itI~mnd 159 (180)
T KOG3342|consen 81 GDIVVFKVEGREIPIVHRVIKQHEKS-NGHIKFLTKGDNNAVDDRGLYAQGQNWLERKDIVGRVRGYLPYVGMITIWMND 159 (180)
T ss_pred ccEEEEEECCccCchhHHHHHHhccc-CCcEEEEecCCCCcccchhcccccccceeccceeeEEeeccccceEEEEEecC
Confidence 4689999999999864 47888999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhHhcCC
Q 031620 136 KPIIKYILIGALGLLVITSKD 156 (156)
Q Consensus 136 ~~~~~~~~~~i~~~~~l~~~~ 156 (156)
.|.+||+++|.+|+++++++|
T Consensus 160 ~p~~KyalL~~lGl~vL~~rE 180 (180)
T KOG3342|consen 160 YPKLKYALLGGLGLSVLLHRE 180 (180)
T ss_pred CcchHHHHHHHHHHheeeccC
Confidence 999999999999999999887
No 2
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=99.94 E-value=7.9e-26 Score=175.85 Aligned_cols=114 Identities=32% Similarity=0.550 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEeCCCcccccccC-----------------------CC--ccEEEEEEEeeeccC
Q 031620 28 MIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG-----------------------RE--IPIVHRVIKVHERQD 82 (156)
Q Consensus 28 ~~l~~~~li~~~l~~~~g~~~p~~vV~SgSMeP~i~~G-----------------------~~--~~i~HRVi~v~~~~~ 82 (156)
+++++.++++..+...++++.|.++|.|+||||++++| ++ ..++|||++++++
T Consensus 11 ~~~~l~~~~~~~l~~~~~~~~p~v~V~g~SM~Ptl~~GD~vlv~~~~~~~~~~GDIVvf~~~~~~~~iihRVi~v~~~-- 88 (158)
T TIGR02228 11 LIILLVILLLYGLVSKASGPDPVVVVLSGSMEPTFNTGDLILVTGADPNDIQVGDVITYKSPGFNTPVTHRVIEINNS-- 88 (158)
T ss_pred HHHHHHHHHHHHheeeccCCCcEEEEcCCCCcCCccCCCEEEEEecccCCCCCCCEEEEEECCCCccEEEEEEEEECC--
Confidence 33333444444555556677788889999999999999 12 6899999999876
Q ss_pred CCceEEEEecCCCCCCCchhhccCceeeeeceeeeEEE-EEecccceeeeecccchhHHHHHHHHHHHHh
Q 031620 83 TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAV-GFLPYVGWVTIIMTEKPIIKYILIGALGLLV 151 (156)
Q Consensus 83 ~g~~~~~TkGDnN~~~D~~~y~~~~~~V~~~~I~Gkv~-~~iP~lG~i~~~l~~~~~~~~~~~~i~~~~~ 151 (156)
+++.+|+||||||+.+|+.+ +++++|+||+. +++||+|++..++++..+ ..+++++.++++
T Consensus 89 ~g~~~~~tkGDnN~~~D~~~-------v~~~~IiG~v~~~~iP~~G~~~~~~~~~~~-~~~~~~~p~~~~ 150 (158)
T TIGR02228 89 GGELGFITKGDNNPAPDGEP-------VPSENVIGKYLGFTIPFAGYVLVFAPQAIG-AAALLIIPGIGL 150 (158)
T ss_pred CCcEEEEEEecCCCCCCccc-------CCHHHEEEEEEEeccCcccEEEEEeecCch-hhhhHHhHHHHH
Confidence 35678999999999999753 88999999999 789999999999999776 444444444433
No 3
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=99.38 E-value=8.5e-13 Score=102.42 Aligned_cols=91 Identities=26% Similarity=0.323 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCcccccccC----------------------------CCccEEEEE
Q 031620 23 GVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG----------------------------REIPIVHRV 74 (156)
Q Consensus 23 ~l~i~~~l~~~~li~~~l~~~~g~~~p~~vV~SgSMeP~i~~G----------------------------~~~~i~HRV 74 (156)
++.+++++++++++..++. ..+.|.|+||+||++.| .+..++|||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~-------~~~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRV 74 (163)
T TIGR02227 2 ILSLLIAILLALLIRTFVF-------FPYKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRV 74 (163)
T ss_pred HHHHHHHHHHHHHHHhhEE-------EEEEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEE
Confidence 3444555555555544433 23899999999999999 135789999
Q ss_pred EEeeecc----C-----------------------------------CCceEEEEecCC-CCCCCchhhccCceeeeece
Q 031620 75 IKVHERQ----D-----------------------------------TGEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQH 114 (156)
Q Consensus 75 i~v~~~~----~-----------------------------------~g~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~ 114 (156)
++.+++. + .++++|+..||| +++.|+|.| ++|++++
T Consensus 75 ig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~----G~V~~~~ 150 (163)
T TIGR02227 75 IGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYF----GFVPIDD 150 (163)
T ss_pred EecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCc----CcCCHHH
Confidence 9887651 0 135679999999 789999864 5799999
Q ss_pred eeeEEEEE-ec
Q 031620 115 IMGRAVGF-LP 124 (156)
Q Consensus 115 I~Gkv~~~-iP 124 (156)
|+||+.+. +|
T Consensus 151 I~Gk~~~~~~p 161 (163)
T TIGR02227 151 IIGKVSFVFYP 161 (163)
T ss_pred eEEEEEEEECC
Confidence 99999984 66
No 4
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=99.07 E-value=2.1e-10 Score=79.12 Aligned_cols=54 Identities=41% Similarity=0.559 Sum_probs=41.5
Q ss_pred eEEEeCCCcccccccC--------------------------C--CccEEEEEEEeeeccCCCceEEEEecCC--CCCCC
Q 031620 50 VVVVLSGSMEPGFKRG--------------------------R--EIPIVHRVIKVHERQDTGEVEVLTKGDN--NYGDD 99 (156)
Q Consensus 50 ~~vV~SgSMeP~i~~G--------------------------~--~~~i~HRVi~v~~~~~~g~~~~~TkGDn--N~~~D 99 (156)
++.|.++||+|++..| . +..++||+++ |+||||| |..+|
T Consensus 2 ~~~v~g~SM~P~i~~gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~-----------~~~~gDn~~ns~d~ 70 (85)
T cd06530 2 PVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG-----------YFVLGDNRNNSLDS 70 (85)
T ss_pred eeEEcCCCCcCcccCCCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE-----------EEEeeCCCCCCCcc
Confidence 4789999999999999 1 2566777765 8899999 66666
Q ss_pred chhhccCceeeeeceeeeEE
Q 031620 100 RLLYAQGQLWLKRQHIMGRA 119 (156)
Q Consensus 100 ~~~y~~~~~~V~~~~I~Gkv 119 (156)
+.. ++++.++|+|++
T Consensus 71 ~~~-----g~~~~~~i~G~~ 85 (85)
T cd06530 71 RYW-----GPVPEDDIVGKV 85 (85)
T ss_pred CCc-----CCCcHHHeEEeC
Confidence 543 247889999985
No 5
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.7e-09 Score=84.92 Aligned_cols=71 Identities=31% Similarity=0.363 Sum_probs=58.2
Q ss_pred eEEEeCCCcccccccC-----------------------------CCccEEEEEEEeeecc----------C--------
Q 031620 50 VVVVLSGSMEPGFKRG-----------------------------REIPIVHRVIKVHERQ----------D-------- 82 (156)
Q Consensus 50 ~~vV~SgSMeP~i~~G-----------------------------~~~~i~HRVi~v~~~~----------~-------- 82 (156)
.....|.||+||++.+ .++.+++||++.++|- |
T Consensus 35 ~~~~~gpSM~PTl~~~gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~cKRIva~eGD~v~v~~~~~~~n~~~e~~~~ 114 (176)
T KOG0171|consen 35 FVMCSGPSMEPTLHDGGDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHICKRIVAMEGDLVEVHDGPLVVNDLVEKFST 114 (176)
T ss_pred eeeccCCCcCceecCCCcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhhhheeeccCCceEEEecCCcccchhhhhccc
Confidence 3677788999988887 2356899999998871 1
Q ss_pred ---CCceEEEEecCC-CCCCCchhhccCceeeeeceeeeEEEE-Eec
Q 031620 83 ---TGEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG-FLP 124 (156)
Q Consensus 83 ---~g~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~~-~iP 124 (156)
.++++.+..||| |++.|++.| ++++...|.||+++ .||
T Consensus 115 ~i~VP~GhVfv~GDN~~nS~DSr~y----GplP~glI~gRvv~r~Wp 157 (176)
T KOG0171|consen 115 PIRVPEGHVFVEGDNRNNSLDSRNY----GPLPMGLIQGRVVFRIWP 157 (176)
T ss_pred eeeccCceEEEecCCCCCccccccc----CCCchhheeeeEEEEecC
Confidence 267789999999 999999976 47999999999998 488
No 6
>PRK10861 signal peptidase I; Provisional
Probab=98.87 E-value=7.2e-09 Score=89.05 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=26.2
Q ss_pred EEEEecCC-CCCCCchhhccCceeeeeceeeeEEEEE
Q 031620 87 EVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 87 ~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~~~ 122 (156)
+|+..||| .++.|++.| ++|+.++|+||+...
T Consensus 268 ~yf~mgdnr~~S~DSRy~----G~Vp~~~i~G~a~~i 300 (324)
T PRK10861 268 QYFMMGDNRDNSADSRYW----GFVPEANLVGKATAI 300 (324)
T ss_pred eEEEeCCCCCCCcccCcc----cccCHHHcEEEEEEE
Confidence 48888999 678899854 579999999999763
No 7
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=98.70 E-value=3e-08 Score=69.21 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=46.4
Q ss_pred EEeCCCcccccccC--------------------------C--CccEEEEEEEeeeccCCCceEEEEecCCC-CCCCchh
Q 031620 52 VVLSGSMEPGFKRG--------------------------R--EIPIVHRVIKVHERQDTGEVEVLTKGDNN-YGDDRLL 102 (156)
Q Consensus 52 vV~SgSMeP~i~~G--------------------------~--~~~i~HRVi~v~~~~~~g~~~~~TkGDnN-~~~D~~~ 102 (156)
.|.+.||+|+|..| . +..++||+++..++ .++.+|||+ .+.|++.
T Consensus 2 ~V~g~SM~P~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~~------~~~l~~dN~~~~~d~~~ 75 (90)
T TIGR02754 2 KVTGVSMSPTLPPGDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDDN------GLFLLGDNPKASTDSRQ 75 (90)
T ss_pred EeeCCCccCccCCCCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcCC------eEEEeCCCCCCCCcccc
Confidence 47899999999998 1 46789999888643 578899994 4677764
Q ss_pred hccCceeeeeceeeeEEE
Q 031620 103 YAQGQLWLKRQHIMGRAV 120 (156)
Q Consensus 103 y~~~~~~V~~~~I~Gkv~ 120 (156)
+ ++++.++|+|+|+
T Consensus 76 ~----g~v~~~~I~G~v~ 89 (90)
T TIGR02754 76 L----GPVPRSLLLGKVL 89 (90)
T ss_pred c----CCCcHHHEEEEEE
Confidence 3 3688999999986
No 8
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]
Probab=98.27 E-value=2.1e-07 Score=70.59 Aligned_cols=42 Identities=40% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCcccccccC
Q 031620 19 VLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 19 i~~~~l~i~~~l~~~~li~~~l~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
..+++..++.++++++++. +.+...+.++|.|+||+||++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~V~s~SM~Ptl~~G 48 (166)
T COG0681 7 FLELISSLLIAIILALIIG-----VRTFVFEPVVVPSGSMEPTLNVG 48 (166)
T ss_pred HHHHHHHHHHHHHHhheee-----eEEEEEEEEEECCCccccccccC
Confidence 3455555555555555442 23334467999999999999999
No 9
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr
Probab=97.96 E-value=2.2e-05 Score=52.78 Aligned_cols=45 Identities=33% Similarity=0.352 Sum_probs=35.1
Q ss_pred eEEEeCCCcccccccC----------------------CC-ccEEEEEEEeeeccCCCceEEEEecCCCCCCC
Q 031620 50 VVVVLSGSMEPGFKRG----------------------RE-IPIVHRVIKVHERQDTGEVEVLTKGDNNYGDD 99 (156)
Q Consensus 50 ~~vV~SgSMeP~i~~G----------------------~~-~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D 99 (156)
.+.|.++||+|+|+.| ++ ..++||+....+ +..+.+++||.+.+|
T Consensus 2 ~~~v~g~SM~P~i~~gd~v~i~~~~~~~~~G~iv~~~~~~~~~~ikrl~~~~~-----~~~~~l~~~N~~~~~ 69 (84)
T cd06462 2 ALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPGGELTVKRVIGLPG-----EGHYFLLGDNPNSPD 69 (84)
T ss_pred eeEEcCCCccCcccCCCEEEEEecCCCCcCCEEEEEEcCCCcEEEEEEEEECC-----CCEEEEECCCCCCCc
Confidence 3689999999999999 34 789999998754 136999999944333
No 10
>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=4.5e-05 Score=60.09 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=58.0
Q ss_pred EEEeCCCcccccccC----------------------------------CCccEEEEEEEeeecc-----------CCCc
Q 031620 51 VVVLSGSMEPGFKRG----------------------------------REIPIVHRVIKVHERQ-----------DTGE 85 (156)
Q Consensus 51 ~vV~SgSMeP~i~~G----------------------------------~~~~i~HRVi~v~~~~-----------~~g~ 85 (156)
..|.+.||+|+++++ .+..+++||.+++++. ..++
T Consensus 34 a~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpk 113 (174)
T KOG1568|consen 34 AQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPK 113 (174)
T ss_pred eEEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCChhheeeeeeecccccEeccCCCCCCceecCC
Confidence 578899999999999 2578999999998862 1367
Q ss_pred eEEEEecCC-CCCCCchhhccCceeeeeceeeeEEEE-Eec
Q 031620 86 VEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVG-FLP 124 (156)
Q Consensus 86 ~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~~-~iP 124 (156)
+++-.-||| -.+.|++. .+||+-..|.|+|.. .+|
T Consensus 114 ghcWVegDn~~hs~DSnt----FGPVS~gli~grai~ilwp 150 (174)
T KOG1568|consen 114 GHCWVEGDNQKHSYDSNT----FGPVSTGLIVGRAIYILWP 150 (174)
T ss_pred CcEEEecCCcccccccCc----cCCcchhheeeeEEEEEcC
Confidence 788899999 67789875 468999999999998 477
No 11
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=97.62 E-value=0.00027 Score=55.93 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=28.9
Q ss_pred CceEEEEecCCCCCCCchhhccCceeeeeceeeeEEE
Q 031620 84 GEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAV 120 (156)
Q Consensus 84 g~~~~~TkGDnN~~~D~~~y~~~~~~V~~~~I~Gkv~ 120 (156)
++++|+..|||+++.|++.| ++|+.++|+|++.
T Consensus 137 p~g~~fvlgd~~~S~DSRy~----G~V~~~~I~G~a~ 169 (176)
T PRK13838 137 PPGHLFLHSSFAGSYDSRYF----GPVPASGLLGLAR 169 (176)
T ss_pred CCCeEEEECCCCCCCccccc----CcccHHHeEEEEE
Confidence 56779999999999999864 5799999999986
No 12
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=97.54 E-value=0.00014 Score=47.77 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=28.0
Q ss_pred EeCCCcccccccC---------------------CCc--cEEEEEEEeeeccCCCceEEEEecCC
Q 031620 53 VLSGSMEPGFKRG---------------------REI--PIVHRVIKVHERQDTGEVEVLTKGDN 94 (156)
Q Consensus 53 V~SgSMeP~i~~G---------------------~~~--~i~HRVi~v~~~~~~g~~~~~TkGDn 94 (156)
|.+.||+|+|+.| .+. ..+||++...+ ..+..+.||
T Consensus 2 V~GdSM~P~i~~Gd~v~v~~~~~~~~gdivv~~~~~~~~~~iKrv~~~~~------~~~~~~~~n 60 (70)
T PF00717_consen 2 VEGDSMEPTIKDGDIVLVDPSSEPKDGDIVVVKIDGDEELYIKRVVGEPG------GIILISSNN 60 (70)
T ss_dssp EESSTTGGTSSTTEEEEEEETS---TTSEEEEEETTEESEEEEEEEEETT------EEEEE-SST
T ss_pred eECcCcccCeeCCCEEEEEEcCCCccCeEEEEEECCceeeEEEEEEEeCC------CEEEEeccC
Confidence 7899999999999 234 89999997654 367788766
No 13
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=97.37 E-value=0.00092 Score=52.62 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEEecCC-CCCCCchhhccCceeeeeceeeeEEE
Q 031620 88 VLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAV 120 (156)
Q Consensus 88 ~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~ 120 (156)
|+..||| +++.|+|.| ++|+.++|+||+.
T Consensus 137 yf~lgdn~~~S~DSRy~----G~V~~~~IiGk~~ 166 (171)
T TIGR02771 137 FFVVHDTSPTSFDSRYF----GPISREQVIGRVK 166 (171)
T ss_pred EEEECCCCCCCCccccc----ceecHHHeEEEEE
Confidence 8888998 668999854 5799999999987
No 14
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=97.27 E-value=0.0018 Score=51.31 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=27.8
Q ss_pred CceEEEEecCC-CCCCCchhhccCceeeeeceeeeEEE
Q 031620 84 GEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAV 120 (156)
Q Consensus 84 g~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~ 120 (156)
++.+|+..||| +++.|++.| ++|+.++|+|++.
T Consensus 140 p~g~~fvlgd~~~~S~DSRYf----G~V~~~~I~G~~~ 173 (178)
T PRK13884 140 GESELLLMSDVSATSFDGRYF----GPINRSQIKTVIR 173 (178)
T ss_pred CCCEEEEECCCCCCCCccccc----CcccHHHEEEEEE
Confidence 45689999998 678999854 5799999999986
No 15
>COG2932 Predicted transcriptional regulator [Transcription]
Probab=96.76 E-value=0.0062 Score=48.79 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=38.8
Q ss_pred eEEEeCCCcccccccC----------------------CCccEEEEEEEeeeccCCCceEEEEecCCCCC-CCchhhccC
Q 031620 50 VVVVLSGSMEPGFKRG----------------------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYG-DDRLLYAQG 106 (156)
Q Consensus 50 ~~vV~SgSMeP~i~~G----------------------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~-~D~~~y~~~ 106 (156)
.+.|.++||||+|+.| ++...++|+...++. .+...=+|-.. +|...+. .
T Consensus 125 ~i~V~GDSMeP~~~~Gd~ilVd~~~~~~~gd~v~v~~~g~~~~VK~l~~~~~~------~~~l~S~N~~~~~~~~~~~-~ 197 (214)
T COG2932 125 ALRVTGDSMEPTYEDGDTLLVDPGVNTRRGDRVYVETDGGELYVKKLQREPGG------LLRLVSLNPDYYPDEIFSE-D 197 (214)
T ss_pred EEEEeCCcccccccCCCEEEECCCCceeeCCEEEEEEeCCeEEEEEEEEecCC------eEEEEeCCCCCCcccccCc-c
Confidence 4689999999999999 235677777776543 45466666444 3322211 0
Q ss_pred ceeeeeceeeeEEEEE
Q 031620 107 QLWLKRQHIMGRAVGF 122 (156)
Q Consensus 107 ~~~V~~~~I~Gkv~~~ 122 (156)
+ . =+++|+|+..
T Consensus 198 ~-~---v~iIgrVv~~ 209 (214)
T COG2932 198 D-D---VEIIGRVVWV 209 (214)
T ss_pred c-e---EEEEEEEEEE
Confidence 0 0 3588998864
No 16
>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the
Probab=96.71 E-value=0.0076 Score=40.22 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=33.1
Q ss_pred EEEeCCCcccccccC---------------------CCccEEEEEEEeeeccCCCceEEEEecCCCCCCCc
Q 031620 51 VVVLSGSMEPGFKRG---------------------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR 100 (156)
Q Consensus 51 ~vV~SgSMeP~i~~G---------------------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~ 100 (156)
+.|.+.||+|.|+.| ++...++|+....+ ..+..+.||...++.
T Consensus 3 ~~v~g~sM~p~i~~gd~lii~~~~~~~~g~i~~~~~~~~~~ikr~~~~~~------~~~~L~s~N~~~~~~ 67 (81)
T cd06529 3 LRVKGDSMEPTIPDGDLVLVDPSDTPRDGDIVVARLDGELTVKRLQRRGG------GRLRLISDNPAYPPI 67 (81)
T ss_pred EEEECCCcCCccCCCCEEEEcCCCCCCCCCEEEEEECCEEEEEEEEECCC------CcEEEEeCCCCCCCE
Confidence 678899999999999 34667788776543 368889998755543
No 17
>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.
Probab=94.67 E-value=0.04 Score=41.72 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=24.8
Q ss_pred CceEEEEecCC-CCCCCchhhccCceeeeeceeeeEEEEE
Q 031620 84 GEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 84 g~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~~~ 122 (156)
++++|+..||| .++-|++.| ++|+.++|+||+.-.
T Consensus 101 p~g~~~v~gd~~~~S~DSRy~----G~V~~~~I~g~~~pl 136 (138)
T PF10502_consen 101 PEGEYFVLGDNRPNSFDSRYF----GPVPRSQIIGKARPL 136 (138)
T ss_dssp -TTEEEEE-SBTTS--SHHHH------EEGGGEEEEEEEE
T ss_pred CCCEEEEecCCCCCccccCEe----cccCHHHEEEEEEEE
Confidence 56789999988 667899865 579999999999753
No 18
>PRK00215 LexA repressor; Validated
Probab=92.71 E-value=0.61 Score=36.80 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.4
Q ss_pred eEEEeCCCcc-cccccC
Q 031620 50 VVVVLSGSME-PGFKRG 65 (156)
Q Consensus 50 ~~vV~SgSMe-P~i~~G 65 (156)
.+.|.++||+ |+|+.|
T Consensus 120 ~~~V~GdSM~~~~i~~G 136 (205)
T PRK00215 120 LLRVRGDSMIDAGILDG 136 (205)
T ss_pred EEEEccCCCCCCCcCCC
Confidence 3578899995 799999
No 19
>PRK12423 LexA repressor; Provisional
Probab=90.33 E-value=1.6 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.0
Q ss_pred eEEEeCCCcc-cccccC
Q 031620 50 VVVVLSGSME-PGFKRG 65 (156)
Q Consensus 50 ~~vV~SgSMe-P~i~~G 65 (156)
.+-|.++||+ |+|+.|
T Consensus 116 ~l~V~GdSM~~~~i~~G 132 (202)
T PRK12423 116 LLQVQGDSMIDDGILDG 132 (202)
T ss_pred EEEEecCcCCCCCcCCC
Confidence 4689999997 799999
No 20
>PRK10276 DNA polymerase V subunit UmuD; Provisional
Probab=89.86 E-value=2 Score=32.13 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.7
Q ss_pred eEEEeCCCcc-cccccC
Q 031620 50 VVVVLSGSME-PGFKRG 65 (156)
Q Consensus 50 ~~vV~SgSMe-P~i~~G 65 (156)
.+.|.+.||+ |+|+.|
T Consensus 53 ~l~V~GdSM~~~~I~~G 69 (139)
T PRK10276 53 FVKASGDSMIDAGISDG 69 (139)
T ss_pred EEEEecCCCCCCCCCCC
Confidence 4689999998 589999
No 21
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=87.88 E-value=3 Score=32.69 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.4
Q ss_pred eEEEeCCCcc-cccccC
Q 031620 50 VVVVLSGSME-PGFKRG 65 (156)
Q Consensus 50 ~~vV~SgSMe-P~i~~G 65 (156)
.+.|.+.||+ |.|+.|
T Consensus 113 ~~~V~GdSM~~~~i~~G 129 (199)
T TIGR00498 113 LLKVMGDSMVDAGICDG 129 (199)
T ss_pred EEEecCCCCCCCCCCCC
Confidence 4689999996 679999
No 22
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=53.85 E-value=29 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=27.6
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 031620 11 IKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITG 45 (156)
Q Consensus 11 ~~~~~~r~i~~~~l~i~~~l~~~~li~~~l~~~~g 45 (156)
+..++.+..++|.+.+..++....+++..+.+++-
T Consensus 3 LTtERVKlfFEwFLF~~AIFiAItIlYILLalL~E 37 (117)
T PF07234_consen 3 LTTERVKLFFEWFLFFGAIFIAITILYILLALLFE 37 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999888888888888876654
No 23
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=53.85 E-value=19 Score=32.31 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.1
Q ss_pred HhhCCCCCeEEEeCCCcccccccC
Q 031620 42 CITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 42 ~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.++...| ||++|||.|.=..+
T Consensus 174 ~~l~~~kP--VVlTGAqrp~~~~~ 195 (419)
T PRK04183 174 FMLKTPVP--IVFVGAQRSSDRPS 195 (419)
T ss_pred HhcCCCCC--EEEeCCCCCCCCCC
Confidence 33466666 89999999987777
No 24
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=52.82 E-value=21 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 031620 18 QVLTQGVSLGMIVTSALIIWKALMCITGS 46 (156)
Q Consensus 18 ~i~~~~l~i~~~l~~~~li~~~l~~~~g~ 46 (156)
+=...+|++++++++++++..+..++++.
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhheecC
Confidence 33468899998888888887777766654
No 25
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=52.63 E-value=14 Score=32.42 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=19.1
Q ss_pred HHHHhhCCCCCeEEEeCCCcccccccC
Q 031620 39 ALMCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 39 ~l~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
++.+.+.++.| +|++|||.|.=.++
T Consensus 119 ~L~l~l~~~kP--VVlTGamr~s~~~~ 143 (351)
T COG0252 119 FLSLTLNTPKP--VVLTGAMRPADAPS 143 (351)
T ss_pred HHHHHhcCCCC--EEEeCCCCCCCCcC
Confidence 33444555666 88999999999998
No 26
>PRK11096 ansB L-asparaginase II; Provisional
Probab=51.70 E-value=13 Score=32.38 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=16.6
Q ss_pred hhCCCCCeEEEeCCCcccccccC
Q 031620 43 ITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 43 ~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
..+...| ||+||||.|.-..+
T Consensus 123 ~~~~~kP--VVlTGAmrP~~~~~ 143 (347)
T PRK11096 123 TVKCDKP--VVLVGAMRPSTAMS 143 (347)
T ss_pred hccCCCC--EEEeCCCCCCCCcC
Confidence 3466555 89999999998877
No 27
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=51.15 E-value=15 Score=35.22 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=10.3
Q ss_pred eEEEeCC--Ccccc
Q 031620 50 VVVVLSG--SMEPG 61 (156)
Q Consensus 50 ~~vV~Sg--SMeP~ 61 (156)
+++|.|| ||-||
T Consensus 661 VViVESGWGSmLPT 674 (829)
T KOG3605|consen 661 VVIVESGWGSILPT 674 (829)
T ss_pred EEEEecCccccchH
Confidence 4788997 99998
No 28
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=49.81 E-value=15 Score=31.76 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.4
Q ss_pred hCCCCCeEEEeCCCcccccccC
Q 031620 44 TGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 44 ~g~~~p~~vV~SgSMeP~i~~G 65 (156)
+....| ||+||||.|.=..+
T Consensus 101 l~~~kP--VVlTGsmrp~~~~~ 120 (336)
T TIGR00519 101 LETPKP--VVFTGAQRSSDRPS 120 (336)
T ss_pred cCCCCC--EEEECCCCCCCCcC
Confidence 333555 89999999998777
No 29
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=49.20 E-value=29 Score=30.76 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHhhCCCCCeEEEeCCCcccccccCCC-ccEEEEEEEeeecc-------------CCCceEEEEecCCCCCCCc
Q 031620 39 ALMCITGSESPVVVVLSGSMEPGFKRGRE-IPIVHRVIKVHERQ-------------DTGEVEVLTKGDNNYGDDR 100 (156)
Q Consensus 39 ~l~~~~g~~~p~~vV~SgSMeP~i~~G~~-~~i~HRVi~v~~~~-------------~~g~~~~~TkGDnN~~~D~ 100 (156)
++.+.+++..| +|.+|||.|..+...| ..-.-|.+-+-+.+ .-+.+.+.||=++| +-|.
T Consensus 140 fls~~~~t~KP--IVitGa~~P~~~v~aDG~~Nl~~Av~iAgs~k~~~~gv~v~~n~ki~~g~~ttK~n~n-~lDa 212 (368)
T KOG0503|consen 140 FLSFTINTLKP--IVITGAMRPATEVSADGPMNLYRAVLIAGSDKSVGRGVLVPLNDKIPSGFRTTKTNVN-SLDA 212 (368)
T ss_pred HHHHHHhcCCc--EEEeccccceeeeccCCchhhhceEEEeecCcccccceeeccCCcccceeEeeccccc-chhh
Confidence 33444566666 7779999999999833 33333333333311 02456777776666 5444
No 30
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=46.02 E-value=18 Score=30.99 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=14.5
Q ss_pred CCCeEEEeCCCcccccccC
Q 031620 47 ESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 47 ~~p~~vV~SgSMeP~i~~G 65 (156)
..| ||+||||.|.-..+
T Consensus 105 ~kP--VVlTGa~rp~~~~~ 121 (323)
T smart00870 105 DKP--VVLTGAMRPATALS 121 (323)
T ss_pred CCC--EEEECCCCCCCCCC
Confidence 555 89999999998877
No 31
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=42.13 E-value=21 Score=30.75 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCCCeEEEeCCCcccccccC
Q 031620 45 GSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 45 g~~~p~~vV~SgSMeP~i~~G 65 (156)
+...| ||+||||.|.=..+
T Consensus 107 ~~~kP--VVlTGAmrP~~~~~ 125 (335)
T PRK09461 107 NLGKP--VIVTGSQIPLAELR 125 (335)
T ss_pred CCCCC--EEEeCCCCCCCCCC
Confidence 54555 89999999998888
No 32
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=42.08 E-value=17 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=26.0
Q ss_pred CceEEEEecCC-CCCCCchhhccCceeeeeceeeeEEE
Q 031620 84 GEVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAV 120 (156)
Q Consensus 84 g~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~ 120 (156)
.+.+++..+|. +.+-|++. .++++.++|+|.+.
T Consensus 133 ~~~el~lL~~~~~~SfDsRY----fGpipas~vig~aR 166 (173)
T COG4959 133 APSELLLLTDRSSTSFDSRY----FGPIPASQVIGVAR 166 (173)
T ss_pred cCCeEEEEeccCCcccccce----ecccCHHHcceeee
Confidence 35568888887 66789985 46799999999876
No 33
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=41.83 E-value=24 Score=30.25 Aligned_cols=17 Identities=47% Similarity=0.812 Sum_probs=14.4
Q ss_pred CCCeEEEeCCCcccccccC
Q 031620 47 ESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 47 ~~p~~vV~SgSMeP~i~~G 65 (156)
..| ||+||||.|.-..+
T Consensus 105 ~kP--VVlTGA~rp~~~~~ 121 (323)
T cd00411 105 DKP--VVLTGSMRPSTELS 121 (323)
T ss_pred CCC--EEEECCCCCCCCcC
Confidence 555 89999999998877
No 34
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=37.10 E-value=21 Score=30.37 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=11.4
Q ss_pred CCCeEEEeCCCcccccccC
Q 031620 47 ESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 47 ~~p~~vV~SgSMeP~i~~G 65 (156)
+.| ||++|||.|.-..+
T Consensus 100 ~kP--VVlTGa~~P~~~~~ 116 (313)
T PF00710_consen 100 DKP--VVLTGAMRPLSAPG 116 (313)
T ss_dssp SSE--EEEE--SS-TTSTT
T ss_pred CCC--EEEeCCcCCCcCCC
Confidence 555 88999999998877
No 35
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=35.20 E-value=53 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.0
Q ss_pred CCCeEEEeCCCcccccccC
Q 031620 47 ESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 47 ~~p~~vV~SgSMeP~i~~G 65 (156)
..| ||++|||.|.=..+
T Consensus 167 ~kP--VVlTGAqrp~~~~~ 183 (404)
T TIGR02153 167 PVP--VVLVGAQRSSDRPS 183 (404)
T ss_pred CCC--EEEECCCCCCCCCC
Confidence 455 89999999987776
No 36
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=35.03 E-value=35 Score=29.77 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=15.7
Q ss_pred hhCCCCCeEEEeCCCcccccccC
Q 031620 43 ITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 43 ~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+....| ||+||||.|.=..+
T Consensus 128 ~l~~~kP--VVlTGAmrP~~~~~ 148 (349)
T TIGR00520 128 TVKSDKP--VVIVGAMRPSTSVS 148 (349)
T ss_pred HcCCCCC--EEEECCCCCCCCcC
Confidence 3444555 89999999987777
No 37
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=33.36 E-value=1.7e+02 Score=23.62 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=34.8
Q ss_pred CCeEEEeCCCcccc-cccCCCccEEEEEEEeeecc------CC---CceEEEEecC------CCCCCCchhhccCceeee
Q 031620 48 SPVVVVLSGSMEPG-FKRGREIPIVHRVIKVHERQ------DT---GEVEVLTKGD------NNYGDDRLLYAQGQLWLK 111 (156)
Q Consensus 48 ~p~~vV~SgSMeP~-i~~G~~~~i~HRVi~v~~~~------~~---g~~~~~TkGD------nN~~~D~~~y~~~~~~V~ 111 (156)
..++-|.+.||... +..| +.+++|+--.....+ ++ --..|..+|+ .|+...|-. ++
T Consensus 112 ~f~L~V~GdSM~~~gi~dG-DlvvV~~~~~a~~GdiVvA~i~g~e~TvKrl~~~g~~i~L~p~Np~~~~i~-------~~ 183 (201)
T COG1974 112 TFFLRVSGDSMIDAGILDG-DLVVVDPTEDAENGDIVVALIDGEEATVKRLYRDGNQILLKPENPAYPPIP-------VD 183 (201)
T ss_pred eEEEEecCCccccCcCCCC-CEEEEcCCCCCCCCCEEEEEcCCCcEEEEEEEEeCCEEEEEeCCCCCCCcc-------cC
Confidence 34568888899543 4444 333333322221110 00 0134667777 266555533 33
Q ss_pred --eceeeeEEEEEe
Q 031620 112 --RQHIMGRAVGFL 123 (156)
Q Consensus 112 --~~~I~Gkv~~~i 123 (156)
.-.|+|+++..+
T Consensus 184 ~~~~~I~G~vvgv~ 197 (201)
T COG1974 184 ADSVTILGKVVGVI 197 (201)
T ss_pred ccceEEEEEEEEEE
Confidence 357999998753
No 38
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.07 E-value=30 Score=25.56 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031620 22 QGVSLGMIVTSALIIWKA 39 (156)
Q Consensus 22 ~~l~i~~~l~~~~li~~~ 39 (156)
|++.+++++++++++..+
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 555555555544444333
No 39
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.00 E-value=35 Score=30.36 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCcccccccCCCccEEEEEEEeeeccCCCceEEEEecCC
Q 031620 15 QIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGREIPIVHRVIKVHERQDTGEVEVLTKGDN 94 (156)
Q Consensus 15 ~~r~i~~~~l~i~~~l~~~~li~~~l~~~~g~~~p~~vV~SgSMeP~i~~G~~~~i~HRVi~v~~~~~~g~~~~~TkGDn 94 (156)
+++....+++.+++++++++++|..+. .-..++.-+|.-.|.=+ ...|-|..-++-.+-...++..+.|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~WA~~~-----~~~~~v~a~G~v~p~~~---~~~vq~~~~G~v~~i~V~eG~~V~~G~~ 86 (457)
T TIGR01000 15 RYHNFSTLVIVPIFLLLVFLVLFSLFA-----KKEIVIRTTGTIEPAKI---LSKIQSTSNNAIKENYLKENKFVKKGDL 86 (457)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHhE-----eeeEEEEEeEEEEecCc---eEEEEcCCCcEEEEEEcCCCCEecCCCE
Confidence 333444455556666666777887765 11235555566665422 1234444333322100123457888886
No 40
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=27.00 E-value=1.6e+02 Score=25.74 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=6.3
Q ss_pred eEEEEecCC
Q 031620 86 VEVLTKGDN 94 (156)
Q Consensus 86 ~~~~TkGDn 94 (156)
+..+.|||-
T Consensus 77 G~~V~kGq~ 85 (421)
T TIGR03794 77 GDQVKKGQV 85 (421)
T ss_pred cCEECCCCE
Confidence 457778875
No 41
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=25.74 E-value=1.6e+02 Score=17.81 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031620 14 LQIRQVLTQGVSLGMIVTSALIIWKALM 41 (156)
Q Consensus 14 ~~~r~i~~~~l~i~~~l~~~~li~~~l~ 41 (156)
.+.|+.+...-..+..++.+...|-++.
T Consensus 9 ~~RRdFL~~at~~~gavG~~~~a~Pfv~ 36 (41)
T PF10399_consen 9 PTRRDFLTIATSAVGAVGAAAAAWPFVS 36 (41)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678887777777777888887777654
No 42
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=20.79 E-value=57 Score=26.51 Aligned_cols=15 Identities=53% Similarity=0.857 Sum_probs=12.7
Q ss_pred EEEeCCCcccccccC
Q 031620 51 VVVLSGSMEPGFKRG 65 (156)
Q Consensus 51 ~vV~SgSMeP~i~~G 65 (156)
+.=.||||.|.+..|
T Consensus 7 VLD~SGSM~~~yk~G 21 (200)
T PF10138_consen 7 VLDISGSMRPLYKDG 21 (200)
T ss_pred EEeCCCCCchhhhCc
Confidence 344699999999999
Done!