Query 031620
Match_columns 156
No_of_seqs 175 out of 740
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.0 8.5E-10 2.9E-14 89.3 7.2 34 85-122 190-224 (248)
2 1umu_A UMUD'; induced mutagene 97.4 0.00025 8.7E-09 50.3 5.6 62 50-124 29-112 (116)
3 1jhf_A LEXA repressor; LEXA SO 97.1 0.002 6.8E-08 49.4 7.7 68 50-128 112-201 (202)
4 1kca_A Repressor protein CI; g 96.9 0.0026 8.7E-08 44.9 6.5 59 50-122 15-101 (109)
5 2hnf_A Repressor protein CI101 96.4 0.0078 2.7E-07 43.6 6.3 59 50-122 46-132 (133)
6 3k2z_A LEXA repressor; winged 94.1 0.13 4.3E-06 39.3 6.7 61 50-123 111-193 (196)
7 3bdn_A Lambda repressor; repre 94.0 0.062 2.1E-06 41.5 4.6 58 51-122 143-228 (236)
8 1nns_A L-asparaginase II; amid 66.2 3.2 0.00011 34.5 2.5 23 41-65 100-122 (326)
9 1agx_A Glutaminase-asparaginas 60.6 4.7 0.00016 33.5 2.6 23 41-65 103-125 (331)
10 1wsa_A Asparaginase, asparagin 60.2 4.8 0.00016 33.4 2.6 23 41-65 104-126 (330)
11 2wlt_A L-asparaginase; hydrola 59.9 4.9 0.00017 33.4 2.6 23 41-65 106-128 (332)
12 1o7j_A L-asparaginase; atomic 59.5 4.9 0.00017 33.3 2.5 23 41-65 106-128 (327)
13 4pga_A Glutaminase-asparaginas 59.3 5 0.00017 33.5 2.5 22 42-65 112-133 (337)
14 3nxk_A Cytoplasmic L-asparagin 57.0 5.8 0.0002 33.1 2.5 22 42-65 110-131 (334)
15 2him_A L-asparaginase 1; hydro 56.0 5.9 0.0002 33.3 2.4 19 45-65 127-145 (358)
16 1zq1_A Glutamyl-tRNA(Gln) amid 55.0 6.1 0.00021 34.3 2.4 24 40-65 188-212 (438)
17 2d6f_A Glutamyl-tRNA(Gln) amid 54.0 5.5 0.00019 34.6 2.0 23 41-65 188-210 (435)
18 1wls_A L-asparaginase; structu 49.2 6.9 0.00023 32.5 1.7 21 43-65 97-117 (328)
19 3dqg_A Heat shock 70 kDa prote 30.5 59 0.002 23.6 4.2 23 51-73 12-34 (151)
20 3dob_A Heat shock 70 kDa prote 28.9 65 0.0022 23.4 4.2 22 52-73 13-34 (152)
21 2k9p_A Pheromone alpha factor 26.3 1.3E+02 0.0046 19.8 5.0 33 6-38 9-41 (80)
22 3h0x_A 78 kDa glucose-regulate 23.5 61 0.0021 23.5 3.1 22 52-73 13-34 (152)
23 4e81_A Chaperone protein DNAK; 22.3 95 0.0032 23.9 4.2 24 51-74 13-36 (219)
24 1pi7_A VPU protein, U ORF prot 21.7 1.2E+02 0.0041 17.1 3.8 20 22-41 7-26 (36)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=98.98 E-value=8.5e-10 Score=89.31 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=29.5
Q ss_pred ceEEEEecCC-CCCCCchhhccCceeeeeceeeeEEEEE
Q 031620 85 EVEVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 85 ~~~~~TkGDn-N~~~D~~~y~~~~~~V~~~~I~Gkv~~~ 122 (156)
+.+|+.+||| ++|.|++.| ++|+.++|+||+.+.
T Consensus 190 ~g~yFvmGDNR~nS~DSR~~----G~Vp~~~IvGka~~i 224 (248)
T 1b12_A 190 PGQYFMMGDNRDNSADSRYW----GFVPEANLVGRATAI 224 (248)
T ss_dssp TTEEEEECSBTTSCCCHHHH----CCEEGGGEEEEEEEE
T ss_pred CCcEEEecCCCcccCCCCcc----cccCHHHeEEEEEEE
Confidence 3578999999 889999976 479999999999984
No 2
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=97.40 E-value=0.00025 Score=50.32 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=41.2
Q ss_pred eEEEeCCCccc-ccccC---------------------CCccEEEEEEEeeeccCCCceEEEEecCCCCCCCchhhccCc
Q 031620 50 VVVVLSGSMEP-GFKRG---------------------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 107 (156)
Q Consensus 50 ~~vV~SgSMeP-~i~~G---------------------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~~y~~~~ 107 (156)
.+.|.+.||+| +|+.| ++...+||+... + .+..+.||...+|.. ...
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~~~~~~gdivv~~~~~~~~vKr~~~~------~--~~~L~s~N~~y~~~~-i~~-- 97 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR------P--TVQLIPMNSAYSPIT-ISS-- 97 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETTSCCCTTCEEEEEETTEEEEEEEECS------S--SCEEECSSTTSCCEE-CCT--
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcCCCCCCCCEEEEEECCEEEEEEEEeC------C--cEEEECCCCCCCCEE-cCC--
Confidence 46788999999 89999 345677777652 2 477889986555432 100
Q ss_pred eeeeeceeeeEEEEEec
Q 031620 108 LWLKRQHIMGRAVGFLP 124 (156)
Q Consensus 108 ~~V~~~~I~Gkv~~~iP 124 (156)
-..-+|+|+|+..+-
T Consensus 98 --~~~~~IiG~Vv~~~r 112 (116)
T 1umu_A 98 --EDTLDVFGVVIHVVK 112 (116)
T ss_dssp --TSCEEEEEEEEEEEC
T ss_pred --CCeEEEEEEEEEEEE
Confidence 012479999987653
No 3
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.06 E-value=0.002 Score=49.40 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=41.6
Q ss_pred eEEEeCCCcccc-cccC---------------------CCccEEEEEEEeeeccCCCceEEEEecCCCCCCCchhhccCc
Q 031620 50 VVVVLSGSMEPG-FKRG---------------------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 107 (156)
Q Consensus 50 ~~vV~SgSMeP~-i~~G---------------------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~~y~~~~ 107 (156)
.+.|.+.||+|+ |+.| ++...+||+.. ++ ..+..+.||...+|-. ....
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~~~~~~G~i~v~~~~~~~~vKrl~~-~~------~~~~l~s~N~~y~~~~-~~~~- 182 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK-QG------NKVELLPENSEFKPIV-VDLR- 182 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEECSCCCTTSEEEEEETTEEEEEEEEE-ET------TEEEEECSSTTCCCEE-EETT-
T ss_pred EEEECCCCCCCCCCCCCCEEEEeccCCcCCCeEEEEEECCEEEEEEEEE-eC------CEEEEEECCCCCCCEE-ccCC-
Confidence 356778899999 9999 35667888872 22 2577889975444321 1000
Q ss_pred eeeeeceeeeEEEEEecccce
Q 031620 108 LWLKRQHIMGRAVGFLPYVGW 128 (156)
Q Consensus 108 ~~V~~~~I~Gkv~~~iP~lG~ 128 (156)
-..-+|+|+|+..+-..+|
T Consensus 183 --~~~~~IiG~Vv~~~r~~~~ 201 (202)
T 1jhf_A 183 --QQSFTIEGLAVGVIRNGDW 201 (202)
T ss_dssp --TSCEEEEEEEEEEEEC---
T ss_pred --CCceEEEEEEEEEEEcccc
Confidence 0123699999987654443
No 4
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=96.89 E-value=0.0026 Score=44.94 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=42.0
Q ss_pred eEEEeCCCcc------cccccC---------------------CC-ccEEEEEEEeeeccCCCceEEEEecCCCCCCCch
Q 031620 50 VVVVLSGSME------PGFKRG---------------------RE-IPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRL 101 (156)
Q Consensus 50 ~~vV~SgSMe------P~i~~G---------------------~~-~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~ 101 (156)
.+.|.+.||+ |+|+.| ++ ...+||++.. + ..+..+.||...++..
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~~~~~~Gdivv~~~~~~~~~vKrl~~~--~-----~~~~L~s~N~~y~~~~ 87 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRD--S-----GQVFLQPLNPQYPMIP 87 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETTSCCCTTCEEEEECSTTCEEEEEEEEE--T-----TEEEEECSSTTSCCEE
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecCCcCCCCCEEEEEECCCeEEEEEEEEe--C-----CEEEEEECCCCCCCEE
Confidence 4688899999 999999 33 6788998862 1 1467889986555432
Q ss_pred hhccCceeeeeceeeeEEEEE
Q 031620 102 LYAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 102 ~y~~~~~~V~~~~I~Gkv~~~ 122 (156)
. -..-+|+|+|+..
T Consensus 88 ~-------~~~~~IiG~Vv~~ 101 (109)
T 1kca_A 88 C-------NESCSVVGKVIAS 101 (109)
T ss_dssp C-------CTTCEEEEEEEEE
T ss_pred c-------CCCcEEEEEEEEE
Confidence 1 0235799999875
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=96.38 E-value=0.0078 Score=43.59 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=41.0
Q ss_pred eEEEeCCCcc------cccccC---------------------CC-ccEEEEEEEeeeccCCCceEEEEecCCCCCCCch
Q 031620 50 VVVVLSGSME------PGFKRG---------------------RE-IPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRL 101 (156)
Q Consensus 50 ~~vV~SgSMe------P~i~~G---------------------~~-~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~ 101 (156)
.+.|.+.||+ |+|+.| ++ ...+||++.. + + .+..+.||...++..
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~~~~~~Gdivv~~~~~~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~ 118 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFAKLIRD--S---G--QVFLQPLNPQYPMIP 118 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETTSCCCTTSEEEEEETTTEEEEEEEEEE--T---T--EEEEECSSTTSCCEE
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccCCCCCCCCEEEEEECCCEEEEEEEEEe--C---C--eEEEEECCCCCCCEE
Confidence 4678899999 999999 33 6788888752 1 1 477889986555432
Q ss_pred hhccCceeeeeceeeeEEEEE
Q 031620 102 LYAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 102 ~y~~~~~~V~~~~I~Gkv~~~ 122 (156)
. -..-+|+|+|+.+
T Consensus 119 ~-------~~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 119 C-------NESCSVVGKVIAS 132 (133)
T ss_dssp C-------STTEEEEEEEEEE
T ss_pred c-------CCCCEEEEEEEEE
Confidence 1 0235799999864
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=94.15 E-value=0.13 Score=39.26 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred eEEEeCCCc-ccccccC---------------------CCccEEEEEEEeeeccCCCceEEEEecCCCCCCCchhhccCc
Q 031620 50 VVVVLSGSM-EPGFKRG---------------------REIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 107 (156)
Q Consensus 50 ~~vV~SgSM-eP~i~~G---------------------~~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~~y~~~~ 107 (156)
.+.|.+.|| +|+|..| ++...++|+..- + ..+..+-||...+|- ...
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~~~~~~G~ivv~~~~~~~~vKr~~~~--~-----~~~~L~~~N~~y~~i-~i~--- 179 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQDWAQNGDIVAAMVDGEVTLAKFYQR--G-----DTVELRPANREMSSM-FFR--- 179 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEECSCCCTTCEEEEEETTEEEEEEEEEE--T-----TEEEEECSCTTSCCE-EEE---
T ss_pred EEEEeCCCcCCCCCCCCCEEEEeccCcCCCCCEEEEEECCcEEEEEEEEE--C-----CEEEEEECCCCCCCE-Eec---
Confidence 467888999 6999999 345566666431 1 246677776544332 110
Q ss_pred eeeeeceeeeEEEEEe
Q 031620 108 LWLKRQHIMGRAVGFL 123 (156)
Q Consensus 108 ~~V~~~~I~Gkv~~~i 123 (156)
-..-.|+|+|+..+
T Consensus 180 --~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 180 --AEKVKILGKVVGVF 193 (196)
T ss_dssp --GGGCEEEEEEEEEE
T ss_pred --CCCEEEEEEEEEEE
Confidence 12237899998764
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=93.96 E-value=0.062 Score=41.49 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=37.8
Q ss_pred EEEeCCCcc------cccccC---------------------C-CccEEEEEEEeeeccCCCceEEEEecCCCCCCCchh
Q 031620 51 VVVLSGSME------PGFKRG---------------------R-EIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLL 102 (156)
Q Consensus 51 ~vV~SgSMe------P~i~~G---------------------~-~~~i~HRVi~v~~~~~~g~~~~~TkGDnN~~~D~~~ 102 (156)
+.|.+.||+ |+|+.| + +...++|+... + + .+..+.||...+|-.
T Consensus 143 l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~~~~~g~ivv~~~~~~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~- 214 (236)
T 3bdn_A 143 LEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRG--S---G--QVFLQPLNPQYPMIP- 214 (236)
T ss_dssp EECCSSSSCCCSSCSSCCCSSCEEEECCSSCCCTTSEEEEESTTTCCCCEEEECC--S---S--SCEEECSSTTSCCBC-
T ss_pred EEEeCCCcCCCCCCCCcCCCCCEEEECCCCCCCCCcEEEEEECCCeEEEEEEEEc--C---C--cEEEEeCCCCCCCee-
Confidence 478889999 999999 2 35677777651 1 1 355778875444321
Q ss_pred hccCceeeeeceeeeEEEEE
Q 031620 103 YAQGQLWLKRQHIMGRAVGF 122 (156)
Q Consensus 103 y~~~~~~V~~~~I~Gkv~~~ 122 (156)
.. ..-.|+|+|+.+
T Consensus 215 ~~------~~~~IiG~Vv~~ 228 (236)
T 3bdn_A 215 CN------ESCSVVGKVIAS 228 (236)
T ss_dssp --------CCCEEEEEEEEC
T ss_pred cC------CCcEEEEEEEEE
Confidence 10 235799999975
No 8
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=66.21 E-value=3.2 Score=34.49 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.++.+.| ||++|||.|.=..+
T Consensus 100 s~~l~~~kP--VVlTGAmrP~~~~~ 122 (326)
T 1nns_A 100 DLTVKCDKP--VVMVGAMRPSTSMS 122 (326)
T ss_dssp HHHCCCCSC--EEEECCSSCTTSTT
T ss_pred HHhcCCCCC--EEEeCCCCCCcCCC
Confidence 334577777 89999999998877
No 9
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=60.60 E-value=4.7 Score=33.52 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.8
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.+..+.| ||++|||.|.=..+
T Consensus 103 s~~l~~~kP--VVlTGAmrP~~~~~ 125 (331)
T 1agx_A 103 NLVVHTDKP--IVLVGSMRPSTALS 125 (331)
T ss_dssp HHHCCCSSC--EEEECCSSCTTSTT
T ss_pred HHHcCCCCC--EEEeCCCCCCCCCC
Confidence 334566666 89999999998877
No 10
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=60.20 E-value=4.8 Score=33.44 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=17.8
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.+..+.| ||++|||.|.=..+
T Consensus 104 s~~l~~~kP--VVlTGAmrP~~~~~ 126 (330)
T 1wsa_A 104 NLTVKSQKP--VVLVGAMRPGSSMS 126 (330)
T ss_dssp HHHCCCSSC--EEEECCSSCTTSTT
T ss_pred HHHcCCCCC--EEEeCCCCCCCCCC
Confidence 344566666 89999999998877
No 11
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=59.88 E-value=4.9 Score=33.41 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.+..+.| ||++|||.|.=..+
T Consensus 106 s~~l~~~kP--VVlTGAmrP~~~~~ 128 (332)
T 2wlt_A 106 NLVLHSTKP--VVLVGAMRNASSLS 128 (332)
T ss_dssp HHHCCCSSC--EEEECCSSCTTSTT
T ss_pred HHHhCCCCC--EEEECCCCCCCCCC
Confidence 334466666 89999999998877
No 12
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=59.54 E-value=4.9 Score=33.31 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.7
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.+....| ||++|||.|.=..+
T Consensus 106 s~~l~~~kP--VVlTGAmrP~~~~~ 128 (327)
T 1o7j_A 106 HLTVKSDKP--VVFVAAMRPATAIS 128 (327)
T ss_dssp HHHCCCCSC--EEEECCSSCTTSTT
T ss_pred HHHhCCCCC--EEEeCCCCCCCCCC
Confidence 334456666 89999999998877
No 13
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=59.30 E-value=5 Score=33.55 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=17.7
Q ss_pred HhhCCCCCeEEEeCCCcccccccC
Q 031620 42 CITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 42 ~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.++.+.| ||++|||.|.-..+
T Consensus 112 ~~l~~~kP--VVlTGa~rp~~~~~ 133 (337)
T 4pga_A 112 LVQKTDKP--IVVVGSMRPGTAMS 133 (337)
T ss_dssp HHCCCCSC--EEEECCSSCTTSTT
T ss_pred HHcCCCCC--EEEeCCCCCCCCCC
Confidence 33577776 88999999998877
No 14
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=56.96 E-value=5.8 Score=33.14 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=17.4
Q ss_pred HhhCCCCCeEEEeCCCcccccccC
Q 031620 42 CITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 42 ~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.++.+.| ||++|||.|.=..+
T Consensus 110 ~~l~~~kP--VVlTGa~rp~~~~~ 131 (334)
T 3nxk_A 110 LTIKSDKP--VVLVGAMRPSTAIS 131 (334)
T ss_dssp HHCCCCSC--EEEECCSSCTTSTT
T ss_pred HHcCCCCC--EEEECCCCCCCCCC
Confidence 34577776 88999999997777
No 15
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=56.00 E-value=5.9 Score=33.35 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCCCCeEEEeCCCcccccccC
Q 031620 45 GSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 45 g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.+.| ||++|||.|.=..+
T Consensus 127 ~~~kP--VVlTGAmrP~~~~~ 145 (358)
T 2him_A 127 NLGKP--VIVTGSQIPLAELR 145 (358)
T ss_dssp TCCSC--EEEECCSSCTTSTT
T ss_pred cCCCC--EEEeCCCCCCcCCC
Confidence 57777 89999999998877
No 16
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=54.99 E-value=6.1 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHhh-CCCCCeEEEeCCCcccccccC
Q 031620 40 LMCIT-GSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 40 l~~~~-g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.+.+ +...| ||++|||.|.=..+
T Consensus 188 Lsl~l~~~~KP--VVlTGAqrP~~~~~ 212 (438)
T 1zq1_A 188 LSFMLRNLGKP--VVLVGAQRSSDRPS 212 (438)
T ss_dssp HHHHEESCCSC--EEEECCSSCTTSTT
T ss_pred HHHHHhCCCCC--EEEeCCCCCCCCCC
Confidence 34445 77777 89999999998877
No 17
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=53.99 E-value=5.5 Score=34.57 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHhhCCCCCeEEEeCCCcccccccC
Q 031620 41 MCITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 41 ~~~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
.+.++...| ||++|||.|.=..+
T Consensus 188 sl~l~~~KP--VVlTGAqrP~~~~~ 210 (435)
T 2d6f_A 188 SFMLRTPVP--VVFTGAQRSSDRPS 210 (435)
T ss_dssp HHHEECSSC--EEEECCSSCTTSTT
T ss_pred HHHhCCCCC--EEEECCCCCCCCCC
Confidence 344577777 89999999998877
No 18
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=49.20 E-value=6.9 Score=32.49 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred hhCCCCCeEEEeCCCcccccccC
Q 031620 43 ITGSESPVVVVLSGSMEPGFKRG 65 (156)
Q Consensus 43 ~~g~~~p~~vV~SgSMeP~i~~G 65 (156)
+.+.+.| ||++|||.|.=..+
T Consensus 97 l~~~~kP--VVlTGAqrP~~~~~ 117 (328)
T 1wls_A 97 LRNPPIP--IVLTGSMLPITEKN 117 (328)
T ss_dssp EESCSSE--EEEECCSSCTTSSS
T ss_pred HhCCCCC--EEEECCCCCCCCCC
Confidence 3477776 89999999998887
No 19
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=30.47 E-value=59 Score=23.58 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=17.6
Q ss_pred EEEeCCCcccccccCCCccEEEE
Q 031620 51 VVVLSGSMEPGFKRGREIPIVHR 73 (156)
Q Consensus 51 ~vV~SgSMeP~i~~G~~~~i~HR 73 (156)
+...+|.|.|.|+++...|....
T Consensus 12 ie~~gg~~~~lI~rnt~iP~~k~ 34 (151)
T 3dqg_A 12 IETLGGIMTKLITRNTTIPTKKS 34 (151)
T ss_dssp EEETTTEEEEEECTTCBSSEEEE
T ss_pred EEEcCCEEEEEEECcCccCEEEE
Confidence 34567889999999987777543
No 20
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=28.91 E-value=65 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=17.1
Q ss_pred EEeCCCcccccccCCCccEEEE
Q 031620 52 VVLSGSMEPGFKRGREIPIVHR 73 (156)
Q Consensus 52 vV~SgSMeP~i~~G~~~~i~HR 73 (156)
-..+|.|.|.|+++...|....
T Consensus 13 e~~gg~~~~lI~rnt~iP~~k~ 34 (152)
T 3dob_A 13 ETAGGVMTNLIDRNTRIPTKAC 34 (152)
T ss_dssp EETTTEEEEEECTTCBSSEEEE
T ss_pred EEcCCEEEEEEECcCccCEEEE
Confidence 4557889999999987777543
No 21
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=26.28 E-value=1.3e+02 Score=19.81 Aligned_cols=33 Identities=15% Similarity=0.459 Sum_probs=24.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 031620 6 ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWK 38 (156)
Q Consensus 6 ~~~~~~~~~~~r~i~~~~l~i~~~l~~~~li~~ 38 (156)
++++.+.+.+.|.-+.+...+.+.+...+++|.
T Consensus 9 ~~ld~~~~~~~~~~I~~G~~iGAs~llliil~l 41 (80)
T 2k9p_A 9 DELQGLVNSTVTQAILFGVRSGAAALTLIVVWI 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888876666666664
No 22
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=23.45 E-value=61 Score=23.47 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.2
Q ss_pred EEeCCCcccccccCCCccEEEE
Q 031620 52 VVLSGSMEPGFKRGREIPIVHR 73 (156)
Q Consensus 52 vV~SgSMeP~i~~G~~~~i~HR 73 (156)
-..+|.|.|.|+++...|....
T Consensus 13 ~~~gg~~~~lI~rnt~iP~~k~ 34 (152)
T 3h0x_A 13 ETTGGVMTPLIKRNTAIPTKKS 34 (152)
T ss_dssp EETTTEEEEEECTTCBSSEEEE
T ss_pred EEcCCEEEEEEECcCccCEEEE
Confidence 4557889999999988787543
No 23
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=22.28 E-value=95 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.6
Q ss_pred EEEeCCCcccccccCCCccEEEEE
Q 031620 51 VVVLSGSMEPGFKRGREIPIVHRV 74 (156)
Q Consensus 51 ~vV~SgSMeP~i~~G~~~~i~HRV 74 (156)
+-+.+|.|.|.|++|...|.....
T Consensus 13 ie~~gg~~~~lI~rnt~iP~~k~~ 36 (219)
T 4e81_A 13 IETMGGVMTTLIAKNTTIPTKHSQ 36 (219)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEE
T ss_pred EEEeCCEEEEEEeCcCcccEeEEE
Confidence 355678999999999888876543
No 24
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.67 E-value=1.2e+02 Score=17.15 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031620 22 QGVSLGMIVTSALIIWKALM 41 (156)
Q Consensus 22 ~~l~i~~~l~~~~li~~~l~ 41 (156)
.+..+..++.++.++|..+.
T Consensus 7 ~ivalivalIiaIVVWtiv~ 26 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVI 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777887654
Done!