BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031621
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Query: 31 KFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-- 88
+ FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+
Sbjct: 19 RNFER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTER 77
Query: 89 GAPSVGVSVEINVSYLD-AAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147
GAP GVSV++N++Y+ A G +I I A VL+ GK +A SV+L K TGK++AQGRHT
Sbjct: 78 GAP--GVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
Query: 148 KYL 150
K+L
Sbjct: 136 KHL 138
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 6/122 (4%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+ GA
Sbjct: 26 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGA 84
Query: 91 PSVGVSVEINVSYLDAA-FGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 149
P GVSV++N++Y+ A G +I I A VL+ GK +A SV+L K TGK++AQGRHTK+
Sbjct: 85 P--GVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKH 142
Query: 150 LA 151
L
Sbjct: 143 LG 144
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 31 KFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-- 88
+ FER ++ + + + PG+VIC KV NA +HGG TATLVD + + A+
Sbjct: 19 RNFER-VLGKITLVSAAPGKVICEXKVEEEHTNAIGTLHGGLTATLVDNISTXALLCTER 77
Query: 89 GAPSVGVSVEINVSYLD-AAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147
GAP GVSV+ N++Y A G +I I A VL+ GK +A SV+L K TGK++AQGRHT
Sbjct: 78 GAP--GVSVDXNITYXSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
Query: 148 KYL 150
K+L
Sbjct: 136 KHL 138
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 6/121 (4%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
F+R +++ + + + P ++IC KV + N +HGG TATLVD + + A+ GA
Sbjct: 21 FDR-VLEKVTLVSAAPEKLICEXKVEEQHTNKLGTLHGGLTATLVDSISTXALXCTERGA 79
Query: 91 PSVGVSVEINVSYLDAA-FGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 149
P GVSV+ N++Y A G EI I A +L+ GK +A SV+L K TGK++AQGRHTK+
Sbjct: 80 P--GVSVDXNITYXSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKH 137
Query: 150 L 150
L
Sbjct: 138 L 138
>pdb|1ZKI|A Chain A, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
pdb|1ZKI|B Chain B, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
Length = 133
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 49 GRVICSMKVP--PRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
G + +++P L N G HGGA +L D+ G A + G V++E ++Y+
Sbjct: 28 GDGVAEVRLPXAAHLRNRGGVXHGGALFSLXDVTXGLACSSSHGFDRQSVTLECKINYIR 87
Query: 106 AAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147
A GE+ A+VL G+ VV E+R+ D K+VA+G+ T
Sbjct: 88 AVADGEVRCVARVLHAGRRSLVVEAEVRQGD--KLVAKGQGT 127
>pdb|3E1E|A Chain A, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|B Chain B, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|C Chain C, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|D Chain D, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|E Chain E, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|F Chain F, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|G Chain G, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|H Chain H, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
Length = 141
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVE 98
G R+D PGRV M L F+H G +T++D A F++ V +VE
Sbjct: 25 GARIDTLLPGRVELCMPYDRALTQQHGFLHAGIVSTVLDSACGYAAFSLMEEEAAVLTVE 84
Query: 99 INVSYLDAAFGGEIEIEAKVLRVGKAVAVVS 129
V++L+ A G A+V++ G+ + V +
Sbjct: 85 FKVNFLNPAEGERFAFRAEVVKPGRTLTVAT 115
>pdb|3NWZ|A Chain A, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|B Chain B, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|C Chain C, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|D Chain D, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
Length = 176
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
E GR + + P + N N +HGG TATL+D G + V+ E+N+ Y+
Sbjct: 60 EDGRFEVRLPIGPLVNNPLNXVHGGITATLLDTAXGQXVNRQLPDGQSAVTSELNIHYVK 119
Query: 106 AAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 144
G + A ++ GK VV ++ D G+ VA G
Sbjct: 120 PGXGTYLRAVASIVHQGKQRIVVEGKV-YTDQGETVAXG 157
>pdb|3DKZ|A Chain A, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c.
pdb|3DKZ|B Chain B, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c
Length = 142
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 56 KVPPR--LLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFGGEI 112
++P R L+N+ +HGG +++D AAI P VGV +++ N S+ G++
Sbjct: 34 RLPARADLVNSRGDIHGGTLXSVLDFTLGAAI-RGDTPEVGVATIDXNTSFXSPGR-GDL 91
Query: 113 EIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147
IE + LR G ++A E+R G++VA+ T
Sbjct: 92 VIETRCLRRGASIAFCEGEIRDS-AGELVAKATAT 125
>pdb|3E29|A Chain A, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|B Chain B, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|C Chain C, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|D Chain D, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a
Length = 144
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 69 HGGATATLVDLVGSAAI-FTVGAPSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKAVAV 127
HGG ATLVD G A+ G P + + +V Y A G++ E +V+ GK A
Sbjct: 54 HGGILATLVDAAGDYAVALKTGHPV--PTXDXHVDYHRVATPGDLRAEGQVIHFGKRFAT 111
Query: 128 VSVELRKKDTGKIVAQGR 145
+ D G +VA GR
Sbjct: 112 AHARVLDXD-GNLVASGR 128
>pdb|1VH5|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH5|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|C Chain C, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|D Chain D, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|E Chain E, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|F Chain F, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|G Chain G, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|H Chain H, Crystal Structure Of A Putative Thioesterase
Length = 148
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAAFGGE 111
+M V R +HGGA+ L + +GS A + T G V V +EIN +++ +A G
Sbjct: 41 TMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGR 99
Query: 112 IEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147
+ K L +G V +E+ + G++ R T
Sbjct: 100 VRGVCKPLHLGSRHQVWQIEI-FDEKGRLCCSSRLT 134
>pdb|4AE8|A Chain A, Crystal Structure Of Human Them4
pdb|4AE8|B Chain B, Crystal Structure Of Human Them4
pdb|4AE8|C Chain C, Crystal Structure Of Human Them4
pdb|4AE8|D Chain D, Crystal Structure Of Human Them4
Length = 211
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 104 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 155
>pdb|4GAH|A Chain A, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
pdb|4GAH|B Chain B, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
Length = 209
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 94 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 145
>pdb|1SBK|A Chain A, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|B Chain B, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|C Chain C, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|D Chain D, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29
Length = 144
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 67 FMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKA 124
+HGGA+ L + +GS A + T G V V +EIN +++ +A G + K L +G
Sbjct: 52 LLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGRVRGVCKPLHLGSR 110
Query: 125 VAVVSVELRKKDTGKIVAQGRHT 147
V +E+ + G++ R T
Sbjct: 111 HQVWQIEI-FDEKGRLCCSSRLT 132
>pdb|1SC0|A Chain A, X-Ray Structure Of Yb61_haein Northeast Structural
Genomics Consortium Target Ir63
pdb|1SC0|B Chain B, X-Ray Structure Of Yb61_haein Northeast Structural
Genomics Consortium Target Ir63
Length = 138
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 68 MHGGATATLVDLVGSAA---IFTVGAPSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKA 124
+HGG + L + +GS A G VG ++IN ++L G++ A + +G+
Sbjct: 53 LHGGVSVALAETIGSLAGSLCLEEGKTVVG--LDINANHLRPVRSGKVTARATPINLGRN 110
Query: 125 VAVVSVELRKKDT 137
+ V +++R ++
Sbjct: 111 IQVWQIDIRTEEN 123
>pdb|2B6E|A Chain A, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|B Chain B, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|C Chain C, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|D Chain D, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|E Chain E, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|F Chain F, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|G Chain G, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|2B6E|H Chain H, X-Ray Crystal Structure Of Protein Hi1161 From Haemophilus
Influenzae. Northeast Structural Genomics Consortium
Target Ir63.
pdb|3LZ7|A Chain A, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|B Chain B, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|C Chain C, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
pdb|3LZ7|D Chain D, Crystal Structure Of Thioesterase Hi1161 Ec3.1.2.- From
Haemophilus Influenzae. Orthorombic Crystal Form.
Northeast Structural Genomics Consortium Target Ir63
Length = 146
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 68 MHGGATATLVDLVGSAA---IFTVGAPSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKA 124
+HGG + L + +GS A G VG ++IN ++L G++ A + +G+
Sbjct: 53 LHGGVSVALAETIGSLAGSLCLEEGKTVVG--LDINANHLRPVRSGKVTARATPINLGRN 110
Query: 125 VAVVSVELRKKDT 137
+ V +++R ++
Sbjct: 111 IQVWQIDIRTEEN 123
>pdb|3S4K|A Chain A, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
pdb|3S4K|B Chain B, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
Length = 144
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIF----TVGAPSVGVSVEINVSYLDAAF 108
+ V P+LL +HGG +++ + S A F + G V V N ++ +
Sbjct: 39 AQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSIS 98
Query: 109 GGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGR 145
G + A+ L G+ + V + DT ++VA+G+
Sbjct: 99 SGMVYGTAEPLHRGRRQQLWLVTI-TDDTDRVVARGQ 134
>pdb|3E8P|A Chain A, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|B Chain B, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|C Chain C, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|D Chain D, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246
Length = 164
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 33/103 (32%)
Query: 67 FMHGGATATLVDLVGSAAIF--------------------TVGAPSVGVSVEINVSYLDA 106
+HGG TAT++D+VG F T+G +++ V YL
Sbjct: 67 ILHGGVTATVLDVVGGLTAFAGLVASRDDWTIEELQQRLQTLG------TIDXRVDYLRP 120
Query: 107 AFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 149
G V+R G V+V EL + QG H +
Sbjct: 121 GRGQIFTGTGSVIRAGNRVSVCRXELHNE-------QGTHIAF 156
>pdb|3HDU|A Chain A, Crystal Structure Of A Putative Thioesterase (Syn_01977)
From Syntrophus Aciditrophicus Sb At 2.50 A Resolution
pdb|3HDU|B Chain B, Crystal Structure Of A Putative Thioesterase (Syn_01977)
From Syntrophus Aciditrophicus Sb At 2.50 A Resolution
pdb|3HDU|C Chain C, Crystal Structure Of A Putative Thioesterase (Syn_01977)
From Syntrophus Aciditrophicus Sb At 2.50 A Resolution
Length = 157
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 25/147 (17%)
Query: 20 KNKSTMEEMPTKFFERFI----MQGLRVDLSEPGRVICSMKVPPRLLNAGN----FMHGG 71
KN+ + + FE I + GL+V P +V S + L+ GN ++GG
Sbjct: 7 KNEEVLFSAVNEIFEEKIPFNKIIGLKVRFISPEQVKLSFEXRDELI--GNAIRRXLYGG 64
Query: 72 ATATLVDLVGSAAIFT------VGAPS------VG--VSVEINVSYLDAAFGGEIEIEAK 117
++ +D A F G P +G + ++V YL G E
Sbjct: 65 VISSAIDXTAGLAAFXGFQEKXSGKPXEEKLAXIGRLSTXSLHVEYLRPGLGREFVCTGY 124
Query: 118 VLRVGKAVAVVSVELRKKDTGKIVAQG 144
+R G VAV+ EL D +++A G
Sbjct: 125 NVRTGNKVAVIRTEL-XNDQDELIAVG 150
>pdb|1VH9|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH9|B Chain B, Crystal Structure Of A Putative Thioesterase
Length = 149
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIF--TVGAPSVGVSVEINVSYLDAAFGGEI 112
M V R +HGGA+A L + +GS A F T V V E+N ++ G++
Sbjct: 42 MPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCV-VGTELNATHHRPVSEGKV 100
Query: 113 EIEAKVLRVGK 123
+ L +G+
Sbjct: 101 RGVCQPLHLGR 111
>pdb|3HYK|A Chain A, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|B Chain B, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|C Chain C, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
Length = 122
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 121 VGKAVAVVSVELRKKDTGK--IVAQGRHTKYLAIS 153
+GK V+ + +E+R D GK ++ H +L+IS
Sbjct: 71 IGKEVSFLDIEVRNDDRGKPILITSTEHIVHLSIS 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,894,783
Number of Sequences: 62578
Number of extensions: 141509
Number of successful extensions: 403
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 27
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)