Query 031621
Match_columns 156
No_of_seqs 126 out of 1147
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 1.7E-28 3.7E-33 171.8 16.4 112 39-151 24-136 (136)
2 PRK10254 thioesterase; Provisi 100.0 6.6E-28 1.4E-32 168.8 17.9 112 39-151 24-136 (137)
3 PLN02322 acyl-CoA thioesterase 99.9 4E-26 8.6E-31 162.2 17.0 113 39-151 16-134 (154)
4 PRK11688 hypothetical protein; 99.9 8.5E-26 1.8E-30 161.4 16.8 134 1-150 4-153 (154)
5 TIGR00369 unchar_dom_1 unchara 99.9 1.1E-25 2.3E-30 153.8 16.0 111 39-150 6-117 (117)
6 COG2050 PaaI HGG motif-contain 99.9 2.9E-25 6.2E-30 156.5 16.6 116 39-154 24-140 (141)
7 TIGR02286 PaaD phenylacetic ac 99.9 9.7E-25 2.1E-29 148.5 16.2 110 39-151 4-114 (114)
8 KOG3328 HGG motif-containing t 99.9 1.7E-24 3.6E-29 150.2 13.4 118 39-156 27-145 (148)
9 cd03443 PaaI_thioesterase PaaI 99.9 2.8E-20 6.1E-25 125.3 16.6 110 39-149 2-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.9 1.3E-20 2.9E-25 132.3 15.3 111 38-152 11-138 (138)
11 PF14539 DUF4442: Domain of un 99.8 3.1E-18 6.8E-23 119.4 13.8 111 38-150 18-132 (132)
12 cd03442 BFIT_BACH Brown fat-in 99.7 5.3E-16 1.1E-20 105.7 15.8 105 47-152 4-114 (123)
13 PRK10694 acyl-CoA esterase; Pr 99.7 8.6E-16 1.9E-20 107.1 14.7 106 47-153 8-122 (133)
14 COG1607 Acyl-CoA hydrolase [Li 99.7 6E-15 1.3E-19 104.7 15.2 105 48-153 11-121 (157)
15 PF03061 4HBT: Thioesterase su 99.7 3E-15 6.5E-20 94.4 11.3 77 65-142 1-79 (79)
16 cd00556 Thioesterase_II Thioes 99.6 5.5E-14 1.2E-18 92.4 10.6 84 65-149 14-98 (99)
17 PF09500 YiiD_Cterm: Putative 99.5 1.1E-12 2.4E-17 92.2 13.9 125 4-151 2-143 (144)
18 PRK04424 fatty acid biosynthes 99.5 5.2E-12 1.1E-16 92.8 15.8 103 42-150 76-181 (185)
19 cd00586 4HBT 4-hydroxybenzoyl- 99.5 6.5E-12 1.4E-16 82.7 14.3 98 53-151 3-109 (110)
20 PLN02647 acyl-CoA thioesterase 99.4 2.4E-11 5.2E-16 99.3 15.6 110 44-153 81-211 (437)
21 PLN02647 acyl-CoA thioesterase 99.2 8.2E-10 1.8E-14 90.4 15.6 109 44-153 284-403 (437)
22 cd03440 hot_dog The hotdog fol 99.2 2.3E-09 4.9E-14 67.0 14.2 95 53-148 3-99 (100)
23 KOG4781 Uncharacterized conser 99.2 9.1E-11 2E-15 87.2 8.7 90 44-133 120-210 (237)
24 PRK10800 acyl-CoA thioesterase 99.2 3.7E-09 8E-14 73.0 15.7 102 52-154 4-114 (130)
25 TIGR02799 thio_ybgC tol-pal sy 99.1 3.9E-09 8.5E-14 72.2 13.8 99 53-153 3-111 (126)
26 cd03445 Thioesterase_II_repeat 99.0 7.3E-09 1.6E-13 68.0 11.0 79 64-149 14-93 (94)
27 COG0824 FcbC Predicted thioest 99.0 4.9E-08 1.1E-12 68.4 14.9 103 50-154 5-116 (137)
28 TIGR00051 acyl-CoA thioester h 99.0 3.9E-08 8.4E-13 66.1 13.5 97 55-152 2-107 (117)
29 PF13622 4HBT_3: Thioesterase- 99.0 2.1E-08 4.5E-13 76.6 12.4 83 65-153 9-91 (255)
30 PF13279 4HBT_2: Thioesterase- 98.9 1.7E-07 3.6E-12 63.7 14.6 97 57-154 1-107 (121)
31 COG4109 Predicted transcriptio 98.9 2.7E-08 5.9E-13 78.5 10.1 96 52-150 334-430 (432)
32 PRK07531 bifunctional 3-hydrox 98.8 3E-07 6.5E-12 77.0 15.1 107 46-153 341-455 (495)
33 PRK00006 fabZ (3R)-hydroxymyri 98.7 6.2E-06 1.3E-10 58.1 16.6 108 43-152 28-146 (147)
34 cd03449 R_hydratase (R)-hydrat 98.6 1.7E-06 3.6E-11 59.1 12.4 80 65-149 45-127 (128)
35 cd01288 FabZ FabZ is a 17kD be 98.6 7.5E-06 1.6E-10 56.2 15.7 106 43-150 13-130 (131)
36 COG5496 Predicted thioesterase 98.5 1.8E-05 3.9E-10 54.0 13.4 90 65-156 28-119 (130)
37 TIGR00189 tesB acyl-CoA thioes 98.4 2.2E-06 4.8E-11 66.2 9.9 77 66-149 21-98 (271)
38 KOG2763 Acyl-CoA thioesterase 98.4 5.2E-06 1.1E-10 66.2 10.5 91 42-133 191-283 (357)
39 PRK10526 acyl-CoA thioesterase 98.2 3.1E-05 6.7E-10 60.6 11.1 81 64-151 30-111 (286)
40 cd01289 FabA_like Domain of un 98.1 0.00076 1.6E-08 47.2 16.5 107 43-151 19-137 (138)
41 cd00493 FabA_FabZ FabA/Z, beta 98.1 0.00075 1.6E-08 46.0 16.1 104 43-148 12-129 (131)
42 PRK13188 bifunctional UDP-3-O- 98.1 0.00038 8.2E-09 57.8 16.5 111 42-154 341-463 (464)
43 PLN02868 acyl-CoA thioesterase 98.1 2.7E-05 5.9E-10 63.8 9.8 99 43-151 138-237 (413)
44 PLN02370 acyl-ACP thioesterase 98.1 0.0005 1.1E-08 56.5 16.9 105 50-154 139-258 (419)
45 cd03441 R_hydratase_like (R)-h 98.1 0.0001 2.2E-09 50.0 11.0 80 64-147 41-125 (127)
46 cd03455 SAV4209 SAV4209 is a S 98.1 0.00016 3.5E-09 49.3 11.8 76 67-148 45-122 (123)
47 cd03451 FkbR2 FkbR2 is a Strep 98.1 6.9E-05 1.5E-09 52.4 9.9 84 66-153 54-145 (146)
48 TIGR01750 fabZ beta-hydroxyacy 98.0 0.00067 1.5E-08 47.2 14.5 105 43-149 21-139 (140)
49 cd03447 FAS_MaoC FAS_MaoC, the 98.0 0.00042 9.2E-09 47.7 12.1 80 66-149 43-124 (126)
50 cd03446 MaoC_like MoaC_like 97.8 0.00036 7.7E-09 48.4 9.7 79 67-149 52-139 (140)
51 PRK13692 (3R)-hydroxyacyl-ACP 97.8 0.00059 1.3E-08 48.9 10.7 57 95-152 85-146 (159)
52 cd03453 SAV4209_like SAV4209_l 97.8 0.00094 2E-08 45.8 11.4 76 66-147 45-125 (127)
53 cd03452 MaoC_C MaoC_C The C-t 97.7 0.00086 1.9E-08 47.0 10.5 82 67-153 52-141 (142)
54 cd03454 YdeM YdeM is a Bacillu 97.7 0.00098 2.1E-08 46.3 10.2 51 99-150 81-139 (140)
55 PRK08190 bifunctional enoyl-Co 97.6 0.0026 5.7E-08 53.1 12.8 82 67-153 60-144 (466)
56 PRK13691 (3R)-hydroxyacyl-ACP 97.5 0.0015 3.3E-08 47.1 10.0 56 97-153 87-147 (166)
57 PF07977 FabA: FabA-like domai 97.5 0.016 3.4E-07 40.2 15.1 101 43-145 13-138 (138)
58 PF01643 Acyl-ACP_TE: Acyl-ACP 97.5 0.011 2.4E-07 45.6 14.5 102 52-154 5-122 (261)
59 cd03444 Thioesterase_II_repeat 97.4 0.0092 2E-07 39.6 11.7 82 65-147 14-101 (104)
60 KOG3016 Acyl-CoA thioesterase 97.4 0.0028 6E-08 49.3 10.1 106 42-155 15-121 (294)
61 cd01287 FabA FabA, beta-hydrox 97.3 0.027 5.9E-07 40.0 15.2 101 49-151 27-147 (150)
62 KOG2763 Acyl-CoA thioesterase 97.3 0.0049 1.1E-07 49.4 11.1 97 57-153 15-127 (357)
63 PF13622 4HBT_3: Thioesterase- 96.9 0.01 2.2E-07 45.2 9.1 78 72-150 174-255 (255)
64 COG0764 FabA 3-hydroxymyristoy 96.8 0.092 2E-06 37.2 13.0 109 43-153 25-146 (147)
65 PRK13693 (3R)-hydroxyacyl-ACP 96.8 0.047 1E-06 38.3 11.4 79 65-149 54-140 (142)
66 COG1946 TesB Acyl-CoA thioeste 96.8 0.0048 1.1E-07 48.0 6.6 83 64-153 30-113 (289)
67 TIGR00189 tesB acyl-CoA thioes 96.7 0.038 8.1E-07 42.6 11.1 81 66-147 181-267 (271)
68 TIGR01749 fabA beta-hydroxyacy 96.5 0.18 3.9E-06 36.5 14.8 96 50-147 51-158 (169)
69 cd03450 NodN NodN (nodulation 96.5 0.078 1.7E-06 37.5 10.7 81 67-149 58-146 (149)
70 PF01575 MaoC_dehydratas: MaoC 96.5 0.035 7.6E-07 37.6 8.4 63 65-130 50-113 (122)
71 PF13452 MaoC_dehydrat_N: N-te 96.3 0.034 7.3E-07 38.0 7.8 50 93-143 74-131 (132)
72 PF03756 AfsA: A-factor biosyn 96.3 0.2 4.3E-06 34.4 13.4 97 51-149 24-131 (132)
73 PRK05174 3-hydroxydecanoyl-(ac 96.3 0.26 5.7E-06 35.8 16.2 95 50-146 54-160 (172)
74 cd03448 HDE_HSD HDE_HSD The R 96.3 0.12 2.6E-06 35.2 10.3 71 66-144 45-116 (122)
75 COG2030 MaoC Acyl dehydratase 96.2 0.16 3.5E-06 36.2 11.0 56 97-153 97-157 (159)
76 TIGR02278 PaaN-DH phenylacetic 96.0 0.056 1.2E-06 47.2 9.1 79 67-150 575-661 (663)
77 PRK10526 acyl-CoA thioesterase 95.9 0.24 5.3E-06 38.7 11.8 85 66-151 192-283 (286)
78 PLN02864 enoyl-CoA hydratase 94.7 0.4 8.6E-06 38.1 9.4 60 94-153 94-158 (310)
79 PRK11563 bifunctional aldehyde 94.5 0.16 3.4E-06 44.5 7.4 50 100-150 617-673 (675)
80 PLN02868 acyl-CoA thioesterase 94.5 0.34 7.4E-06 39.8 8.9 80 66-146 325-409 (413)
81 PF01643 Acyl-ACP_TE: Acyl-ACP 94.5 0.73 1.6E-05 35.5 10.2 96 48-149 163-260 (261)
82 PLN02864 enoyl-CoA hydratase 94.1 1.3 2.9E-05 35.1 11.2 89 53-149 206-304 (310)
83 PF02551 Acyl_CoA_thio: Acyl-C 94.0 0.62 1.3E-05 32.3 7.9 80 66-145 44-127 (131)
84 COG1946 TesB Acyl-CoA thioeste 93.6 0.85 1.8E-05 35.8 8.9 85 66-151 192-283 (289)
85 PF14765 PS-DH: Polyketide syn 91.2 5.5 0.00012 30.5 12.8 97 49-150 182-287 (295)
86 COG3884 FatA Acyl-ACP thioeste 89.6 5.1 0.00011 30.6 8.9 60 93-154 55-115 (250)
87 COG3884 FatA Acyl-ACP thioeste 89.4 3 6.4E-05 31.8 7.6 83 51-146 153-237 (250)
88 PLN02370 acyl-ACP thioesterase 89.4 7.3 0.00016 32.4 10.6 95 51-151 302-403 (419)
89 KOG3016 Acyl-CoA thioesterase 88.2 3.6 7.8E-05 32.4 7.6 79 65-144 207-291 (294)
90 TIGR02813 omega_3_PfaA polyket 84.9 13 0.00028 37.9 11.0 51 100-151 2522-2573(2582)
91 COG4706 Predicted 3-hydroxylac 68.7 15 0.00033 26.0 4.8 98 42-142 27-138 (161)
92 PF07862 Nif11: Nitrogen fixat 61.3 5.9 0.00013 22.2 1.4 15 1-15 1-15 (49)
93 PF08671 SinI: Anti-repressor 56.6 8.7 0.00019 19.5 1.4 12 1-12 17-28 (30)
94 PF11906 DUF3426: Protein of u 50.8 80 0.0017 21.7 8.5 46 100-146 56-106 (149)
95 PF09425 CCT_2: Divergent CCT 50.5 10 0.00022 18.9 1.0 11 4-14 6-16 (27)
96 PF11684 DUF3280: Protein of u 49.6 71 0.0015 22.4 5.6 40 109-148 79-119 (140)
97 PF11141 DUF2914: Protein of u 42.7 74 0.0016 19.1 5.5 36 111-147 29-64 (66)
98 smart00634 BID_1 Bacterial Ig- 37.3 59 0.0013 20.5 3.4 34 117-151 11-44 (92)
99 COG3510 CmcI Cephalosporin hyd 35.1 19 0.00042 27.0 1.0 52 53-109 64-115 (237)
100 TIGR03786 strep_pil_rpt strept 34.3 1.1E+02 0.0023 18.3 4.3 24 123-146 30-53 (64)
101 PF04775 Bile_Hydr_Trans: Acyl 31.2 1.7E+02 0.0037 19.8 6.0 42 97-140 5-46 (126)
102 PF04052 TolB_N: TolB amino-te 30.7 1.5E+02 0.0032 19.0 4.7 40 99-139 63-103 (105)
103 PF12476 DUF3696: Protein of u 28.2 27 0.00059 19.8 0.6 14 23-36 31-44 (52)
104 PF10029 DUF2271: Predicted pe 27.5 2.1E+02 0.0046 19.8 5.1 42 91-132 77-120 (139)
105 PF11079 YqhG: Bacterial prote 27.3 55 0.0012 25.5 2.3 14 1-14 1-14 (260)
106 CHL00139 rpl18 ribosomal prote 26.9 1.3E+02 0.0028 20.1 3.8 24 124-147 23-46 (109)
107 PF10862 FcoT: FcoT-like thioe 26.8 2.4E+02 0.0053 20.2 8.4 49 93-141 95-150 (157)
108 PRK05423 hypothetical protein; 26.6 23 0.0005 23.1 0.1 20 1-20 56-75 (104)
109 PF14788 EF-hand_10: EF hand; 24.2 56 0.0012 18.8 1.4 15 1-15 2-16 (51)
110 COG3777 Uncharacterized conser 23.7 3.6E+02 0.0077 21.1 6.6 89 47-147 182-272 (273)
111 PF01336 tRNA_anti-codon: OB-f 23.4 1.6E+02 0.0034 17.0 3.5 29 113-142 2-31 (75)
112 PF10281 Ish1: Putative stress 23.4 64 0.0014 16.9 1.5 15 2-16 5-19 (38)
113 PRK04156 gltX glutamyl-tRNA sy 22.9 2.2E+02 0.0049 24.8 5.4 15 1-15 61-75 (567)
114 KOG4048 Uncharacterized conser 22.5 1.5E+02 0.0033 21.5 3.6 21 2-28 116-136 (201)
115 COG0231 Efp Translation elonga 21.5 1.9E+02 0.0041 19.9 4.0 28 99-126 25-53 (131)
116 PF10648 Gmad2: Immunoglobulin 21.4 2.3E+02 0.005 18.0 5.6 47 100-147 2-49 (88)
117 PF07930 DAP_B: D-aminopeptida 20.6 51 0.0011 21.2 0.8 41 24-64 9-49 (88)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.96 E-value=1.7e-28 Score=171.78 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=104.6
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCCeEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g~i~~~a~ 117 (156)
+|+++.++++|+++++++++++++|+.|.+|||++++|+|.++++++.... .+...+|+++++||++|++.|.++++|+
T Consensus 24 LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g~l~a~a~ 103 (136)
T PRK10293 24 LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCK 103 (136)
T ss_pred cCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCceEEEEEE
Confidence 499999999999999999999999999999999999999999988886643 4456799999999999999889999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
+++.||+..+++++++ |++|+++|.++++++++
T Consensus 104 vv~~Gr~~~~~~~~v~-d~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 104 PLHLGSRHQVWQIEIF-DEKGRLCCSSRLTTAIL 136 (136)
T ss_pred EEecCCCEEEEEEEEE-eCCCCEEEEEEEEEEEC
Confidence 9999999999999999 68999999999999874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.96 E-value=6.6e-28 Score=168.85 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=105.2
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-CCCceeEEEEEEEEEecCCCCCeEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDAAFGGEIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~-~~~~~~~t~~~~i~fl~p~~~g~i~~~a~ 117 (156)
+|+++.++++|+++++++++++++|+.|.+|||++++|+|.++++++... ..+...+|+++++|||+|++.|.++++++
T Consensus 24 LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g~l~a~a~ 103 (137)
T PRK10254 24 LGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEGKVRGVCQ 103 (137)
T ss_pred hCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCCeEEEEEE
Confidence 49999999999999999999999999999999999999999999998754 34567899999999999999889999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
+++.||++.+++++++ |++|+++|.+++++.+.
T Consensus 104 vi~~Gr~~~v~~~~v~-d~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 104 PLHLGRQNQSWEIVVF-DEQGRRCCTCRLGTAVL 136 (137)
T ss_pred EEecCcCEEEEEEEEE-cCCCCEEEEEEEEEEEe
Confidence 9999999999999999 68999999999998875
No 3
>PLN02322 acyl-CoA thioesterase
Probab=99.95 E-value=4e-26 Score=162.17 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=101.8
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~ 117 (156)
+|+++.++++|+++++++++++++|+.|.+|||++++|+|.++++++.........+|+++++||++|++.| .++++++
T Consensus 16 LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~ 95 (154)
T PLN02322 16 LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEAT 95 (154)
T ss_pred CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEE
Confidence 599999999999999999999999999999999999999999988875443333579999999999999999 8999999
Q ss_pred EEEeCceEEEEEEEEEEC----C-CCcEEEEEEEEEEEe
Q 031621 118 VLRVGKAVAVVSVELRKK----D-TGKIVAQGRHTKYLA 151 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~----~-~g~~~a~a~~t~~~~ 151 (156)
+++.||++.+++++++++ + +|+++|.+++|+.+.
T Consensus 96 vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 96 PVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred EEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 999999999999999952 2 379999999999654
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=8.5e-26 Score=161.40 Aligned_cols=134 Identities=29% Similarity=0.426 Sum_probs=111.2
Q ss_pred CchHHHHHHHHcCCCCCCCccccccccCchhhhhheeecCeEEEEecCCEEEEEEEcCCCCcC--CCCcccHHHHHHHHH
Q 031621 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLN--AGNFMHGGATATLVD 78 (156)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~n--~~g~lhGG~l~~l~D 78 (156)
|+.|++++.+++.-. +..| | ..+ +|+++.+++++.++++++++++++| +.|.+|||++++++|
T Consensus 4 ~~~~~~~~~~~~~~~----------~~~p--f-~~~--lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D 68 (154)
T PRK11688 4 LTQEEALKLVGEIFV----------YHMP--F-NRL--LGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLD 68 (154)
T ss_pred cCHHHHHHHHHHHHH----------hcCC--H-HHH--hCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHH
Confidence 567778887776431 0111 1 222 4999999999999999999999995 689999999999999
Q ss_pred HHHHHHHHHhCC--------------CceeEEEEEEEEEecCCCCCeEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEE
Q 031621 79 LVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 144 (156)
Q Consensus 79 ~~~~~~~~~~~~--------------~~~~~t~~~~i~fl~p~~~g~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a 144 (156)
.+++++++.... ....+|++++++|++|++.+.+++++++++.|+++.+++++++ +++|+++|++
T Consensus 69 ~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~g~~l~a~a~v~~~g~r~~~~~~~i~-~~~g~lvA~a 147 (154)
T PRK11688 69 VAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGRGERFTATSSVLRAGNKVAVARMELH-NEQGVHIASG 147 (154)
T ss_pred HHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCCCCeEEEEEEEEEccCCEEEEEEEEE-CCCCCEEEEE
Confidence 999999975321 1235899999999999973399999999999999999999999 6889999999
Q ss_pred EEEEEE
Q 031621 145 RHTKYL 150 (156)
Q Consensus 145 ~~t~~~ 150 (156)
+++|++
T Consensus 148 ~~t~~v 153 (154)
T PRK11688 148 TATYLV 153 (154)
T ss_pred EEEEEe
Confidence 999986
No 5
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.94 E-value=1.1e-25 Score=153.79 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=102.6
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-CCCceeEEEEEEEEEecCCCCCeEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDAAFGGEIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~-~~~~~~~t~~~~i~fl~p~~~g~i~~~a~ 117 (156)
+|+++.+.+++++++++++.|+++|+.|++|||++++++|.+++.++... ......+|.+++++|++|++.|.++++++
T Consensus 6 lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g~l~a~a~ 85 (117)
T TIGR00369 6 LGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREGKVRAIAQ 85 (117)
T ss_pred cCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCCEEEEEEE
Confidence 59999999999999999999999999999999999999999998877653 34456799999999999999999999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
+++.||+..+++++++ +++|+++|+++++|++
T Consensus 86 v~~~gr~~~~~~~~i~-~~~g~~va~~~~t~~~ 117 (117)
T TIGR00369 86 VVHLGRQTGVAEIEIV-DEQGRLCALSRGTTAV 117 (117)
T ss_pred EEecCceEEEEEEEEE-CCCCCEEEEEEEEEcC
Confidence 9999999999999999 6899999999999874
No 6
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=2.9e-25 Score=156.47 Aligned_cols=116 Identities=31% Similarity=0.560 Sum_probs=108.0
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCC-CceeEEEEEEEEEecCCCCCeEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGEIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~-~~~~~t~~~~i~fl~p~~~g~i~~~a~ 117 (156)
+|+++.+++++++++++++++++.|+.|++|||++++++|.+++++++.... ....+|+++++||+||++.|+++++|+
T Consensus 24 lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~v~a~a~ 103 (141)
T COG2050 24 LGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGDVTAEAR 103 (141)
T ss_pred cCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCeEEEEEE
Confidence 4999999999999999999999999999999999999999999999988653 345589999999999999999999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
+++.|++..+++++++++++++++|++++++++.++.
T Consensus 104 v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 104 VLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred EEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 9999999999999999767779999999999998764
No 7
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.93 E-value=9.7e-25 Score=148.48 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=101.6
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~ 117 (156)
+|+++.+.+++++.++++++++++|+.|++|||++++++|.+++.++.... ...+|.+++++|++|++.| .+.++++
T Consensus 4 lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~--~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 4 LGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG--DAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred cCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC--CceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 599999999999999999999999999999999999999999887775433 2468999999999999999 9999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
+++.|++..+++++++ +++|+++|.++++|+++
T Consensus 82 v~~~g~~~~~~~~~i~-~~~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVV-NQEGELVALFRGTSRRL 114 (114)
T ss_pred EEEeCCcEEEEEEEEE-cCCCCEEEEEEEEEEEC
Confidence 9999999999999999 58999999999999874
No 8
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=150.21 Aligned_cols=118 Identities=55% Similarity=0.821 Sum_probs=110.6
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~ 117 (156)
.++++...++|++.+++++.++++|+.+++|||+.++++|.++..++....+..+.++++|+++||+|+..| .+.++++
T Consensus 27 ~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~ 106 (148)
T KOG3328|consen 27 NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEAT 106 (148)
T ss_pred CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEE
Confidence 699999999999999999999999999999999999999999998776655556789999999999999999 9999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEecCCCC
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISSKM 156 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~~~ 156 (156)
+++.|+.+.+++|++++..+|+++|+++++.++.+.+++
T Consensus 107 ~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 107 VVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred EeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 999999999999999988889999999999999988763
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.87 E-value=2.8e-20 Score=125.28 Aligned_cols=110 Identities=42% Similarity=0.679 Sum_probs=101.5
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCCeEEEEEE
Q 031621 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEIEIEAK 117 (156)
Q Consensus 39 ~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g~i~~~a~ 117 (156)
+|+.+.+.+++.+++++++.+.++|+.|.+|||++++++|.+++..+.... +....++.+++++|++|++.+.+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~~~v~~~~~ 81 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGGDLTARAR 81 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCCCeEEEEEE
Confidence 478889999999999999999999999999999999999999998887654 4557799999999999999889999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 149 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~ 149 (156)
+.+.|++...++++++ +++|+++|+++++++
T Consensus 82 v~~~g~~~~~~~~~~~-~~~~~~~a~a~~~~~ 112 (113)
T cd03443 82 VVKLGRRLAVVEVEVT-DEDGKLVATARGTFA 112 (113)
T ss_pred EEecCceEEEEEEEEE-CCCCCEEEEEEEEEe
Confidence 9999999999999999 567999999999986
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.87 E-value=1.3e-20 Score=132.28 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=93.5
Q ss_pred ecCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHH----hCCCceeEEEEEEEEEecCCCCCeEE
Q 031621 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT----VGAPSVGVSVEINVSYLDAAFGGEIE 113 (156)
Q Consensus 38 ~~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~----~~~~~~~~t~~~~i~fl~p~~~g~i~ 113 (156)
.+|+++.+++++++++++|+.++ .|+.|++|||++++++|.+++.++.. ...+...++.+++|+|++|+..+ +.
T Consensus 11 ~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~-~~ 88 (138)
T TIGR02447 11 AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD-PV 88 (138)
T ss_pred HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC-eE
Confidence 45999999999999999999997 89999999999999999876554421 22334679999999999999975 56
Q ss_pred EEEEE-------------EEeCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031621 114 IEAKV-------------LRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 152 (156)
Q Consensus 114 ~~a~i-------------~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~ 152 (156)
+++++ .+.||+..++++++++ +|+++|+++++|++.+
T Consensus 89 a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 89 ANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVALP 138 (138)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEeC
Confidence 66555 6889999999999993 7799999999998753
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.80 E-value=3.1e-18 Score=119.36 Aligned_cols=111 Identities=24% Similarity=0.392 Sum_probs=86.3
Q ss_pred ecCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-CCCceeEEEEEEEEEecCCCCCeEEEEE
Q 031621 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDAAFGGEIEIEA 116 (156)
Q Consensus 38 ~~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~-~~~~~~~t~~~~i~fl~p~~~g~i~~~a 116 (156)
..|+++.++++++++++++.++...|+.|++|||++++++|.++++++... +.+..++..+++++|++|++. .+++++
T Consensus 18 ~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g-~v~a~~ 96 (132)
T PF14539_consen 18 TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARG-DVTATA 96 (132)
T ss_dssp CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S--EEEEE
T ss_pred cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCC-cEEEEE
Confidence 459999999999999999999999999999999999999999999888765 456678899999999999885 688887
Q ss_pred EEEEe---CceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 117 KVLRV---GKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 117 ~i~~~---g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
++... .+....++++++ |++|+++|+++.++++
T Consensus 97 ~~~~e~~~~~~~~~~~v~i~-D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 97 ELTEEQIGERGELTVPVEIT-DADGEVVAEATITWYV 132 (132)
T ss_dssp E-TCCHCCHEEEEEEEEEEE-ETTC-EEEEEEEEEEE
T ss_pred EcCHHHhCCCcEEEEEEEEE-ECCCCEEEEEEEEEEC
Confidence 77653 256678999999 6999999999999875
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.73 E-value=5.3e-16 Score=105.70 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=91.0
Q ss_pred cCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEE-EEEEecCCCCC-eEEEEEEEEEeCce
Q 031621 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGG-EIEIEAKVLRVGKA 124 (156)
Q Consensus 47 ~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~-~i~fl~p~~~g-~i~~~a~i~~~g~~ 124 (156)
+++.++.++++++.++|+.|.+|||.+++++|.+++.++...... ..++..+ +++|++|++.| .+.+++++.+.|++
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~-~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~ 82 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGG-RVVTASVDRIDFLKPVRVGDVVELSARVVYTGRT 82 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCC-cEEEEEECceEEcCccccCcEEEEEEEEEEecCC
Confidence 567889999999999999999999999999999988877644322 4566677 79999999999 99999999999999
Q ss_pred EEEEEEEEEECC----CCcEEEEEEEEEEEec
Q 031621 125 VAVVSVELRKKD----TGKIVAQGRHTKYLAI 152 (156)
Q Consensus 125 ~~~v~~~i~~~~----~g~~~a~a~~t~~~~~ 152 (156)
++.+++++++++ ++++++++..+++.+.
T Consensus 83 ~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 83 SMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred eEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 999999999643 3579999999998875
No 13
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.71 E-value=8.6e-16 Score=107.15 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=89.5
Q ss_pred cCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEE-EEEEecCCCCC-eEEEEEEEEEeCce
Q 031621 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGG-EIEIEAKVLRVGKA 124 (156)
Q Consensus 47 ~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~-~i~fl~p~~~g-~i~~~a~i~~~g~~ 124 (156)
.++.+.+...+.|.++|+.|.+|||.++.|+|.++++++...... .++|+++ .++|++|++.| .+.+++++++.|++
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~-~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~s 86 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHG-RVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTT 86 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCC-ceEEEEECceEECCCcccCcEEEEEEEEEEccCc
Confidence 455678888999999999999999999999999999998766543 5788888 78999999999 99999999999999
Q ss_pred EEEEEEEEEECC-------CCcEEEEEEEEEEEecC
Q 031621 125 VAVVSVELRKKD-------TGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 125 ~~~v~~~i~~~~-------~g~~~a~a~~t~~~~~~ 153 (156)
++.++++++.+. +.++++.+..+|+.++.
T Consensus 87 S~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~ 122 (133)
T PRK10694 87 SISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP 122 (133)
T ss_pred eEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC
Confidence 999999998411 13457888888877643
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.67 E-value=6e-15 Score=104.71 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEE-EEEEecCCCCC-eEEEEEEEEEeCceE
Q 031621 48 PGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGG-EIEIEAKVLRVGKAV 125 (156)
Q Consensus 48 ~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~-~i~fl~p~~~g-~i~~~a~i~~~g~~~ 125 (156)
.+.+.++.-+.|.+.|+.|.+|||.+++++|.++++++.....+ .++|+++ +++|++|++.| .+.+.+++.+.||++
T Consensus 11 ~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~-~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTS 89 (157)
T COG1607 11 EGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGG-RVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTS 89 (157)
T ss_pred CceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCC-eEEEEEeceEEEccccccCcEEEEEEEEeecCccc
Confidence 55677888899999999999999999999999999999877654 5677766 99999999999 999999999999999
Q ss_pred EEEEEEEEECC----CCcEEEEEEEEEEEecC
Q 031621 126 AVVSVELRKKD----TGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 126 ~~v~~~i~~~~----~g~~~a~a~~t~~~~~~ 153 (156)
+.+.++++.+. ....++++..+|+.++.
T Consensus 90 m~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~ 121 (157)
T COG1607 90 MEVGVEVWAEDIRSGERRLATSAYFTFVAVDE 121 (157)
T ss_pred EEEEEEEEEecccCCcceEeeeEEEEEEEECC
Confidence 99999999532 23456778888877654
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.66 E-value=3e-15 Score=94.39 Aligned_cols=77 Identities=32% Similarity=0.543 Sum_probs=69.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCC-ceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAP-SVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~-~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
+|.+|||.+++|+|.++..++...+.+ ...++.+++++|++|++.| .+++++++.+.|+++++++++++ +++++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~-~~~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVY-SEDGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEE-ETTSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEE-ECCCcEEC
Confidence 589999999999999999999876543 6789999999999999999 99999999999999999999999 48888776
No 16
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.56 E-value=5.5e-14 Score=92.39 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQ 143 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~ 143 (156)
.+.+|||++++++|.+++.++....+.....|.+++++|++|+..+ .+.+++++++.|++..+.+++++ +++|+++|.
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~-~~~G~lva~ 92 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAY-QRDGKLVAS 92 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEE-CCCCcEEEE
Confidence 7899999999999999988886543334568999999999999998 99999999999999999999999 578999999
Q ss_pred EEEEEE
Q 031621 144 GRHTKY 149 (156)
Q Consensus 144 a~~t~~ 149 (156)
++.++.
T Consensus 93 ~~~~~~ 98 (99)
T cd00556 93 ATQSFL 98 (99)
T ss_pred EEEeEc
Confidence 999875
No 17
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.51 E-value=1.1e-12 Score=92.21 Aligned_cols=125 Identities=21% Similarity=0.287 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCCCCCccccccccCchhhhhheeecCeEEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHH
Q 031621 4 ESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSA 83 (156)
Q Consensus 4 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~ 83 (156)
+++++||....| -...+|+++.++++++++++.|..|+ .|+.|+++||.+++++-.++..
T Consensus 2 ~~Lq~~lh~~IP-------------------ls~~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~ 61 (144)
T PF09500_consen 2 QELQQFLHEHIP-------------------LSKAMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWG 61 (144)
T ss_dssp HHHHHHHHHH-H-------------------HHHHTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCC-------------------hhhhcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHH
Confidence 577888877773 23346999999999999999999996 9999999999999999887666
Q ss_pred HHHH----hCCCceeEEEEEEEEEecCCCCCeEEEEEEEE-------------EeCceEEEEEEEEEECCCCcEEEEEEE
Q 031621 84 AIFT----VGAPSVGVSVEINVSYLDAAFGGEIEIEAKVL-------------RVGKAVAVVSVELRKKDTGKIVAQGRH 146 (156)
Q Consensus 84 ~~~~----~~~~~~~~t~~~~i~fl~p~~~g~i~~~a~i~-------------~~g~~~~~v~~~i~~~~~g~~~a~a~~ 146 (156)
.++. .+.....+..+.+|+|++|+.. .+++++++- +.||-.+.+++++++ +|+++++.++
T Consensus 62 lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~-d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G 138 (144)
T PF09500_consen 62 LVWLQLKEAGLNGDIVIADSNIRYLKPVTG-DFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTG 138 (144)
T ss_dssp HHHHHHHHHT---EEEEEEEEEEE-S---S---EEEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEE
T ss_pred HHHHHHHHhCCCCcEEEEeCceEEcCCCCC-CcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEE
Confidence 6653 2334578999999999999997 466665554 568888999999994 8999999999
Q ss_pred EEEEe
Q 031621 147 TKYLA 151 (156)
Q Consensus 147 t~~~~ 151 (156)
.|++.
T Consensus 139 ~yv~l 143 (144)
T PF09500_consen 139 RYVAL 143 (144)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 18
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.47 E-value=5.2e-12 Score=92.77 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=89.0
Q ss_pred EEEEecCC-EEEEEEEcCCCCc-CCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEE
Q 031621 42 RVDLSEPG-RVICSMKVPPRLL-NAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKV 118 (156)
Q Consensus 42 ~~~~~~~~-~v~~~~~~~~~~~-n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i 118 (156)
++.++++| ++...+.+..++. |..+.+|||++++++|.++... . .+...++...+++|++|+.+| .+++++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~~~~~~~~i~~irF~kPV~pGD~L~~ea~v 151 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-DAELALTGVANIRFKRPVKLGERVVAKAEV 151 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-CCcEEEEEeeeEEEccCCCCCCEEEEEEEE
Confidence 47888898 6899999999998 9999999999999999863322 1 233567788899999999999 99999999
Q ss_pred EEeCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 119 LRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 119 ~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
++.+++...++++++ .+|+++++|..++++
T Consensus 152 ~~~~~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 152 VRKKGNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EEccCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 999998999999999 489999999999976
No 19
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.46 E-value=6.5e-12 Score=82.74 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=86.4
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCc
Q 031621 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGK 123 (156)
Q Consensus 53 ~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~--------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~ 123 (156)
.++.+.+.++|+.|.+|+|.++.++|.+....+...+ .....++.+.+++|++|++.| .+++++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 5678889999999999999999999999887776532 233568889999999999999 9999999999999
Q ss_pred eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 124 AVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 124 ~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
+...++++++ +++|+++|++...+...
T Consensus 83 ~~~~~~~~~~-~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 83 KSFTFEQEIF-REDGELLATAETVLVCV 109 (110)
T ss_pred EEEEEEEEEE-CCCCeEEEEEEEEEEEe
Confidence 9999999999 45899999999988764
No 20
>PLN02647 acyl-CoA thioesterase
Probab=99.39 E-value=2.4e-11 Score=99.31 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=91.0
Q ss_pred EEecCCEEEEEEE------cCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCC-------ceeEEEEE-EEEEecCCCC
Q 031621 44 DLSEPGRVICSMK------VPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAP-------SVGVSVEI-NVSYLDAAFG 109 (156)
Q Consensus 44 ~~~~~~~v~~~~~------~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~-------~~~~t~~~-~i~fl~p~~~ 109 (156)
....+.+..+..+ +++.+.|+.|.+|||.++.++|.++++++..+... ..++|+++ +|+|++|++.
T Consensus 81 k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~ 160 (437)
T PLN02647 81 KTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRV 160 (437)
T ss_pred cccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcC
Confidence 4455567778885 45555999999999999999999999999876533 25788877 9999999999
Q ss_pred C-eEEEEEEEEEeCceEEEEEEEEEECC------CCcEEEEEEEEEEEecC
Q 031621 110 G-EIEIEAKVLRVGKAVAVVSVELRKKD------TGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 110 g-~i~~~a~i~~~g~~~~~v~~~i~~~~------~g~~~a~a~~t~~~~~~ 153 (156)
| .|.+.++|.+.|++++.+.++++.+. +..++++|..+|+.++.
T Consensus 161 g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 161 DVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred CcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 9 99999999999999999999999632 23478899999988764
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.22 E-value=8.2e-10 Score=90.39 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=85.8
Q ss_pred EEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEE-EEEEecCCCCC-eEEEEEEEEEe
Q 031621 44 DLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGG-EIEIEAKVLRV 121 (156)
Q Consensus 44 ~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~-~i~fl~p~~~g-~i~~~a~i~~~ 121 (156)
+..++.+++....+.|.+.|.+|.+|||.++.++|.++++++...... .++|+++ .++|++|++.| .|.++|.|+..
T Consensus 284 v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~~-~~vt~svd~v~F~~PV~vGdil~l~A~V~yt 362 (437)
T PLN02647 284 ILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAGL-RPYFLEVDHVDFLRPVDVGDFLRFKSCVLYT 362 (437)
T ss_pred eeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcCC-ceEEEEecceEecCccccCcEEEEEEEEEEE
Confidence 445666788888999999999999999999999999999888776544 4566655 99999999999 99999999887
Q ss_pred CceE-----EEEE--EEEEEC--CCCcEEEEEEEEEEEecC
Q 031621 122 GKAV-----AVVS--VELRKK--DTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 122 g~~~-----~~v~--~~i~~~--~~g~~~a~a~~t~~~~~~ 153 (156)
|.++ +.++ +.+.+. .+++++..+..||.+.+.
T Consensus 363 ~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 363 ELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred eEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 7544 4444 444432 245678889999887753
No 22
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.21 E-value=2.3e-09 Score=67.05 Aligned_cols=95 Identities=32% Similarity=0.524 Sum_probs=82.2
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEE
Q 031621 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSV 130 (156)
Q Consensus 53 ~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~ 130 (156)
..+.+.+...+..+.+||+.+..++|.+....+.... .....++.+.+++|++|++.| .+.++.++.+.+++...+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 4567778888899999999999999999888876543 334568889999999999999 99999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEE
Q 031621 131 ELRKKDTGKIVAQGRHTK 148 (156)
Q Consensus 131 ~i~~~~~g~~~a~a~~t~ 148 (156)
.++ +++|++++.+..++
T Consensus 83 ~~~-~~~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVR-NEDGKLVATATATF 99 (100)
T ss_pred EEE-CCCCCEEEEEEEEe
Confidence 999 56799999887654
No 23
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=9.1e-11 Score=87.21 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=80.1
Q ss_pred EEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeC
Q 031621 44 DLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVG 122 (156)
Q Consensus 44 ~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g 122 (156)
...+..+.++-+.+.+++++..|.+|||++++++|.+.+++.+...+....+|++++++|.+|++.. .+.+++...+.-
T Consensus 120 yd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~ 199 (237)
T KOG4781|consen 120 YDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVE 199 (237)
T ss_pred EecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhc
Confidence 3445568889999999999999999999999999999999998877777889999999999999999 888999999988
Q ss_pred ceEEEEEEEEE
Q 031621 123 KAVAVVSVELR 133 (156)
Q Consensus 123 ~~~~~v~~~i~ 133 (156)
+|.+...+++.
T Consensus 200 Grk~~~~g~l~ 210 (237)
T KOG4781|consen 200 GRKCKTFGELN 210 (237)
T ss_pred CcccceeeEEE
Confidence 87777777777
No 24
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.19 E-value=3.7e-09 Score=73.01 Aligned_cols=102 Identities=9% Similarity=0.060 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeC
Q 031621 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVG 122 (156)
Q Consensus 52 ~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~--------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g 122 (156)
..+..+++..+++.|.+|-+.++.+++.+........+ .+...+.++.+++|++|+..| .+.++..+.+.|
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~ 83 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMR 83 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeC
Confidence 46778889999999999999999999998666554332 234567789999999999999 999999999999
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 123 KAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 123 ~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
+++..+..+++ +.+|+++|+|..+++..+.+
T Consensus 84 ~~s~~~~~~i~-~~~g~~~a~~~~~~v~~d~~ 114 (130)
T PRK10800 84 GTSLTFTQRIV-NAEGTLLNEAEVLIVCVDPL 114 (130)
T ss_pred cEEEEEEEEEE-cCCCeEEEEEEEEEEEEECC
Confidence 99999999999 57899999999999888653
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.14 E-value=3.9e-09 Score=72.18 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=84.2
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC---------CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeC
Q 031621 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG---------APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVG 122 (156)
Q Consensus 53 ~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~---------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g 122 (156)
..+++++..+++.|.+|.+.+..+++.+........+ .+...+..+.+++|++|++.| .+.+.+++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4677888999999999999999999988665554322 123457779999999999999 999999999999
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 123 KAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 123 ~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
+++..++.++++ +|+++|.+..++...+.
T Consensus 83 ~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 83 GASLVFAQEVRR--GDTLLCEATVEVACVDA 111 (126)
T ss_pred ceEEEEEEEEEe--CCEEEEEEEEEEEEEEC
Confidence 999999999993 78999999999887764
No 26
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.03 E-value=7.3e-09 Score=68.03 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 64 ~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
..+.+|||.+++++..++...+- . .....+++.+|++|+..+ ++.++.++++.||+....++++++ +|+++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~---~--~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~~ 86 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVP---D--DRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVIF 86 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCC---C--CCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEEE
Confidence 57899999999999887665542 1 234679999999999986 999999999999999999999995 799999
Q ss_pred EEEEEEE
Q 031621 143 QGRHTKY 149 (156)
Q Consensus 143 ~a~~t~~ 149 (156)
.++.+|.
T Consensus 87 ~a~~sf~ 93 (94)
T cd03445 87 TATASFQ 93 (94)
T ss_pred EEEEEEe
Confidence 9998874
No 27
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.00 E-value=4.9e-08 Score=68.35 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=88.5
Q ss_pred EEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCceeEEEEEEEEEecCCCCC-eEEEEEEEEE
Q 031621 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGG-EIEIEAKVLR 120 (156)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~--------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~ 120 (156)
.....+.++...++..|.+|-+.+..+++.+-.-.....+ .+...++++++++|++|++.| .+.++.++.+
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 3467788889999999999999999999998666665422 124578999999999999999 9999999999
Q ss_pred eCceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 121 VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 121 ~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
.|+++..+..+|++ ++ ++++++..+.+.++++
T Consensus 85 ~~~~s~~~~~~i~~-~~-~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 85 LGGKSLTLGYEIVN-ED-ELLATGETTLVCVDLK 116 (137)
T ss_pred ecCeEEEEEEEEEe-CC-EEEEEEEEEEEEEECC
Confidence 99999999999995 44 9999999999988753
No 28
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.99 E-value=3.9e-08 Score=66.08 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=78.3
Q ss_pred EEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceE
Q 031621 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAV 125 (156)
Q Consensus 55 ~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~--------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~ 125 (156)
+.+++..+++.|.+|.+.++.+++.+........+ .+...++++.+++|++|++.| .+.++.++.+.|+++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 45677889999999999999999998666554322 123457889999999999999 999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEEEec
Q 031621 126 AVVSVELRKKDTGKIVAQGRHTKYLAI 152 (156)
Q Consensus 126 ~~v~~~i~~~~~g~~~a~a~~t~~~~~ 152 (156)
..++.++++ +++.+++.+..+++..+
T Consensus 82 ~~~~~~i~~-~~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 82 FVFSQEIFN-EDEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEEe-CCCcEEEeeEEEEEEEE
Confidence 999999994 66777666665454444
No 29
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.95 E-value=2.1e-08 Score=76.60 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=65.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCCeEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 144 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a 144 (156)
.+.+|||++++++-.++.... ... .....+++++|++|+..|++++++++++.||+..++++++++ +|++++.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~--~~~--~~~~~s~~~~fl~p~~~~~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a 82 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA--PPP--GFDPHSLHVYFLRPVPPGPVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATA 82 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH--TTT--SSEEEEEEEEESS--BSCEEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc--cCC--CCceEEEEeEeccccccCCEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEE
Confidence 678999988877766554444 111 257789999999999999999999999999999999999994 99999999
Q ss_pred EEEEEEecC
Q 031621 145 RHTKYLAIS 153 (156)
Q Consensus 145 ~~t~~~~~~ 153 (156)
+++|.....
T Consensus 83 ~~~f~~~~~ 91 (255)
T PF13622_consen 83 TASFGRPEP 91 (255)
T ss_dssp EEEEE--TT
T ss_pred EEEEccCcC
Confidence 999987654
No 30
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.92 E-value=1.7e-07 Score=63.65 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred cCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-------CCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEE
Q 031621 57 VPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-------GAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVV 128 (156)
Q Consensus 57 ~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~-------~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v 128 (156)
+++..++ .|.+|.+.+..++|.+-.-..... ..+...++++.+++|++|++.| .++++.++.+.|++++.+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~ 79 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRF 79 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEE
Confidence 3566788 999999999999999855444321 1234678899999999999999 999999999999999999
Q ss_pred EEEEEECCCCcE--EEEEEEEEEEecCC
Q 031621 129 SVELRKKDTGKI--VAQGRHTKYLAISS 154 (156)
Q Consensus 129 ~~~i~~~~~g~~--~a~a~~t~~~~~~~ 154 (156)
+.++++.++|+. +|++..++.....+
T Consensus 80 ~~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 80 EQEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp EEEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred EEEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 999996345554 99999998877654
No 31
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.86 E-value=2.7e-08 Score=78.52 Aligned_cols=96 Identities=22% Similarity=0.280 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEE
Q 031621 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSV 130 (156)
Q Consensus 52 ~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~ 130 (156)
..+..+.|.|.|+.|++..|+++.++-.+.-......-. ...+.-++++.||+|++.. .+++..+++..||+...+++
T Consensus 334 ~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~-~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idv 412 (432)
T COG4109 334 GVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKK-RNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDV 412 (432)
T ss_pred ceEEEechhhccccccchHHHHHHHHHHHHHHHHHHhcC-CceEEEeeeeeeecceecccEEEEeeeeeccccccceeEE
Confidence 344889999999999999999999999988777765432 3567889999999999999 99999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEEEE
Q 031621 131 ELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 131 ~i~~~~~g~~~a~a~~t~~~ 150 (156)
++++ +|.++|+|..++.+
T Consensus 413 ei~~--~~~ivaKAiv~~ql 430 (432)
T COG4109 413 EIYH--DGQIVAKAIVTVQL 430 (432)
T ss_pred EEee--Ccchhhhheeeeec
Confidence 9995 88889999888765
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.80 E-value=3e-07 Score=76.97 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=90.4
Q ss_pred ecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC-------CCceeEEEEEEEEEecCCCCC-eEEEEEE
Q 031621 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGG-EIEIEAK 117 (156)
Q Consensus 46 ~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~-------~~~~~~t~~~~i~fl~p~~~g-~i~~~a~ 117 (156)
.+.-..+.++.+++.+++..|.+|-+.++.++|.+..-.....+ .+...++++.+++|++|++.| .++++.+
T Consensus 341 ~~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~ 420 (495)
T PRK07531 341 LSQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQ 420 (495)
T ss_pred CCCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEE
Confidence 33334578999999999999999999999999998665544322 123457789999999999999 9999999
Q ss_pred EEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 118 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 118 i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
+.+.|++++.++.+++ +.+|+++|++..++.....
T Consensus 421 v~~~~~~s~~~~~~i~-~~~g~l~A~g~~~~v~vD~ 455 (495)
T PRK07531 421 LLSGDEKRLHLFHTLY-DAGGELIATAEHMLLHVDL 455 (495)
T ss_pred EEecCCcEEEEEEEEE-CCCCcEEEEEEEEEEEEEC
Confidence 9999999999999999 5789999999999888764
No 33
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.67 E-value=6.2e-06 Score=58.09 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=78.4
Q ss_pred EEEecC-CEEEEEEEcCCCC--c-CC---CCcccHHHHHHHHHHHHHHHHHHhC--CCceeEEEE-EEEEEecCCCCC-e
Q 031621 43 VDLSEP-GRVICSMKVPPRL--L-NA---GNFMHGGATATLVDLVGSAAIFTVG--APSVGVSVE-INVSYLDAAFGG-E 111 (156)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~--~-n~---~g~lhGG~l~~l~D~~~~~~~~~~~--~~~~~~t~~-~~i~fl~p~~~g-~ 111 (156)
+.++++ ++++....+.++. . ++ ...++|-.+.-++..++++.+.... .+....... -+++|++|+.+| .
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 456654 4677666666543 2 22 4568888887777777766553321 222333333 389999999999 9
Q ss_pred EEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031621 112 IEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 152 (156)
Q Consensus 112 i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~ 152 (156)
+++++++.+..++...++++++ .+|+++++++.++++.+
T Consensus 108 l~i~~~i~~~~~~~v~~~~~~~--~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 108 LILEVELLKQRRGIWKFKGVAT--VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEEEc
Confidence 9999999999899999999998 48999999999998754
No 34
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.63 E-value=1.7e-06 Score=59.07 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCc--eEEEEEEEEEECCCCcEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGK--AVAVVSVELRKKDTGKIV 141 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~--~~~~v~~~i~~~~~g~~~ 141 (156)
.-.+||..++++++.+... ..++...+....+++|++|+..| .+.+++++++... +...++++++ +++|+++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~----~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~-~~~g~~v 119 (128)
T cd03449 45 GRIAHGMLTASLISAVLGT----LLPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCT-NQNGEVV 119 (128)
T ss_pred CceecHHHHHHHHHHHHhc----cCCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEE-eCCCCEE
Confidence 4579999999988764322 11222345667899999999999 9999999997655 7888999999 5889999
Q ss_pred EEEEEEEE
Q 031621 142 AQGRHTKY 149 (156)
Q Consensus 142 a~a~~t~~ 149 (156)
++++.+.+
T Consensus 120 ~~g~~~~~ 127 (128)
T cd03449 120 IEGEAVVL 127 (128)
T ss_pred EEEEEEEe
Confidence 99998865
No 35
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.63 E-value=7.5e-06 Score=56.15 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=80.1
Q ss_pred EEEecC-CEEEEEEEcCCCC---cCCC---CcccHHHHHHHHHHHHHHHHHHhC---CCcee-EEEEEEEEEecCCCCC-
Q 031621 43 VDLSEP-GRVICSMKVPPRL---LNAG---NFMHGGATATLVDLVGSAAIFTVG---APSVG-VSVEINVSYLDAAFGG- 110 (156)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~---~n~~---g~lhGG~l~~l~D~~~~~~~~~~~---~~~~~-~t~~~~i~fl~p~~~g- 110 (156)
+.++++ +.++....++++. ..+. ..++|-.+.-++.++++....... ..... ....-++.|++|+.+|
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 456664 5677666666553 2333 778998888888888777654321 22233 3445699999999999
Q ss_pred eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 111 EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 111 ~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
.+++++++.+.+++...++++++ .+|+++++++.+++.
T Consensus 93 ~l~i~~~v~~~~~~~~~~~~~~~--~~g~~v~~~~~~~~~ 130 (131)
T cd01288 93 QLILEVELLKLRRGIGKFKGKAY--VDGKLVAEAELMFAI 130 (131)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 99999999999999999999998 489999999999875
No 36
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.46 E-value=1.8e-05 Score=53.96 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
...+--+++.++++.++.-++.... .+...+..+..+++++|++.| ++++.+++.+..++...++++.. ++|..+.
T Consensus 28 ~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig 105 (130)
T COG5496 28 LNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIG 105 (130)
T ss_pred cceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEe
Confidence 3456779999999999998887654 355678889999999999999 99999999999999999999998 6999999
Q ss_pred EEEEEEEEecCCCC
Q 031621 143 QGRHTKYLAISSKM 156 (156)
Q Consensus 143 ~a~~t~~~~~~~~~ 156 (156)
+++++-+++++.+|
T Consensus 106 ~g~h~R~iv~~~kf 119 (130)
T COG5496 106 EGTHTRVIVPREKF 119 (130)
T ss_pred eeEEEEEEecHHHH
Confidence 99999999887653
No 37
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.44 E-value=2.2e-06 Score=66.23 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=66.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEE
Q 031621 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 144 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a 144 (156)
+.++||.+++.+=.++...+. +. ....+++++|++|+..+ ++.++.++++.||+....+++++ ++|++++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv~---~~--~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~a 93 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTVP---EE--FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFTL 93 (271)
T ss_pred CceEccHHHHHHHHHHHhcCC---CC--CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEEE
Confidence 589999999988776665552 21 23458999999999998 99999999999999999999999 489999999
Q ss_pred EEEEE
Q 031621 145 RHTKY 149 (156)
Q Consensus 145 ~~t~~ 149 (156)
+++|.
T Consensus 94 ~asf~ 98 (271)
T TIGR00189 94 QASFQ 98 (271)
T ss_pred EEEcc
Confidence 99987
No 38
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.37 E-value=5.2e-06 Score=66.16 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=74.1
Q ss_pred EEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEE-EEEEecCCCCC-eEEEEEEEE
Q 031621 42 RVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGG-EIEIEAKVL 119 (156)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~-~i~fl~p~~~g-~i~~~a~i~ 119 (156)
+.....+..+....-+.|.+.|.+|.+|||+++-+++..+...+...++..+ .+.++ -|+|.+|+..| .+.+.+.+.
T Consensus 191 ~~~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p-~~rsVD~i~F~~pVdvG~~L~f~s~V~ 269 (357)
T KOG2763|consen 191 KMVWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRP-ATRSVDDIEFQKPVDVGCVLTFSSFVT 269 (357)
T ss_pred cceEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCCCc-eEEEechhhccCcceeeeEEEEeeEEE
Confidence 3445666678888899999999999999999999999999999987765433 44444 79999999999 999999999
Q ss_pred EeCceEEEEEEEEE
Q 031621 120 RVGKAVAVVSVELR 133 (156)
Q Consensus 120 ~~g~~~~~v~~~i~ 133 (156)
....+...++++..
T Consensus 270 yT~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 270 YTDNKSIYVQVKAV 283 (357)
T ss_pred EecCCceeEEEEEe
Confidence 98888555555544
No 39
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.18 E-value=3.1e-05 Score=60.59 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=68.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 64 ~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
....++||.+++.+=.++...+ ..+ -..-+++.+|++|+..+ +|..+.+.++.||+....+|++++ +|+++.
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv---~~~--~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q--~g~~if 102 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETV---PEE--RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ--NGKPIF 102 (286)
T ss_pred CCCceechHHHHHHHHHHHhcC---CCC--CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE--CCEEEE
Confidence 3577999999998877665555 222 24569999999999988 999999999999999999999994 899999
Q ss_pred EEEEEEEEe
Q 031621 143 QGRHTKYLA 151 (156)
Q Consensus 143 ~a~~t~~~~ 151 (156)
.++++|...
T Consensus 103 ~~~~sF~~~ 111 (286)
T PRK10526 103 YMTASFQAP 111 (286)
T ss_pred EEEEEeccC
Confidence 999999854
No 40
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.15 E-value=0.00076 Score=47.16 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=78.4
Q ss_pred EEEecCCEEEEEEEcCCCCc--C-CCCcccHHHHHHHHHHHHHHHHH--H--hC-CCceeEEEE-EEEEEecCCCC-C-e
Q 031621 43 VDLSEPGRVICSMKVPPRLL--N-AGNFMHGGATATLVDLVGSAAIF--T--VG-APSVGVSVE-INVSYLDAAFG-G-E 111 (156)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~--n-~~g~lhGG~l~~l~D~~~~~~~~--~--~~-~~~~~~t~~-~~i~fl~p~~~-g-~ 111 (156)
+.++++++++....++.+.. . +.+.+-|-.+.-.+-++++.... . .+ ++....... =+++|.+|+.. | .
T Consensus 19 v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~ 98 (138)
T cd01289 19 VISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGST 98 (138)
T ss_pred EEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCe
Confidence 46677777777776665432 2 34678888888888887666542 1 21 233333443 49999999755 8 9
Q ss_pred EEEEEEEEEeCc-eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 112 IEIEAKVLRVGK-AVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 112 i~~~a~i~~~g~-~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
+++++++....+ ....++++++ .+|+++|+|+.+++++
T Consensus 99 l~i~~~~~~~~~~~~~~~~~~~~--v~~~~va~a~l~~~~p 137 (138)
T cd01289 99 LLIVVAELLQGDSGLGVFECTIE--DQGGVLASGRLNVYQP 137 (138)
T ss_pred eEEEeeeeeeCCCcEEEEEEEEE--ECCEEEEEEEEEEEcC
Confidence 999999998874 9999999999 4889999999998865
No 41
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.14 E-value=0.00075 Score=45.97 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=77.3
Q ss_pred EEEecC-CEEEEEEEcCCCCc---CCC---CcccHHHHHHHHHHHHHHHHHHhC-----CCcee-EEEEEEEEEecCCCC
Q 031621 43 VDLSEP-GRVICSMKVPPRLL---NAG---NFMHGGATATLVDLVGSAAIFTVG-----APSVG-VSVEINVSYLDAAFG 109 (156)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~~---n~~---g~lhGG~l~~l~D~~~~~~~~~~~-----~~~~~-~t~~~~i~fl~p~~~ 109 (156)
+.++++ ++++.+..+++++. ++. +.+-|-++.-++-++++..+.... ..... ....-+++|++|+.+
T Consensus 12 i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~p 91 (131)
T cd00493 12 VLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLP 91 (131)
T ss_pred EEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCC
Confidence 567777 67888887776643 332 667777777777777766665432 12223 334459999999999
Q ss_pred C-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEE
Q 031621 110 G-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTK 148 (156)
Q Consensus 110 g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~ 148 (156)
| .+++++++.........++++++. +|+++++++.++
T Consensus 92 gd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~~~ 129 (131)
T cd00493 92 GDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAELMA 129 (131)
T ss_pred CCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEE
Confidence 9 999999999988889999999994 699999998443
No 42
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.11 E-value=0.00038 Score=57.80 Aligned_cols=111 Identities=10% Similarity=0.150 Sum_probs=79.7
Q ss_pred EEEEecCCEEEEEEEcCCCC--c-C---CCCcccHHHHHHHHHHHHHHHHHHh-C--CCceeEEEEE-EEEEecCCCCC-
Q 031621 42 RVDLSEPGRVICSMKVPPRL--L-N---AGNFMHGGATATLVDLVGSAAIFTV-G--APSVGVSVEI-NVSYLDAAFGG- 110 (156)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~~--~-n---~~g~lhGG~l~~l~D~~~~~~~~~~-~--~~~~~~t~~~-~i~fl~p~~~g- 110 (156)
++.++++++++....++.+. . + ..+.++|=.+.-++-+++++.+... . .+........ +++|++|+.+|
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 34566666777777666543 2 3 2466888888877777777665422 1 2223334444 89999999999
Q ss_pred eEEEEEEEEE-eCceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 111 EIEIEAKVLR-VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 111 ~i~~~a~i~~-~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
.+++++++++ ..+....++++++ .+|+++++++..+.+..++
T Consensus 421 tL~I~veI~~~~~~giv~f~g~~~--vdGelVaeael~~~v~~~~ 463 (464)
T PRK13188 421 TLIFKVELLSPIRRGICQMQGKAY--VNGKLVCEAELMAQIVKKK 463 (464)
T ss_pred EEEEEEEEEEEecCCEEEEEEEEE--ECCEEEEEEEEEEEEeccC
Confidence 9999999987 5567889999999 5999999999999886543
No 43
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.11 E-value=2.7e-05 Score=63.82 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred EEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEe
Q 031621 43 VDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRV 121 (156)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~ 121 (156)
++..+++..... ..+.. ...+.+|||.+++.+=.++...+ .+. ....+++.+|++|...+ ++..+.+.++.
T Consensus 138 l~~~~~~~f~~~--~~~~~-~~~~~~fGG~~~aqal~Aa~~~~---~~~--~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~ 209 (413)
T PLN02868 138 LEPLEVDIFRGI--TLPDA-PTFGKVFGGQLVGQALAAASKTV---DPL--KLVHSLHAYFLLVGDINLPIIYQVERIRD 209 (413)
T ss_pred cEeccCCeEECC--cCCCC-cccccccchHHHHHHHHHHHccC---CCC--CCceEeeeeecCCCCCCCCEEEEEEEEcC
Confidence 455566643333 33332 23578999999998766555443 222 24568999999999987 99999999999
Q ss_pred CceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 122 GKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 122 g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
||+....+++++ ++|+++..+.++|...
T Consensus 210 Grs~~~r~v~~~--Q~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 210 GHNFATRRVDAI--QKGKVIFTLFASFQKE 237 (413)
T ss_pred CCceEeeEEEEE--ECCeeEEEEeeccccC
Confidence 999999999999 4899999999998764
No 44
>PLN02370 acyl-ACP thioesterase
Probab=98.10 E-value=0.0005 Score=56.47 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=88.6
Q ss_pred EEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhC--------------CCceeEEEEEEEEEecCCCCC-eEEE
Q 031621 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------------APSVGVSVEINVSYLDAAFGG-EIEI 114 (156)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~--------------~~~~~~t~~~~i~fl~p~~~g-~i~~ 114 (156)
..+..+.++...++..|.+.=..++.++..++...+...+ .+...+....+|+|.||+..| .|++
T Consensus 139 ~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V 218 (419)
T PLN02370 139 VFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQV 218 (419)
T ss_pred EEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEE
Confidence 4457778888889999999999999999988777764322 233467789999999999999 9999
Q ss_pred EEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 115 EAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 115 ~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
..++...++..+.-+.++++.++|+++++|+.+|++.+.+
T Consensus 219 ~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~ 258 (419)
T PLN02370 219 DTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKL 258 (419)
T ss_pred EEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECC
Confidence 9999999999999999999544899999999999988753
No 45
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.09 E-value=0.0001 Score=49.95 Aligned_cols=80 Identities=25% Similarity=0.310 Sum_probs=61.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCc----eEEEEEEEEEECCCC
Q 031621 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGK----AVAVVSVELRKKDTG 138 (156)
Q Consensus 64 ~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~----~~~~v~~~i~~~~~g 138 (156)
+.-.+||..+++++..+....... .........+++|.+|+..| .+++++++..... ....+++++. +++|
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~-n~~g 116 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLPG---TDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR-NQGG 116 (127)
T ss_pred CCceechHHHHHHHHhhhhhhccC---cccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEE-eCCC
Confidence 356799999999988765433211 12446678899999999999 9999999997643 4788999999 5889
Q ss_pred cEEEEEEEE
Q 031621 139 KIVAQGRHT 147 (156)
Q Consensus 139 ~~~a~a~~t 147 (156)
+++..++.+
T Consensus 117 ~~v~~g~~~ 125 (127)
T cd03441 117 EVVLSGEAT 125 (127)
T ss_pred CEEEEEEEE
Confidence 988876654
No 46
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.08 E-value=0.00016 Score=49.29 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=58.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCce-EEEEEEEEEECCCCcEEEEE
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKA-VAVVSVELRKKDTGKIVAQG 144 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~-~~~v~~~i~~~~~g~~~a~a 144 (156)
.+||...++++..+..-. .+. ......++++|.+|+..| .+++.+++...... .+.+++++. +++|+++.++
T Consensus 45 ia~G~~~~~~~~~~~~~~---~~~--~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~-nq~G~~v~~g 118 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW---AGP--DARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWAR-NSEGDHVMAG 118 (123)
T ss_pred EEEHHHHHHHHHHHHHHc---cCC--cceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEE-cCCCCEEEeE
Confidence 489999999887653321 121 234467899999999999 99999999864332 778999999 6999999988
Q ss_pred EEEE
Q 031621 145 RHTK 148 (156)
Q Consensus 145 ~~t~ 148 (156)
+.+.
T Consensus 119 ~a~v 122 (123)
T cd03455 119 TATV 122 (123)
T ss_pred EEEE
Confidence 8764
No 47
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.06 E-value=6.9e-05 Score=52.39 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=58.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCc-------eEEEEEEEEEECCC
Q 031621 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGK-------AVAVVSVELRKKDT 137 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~-------~~~~v~~~i~~~~~ 137 (156)
-.+||..+++++-. .................+++|.+|+..| .++++++|++.-. ..+.++++++ +++
T Consensus 54 ~ia~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~ 129 (146)
T cd03451 54 RLVNSLFTLSLALG---LSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY-NQD 129 (146)
T ss_pred ccccHHhHHHHHhh---heehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEE-CCC
Confidence 35788877766532 1111111101111222489999999999 9999999986532 4788999999 699
Q ss_pred CcEEEEEEEEEEEecC
Q 031621 138 GKIVAQGRHTKYLAIS 153 (156)
Q Consensus 138 g~~~a~a~~t~~~~~~ 153 (156)
|+++++++.+..+..+
T Consensus 130 g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 130 GEPVLSFERTALVPKR 145 (146)
T ss_pred CCEEEEEEehhEEEcC
Confidence 9999999999888764
No 48
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.04 E-value=0.00067 Score=47.22 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=73.8
Q ss_pred EEEecC-CEEEEEEEcCCCCc---CC---CCcccHHHHHHHHHHHHHHHHH-HhC----CCceeEEEE-EEEEEecCCCC
Q 031621 43 VDLSEP-GRVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIF-TVG----APSVGVSVE-INVSYLDAAFG 109 (156)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~~---n~---~g~lhGG~l~~l~D~~~~~~~~-~~~----~~~~~~t~~-~~i~fl~p~~~ 109 (156)
+.++++ ++++.+..++++.. ++ ...+=|-++.-++-+++++.+. ... ......... -+++|++|+.+
T Consensus 21 i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 21 ILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 466663 56777777776542 32 3345566666666666554442 111 112334444 49999999999
Q ss_pred C-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEE
Q 031621 110 G-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 149 (156)
Q Consensus 110 g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~ 149 (156)
| .+++.+++.+..++...++++++ .+|+++++++.++.
T Consensus 101 Gd~l~i~~~i~~~~~~~~~~~~~~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 101 GDQLILHAEFLKKRRKIGKFKGEAT--VDGKVVAEAEITFA 139 (140)
T ss_pred CCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEEEEE
Confidence 9 99999999998888999999997 58999999999875
No 49
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=97.96 E-value=0.00042 Score=47.70 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=58.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCC-CcEEEE
Q 031621 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDT-GKIVAQ 143 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~-g~~~a~ 143 (156)
-.+||-..++++-.+.+-. ............+++|++|+..| .++++.+++........+++++++ ++ |+++..
T Consensus 43 ~iahG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~n-q~~g~~V~~ 118 (126)
T cd03447 43 TITHGMYTSAAVRALVETW---AADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARN-EETGELVLR 118 (126)
T ss_pred CeechhHHHHHHHHHHHHh---ccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEE-CCCCCEEEE
Confidence 4489988888876543221 11112334466899999999999 999999999876667788999995 66 899888
Q ss_pred EEEEEE
Q 031621 144 GRHTKY 149 (156)
Q Consensus 144 a~~t~~ 149 (156)
++.+..
T Consensus 119 g~~~v~ 124 (126)
T cd03447 119 GEAEVE 124 (126)
T ss_pred EEEEEe
Confidence 876654
No 50
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.80 E-value=0.00036 Score=48.41 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCC-C-ceeEEEEEEEEEecCCCCC-eEEEEEEEEEeC------ceEEEEEEEEEECCC
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGA-P-SVGVSVEINVSYLDAAFGG-EIEIEAKVLRVG------KAVAVVSVELRKKDT 137 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~-~-~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g------~~~~~v~~~i~~~~~ 137 (156)
.+||..+++++..+. ...... . .......-+++|++|+..| .+++++++++.. +..+.++++++ +++
T Consensus 52 ia~G~~~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~-nq~ 127 (140)
T cd03446 52 IAHGLLTLSIATGLL---QRLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVV-NQR 127 (140)
T ss_pred eeccccHHHHHhhHh---hhcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEE-cCC
Confidence 577777766654332 111111 1 1112223389999999999 999999998653 24678899999 699
Q ss_pred CcEEEEEEEEEE
Q 031621 138 GKIVAQGRHTKY 149 (156)
Q Consensus 138 g~~~a~a~~t~~ 149 (156)
|+++++++.+..
T Consensus 128 g~~v~~~~~~~l 139 (140)
T cd03446 128 GEVVQSGEMSLL 139 (140)
T ss_pred CCEEEEEEEeee
Confidence 999999988764
No 51
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=97.78 E-value=0.00059 Score=48.94 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred EEEEEEEEEecCCCCC-eEEEEEEEEEe----CceEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031621 95 VSVEINVSYLDAAFGG-EIEIEAKVLRV----GKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 152 (156)
Q Consensus 95 ~t~~~~i~fl~p~~~g-~i~~~a~i~~~----g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~ 152 (156)
+-...+++|++|+..| .|+++.+|+.. ++..+.++++++ +++|+++++++.++++.+
T Consensus 85 ~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~-Nq~Ge~V~~~~~~~~~r~ 146 (159)
T PRK13692 85 VQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-NEEGDVVQETYTTLAGRA 146 (159)
T ss_pred EeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEE-cCCCCEEEEEEEEEEEec
Confidence 4445799999999999 99999999743 557899999999 699999999999988864
No 52
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.78 E-value=0.00094 Score=45.75 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=55.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEe----CceEEEEEEEEEECCCCcE
Q 031621 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRV----GKAVAVVSVELRKKDTGKI 140 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~----g~~~~~v~~~i~~~~~g~~ 140 (156)
-.+||-..++++.....- ..+.. ....++++.|++|+..| .++++++++.. ++..+.++++++ +++|++
T Consensus 45 ~i~~G~~~~~~~~~~~~~---~~~~~--~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~-nq~g~~ 118 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD---WVGDP--GRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDAT-DQAGGK 118 (127)
T ss_pred cEecHHHHHHHHHHHHHH---HcCCc--cceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEE-EcCCCE
Confidence 358888888887543322 12211 23367889999999999 99999999743 446788999999 599999
Q ss_pred EEEEEEE
Q 031621 141 VAQGRHT 147 (156)
Q Consensus 141 ~a~a~~t 147 (156)
+..+++.
T Consensus 119 v~~g~a~ 125 (127)
T cd03453 119 KVLGRAI 125 (127)
T ss_pred EEEEEEE
Confidence 8887765
No 53
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.71 E-value=0.00086 Score=46.98 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=57.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCceeEE-EEEEEEEecCCCCC-eEEEEEEEEEeC------ceEEEEEEEEEECCCC
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVS-VEINVSYLDAAFGG-EIEIEAKVLRVG------KAVAVVSVELRKKDTG 138 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t-~~~~i~fl~p~~~g-~i~~~a~i~~~g------~~~~~v~~~i~~~~~g 138 (156)
..||...++++..... ...+...... ..-+++|++|+..| .|+++++|...- +..+.+++++. +++|
T Consensus 52 ia~G~l~~s~~~~l~~----~~~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq~g 126 (142)
T cd03452 52 VAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT-NQNG 126 (142)
T ss_pred eecHHHHHHHHhhhCc----cCCcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEE-ecCC
Confidence 4788777777665321 1112111111 12399999999999 999999998652 23688999999 6999
Q ss_pred cEEEEEEEEEEEecC
Q 031621 139 KIVAQGRHTKYLAIS 153 (156)
Q Consensus 139 ~~~a~a~~t~~~~~~ 153 (156)
+++.+++.+.++..+
T Consensus 127 ~~V~~~~~~~~~~~~ 141 (142)
T cd03452 127 ELVASYDILTLVAKK 141 (142)
T ss_pred CEEEEEEehHeeEec
Confidence 999999988877654
No 54
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.67 E-value=0.00098 Score=46.31 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=43.9
Q ss_pred EEEEEecCCCCC-eEEEEEEEEEe-------CceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 99 INVSYLDAAFGG-EIEIEAKVLRV-------GKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 99 ~~i~fl~p~~~g-~i~~~a~i~~~-------g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
.+++|.+|+..| .|++++++.+. ++..+.+++++. +++|+++++++.+..+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETL-NQRGEVVLTFEATVLV 139 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEE-cCCCCEEEEEEehhee
Confidence 499999999999 99999999855 345788999999 6999999999887654
No 55
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.55 E-value=0.0026 Score=53.11 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEe--CceEEEEEEEEEECCCCcEEEE
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRV--GKAVAVVSVELRKKDTGKIVAQ 143 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~--g~~~~~v~~~i~~~~~g~~~a~ 143 (156)
.+||-.+++++..+.+. ..++...+....+++|.+|+..| +++++.+++.. ++..+.++++++ +++|+++.+
T Consensus 60 IahG~l~~s~~~~l~~~----~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~-nq~G~~V~~ 134 (466)
T PRK08190 60 VAHGMWGGALISAVLGT----RLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCT-NQDGEVVIT 134 (466)
T ss_pred eeCHHHHHHHHHHHHhh----hCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEE-eCCCCEEEE
Confidence 48998888776543211 11222345567899999999999 99999999753 566788999999 599999999
Q ss_pred EEEEEEEecC
Q 031621 144 GRHTKYLAIS 153 (156)
Q Consensus 144 a~~t~~~~~~ 153 (156)
++.+..++.+
T Consensus 135 g~~~~l~~~~ 144 (466)
T PRK08190 135 GTAEVIAPTE 144 (466)
T ss_pred EEEEeecccc
Confidence 9998876644
No 56
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.54 E-value=0.0015 Score=47.11 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=47.6
Q ss_pred EEEEEEEecCCCCC-eEEEEEEEEEe----CceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 97 VEINVSYLDAAFGG-EIEIEAKVLRV----GKAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 97 ~~~~i~fl~p~~~g-~i~~~a~i~~~----g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
..-++.|++|+..| .|+++.+|... ++..+.++.++. +++|++++++..++++...
T Consensus 87 ~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~-NQ~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 87 VDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-NDDGELVMEAYTTLMGQQG 147 (166)
T ss_pred eeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEE-CCCCCEEEEEEEEEEEecC
Confidence 34588899999999 99999988754 445788999999 7999999999999887654
No 57
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.48 E-value=0.016 Score=40.24 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=65.8
Q ss_pred EEEec-CC-E----EEEEEEcCCCCc---C---CCCcccHHHHHHHHHHHHHHHHHHhC----CC----ceeEEEEEEEE
Q 031621 43 VDLSE-PG-R----VICSMKVPPRLL---N---AGNFMHGGATATLVDLVGSAAIFTVG----AP----SVGVSVEINVS 102 (156)
Q Consensus 43 ~~~~~-~~-~----v~~~~~~~~~~~---n---~~g~lhGG~l~~l~D~~~~~~~~~~~----~~----~~~~t~~~~i~ 102 (156)
+.+++ ++ + ++.+..++++.. + ....+=|-.+.-.+-+++++.+.... .. ......--+++
T Consensus 13 v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k 92 (138)
T PF07977_consen 13 VLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVK 92 (138)
T ss_dssp EEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEE
Confidence 45555 43 4 777777765543 2 23556666777666676666665442 11 12344566999
Q ss_pred EecCCCCC--eEEEEEEEEE---eCceEEEEEEEEEECCCCcEEEEEE
Q 031621 103 YLDAAFGG--EIEIEAKVLR---VGKAVAVVSVELRKKDTGKIVAQGR 145 (156)
Q Consensus 103 fl~p~~~g--~i~~~a~i~~---~g~~~~~v~~~i~~~~~g~~~a~a~ 145 (156)
|++|+.+| .+++++++.+ ..+....++++++ .+|+.++++.
T Consensus 93 F~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 93 FRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAY--VDGELVAEAE 138 (138)
T ss_dssp E-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEE--ETTEEEEEEE
T ss_pred ECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEE--ECCEEEEEEC
Confidence 99999998 5899999999 8888999999999 4999999874
No 58
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.47 E-value=0.011 Score=45.60 Aligned_cols=102 Identities=13% Similarity=0.015 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCC--------------CceeEEEEEEEEEecCCCCC-eEEEEE
Q 031621 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFGG-EIEIEA 116 (156)
Q Consensus 52 ~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~--------------~~~~~t~~~~i~fl~p~~~g-~i~~~a 116 (156)
.-.+.++...++..|.+.=..++.++-.+++..+...+. +...+.....+++-+++..| .|+++.
T Consensus 5 ~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~T 84 (261)
T PF01643_consen 5 EKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIET 84 (261)
T ss_dssp EEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEE
T ss_pred EEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEE
Confidence 456788888899999999999999999988877755441 22346668999999999999 999999
Q ss_pred EEEEeCceEEEEEEEEEEC-CCCcEEEEEEEEEEEecCC
Q 031621 117 KVLRVGKAVAVVSVELRKK-DTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 117 ~i~~~g~~~~~v~~~i~~~-~~g~~~a~a~~t~~~~~~~ 154 (156)
.+...++-.+.=+.+++ + ++|+++++|+..|++++..
T Consensus 85 w~~~~~~~~~~R~f~i~-d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIY-DAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp EEEEE-SSEEEEEEEEE---TTS-EEEEEEEEEEEEETT
T ss_pred EeccCCCcEEEEEEEEE-ECCCCcEEEEEEEEEEEEEhh
Confidence 99999999999899999 6 8999999999999988654
No 59
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.40 E-value=0.0092 Score=39.61 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHh-CC----CceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCC
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTV-GA----PSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTG 138 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~-~~----~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g 138 (156)
.-.+|-..++-+.|......+... +. .....+.+-+|.|.+|.... -+..+.+..+.+......+++++ +++|
T Consensus 14 d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~-~~~G 92 (104)
T cd03444 14 DPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIF-TRDG 92 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEE-CCCC
Confidence 346899999999999876555543 32 13568889999999999985 99999999999999999999999 7999
Q ss_pred cEEEEEEEE
Q 031621 139 KIVAQGRHT 147 (156)
Q Consensus 139 ~~~a~a~~t 147 (156)
+++|.+.-.
T Consensus 93 ~LvAs~~Q~ 101 (104)
T cd03444 93 ELVASVAQE 101 (104)
T ss_pred CEEEEEEEe
Confidence 999987654
No 60
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.38 E-value=0.0028 Score=49.29 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=79.6
Q ss_pred EEEEecCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEE
Q 031621 42 RVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLR 120 (156)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~ 120 (156)
+++.++++..+.+-...+. .++.+.++||.+++-+=.|+ ..+... ..+.-++...|++.+... +|.-..+-++
T Consensus 15 ~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQaLaAA---~~TV~e--~f~p~SlH~YFI~~gd~~~pI~Y~V~rir 88 (294)
T KOG3016|consen 15 NLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQALAAA---SKTVEE--MFIPHSLHCYFILVGDPNIPIIYDVKRIR 88 (294)
T ss_pred eeeecCCCceecccCCccc-cccCcccccceehHHHHHHH---Hhcccc--ccccceeeeeeeecCCCCCceEEEeeeec
Confidence 4567777744443333222 36788899998877554433 333322 346679999999999999 9999999999
Q ss_pred eCceEEEEEEEEEECCCCcEEEEEEEEEEEecCCC
Q 031621 121 VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISSK 155 (156)
Q Consensus 121 ~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~~ 155 (156)
.||..++=.|+.+ ++|+++..+..+|.+..++.
T Consensus 89 dGr~F~~R~V~Av--Q~~k~If~~qiSF~~~~ks~ 121 (294)
T KOG3016|consen 89 DGRNFATRSVDAV--QKGKTIFTLQISFQQSEKSS 121 (294)
T ss_pred CCceeEEEEEEEE--ECCeEEEEEEEEEccccCCC
Confidence 9999999999999 59999999999999766553
No 61
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.34 E-value=0.027 Score=39.96 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=72.5
Q ss_pred CEEEEEEEcCCCC--cC----CCCcccHHHHHHHHHHHHHHHHHHhCC-------Cce-eEEEEEEEEEecCCCCC--eE
Q 031621 49 GRVICSMKVPPRL--LN----AGNFMHGGATATLVDLVGSAAIFTVGA-------PSV-GVSVEINVSYLDAAFGG--EI 112 (156)
Q Consensus 49 ~~v~~~~~~~~~~--~n----~~g~lhGG~l~~l~D~~~~~~~~~~~~-------~~~-~~t~~~~i~fl~p~~~g--~i 112 (156)
++++.+-.++++. .. ....+-|-.+.-.+-+++++.+...+. ... .....-+++|.+|+.+| .+
T Consensus 27 g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 27 GYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred cEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEE
Confidence 3677777666543 33 346677888888888887776643221 111 22334489999999998 59
Q ss_pred EEEEEEEEeCc----eEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 113 EIEAKVLRVGK----AVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 113 ~~~a~i~~~g~----~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
.+++++.+.++ ....+++.++ .+|+++++++..-+..
T Consensus 107 ~~e~~i~~~~~~~~~~~~~~~~~~~--vdg~~v~~a~~~~~~~ 147 (150)
T cd01287 107 TYEVHIKEVGRDGPRPYIIADASLW--VDGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEEccCCccEEEEEEEEE--ECCEEEEEEEccEEEe
Confidence 99999998864 8899999999 4999999998765443
No 62
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.31 E-value=0.0049 Score=49.43 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=76.9
Q ss_pred cCCCCcCCCCcccHH-HHHHHHHHHHHHHHHHhC--------CCceeEEEEE-EEEEecCCCCC--eEEEEEEEEEeCce
Q 031621 57 VPPRLLNAGNFMHGG-ATATLVDLVGSAAIFTVG--------APSVGVSVEI-NVSYLDAAFGG--EIEIEAKVLRVGKA 124 (156)
Q Consensus 57 ~~~~~~n~~g~lhGG-~l~~l~D~~~~~~~~~~~--------~~~~~~t~~~-~i~fl~p~~~g--~i~~~a~i~~~g~~ 124 (156)
+.|.+.|+.|..++| -+..|+|++..++.+.+. .+..++|++. .|+|.+|...| .+.+.|.|.+.|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 556667789999999 599999999888875432 1245677765 89999988887 88888999999999
Q ss_pred EEEEEEEEEE--C--CCCcEEEEEEEEEEEecC
Q 031621 125 VAVVSVELRK--K--DTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 125 ~~~v~~~i~~--~--~~g~~~a~a~~t~~~~~~ 153 (156)
++.+.+.+.+ + ....++.+|..+|+..++
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~ 127 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVARDA 127 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEecC
Confidence 9999999995 1 145678899999988754
No 63
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.90 E-value=0.01 Score=45.19 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhCCC--ceeEEEEEEEEE-ecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEE
Q 031621 72 ATATLVDLVGSAAIFTVGAP--SVGVSVEINVSY-LDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 72 ~l~~l~D~~~~~~~~~~~~~--~~~~t~~~~i~f-l~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t 147 (156)
.++.++|............. ....|++++|+| -.|...+ .+.++++....+.-....+++++ +++|+++|.+.-.
T Consensus 174 ~l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~-d~~G~lvA~~~Q~ 252 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLW-DEDGRLVASSRQE 252 (255)
T ss_dssp HHHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEE-ETTS-EEEEEEEE
T ss_pred HHHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEE-CCCCCEEEEEEEE
Confidence 48888888743333333222 345699999997 5555445 99999999888888899999999 6999999998876
Q ss_pred EEE
Q 031621 148 KYL 150 (156)
Q Consensus 148 ~~~ 150 (156)
.+|
T Consensus 253 ~lv 255 (255)
T PF13622_consen 253 ALV 255 (255)
T ss_dssp EE-
T ss_pred eeC
Confidence 553
No 64
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=96.85 E-value=0.092 Score=37.18 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=71.6
Q ss_pred EEE-ecCC-EEEEEEEc--CCCCcC-C--CCcccHHHH-HHHHHHHHHHHHHHhCC--C-ceeEEEEEEEEEecCCCCC-
Q 031621 43 VDL-SEPG-RVICSMKV--PPRLLN-A--GNFMHGGAT-ATLVDLVGSAAIFTVGA--P-SVGVSVEINVSYLDAAFGG- 110 (156)
Q Consensus 43 ~~~-~~~~-~v~~~~~~--~~~~~n-~--~g~lhGG~l-~~l~D~~~~~~~~~~~~--~-~~~~t~~~~i~fl~p~~~g- 110 (156)
+.+ .+++ .+.....+ ++.+.+ | ..-+-.|++ .-.+-+++++.+..... . ......--++.|.+|+.+|
T Consensus 25 v~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd 104 (147)
T COG0764 25 VLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGD 104 (147)
T ss_pred eeeeccCCcEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCC
Confidence 444 3333 45455544 333333 3 233555554 34445556565544332 1 2334444599999999999
Q ss_pred eEEEEEEEEEeC-ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 111 EIEIEAKVLRVG-KAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 111 ~i~~~a~i~~~g-~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
.+.++.++++.+ +......++.. -+|+++++|+..++....
T Consensus 105 ~l~l~~~~~~~~~~~~~~~~~~a~--Vdg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 105 QLELEVKLLKSRRLGIGKAKGVAT--VDGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEEEEEEEEecccceEEEEEEEE--ECCEEEEEEEEEEEEeec
Confidence 999999999998 77778888888 599999999999988654
No 65
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=96.84 E-value=0.047 Score=38.30 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC------eEEEEEEEEEe--CceEEEEEEEEEECC
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG------EIEIEAKVLRV--GKAVAVVSVELRKKD 136 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g------~i~~~a~i~~~--g~~~~~v~~~i~~~~ 136 (156)
.-.+||...++++-.+..-. .+.. . ...+++++|.+|+..| .+.+++++... +++.+.+++.+. ++
T Consensus 54 ~~iahG~~~~a~~~~~~~~~---~~~~-~-~~~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~-~~ 127 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTSW---VGDP-G-AVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTAT-TG 127 (142)
T ss_pred CcEecHHHHHHHHHHHHHHh---cCCC-c-ceEEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEE-EC
Confidence 34589999988887643221 1211 1 2247899999999853 78888888854 667888888888 46
Q ss_pred CCcEEEEEEEEEE
Q 031621 137 TGKIVAQGRHTKY 149 (156)
Q Consensus 137 ~g~~~a~a~~t~~ 149 (156)
+++.+..+++...
T Consensus 128 ~~~~~~~~~~~~~ 140 (142)
T PRK13693 128 GKKIFGRAIASAK 140 (142)
T ss_pred CcEEEEEEEEEEE
Confidence 6666776666543
No 66
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.80 E-value=0.0048 Score=48.04 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 64 ~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
..-.++||.+.+-+=.++. .+...+. +.-++...|++|.... +|.-..+.+|.|++...-+|+.+ ++|+++.
T Consensus 30 g~~~vFGGqvvaQAL~Aa~---~TV~~~r--~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~ai--Q~g~~If 102 (289)
T COG1946 30 GLRRVFGGQVVAQALVAAL---RTVPEDR--VVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAI--QHGKLIF 102 (289)
T ss_pred CCccccccchHHHHHHHHH---hhcCCCC--CcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEE--ECCEEEE
Confidence 3556888887766544322 2233222 4457778999999999 99999999999999999999999 5999999
Q ss_pred EEEEEEEEecC
Q 031621 143 QGRHTKYLAIS 153 (156)
Q Consensus 143 ~a~~t~~~~~~ 153 (156)
.++++|.+..+
T Consensus 103 ~~~ASF~~~e~ 113 (289)
T COG1946 103 SATASFQVPEE 113 (289)
T ss_pred EEEeeccCCCC
Confidence 99999988654
No 67
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=96.72 E-value=0.038 Score=42.61 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=62.4
Q ss_pred CcccHHHHHHHHHHHH-HHHHHHhCC----CceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCc
Q 031621 66 NFMHGGATATLVDLVG-SAAIFTVGA----PSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGK 139 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~-~~~~~~~~~----~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~ 139 (156)
-..|=..++.++|... ..++..... .....+++.+|.|.+|.+.+ .+..+++....+......+++++ |++|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~-d~~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIF-TRDGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEE-CCCCC
Confidence 4567789999999832 233333221 12346889999999997777 99999999998888889999999 79999
Q ss_pred EEEEEEEE
Q 031621 140 IVAQGRHT 147 (156)
Q Consensus 140 ~~a~a~~t 147 (156)
++|.+.-.
T Consensus 260 lvAs~~Qe 267 (271)
T TIGR00189 260 LIASTVQE 267 (271)
T ss_pred EEEEEEee
Confidence 99987654
No 68
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=96.54 E-value=0.18 Score=36.49 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=65.4
Q ss_pred EEEEEEEcCCCCc---CC---CCcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCC-eE-EEEEEEEE
Q 031621 50 RVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG-EI-EIEAKVLR 120 (156)
Q Consensus 50 ~v~~~~~~~~~~~---n~---~g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g-~i-~~~a~i~~ 120 (156)
+++.+-.++++.. ++ .+.+=|-.+.-.+-+++++.+.... .........-+.+|.+|+.+| .+ +++.++.+
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~ 130 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKR 130 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEE
Confidence 6777777776532 33 2346777777777777766664322 222223333499999999999 64 88888877
Q ss_pred e---CceEEEEEEEEEECCCCcEEEEEEEE
Q 031621 121 V---GKAVAVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 121 ~---g~~~~~v~~~i~~~~~g~~~a~a~~t 147 (156)
. .+....++++++ .+|+++|+++-.
T Consensus 131 ~~~~~~~~~~~~~~i~--v~g~~va~a~~~ 158 (169)
T TIGR01749 131 VINRRLVMGIADGEVL--VDGRLIYTASDL 158 (169)
T ss_pred EeecCCcEEEEEEEEE--ECCEEEEEEECC
Confidence 5 456889999999 599999996543
No 69
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=96.52 E-value=0.078 Score=37.52 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCce--eEEEEEEEEEecCCCCC-eEEEEEEEEEe---Cc--eEEEEEEEEEECCCC
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGAPSV--GVSVEINVSYLDAAFGG-EIEIEAKVLRV---GK--AVAVVSVELRKKDTG 138 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~~~~--~~t~~~~i~fl~p~~~g-~i~~~a~i~~~---g~--~~~~v~~~i~~~~~g 138 (156)
.+||-..++++.....-... ..... ......+++|++|+..| .|+++.+|... .+ ..++.++++.-...+
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~--~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFR--VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGED 135 (149)
T ss_pred EECHHHHHHHHHHHHHhccc--CCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCC
Confidence 48888888777664322211 11111 12234489999999999 99999999753 22 356666666654567
Q ss_pred cEEEEEEEEEE
Q 031621 139 KIVAQGRHTKY 149 (156)
Q Consensus 139 ~~~a~a~~t~~ 149 (156)
++++.++-.++
T Consensus 136 ~p~~~~~~~~~ 146 (149)
T cd03450 136 KPACVAEWISR 146 (149)
T ss_pred CceEEEEEEEe
Confidence 88887776544
No 70
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=96.46 E-value=0.035 Score=37.63 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEE
Q 031621 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSV 130 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~ 130 (156)
.-.+||-.+++++.....-.. +.........++++|++|+..| ++.+++++.......-.+.+
T Consensus 50 ~~ivhG~~~~a~~~~~~~~~~---~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v 113 (122)
T PF01575_consen 50 GPIVHGMLTLALASGLLGDWL---GPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRV 113 (122)
T ss_dssp SSB-BHHHHHHHHHHHHHHHH---STTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEE
T ss_pred CEEEccHHHHHHHHHHHHHhc---cCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEE
Confidence 456999999888765333322 2223467788999999999999 99999999864333333333
No 71
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=96.32 E-value=0.034 Score=38.02 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.3
Q ss_pred eeEEEEEEEEEecCCCCC-eEEEEEEEEEeC-------ceEEEEEEEEEECCCCcEEEE
Q 031621 93 VGVSVEINVSYLDAAFGG-EIEIEAKVLRVG-------KAVAVVSVELRKKDTGKIVAQ 143 (156)
Q Consensus 93 ~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g-------~~~~~v~~~i~~~~~g~~~a~ 143 (156)
..+-.+.++.|.+|++.| .+++.+++.... ...+.++.+++ |++|+++++
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~-~~~Ge~v~t 131 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYT-DQDGELVAT 131 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEE-CCCCCEEEe
Confidence 456678899999999999 999999886432 23356788899 699999985
No 72
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=96.31 E-value=0.2 Score=34.42 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCc-CC-CCcccHHHHHHHHHHHHHHHHHHhC---CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCc-
Q 031621 51 VICSMKVPPRLL-NA-GNFMHGGATATLVDLVGSAAIFTVG---APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGK- 123 (156)
Q Consensus 51 v~~~~~~~~~~~-n~-~g~lhGG~l~~l~D~~~~~~~~~~~---~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~- 123 (156)
+.+.++-..... .+ .+.+.|=.++-.+=+++...+.... .+...+..+++++|.+++... ++.++.++.....
T Consensus 24 ~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~ 103 (132)
T PF03756_consen 24 ARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRR 103 (132)
T ss_pred EEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEEecccc
Confidence 344444443332 33 3445555555555555544443322 234567779999999999877 8888877764333
Q ss_pred ----eEEEEEEEEEECCCCcEEEEEEEEEE
Q 031621 124 ----AVAVVSVELRKKDTGKIVAQGRHTKY 149 (156)
Q Consensus 124 ----~~~~v~~~i~~~~~g~~~a~a~~t~~ 149 (156)
+...++++++ ++|+++++++.++.
T Consensus 104 ~~~~~~~~~~v~~~--q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 104 GGRPRGLRFRVTVS--QGGRVVATASMTFT 131 (132)
T ss_pred CCccceEEEEEEEE--ECCEEEEEEEEEEE
Confidence 4678999999 59999999999875
No 73
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=96.30 E-value=0.26 Score=35.75 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=66.7
Q ss_pred EEEEEEEcCCCC---cCCC---CcccHHHHHHHHHHHHHHHHHHhC-CCceeEEEEEEEEEecCCCCC-e-EEEEEEEEE
Q 031621 50 RVICSMKVPPRL---LNAG---NFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG-E-IEIEAKVLR 120 (156)
Q Consensus 50 ~v~~~~~~~~~~---~n~~---g~lhGG~l~~l~D~~~~~~~~~~~-~~~~~~t~~~~i~fl~p~~~g-~-i~~~a~i~~ 120 (156)
+++.+..++++. .++. ..+-|-.+.-.+-+++++.+.... .........-+.+|.+++.+| . ++++.++.+
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~ 133 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKR 133 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEE
Confidence 588777777654 2333 336677777777777666664222 111223344589999999999 6 899988888
Q ss_pred e---CceEEEEEEEEEECCCCcEEEEEEE
Q 031621 121 V---GKAVAVVSVELRKKDTGKIVAQGRH 146 (156)
Q Consensus 121 ~---g~~~~~v~~~i~~~~~g~~~a~a~~ 146 (156)
. .+....++++++ .+|+++|+++.
T Consensus 134 ~~~~~~~~~~~~~~i~--v~g~~va~a~~ 160 (172)
T PRK05174 134 VINRKLVMGIADGRVL--VDGEEIYTAKD 160 (172)
T ss_pred EecCCCCEEEEEEEEE--ECCEEEEEEEe
Confidence 5 467889999999 48999999843
No 74
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.29 E-value=0.12 Score=35.23 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEE
Q 031621 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 144 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a 144 (156)
-.+||-..++++..+..- ...++........+++|.+|+..| +++++.+. .++ .+.+++++. ++|+++.++
T Consensus 45 ~iahG~~t~a~~~~~~~~---~~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~--~~g~~v~~g 116 (122)
T cd03448 45 PILHGLCTYGFAARAVLE---AFADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVV--ERDVVVLSN 116 (122)
T ss_pred ceehhHHHHHHHHHHHHH---HhcCCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEc--cCCcEEEEC
Confidence 448888887777654311 111222334556799999999999 99998874 344 567777776 366665443
No 75
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.20 E-value=0.16 Score=36.24 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=46.4
Q ss_pred EEEEEEEecCCCCC-eEEEEEEEEEeC----ceEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 97 VEINVSYLDAAFGG-EIEIEAKVLRVG----KAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 97 ~~~~i~fl~p~~~g-~i~~~a~i~~~g----~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
.--++.|.+|+..| +++++.+++... +....++.+.+ +++|+++..+.....+...
T Consensus 97 g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~-~~~g~~v~~~~~~~~~~~~ 157 (159)
T COG2030 97 GGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETV-NQEGELVLTLEATVLVLRR 157 (159)
T ss_pred cccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEE-ccCCcEEEEEEEeEeEeec
Confidence 34599999999999 999999998542 36778899999 6999999999988877644
No 76
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=95.98 E-value=0.056 Score=47.17 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=54.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCceeE-EEEEEEEEecCCCCC-eEEEEEEEEEeC------ceEEEEEEEEEECCCC
Q 031621 67 FMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFGG-EIEIEAKVLRVG------KAVAVVSVELRKKDTG 138 (156)
Q Consensus 67 ~lhGG~l~~l~D~~~~~~~~~~~~~~~~~-t~~~~i~fl~p~~~g-~i~~~a~i~~~g------~~~~~v~~~i~~~~~g 138 (156)
..||-..++++..... ......... ...-+++|++|+..| +|+++++|+..- ...+.++++++ +++|
T Consensus 575 Ia~G~l~~sl~~~l~~----~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~-nq~G 649 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVV-NQNG 649 (663)
T ss_pred eeCHHHHHHHHHHHhh----ccCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEE-cCCC
Confidence 5888888877744321 111111111 122489999999999 999999998541 22678999999 6999
Q ss_pred cEEEEEEEEEEE
Q 031621 139 KIVAQGRHTKYL 150 (156)
Q Consensus 139 ~~~a~a~~t~~~ 150 (156)
+++.++....++
T Consensus 650 ~~Vl~~~~~~lv 661 (663)
T TIGR02278 650 EPVATYDVLTLV 661 (663)
T ss_pred CEEEEEEEHHhc
Confidence 999999887654
No 77
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=95.94 E-value=0.24 Score=38.72 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=65.5
Q ss_pred CcccHHHHHHHHHHHH-HHHHHHhCC-----CceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCC
Q 031621 66 NFMHGGATATLVDLVG-SAAIFTVGA-----PSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTG 138 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~-~~~~~~~~~-----~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g 138 (156)
..+|-.+++-+.|.-. ..++...+. .....+++-+|.|.+|.+.+ .+..+.+....|....+.++++| +++|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~-~~~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFY-TQDG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEE-CCCC
Confidence 4588888887887543 333333321 23456788899999999888 99999999998888889999999 7999
Q ss_pred cEEEEEEEEEEEe
Q 031621 139 KIVAQGRHTKYLA 151 (156)
Q Consensus 139 ~~~a~a~~t~~~~ 151 (156)
+++|.+.-.-++.
T Consensus 271 ~LvAs~~Qegl~r 283 (286)
T PRK10526 271 VLVASTVQEGVMR 283 (286)
T ss_pred CEEEEEEeeEEEE
Confidence 9999988765554
No 78
>PLN02864 enoyl-CoA hydratase
Probab=94.72 E-value=0.4 Score=38.09 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred eEEEEEEEEEecCCCCC-eEEEEEEEEEe---Cc-eEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031621 94 GVSVEINVSYLDAAFGG-EIEIEAKVLRV---GK-AVAVVSVELRKKDTGKIVAQGRHTKYLAIS 153 (156)
Q Consensus 94 ~~t~~~~i~fl~p~~~g-~i~~~a~i~~~---g~-~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~ 153 (156)
.+=.+-++.|.||++.+ .+.+++++... |+ .++.++.++.+.++|+++++...++++...
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 45556689999999999 99999998754 33 235678888844699999999999888643
No 79
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=94.54 E-value=0.16 Score=44.49 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=42.4
Q ss_pred EEEEecCCCCC-eEEEEEEEEEeC------ceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 100 NVSYLDAAFGG-EIEIEAKVLRVG------KAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 100 ~i~fl~p~~~g-~i~~~a~i~~~g------~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
+++|.+|+..| +|+++.+|...- ...+.++++++ +++|+++.++....++
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq~G~~V~~~~~~~lv 673 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVT-NQDGELVATYDILTLV 673 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEE-ECCCCEEEEEEEHHhc
Confidence 79999999999 999999998652 24688999999 5999999998877654
No 80
>PLN02868 acyl-CoA thioesterase family protein
Probab=94.51 E-value=0.34 Score=39.81 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=62.0
Q ss_pred CcccHHHHHHHHHHHHHHHHH-HhC-CC--ceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcE
Q 031621 66 NFMHGGATATLVDLVGSAAIF-TVG-AP--SVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKI 140 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~~-~~~-~~--~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~ 140 (156)
..+|-..++.+.|......+. ... .. ....+.+-+|.|.+|...+ .+..+.+....+......++++| +++|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~-~~~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMF-NRKGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEE-CCCCCE
Confidence 457888999999976444433 222 11 1246777899999999888 99999999999888888999999 799999
Q ss_pred EEEEEE
Q 031621 141 VAQGRH 146 (156)
Q Consensus 141 ~a~a~~ 146 (156)
+|.+.-
T Consensus 404 vAs~~Q 409 (413)
T PLN02868 404 VVSLTQ 409 (413)
T ss_pred EEEEEe
Confidence 998753
No 81
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=94.48 E-value=0.73 Score=35.48 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=67.0
Q ss_pred CCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEE-eCceE
Q 031621 48 PGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLR-VGKAV 125 (156)
Q Consensus 48 ~~~v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~-~g~~~ 125 (156)
+......+.++.......|.++...+..|+-++.-.-... .....++.|+|.+.+..| .+.+...+.. .+...
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~-----~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~ 237 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE-----KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDG 237 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC-----CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc-----cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCc
Confidence 3356788899999999999999999999998765443321 124578999999999999 9998888754 34445
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEE
Q 031621 126 AVVSVELRKKDTGKIVAQGRHTKY 149 (156)
Q Consensus 126 ~~v~~~i~~~~~g~~~a~a~~t~~ 149 (156)
....-.+. .++|+.+|++...|.
T Consensus 238 ~~~~h~i~-~~~g~~~~~~~~~W~ 260 (261)
T PF01643_consen 238 LSTLHEIR-NEDGEEVARARTEWQ 260 (261)
T ss_dssp EEEEEEEE-CT-TCEEEEEEEEEE
T ss_pred eEEEEEEE-cCCCceEEEEEEEEc
Confidence 56677788 456999999998764
No 82
>PLN02864 enoyl-CoA hydratase
Probab=94.13 E-value=1.3 Score=35.10 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=54.7
Q ss_pred EEEEcCCCCcCC---------CCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeC
Q 031621 53 CSMKVPPRLLNA---------GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVG 122 (156)
Q Consensus 53 ~~~~~~~~~~n~---------~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g 122 (156)
++...+|-|.++ .-.+||-+.++++-.+.. ............+++++|.+|+..| ++.++.+. .+
T Consensus 206 lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~---~~~~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~~ 280 (310)
T PLN02864 206 LSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVI---KCFCNGDPTAVKTISGRFLLHVYPGETLVTEMWL--EG 280 (310)
T ss_pred hhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHH---hhhcCCCCceEEEEEEEEcCCccCCCEEEEEEEe--CC
Confidence 444556666652 234888777776555321 1112111223457899999999999 88766543 33
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEEEEE
Q 031621 123 KAVAVVSVELRKKDTGKIVAQGRHTKY 149 (156)
Q Consensus 123 ~~~~~v~~~i~~~~~g~~~a~a~~t~~ 149 (156)
..+.+++.+. ++|+++..+..+..
T Consensus 281 -~~v~~~~~~~--~~g~~vl~G~a~~~ 304 (310)
T PLN02864 281 -LRVIYQTKVK--ERNKAVLSGYVDLR 304 (310)
T ss_pred -CEEEEEEEEe--cCCeEEEEEEEEEe
Confidence 4466677764 67788888877654
No 83
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=94.00 E-value=0.62 Score=32.32 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=54.5
Q ss_pred CcccHHHHHHHHHHHHHHHH-HHhC--CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEE
Q 031621 66 NFMHGGATATLVDLVGSAAI-FTVG--APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIV 141 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~-~~~~--~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~ 141 (156)
-.+|--+++-+.|...-..+ ..++ .....++++=++-|.||.+.+ .+....+--........+++++++.++|+++
T Consensus 44 ~~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lv 123 (131)
T PF02551_consen 44 PRIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELV 123 (131)
T ss_dssp HCCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEE
T ss_pred hhHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEE
Confidence 34677777777776433333 2232 233456888899999999999 8887777777777777889999955999999
Q ss_pred EEEE
Q 031621 142 AQGR 145 (156)
Q Consensus 142 a~a~ 145 (156)
|.+.
T Consensus 124 as~~ 127 (131)
T PF02551_consen 124 ASVV 127 (131)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9764
No 84
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=93.57 E-value=0.85 Score=35.78 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=64.8
Q ss_pred CcccHHHHHHHHHHHHHHHH-HHhC-----CCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCC
Q 031621 66 NFMHGGATATLVDLVGSAAI-FTVG-----APSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTG 138 (156)
Q Consensus 66 g~lhGG~l~~l~D~~~~~~~-~~~~-----~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g 138 (156)
-.+|-..++-+.|......+ ..++ +..-+++.+=++-|+||.+.+ .+....+.-........++++++ +++|
T Consensus 192 ~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf-~r~G 270 (289)
T COG1946 192 PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLF-DRDG 270 (289)
T ss_pred HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEE-cCCC
Confidence 45777777777776544333 2233 244567788899999999988 99998888888888889999999 6999
Q ss_pred cEEEEEEEEEEEe
Q 031621 139 KIVAQGRHTKYLA 151 (156)
Q Consensus 139 ~~~a~a~~t~~~~ 151 (156)
+++|...-.-.+.
T Consensus 271 ~LiA~~~QEG~~r 283 (289)
T COG1946 271 QLIASVVQEGLIR 283 (289)
T ss_pred CEEEEEeeeEEEe
Confidence 9999876665544
No 85
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=91.22 E-value=5.5 Score=30.51 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=62.0
Q ss_pred CEEEEEEEcCCCCcC--CCCcccHHHHHHHHHHHHHHH---HHH-hCCCceeEEEEE-EEEEec-CCCCC-eEEEEEEEE
Q 031621 49 GRVICSMKVPPRLLN--AGNFMHGGATATLVDLVGSAA---IFT-VGAPSVGVSVEI-NVSYLD-AAFGG-EIEIEAKVL 119 (156)
Q Consensus 49 ~~v~~~~~~~~~~~n--~~g~lhGG~l~~l~D~~~~~~---~~~-~~~~~~~~t~~~-~i~fl~-p~~~g-~i~~~a~i~ 119 (156)
+.+..++.+.+.... ..-.+|.+ ++|.++-.. +.. .......+...+ ++.+.+ |.+.+ .+.+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P~----llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHPA----LLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLV 257 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-HH----HHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECHH----HHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEe
Confidence 556666666654432 23445664 556655522 211 122333344433 777774 55666 999999998
Q ss_pred EeCceEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031621 120 RVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 150 (156)
Q Consensus 120 ~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~ 150 (156)
..+......++.++ |++|+++++.++..+.
T Consensus 258 ~~~~~~~~~dv~v~-d~~G~~~~~~~gl~~~ 287 (295)
T PF14765_consen 258 KSDDDTITGDVTVF-DEDGRVVAELEGLTFR 287 (295)
T ss_dssp STTTTEEEEEEEEE-ETTSBEEEEEEEEEEE
T ss_pred cccceEEEEEEEEE-CCCCCEEEEEccEEEE
Confidence 88999999999999 6999999998887554
No 86
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=89.59 E-value=5.1 Score=30.61 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=53.3
Q ss_pred eeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031621 93 VGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 154 (156)
Q Consensus 93 ~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~~~~ 154 (156)
..+.....+++.||+..| .++++.+.....+..+.-+.++. + .|..+....+.|+..++.
T Consensus 55 ~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~-~-~gg~Lie~~a~wilmn~d 115 (250)
T COG3884 55 LWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD-G-RGGGLIEIEAFWILMNRD 115 (250)
T ss_pred eEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEe-c-CCCcEEEEEEEEEEEccc
Confidence 346668899999999999 99999999999999999999999 4 777888899999988764
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=89.42 E-value=3 Score=31.84 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-CCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCceEEEE
Q 031621 51 VICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKAVAVV 128 (156)
Q Consensus 51 v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~-~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v 128 (156)
..-.++++-.....+|.++...+..++....+.-.... ++ ..+++.|.+|+..| .|++..++-..+++-.+
T Consensus 153 ~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p------~r~~l~y~keva~G~~iti~~e~~~~~s~~~f- 225 (250)
T COG3884 153 EIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGP------LRLTLEYVKEVAPGEKITIVYEVHPLESKHQF- 225 (250)
T ss_pred ccccceeEEEeeccccccccceehHHHHHHHhhhhHhhccc------ceeEEEEEcccCCCCeEEEEEEEcccCceeee-
Confidence 34567777777888999999999999998877665543 33 56799999999999 99999998877665432
Q ss_pred EEEEEECCCCcEEEEEEE
Q 031621 129 SVELRKKDTGKIVAQGRH 146 (156)
Q Consensus 129 ~~~i~~~~~g~~~a~a~~ 146 (156)
. .||.+.+.+-.
T Consensus 226 ----~--~d~~v~~lt~i 237 (250)
T COG3884 226 ----T--SDGQVNALTYI 237 (250)
T ss_pred ----c--CCcceEEEEEE
Confidence 2 35555554433
No 88
>PLN02370 acyl-ACP thioesterase
Probab=89.38 E-value=7.3 Score=32.38 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=65.8
Q ss_pred EEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEE-----EeCce
Q 031621 51 VICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVL-----RVGKA 124 (156)
Q Consensus 51 v~~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~-----~~g~~ 124 (156)
....+.++...++.+|.++...+..|+-++.-.-... . -...+++|+|.+.+..| .|.+..... ..+..
T Consensus 302 ~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~---~--~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~ 376 (419)
T PLN02370 302 IRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIME---S--HELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTA 376 (419)
T ss_pred eeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhh---c--ceEEEEEEEEcccCCCCCEEEEEEeecccccccccCC
Confidence 4455888999999999999999999887754433221 1 14578999999999999 888776542 11111
Q ss_pred E-EEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 125 V-AVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 125 ~-~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
. ..+...+. .++|+.+++++..|.-.
T Consensus 377 ~~~~~~h~~~-~~dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 377 GDVECQHLLR-LEDGAEIVRGRTEWRPK 403 (419)
T ss_pred CcceEEEEEE-cCCCeEEEEEEEEEEEC
Confidence 1 12333444 58999999999987644
No 89
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=88.22 E-value=3.6 Score=32.36 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=61.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHH-HhC---CCceeEEEEEEEEEecC-CCCC-eEEEEEEEEEeCceEEEEEEEEEECCCC
Q 031621 65 GNFMHGGATATLVDLVGSAAIF-TVG---APSVGVSVEINVSYLDA-AFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTG 138 (156)
Q Consensus 65 ~g~lhGG~l~~l~D~~~~~~~~-~~~---~~~~~~t~~~~i~fl~p-~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g 138 (156)
.-.+|--+++.+.|...-.++. ... .....++.+=+|-|.++ .+.. .+.-++.....+....++++++| .++|
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw-~rdG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLW-NRDG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEE-ccCC
Confidence 5567888888899987555543 222 12234555668999998 6888 89999999999999999999999 5999
Q ss_pred cEEEEE
Q 031621 139 KIVAQG 144 (156)
Q Consensus 139 ~~~a~a 144 (156)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 998865
No 90
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=84.92 E-value=13 Score=37.91 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred EEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 100 NVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 100 ~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
++...+|...| ...+..++.+...+.+..++.++ |++|+++++..+...++
T Consensus 2522 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~-~~~g~~~~~~~~~~~~~ 2573 (2582)
T TIGR02813 2522 EFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELY-HQDGRLSSEMKSAKVTI 2573 (2582)
T ss_pred eEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEE-CCCCcEEEEEeCCeEEE
Confidence 67778888888 99999999999999999999999 79999999877765554
No 91
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=68.67 E-value=15 Score=25.99 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=58.8
Q ss_pred EEEEecCCEEEEEEEcCCC---CcCCCCcccHHHHHHHHHHHHHHHHH--HhCCCce----eEEE---EEEEEEecCCCC
Q 031621 42 RVDLSEPGRVICSMKVPPR---LLNAGNFMHGGATATLVDLVGSAAIF--TVGAPSV----GVSV---EINVSYLDAAFG 109 (156)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~---~~n~~g~lhGG~l~~l~D~~~~~~~~--~~~~~~~----~~t~---~~~i~fl~p~~~ 109 (156)
+++.++++.++++..+.|. ...+.|.+-+=+-.-++.++.+.... .+..+.+ .+.. ++++ +....+.
T Consensus 27 ~VvtwdDd~~rc~atvsp~~a~~l~~dg~Lpa~~gIElmAQAv~vh~g~l~~rq~~ps~r~GfLlg~Rklea-ha~~l~~ 105 (161)
T COG4706 27 DVVTWDDDSARCRATVSPSGAPFLDPDGNLPAWFGIELMAQAVGVHSGWLRHRQGKPSIRLGFLLGARKLEA-HAGILPA 105 (161)
T ss_pred eeeeecCCeEEEEeEeCCCCCCccCcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeeeeeeee-eccccCC
Confidence 5788999999999999877 44678888888888888888766653 2222211 1111 1111 1122223
Q ss_pred C--eEEEEEEEEEeCceEEEEEEEEEECCCCcEEE
Q 031621 110 G--EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 110 g--~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a 142 (156)
| .+..+.+.++..+....++|+|. .++...+
T Consensus 106 ~q~ll~t~~e~iqddgg~g~f~csir--~d~~~~~ 138 (161)
T COG4706 106 GQTLLITVKELIQDDGGFGSFECSIR--NDGEATG 138 (161)
T ss_pred ccchHHHHHHHhccCCCceEEEEEEc--cCchhhc
Confidence 3 23334445565666778899998 3555444
No 92
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=61.31 E-value=5.9 Score=22.19 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=13.9
Q ss_pred CchHHHHHHHHcCCC
Q 031621 1 MELESVKRYLEKGGG 15 (156)
Q Consensus 1 ~~~e~~~~~l~~~~~ 15 (156)
||.|++++||+....
T Consensus 1 MS~~~l~~Fl~~~~~ 15 (49)
T PF07862_consen 1 MSIESLKAFLEKVKS 15 (49)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999999984
No 93
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=56.62 E-value=8.7 Score=19.54 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=8.8
Q ss_pred CchHHHHHHHHc
Q 031621 1 MELESVKRYLEK 12 (156)
Q Consensus 1 ~~~e~~~~~l~~ 12 (156)
++.|++++||+.
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 478999999974
No 94
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=50.79 E-value=80 Score=21.74 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=34.3
Q ss_pred EEEEecCCC--CCeEEEEEEEEEeCceEE---EEEEEEEECCCCcEEEEEEE
Q 031621 100 NVSYLDAAF--GGEIEIEAKVLRVGKAVA---VVSVELRKKDTGKIVAQGRH 146 (156)
Q Consensus 100 ~i~fl~p~~--~g~i~~~a~i~~~g~~~~---~v~~~i~~~~~g~~~a~a~~ 146 (156)
+-..+++.. .+.+.+.+++...+.+.. .++++++ |.+|+++++=..
T Consensus 56 ~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~-D~~g~~l~~r~~ 106 (149)
T PF11906_consen 56 ESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLL-DAQGQPLARRVF 106 (149)
T ss_pred eeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEE-CCCCCEEEEEEE
Confidence 335666666 338999999998776654 6999999 799999875443
No 95
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=50.54 E-value=10 Score=18.85 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.2
Q ss_pred HHHHHHHHcCC
Q 031621 4 ESVKRYLEKGG 14 (156)
Q Consensus 4 e~~~~~l~~~~ 14 (156)
-++|+||++-.
T Consensus 6 ~SLqRFLeKRK 16 (27)
T PF09425_consen 6 ASLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHH
Confidence 47899999765
No 96
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.63 E-value=71 Score=22.37 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.2
Q ss_pred CC-eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEEE
Q 031621 109 GG-EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTK 148 (156)
Q Consensus 109 ~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~ 148 (156)
.| .+.+++.+-|.+.-...+.+.+.+-++|+++......+
T Consensus 79 ~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 79 LGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred cCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 35 77888999999999999999999888899988766554
No 97
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=42.66 E-value=74 Score=19.05 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=25.3
Q ss_pred eEEEEEEEEEeCceEEEEEEEEEECCCCcEEEEEEEE
Q 031621 111 EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 111 ~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t 147 (156)
.-+..+...-.-.....+++++. +++|++++....+
T Consensus 29 r~Rt~S~k~~~~~~~G~WrV~V~-~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 29 RWRTWSSKQNFPDQPGDWRVEVV-DEDGQVLGSLRFS 64 (66)
T ss_pred CEEEEEEeecCCCCCcCEEEEEE-cCCCCEEEEEEEE
Confidence 44444444444456668999999 7999999976654
No 98
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=37.29 E-value=59 Score=20.50 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=22.7
Q ss_pred EEEEeCceEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031621 117 KVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 151 (156)
Q Consensus 117 ~i~~~g~~~~~v~~~i~~~~~g~~~a~a~~t~~~~ 151 (156)
.+..-|....++.+++. |++|+++.-...+|.+.
T Consensus 11 ~~~Adg~d~~~i~v~v~-D~~Gnpv~~~~V~f~~~ 44 (92)
T smart00634 11 TAVANGSDAITLTATVT-DANGNPVAGQEVTFTTP 44 (92)
T ss_pred cEEEcCcccEEEEEEEE-CCCCCCcCCCEEEEEEC
Confidence 34455667777778887 67777777666666554
No 99
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=35.15 E-value=19 Score=26.98 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=37.3
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCC
Q 031621 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG 109 (156)
Q Consensus 53 ~~~~~~~~~~n~~g~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~ 109 (156)
+-+..+|+..-..|+-|||.+.-+|+.+ .+.+.+..++++++.+.-+.|.-.
T Consensus 64 llw~~~P~lvIE~Gs~~GGSal~fA~~m-----~s~Gq~~kvl~vdIdi~~~~p~a~ 115 (237)
T COG3510 64 LLWELQPSLVIEFGSRHGGSALFFANMM-----ISIGQPFKVLGVDIDIKPLDPAAR 115 (237)
T ss_pred HHHhcCCceeEeeccccCchhhhhhHhH-----HhcCCCceEEEEecccCcCChhhh
Confidence 4456677777788999999999988842 233345567888888887766643
No 100
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=34.30 E-value=1.1e+02 Score=18.34 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.8
Q ss_pred ceEEEEEEEEEECCCCcEEEEEEE
Q 031621 123 KAVAVVSVELRKKDTGKIVAQGRH 146 (156)
Q Consensus 123 ~~~~~v~~~i~~~~~g~~~a~a~~ 146 (156)
.+...+.+.+.++.+|++.|...-
T Consensus 30 ~~~~~vtV~V~~~~~G~L~A~v~y 53 (64)
T TIGR03786 30 TTVHTVTVTVTDDEQGKLVATVIY 53 (64)
T ss_pred CCEEEEEEEEEECCCCcEEEEEEE
Confidence 445678899997778999876543
No 101
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=31.18 E-value=1.7e+02 Score=19.81 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEEEEecCCCCCeEEEEEEEEEeCceEEEEEEEEEECCCCcE
Q 031621 97 VEINVSYLDAAFGGEIEIEAKVLRVGKAVAVVSVELRKKDTGKI 140 (156)
Q Consensus 97 ~~~~i~fl~p~~~g~i~~~a~i~~~g~~~~~v~~~i~~~~~g~~ 140 (156)
+++.++=|.|-. .+++.+++....+....-.+.+..|++|.+
T Consensus 5 ~~I~v~GL~p~~--~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 5 VDIRVSGLPPGQ--EVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp -EEEEES--TT---EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred eEEEEeCCCCCC--EEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 355666666655 799999999887878888888888888876
No 102
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=30.69 E-value=1.5e+02 Score=18.99 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEEEEecCCCCC-eEEEEEEEEEeCceEEEEEEEEEECCCCc
Q 031621 99 INVSYLDAAFGG-EIEIEAKVLRVGKAVAVVSVELRKKDTGK 139 (156)
Q Consensus 99 ~~i~fl~p~~~g-~i~~~a~i~~~g~~~~~v~~~i~~~~~g~ 139 (156)
.+++|-.=-..| ...+.+++...|.. ..++++++|-..++
T Consensus 63 ~~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv~~~~ 103 (105)
T PF04052_consen 63 SQVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDVASGK 103 (105)
T ss_dssp GG--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-----
T ss_pred CCcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEeccccc
Confidence 345554434567 89999999999988 89999999644444
No 103
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=28.16 E-value=27 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=12.0
Q ss_pred cccccCchhhhhhe
Q 031621 23 STMEEMPTKFFERF 36 (156)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (156)
..+.+||.+||+..
T Consensus 31 G~l~~WP~GFFDq~ 44 (52)
T PF12476_consen 31 GRLSNWPEGFFDQW 44 (52)
T ss_pred CCCccCCCchhhHH
Confidence 56899999999875
No 104
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.54 E-value=2.1e+02 Score=19.84 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=33.6
Q ss_pred CceeEEEEEEEEEecCCCCC--eEEEEEEEEEeCceEEEEEEEE
Q 031621 91 PSVGVSVEINVSYLDAAFGG--EIEIEAKVLRVGKAVAVVSVEL 132 (156)
Q Consensus 91 ~~~~~t~~~~i~fl~p~~~g--~i~~~a~i~~~g~~~~~v~~~i 132 (156)
+...++-+...+-..++..| .|.+++...+.++....+.+++
T Consensus 77 G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l~~~~~~l 120 (139)
T PF10029_consen 77 GKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGRELVRIPFPL 120 (139)
T ss_pred CccEEEEEccccccCccCCCcEEEEEEEEEEECCcEEEEEEEEe
Confidence 33445667778888999877 8889999888888888888888
No 105
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=27.33 E-value=55 Score=25.47 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=10.9
Q ss_pred CchHHHHHHHHcCC
Q 031621 1 MELESVKRYLEKGG 14 (156)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (156)
|.-++++.||+.+=
T Consensus 1 M~~~~i~~f~~ryf 14 (260)
T PF11079_consen 1 MQQQQIHQFLERYF 14 (260)
T ss_pred CCHHHHHHHHHHHH
Confidence 67788888888765
No 106
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=26.89 E-value=1.3e+02 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=18.0
Q ss_pred eEEEEEEEEEECCCCcEEEEEEEE
Q 031621 124 AVAVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 124 ~~~~v~~~i~~~~~g~~~a~a~~t 147 (156)
+.-.+.+++.+|.+|++++.++..
T Consensus 23 SnkhiyaQvidd~~g~tlasaST~ 46 (109)
T CHL00139 23 SNKHIYAQIIDDTNGKTLVACSTL 46 (109)
T ss_pred eCCeEEEEEEECCCCCEEEEEecC
Confidence 344677888888888999888754
No 107
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=26.78 E-value=2.4e+02 Score=20.18 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=23.8
Q ss_pred eeEEEEEEEEEecCCCCCeEEEEEEEEE---eCce----EEEEEEEEEECCCCcEE
Q 031621 93 VGVSVEINVSYLDAAFGGEIEIEAKVLR---VGKA----VAVVSVELRKKDTGKIV 141 (156)
Q Consensus 93 ~~~t~~~~i~fl~p~~~g~i~~~a~i~~---~g~~----~~~v~~~i~~~~~g~~~ 141 (156)
.....+++-+|.||+.+-....+..+.. .++. .+...++++|++.|+-.
T Consensus 95 dilI~~~~S~Frr~i~~~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~~~ 150 (157)
T PF10862_consen 95 DILITSFKSRFRRPINPRHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGRAS 150 (157)
T ss_dssp HEEEEEE-EEE-S---TTSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----EEE
T ss_pred ceeEeechhhhhcccCcceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCccc
Confidence 3577899999999999655555544432 2332 34578999965555533
No 108
>PRK05423 hypothetical protein; Provisional
Probab=26.61 E-value=23 Score=23.13 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=18.0
Q ss_pred CchHHHHHHHHcCCCCCCCc
Q 031621 1 MELESVKRYLEKGGGGDDDK 20 (156)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~ 20 (156)
|+.|+++..++.+..+|++.
T Consensus 56 Ms~e~i~~II~nMr~DYEdR 75 (104)
T PRK05423 56 MSIEEIQGIIANMKSDYEDR 75 (104)
T ss_pred CCHHHHHHHHHHHHhhHHHh
Confidence 89999999999999888874
No 109
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=24.22 E-value=56 Score=18.78 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.8
Q ss_pred CchHHHHHHHHcCCC
Q 031621 1 MELESVKRYLEKGGG 15 (156)
Q Consensus 1 ~~~e~~~~~l~~~~~ 15 (156)
|+.++++++|+..+-
T Consensus 2 msf~Evk~lLk~~NI 16 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI 16 (51)
T ss_dssp BEHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHcc
Confidence 788999999999984
No 110
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=3.6e+02 Score=21.06 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=58.0
Q ss_pred cCCEEEEEEEcCCCCcCCCC-cccHHHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEecCCCCC-eEEEEEEEEEeCce
Q 031621 47 EPGRVICSMKVPPRLLNAGN-FMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-EIEIEAKVLRVGKA 124 (156)
Q Consensus 47 ~~~~v~~~~~~~~~~~n~~g-~lhGG~l~~l~D~~~~~~~~~~~~~~~~~t~~~~i~fl~p~~~g-~i~~~a~i~~~g~~ 124 (156)
..+++....+.--..-|..| .+||-.+++++=.++--.. +. ....++..-|+|+-.+ ++++.++....|+-
T Consensus 182 N~HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~----pq---~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~ 254 (273)
T COG3777 182 NGHRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFL----PQ---PIRRFRFRNLSPAFPNETLTICGSLSGSGGA 254 (273)
T ss_pred CceeeeccCcceeeccCCCCceecchHHHHHHHHHhhhhc----cc---cchheeccccccccCCCCeeEeeEecCCCce
Confidence 44455555555555556544 4899999998876433221 21 2567788889999999 99999999887754
Q ss_pred EEEEEEEEEECCCCcEEEEEEEE
Q 031621 125 VAVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 125 ~~~v~~~i~~~~~g~~~a~a~~t 147 (156)
-.. .. +.++.++.+|+..
T Consensus 255 ~~w----~~-~~~~pv~mrarV~ 272 (273)
T COG3777 255 ELW----TI-RGDGPVAMRARVF 272 (273)
T ss_pred EEE----Ee-cCCcchhheeeec
Confidence 322 22 3566677777654
No 111
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=23.44 E-value=1.6e+02 Score=16.99 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=14.8
Q ss_pred EEEEEEEEe-CceEEEEEEEEEECCCCcEEE
Q 031621 113 EIEAKVLRV-GKAVAVVSVELRKKDTGKIVA 142 (156)
Q Consensus 113 ~~~a~i~~~-g~~~~~v~~~i~~~~~g~~~a 142 (156)
.+.++|.+. .+..-.+.+.+. |.+|.+-+
T Consensus 2 ~v~G~V~~~~~~~~~~~~~~l~-D~tg~i~~ 31 (75)
T PF01336_consen 2 TVEGRVTSIRRSGGKIVFFTLE-DGTGSIQV 31 (75)
T ss_dssp EEEEEEEEEEEEETTEEEEEEE-ETTEEEEE
T ss_pred EEEEEEEEEEcCCCCEEEEEEE-ECCccEEE
Confidence 455666555 333334556666 45554433
No 112
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.35 E-value=64 Score=16.88 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.4
Q ss_pred chHHHHHHHHcCCCC
Q 031621 2 ELESVKRYLEKGGGG 16 (156)
Q Consensus 2 ~~e~~~~~l~~~~~~ 16 (156)
+-+++++||+..+-.
T Consensus 5 s~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIP 19 (38)
T ss_pred CHHHHHHHHHHcCCC
Confidence 568999999999853
No 113
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=22.91 E-value=2.2e+02 Score=24.80 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.0
Q ss_pred CchHHHHHHHHcCCC
Q 031621 1 MELESVKRYLEKGGG 15 (156)
Q Consensus 1 ~~~e~~~~~l~~~~~ 15 (156)
||.|+.++-|+...+
T Consensus 61 ms~ee~~~~l~~~~p 75 (567)
T PRK04156 61 LSLEEQRERLEELAP 75 (567)
T ss_pred CCHHHHHHHHHHhCh
Confidence 788888888888554
No 114
>KOG4048 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=1.5e+02 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=15.4
Q ss_pred chHHHHHHHHcCCCCCCCccccccccC
Q 031621 2 ELESVKRYLEKGGGGDDDKNKSTMEEM 28 (156)
Q Consensus 2 ~~e~~~~~l~~~~~~~~~~~~~~~~~~ 28 (156)
+=|++.+||+.+. |.+.|.+.
T Consensus 116 sdeEVnkWL~fyE------M~ApL~c~ 136 (201)
T KOG4048|consen 116 SDEEVNKWLHFYE------MKAPLVCL 136 (201)
T ss_pred CHHHHHHHHhHee------ccCceeee
Confidence 3478999999998 55555554
No 115
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=1.9e+02 Score=19.90 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.7
Q ss_pred EEEEEecCCCCC-eEEEEEEEEEeCceEE
Q 031621 99 INVSYLDAAFGG-EIEIEAKVLRVGKAVA 126 (156)
Q Consensus 99 ~~i~fl~p~~~g-~i~~~a~i~~~g~~~~ 126 (156)
+++.|.+|.+.| .+++.++-+..|...-
T Consensus 25 ~~~~~~KpGKg~a~vrvk~k~l~tG~~~e 53 (131)
T COG0231 25 VEISHVKPGKGGAFVRVKLKNLFTGKKVE 53 (131)
T ss_pred EEEEEccCCCCCcEEEEEEEEccCCCEEE
Confidence 355999999999 8888888888877663
No 116
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.41 E-value=2.3e+02 Score=17.97 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=24.8
Q ss_pred EEEEecCCCCCeEEEEEEEEEeCceE-EEEEEEEEECCCCcEEEEEEEE
Q 031621 100 NVSYLDAAFGGEIEIEAKVLRVGKAV-AVVSVELRKKDTGKIVAQGRHT 147 (156)
Q Consensus 100 ~i~fl~p~~~g~i~~~a~i~~~g~~~-~~v~~~i~~~~~g~~~a~a~~t 147 (156)
+|.-..|.+...|.-.-+|....+-. ..+.+++. |.+|+++++...+
T Consensus 2 ~I~V~~P~pg~~V~sp~~V~G~A~~FEgtv~~rv~-D~~g~vl~e~~~~ 49 (88)
T PF10648_consen 2 NIWVTAPAPGDTVSSPVKVSGKARVFEGTVNIRVR-DGHGEVLAEGFVT 49 (88)
T ss_pred ceEEcCCCCcCCcCCCEEEEEEEEEeeeEEEEEEE-cCCCcEEEEeeEE
Confidence 35555666532333322222222211 25788888 7899998655544
No 117
>PF07930 DAP_B: D-aminopeptidase, domain B; InterPro: IPR012856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain B is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain A, the catalytic domain, by an eight-residue sequence, and also interacts with both domains A and C via non-covalent bonds. Domain B probably functions in maintaining domain C in a good position to interact with the catalytic domain []. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=20.61 E-value=51 Score=21.16 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=26.2
Q ss_pred ccccCchhhhhheeecCeEEEEecCCEEEEEEEcCCCCcCC
Q 031621 24 TMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNA 64 (156)
Q Consensus 24 ~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~n~ 64 (156)
..+.|+..+++.-..+-+++.....|++.+++-..|.+.+.
T Consensus 9 a~~~W~G~wLD~etgL~l~i~~~~~G~~~~rya~~pE~l~~ 49 (88)
T PF07930_consen 9 ASPAWFGSWLDPETGLVLRIEDAGQGRVKLRYATSPEMLDL 49 (88)
T ss_dssp --GGG-EEEE-TTT--EEEEEE-STTEEEEE-SSS-EEEEE
T ss_pred CCCCcceeeEcCCCceEEEeecCCCceEEEEecCCCceeec
Confidence 34778888888877777788888889999999888887663
Done!