BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031623
         (156 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5B7I2|MEND_EDWI9 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
           synthase OS=Edwardsiella ictaluri (strain 93-146)
           GN=menD PE=3 SV=1
          Length = 559

 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 118 SLDTRTPASYPLFKKDGEDDDSDNSNGASRGNWWQG 153
           +L    P + PL+   GEDDD      A+ G WWQG
Sbjct: 163 ALHINCPFADPLY---GEDDDGQQGWSAALGCWWQG 195


>sp|Q8IXN7|RIMKA_HUMAN N-acetylaspartyl-glutamate synthetase A OS=Homo sapiens GN=RIMKLA
           PE=2 SV=2
          Length = 391

 Score = 30.8 bits (68), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 76  HTESASCNIPNKDKSYI--------FKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASY 127
           H E   C + N+ +S +        F+E       +  +  YGG + +S  +D   P  Y
Sbjct: 90  HLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGY 149

Query: 128 PLFKK 132
           P+  K
Sbjct: 150 PVVVK 154


>sp|Q6PFX8|RIMKA_MOUSE N-acetylaspartyl-glutamate synthetase A OS=Mus musculus GN=Rimkla
           PE=1 SV=1
          Length = 380

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 76  HTESASCNIPNKDKSYI--------FKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASY 127
           H E   C + N+ +S +        F+E       +  +  YGG + +S  +D   P  Y
Sbjct: 90  HLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGY 149

Query: 128 PLFKK 132
           P+  K
Sbjct: 150 PVVVK 154


>sp|Q66HZ2|RIMKB_DANRE Beta-citryl-glutamate synthase B OS=Danio rerio GN=rimklb PE=2 SV=1
          Length = 405

 Score = 30.4 bits (67), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 76  HTESASCNIPNK--------DKSYIFKEERAEPCHLSSSLYYGGQDIYSHSLDTRTPASY 127
           H E   C + N+        +K + F+E       L  +  YGG D +   +D   P  Y
Sbjct: 90  HLEKMGCRLVNRPQAILNCVNKFWTFQELAGHGVPLPDTYSYGGHDNFRKMIDEAEPLGY 149

Query: 128 PLFKKDGE 135
           P+  K+  
Sbjct: 150 PVVVKNAR 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,884,503
Number of Sequences: 539616
Number of extensions: 2767259
Number of successful extensions: 5504
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5464
Number of HSP's gapped (non-prelim): 56
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)