Query 031623
Match_columns 156
No_of_seqs 52 out of 54
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 21.7 29 0.00098 20.1 0.7 11 29-39 4-14 (29)
2 2bn5_B U1 small nuclear ribonu 17.5 58 0.002 18.2 1.4 13 35-47 9-22 (26)
3 3fbi_A Mediator of RNA polymer 12.8 61 0.0021 22.7 0.8 17 30-47 8-24 (84)
4 1g2b_A Spectrin alpha chain; c 11.8 31 0.0011 21.2 -0.9 8 148-155 54-61 (62)
5 1rr7_A Middle operon regulator 9.0 81 0.0028 23.0 0.4 12 108-119 63-74 (129)
6 2jmc_A Spectrin alpha chain, b 7.2 1.2E+02 0.004 19.4 0.4 7 148-154 24-30 (77)
7 3u28_C H/ACA ribonucleoprotein 6.9 99 0.0034 22.9 0.0 19 2-24 60-78 (114)
8 1mai_A Phospholipase C delta-1 6.9 1.4E+02 0.0047 21.1 0.8 17 94-112 79-95 (131)
9 1awj_A ITK; transferase, regul 6.8 1.3E+02 0.0046 18.9 0.6 7 148-154 53-59 (77)
10 1k1z_A VAV; SH3, proto-oncogen 6.6 94 0.0032 19.7 -0.2 7 148-154 52-58 (78)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.72 E-value=29 Score=20.14 Aligned_cols=11 Identities=64% Similarity=0.917 Sum_probs=8.7
Q ss_pred ccccccccCCC
Q 031623 29 TGIFASILSPP 39 (156)
Q Consensus 29 sgiF~SIFppp 39 (156)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 45899999975
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=17.50 E-value=58 Score=18.24 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=7.5
Q ss_pred ccC-CCCccCCCCC
Q 031623 35 ILS-PPSTAMGRNS 47 (156)
Q Consensus 35 IFp-pps~v~Gr~s 47 (156)
||+ ||+..+||.-
T Consensus 9 mfsvppppi~gr~n 22 (26)
T 2bn5_B 9 MFSVPPPPILGRGX 22 (26)
T ss_dssp CCSCCCCSCCCCC-
T ss_pred eecCCCCCcccCCc
Confidence 555 4456778763
No 3
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=12.79 E-value=61 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=8.6
Q ss_pred cccccccCCCCccCCCCC
Q 031623 30 GIFASILSPPSTAMGRNS 47 (156)
Q Consensus 30 giF~SIFppps~v~Gr~s 47 (156)
-.++|+||||+. --|.-
T Consensus 8 n~isSlfPpPPP-f~K~F 24 (84)
T 3fbi_A 8 NEVSSLYPPPPP-YVKFF 24 (84)
T ss_dssp ----CCSCCCCG-GGGGC
T ss_pred cccccCCCCCCc-hhhhc
Confidence 456789998874 33443
No 4
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=11.76 E-value=31 Score=21.18 Aligned_cols=8 Identities=25% Similarity=1.087 Sum_probs=6.1
Q ss_pred ccCCCcCC
Q 031623 148 GNWWQGTQ 155 (156)
Q Consensus 148 GnWWqGSl 155 (156)
++||+|-|
T Consensus 54 ~~Ww~g~~ 61 (62)
T 1g2b_A 54 KDWWKVEV 61 (62)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 58999854
No 5
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=8.97 E-value=81 Score=23.00 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=9.9
Q ss_pred eeccccccCCCC
Q 031623 108 YYGGQDIYSHSL 119 (156)
Q Consensus 108 yYGGqD~Ys~~~ 119 (156)
||||+.+|-|..
T Consensus 63 ~~gG~~iYIPk~ 74 (129)
T 1rr7_A 63 HLGGGQVYIPRG 74 (129)
T ss_dssp HHCSSCCCCCCS
T ss_pred HHCCeeEEeeCC
Confidence 789999997753
No 6
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=7.17 E-value=1.2e+02 Score=19.39 Aligned_cols=7 Identities=29% Similarity=1.313 Sum_probs=5.5
Q ss_pred ccCCCcC
Q 031623 148 GNWWQGT 154 (156)
Q Consensus 148 GnWWqGS 154 (156)
++||+|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 5899874
No 7
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=6.94 E-value=99 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=12.8
Q ss_pred CCCCccccCccccccccCCCCCC
Q 031623 2 DGKREMSSSFSFTTDLFGTKKSP 24 (156)
Q Consensus 2 E~kK~~sSsss~~~~LFG~k~s~ 24 (156)
|+|++++ -++|+|||-...
T Consensus 60 enK~~IG----KVdEIFGPin~~ 78 (114)
T 3u28_C 60 ENKTQVG----KVDEILGPLNEV 78 (114)
T ss_dssp TTCCEEE----EEEEEESBTTSC
T ss_pred cCCccce----eEeEEeCCCCcc
Confidence 4555554 589999996553
No 8
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=6.87 E-value=1.4e+02 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=10.9
Q ss_pred ccCCCCCCccccceeeccc
Q 031623 94 KEERAEPCHLSSSLYYGGQ 112 (156)
Q Consensus 94 q~e~~epc~lSSSIyYGGq 112 (156)
.++.++.|+| ||+||++
T Consensus 79 ~~~~~~~~~F--sIiy~~~ 95 (131)
T 1mai_A 79 ARDIPEDRCF--SIVFKDQ 95 (131)
T ss_dssp CTTSCGGGEE--EEEESSS
T ss_pred hhcCCccceE--EEEECCC
Confidence 3344455655 6999985
No 9
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=6.82 E-value=1.3e+02 Score=18.95 Aligned_cols=7 Identities=29% Similarity=1.109 Sum_probs=5.7
Q ss_pred ccCCCcC
Q 031623 148 GNWWQGT 154 (156)
Q Consensus 148 GnWWqGS 154 (156)
++||+|.
T Consensus 53 ~~Ww~~~ 59 (77)
T 1awj_A 53 IHWWRVQ 59 (77)
T ss_dssp SSBCCCC
T ss_pred CCCEEEE
Confidence 5899985
No 10
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=6.64 E-value=94 Score=19.71 Aligned_cols=7 Identities=57% Similarity=1.849 Sum_probs=5.6
Q ss_pred ccCCCcC
Q 031623 148 GNWWQGT 154 (156)
Q Consensus 148 GnWWqGS 154 (156)
.+||+|-
T Consensus 52 ~gWw~g~ 58 (78)
T 1k1z_A 52 HNWWEGR 58 (78)
T ss_dssp CSCEEEE
T ss_pred CCeEEEE
Confidence 5899985
Done!