BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031626
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HXT|A Chain A, Structure Of Human Mthfs
 pdb|3HY3|A Chain A, Structure Of Human Mthfs With 10-Formyltetrahydrofolate
 pdb|3HY4|A Chain A, Structure Of Human Mthfs With N5-Iminium Phosphate
 pdb|3HY6|A Chain A, Structure Of Human Mthfs With Adp
          Length = 203

 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 20/131 (15%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
           +  I Q          R K+ ++PR   +++HM M  I S   I  L   S NI +P   
Sbjct: 68  IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114

Query: 140 DADGNEREDGI 150
             +G+ RE+ +
Sbjct: 115 -GEGDVREEAL 124


>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
           Cycloligase From Bacillus Anthracis (Ba4489)
 pdb|2JCB|B Chain B, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
           Cycloligase From Bacillus Anthracis (Ba4489)
          Length = 200

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 91  PNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP-----VDAD 142
           P  +   K  K++ VP+   +   M    IS+ D L    MN+ EP P     V+AD
Sbjct: 69  PIIEKAWKEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALTEEVNAD 125


>pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
 pdb|3QM3|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of
           Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
           Jejuni
          Length = 357

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 89  QIPNADGDTKTRKKLYVPRV 108
           QI N +GD K  KK Y PRV
Sbjct: 312 QIGNPEGDDKPNKKYYDPRV 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,182,910
Number of Sequences: 62578
Number of extensions: 141967
Number of successful extensions: 270
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 10
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)