BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031626
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis
elegans GN=Y106G6E.4 PE=3 SV=1
Length = 206
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 27 LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
++S++R+ +K++ + E A+ + ++E+ WF+ S+RL Y+S S E+ T
Sbjct: 7 VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64
Query: 83 LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
++ + L++ K++++P+ ++ M M + ++ D+L + I +P P
Sbjct: 65 IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEPK 115
Query: 140 DADGNEREDGILLFIM 155
+ E G L I+
Sbjct: 116 WKWQSYHETGPLDLIL 131
>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1
SV=2
Length = 203
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E++T ++
Sbjct: 10 KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
+ I Q R K+ ++PR +++HM M I S I L S NI +P
Sbjct: 68 IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114
Query: 140 DADGNEREDGI 150
+G+ RE+ +
Sbjct: 115 -GEGDVREEAL 124
>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus
GN=MTHFS PE=1 SV=1
Length = 201
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR+++++ L+++ R + + V+ ++ SQR+ ++S E++T ++
Sbjct: 10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
+ I Q K ++PR +++HM M ++S D+ L S NI +P+ D
Sbjct: 68 IKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118
Query: 141 ADGNEREDGILLFIML 156
G L I +
Sbjct: 119 TREEALATGGLDLIFM 134
>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2
SV=2
Length = 203
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR+++++ L+++ R + + + V+ +++S+R+ ++S EV+T +
Sbjct: 10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
+ I K K ++PR + +++HM M ++S ++ L S NI +P
Sbjct: 68 IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQP---- 114
Query: 141 ADGNEREDGI 150
+G+ RE+ +
Sbjct: 115 GEGDVREEAL 124
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 29 SQVRKTLKS-MDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
++V T+K+ MD +L + ++KIVLE FK+++ L + +A+R D S++ I
Sbjct: 987 TEVSATVKAFMDANLPNELIELLEKIVLEGKEFKTAKELQNLLILTAIR-ADKSRVTDYI 1045
Query: 88 LQIPNADG 95
++ N DG
Sbjct: 1046 NRLDNFDG 1053
>sp|Q7V9L5|CLPX_PROMA ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=clpX PE=3 SV=1
Length = 450
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
LE+I Q+ R + TL SMD + E+NAI+ I EA K+ R ALR
Sbjct: 346 LEAILQEPRDAVIKQFITLMSMDNVKLTFEENAIKSIAKEAFRRKTGAR--------ALR 397
Query: 77 EVDTSKLLSQILQIPNAD 94
+ +L + ++P+ D
Sbjct: 398 GIVEELMLELMYKLPSQD 415
>sp|A5GHS5|CLPX_SYNPW ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Synechococcus sp. (strain WH7803) GN=clpX PE=3 SV=1
Length = 451
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 14 EHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCS 73
EH LESI + R + +TL SMD E +AI+ I EA K+ R
Sbjct: 346 EHALESILTEPRDALVKQFRTLLSMDNVQLEFEPSAIEAIAQEAHRRKTGAR-------- 397
Query: 74 ALREVDTSKLLSQILQIPN 92
ALR + +L + ++P+
Sbjct: 398 ALRGIVEELMLDLMYELPS 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,022,021
Number of Sequences: 539616
Number of extensions: 1934246
Number of successful extensions: 5039
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5036
Number of HSP's gapped (non-prelim): 14
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)