Query 031626
Match_columns 156
No_of_seqs 105 out of 1025
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 99.9 6.4E-26 1.4E-30 180.8 15.9 127 19-156 2-138 (211)
2 TIGR02727 MTHFS_bact 5,10-meth 99.9 2.3E-24 4.9E-29 167.8 14.9 121 24-156 1-122 (181)
3 PF01812 5-FTHF_cyc-lig: 5-for 99.9 8.5E-25 1.8E-29 170.2 9.7 121 24-156 1-124 (186)
4 PRK10333 5-formyltetrahydrofol 99.9 5.5E-24 1.2E-28 166.2 14.1 114 31-156 2-116 (182)
5 KOG3093 5-formyltetrahydrofola 99.9 6.9E-23 1.5E-27 159.3 13.5 130 17-156 1-135 (200)
6 COG0212 5-formyltetrahydrofola 99.8 1.2E-19 2.6E-24 142.9 14.9 121 21-156 2-124 (191)
7 PRK15055 anaerobic sulfite red 29.9 1.3E+02 0.0028 26.0 5.3 41 79-129 9-55 (344)
8 TIGR02910 sulfite_red_A sulfit 28.3 1.4E+02 0.003 25.8 5.2 41 79-129 9-55 (334)
9 COG1167 ARO8 Transcriptional r 23.7 3.9E+02 0.0084 23.6 7.4 48 47-105 367-415 (459)
10 PRK09767 hypothetical protein; 20.5 1.3E+02 0.0027 21.9 3.0 47 26-73 4-50 (117)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=99.94 E-value=6.4e-26 Score=180.83 Aligned_cols=127 Identities=62% Similarity=1.025 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCC--CCChHHHHHHHHhCCCCCCC
Q 031626 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD 96 (156)
Q Consensus 19 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~--Evdt~~li~~l~~~~~~~~~ 96 (156)
.+...|++||++++++|++++++++...++.|++++..++.+.++++|++|+|++ + ||||.+||+++++
T Consensus 2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~------- 72 (211)
T PLN02812 2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ------- 72 (211)
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999 7 9999999999999
Q ss_pred CCCC-cEEEEeeEeCCCCceEEEEeCCC-CCCccCcCcccCCCCCCCCCC------CCCCceeEEEEC
Q 031626 97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGN------EREDGILLFIML 156 (156)
Q Consensus 97 ~~~g-k~V~lP~v~~~~~~m~f~~~~~~-~~L~~g~~GI~EP~~~~~~~~------~~~~~ldliiv~ 156 (156)
.| |+|+||+|...+.+|.|+.|.+. ++|..|+|||+||........ .....+|+|||+
T Consensus 73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP 138 (211)
T PLN02812 73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLP 138 (211)
T ss_pred --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeC
Confidence 99 99999999865567999999986 789999999999986532111 135689999996
No 2
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=99.92 E-value=2.3e-24 Score=167.80 Aligned_cols=121 Identities=26% Similarity=0.358 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 031626 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (156)
Q Consensus 24 K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V 103 (156)
|+++|++++++|++++.+++.+.++.|++++..++.+.++++|++|+|++ +|+||.+|++++++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v 69 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV 69 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence 67899999999999999999999999999999999999999999999999 99999999999999 99999
Q ss_pred EEeeEeCCC-CceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626 104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML 156 (156)
Q Consensus 104 ~lP~v~~~~-~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~ 156 (156)
|||++...+ ..|.|..|++.++|..|+|||+||..+... ....+.||+|||+
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~-~~~~~~idlvivP 122 (181)
T TIGR02727 70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDSTE-PVDPDEIDLIIVP 122 (181)
T ss_pred EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcccC-cCCcccCCEEEeC
Confidence 999997543 247788888777899999999999865321 2456789999986
No 3
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=99.92 E-value=8.5e-25 Score=170.17 Aligned_cols=121 Identities=26% Similarity=0.437 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 031626 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (156)
Q Consensus 24 K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V 103 (156)
|+++|++++++|++++++++...++.|++++.++..+.++++|++|+|++ +||||.+|++.+|+ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v 69 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV 69 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence 88999999999999999999999999999999999999999999999999 99999999999999 99999
Q ss_pred EEeeEeCCC---CceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626 104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML 156 (156)
Q Consensus 104 ~lP~v~~~~---~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~ 156 (156)
+||++.... ..|.|+.+.+.++|+.|+|||+||...... ....+.+|+|||+
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~-~~~~~~idlvlVP 124 (186)
T PF01812_consen 70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESPP-PDPPEEIDLVLVP 124 (186)
T ss_dssp EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCSE-EGGGGG-SEEEEE
T ss_pred ecceecccccccceeEEeecCCcccccccccCccCCcccccc-ccccccCCEEEeC
Confidence 999998654 357888999999999999999999886532 1222389999985
No 4
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=99.92 E-value=5.5e-24 Score=166.22 Aligned_cols=114 Identities=17% Similarity=0.302 Sum_probs=102.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 031626 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED 110 (156)
Q Consensus 31 ~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V~lP~v~~ 110 (156)
++++|++++++++.++|++|++++.+++.+.++++|++|+|++ +||||.+||+.+|+ .||+|+||+|.+
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~ 70 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP 70 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence 5788999999999999999999999999999999999999999 99999999999999 999999999975
Q ss_pred C-CCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626 111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML 156 (156)
Q Consensus 111 ~-~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~ 156 (156)
. ++.|.|+.|.+.++|+.|+|||+||...... ....+.+|+|||+
T Consensus 71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~~-~~~~~~iDlviVP 116 (182)
T PRK10333 71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVRD-VLPLSRLDVLITP 116 (182)
T ss_pred CCCCEEEEEECCCCCccccCCCCCCCCCccccc-cCCcccCCEEEeC
Confidence 3 3579999999989999999999999865322 2446789999996
No 5
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.90 E-value=6.9e-23 Score=159.29 Aligned_cols=130 Identities=32% Similarity=0.581 Sum_probs=114.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCC
Q 031626 17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGD 96 (156)
Q Consensus 17 m~~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~ 96 (156)
|+.++..|+.||++++...++|+++.+..+|++|+++++++++|+++++|++|+||.+ +||+|..||+.+++
T Consensus 1 ~~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq------- 72 (200)
T KOG3093|consen 1 ADAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ------- 72 (200)
T ss_pred CchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh-------
Confidence 4567899999999999999999999999999999999999999999999999999994 49999999999999
Q ss_pred CCCCcEEEEeeEeCCCCceEEEEeCCCCC---CccCcCcccCCCCCCCCCCCCCC--ceeEEEEC
Q 031626 97 TKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNERED--GILLFIML 156 (156)
Q Consensus 97 ~~~gk~V~lP~v~~~~~~m~f~~~~~~~~---L~~g~~GI~EP~~~~~~~~~~~~--~ldliiv~ 156 (156)
.||.||+|++......|.+++++...+ |..+.|||++|.+....+...+. .||||||+
T Consensus 73 --~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivP 135 (200)
T KOG3093|consen 73 --DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVP 135 (200)
T ss_pred --cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEec
Confidence 999999999987789999999987654 45789999999875544333333 59999996
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=99.83 E-value=1.2e-19 Score=142.89 Aligned_cols=121 Identities=24% Similarity=0.360 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 031626 21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (156)
Q Consensus 21 ~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~g 100 (156)
++.|+++|++++++|.++++..+.+.+..+++++..++.+..+++|++|+|++ +|+||.++++.+|+ .|
T Consensus 2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g 70 (191)
T COG0212 2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG 70 (191)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence 46799999999999999999999999999999999999999999999999999 99999999999999 99
Q ss_pred cEEEEeeEeCCCCceEEEEeCCC--CCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626 101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDGILLFIML 156 (156)
Q Consensus 101 k~V~lP~v~~~~~~m~f~~~~~~--~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~ 156 (156)
|+|++|++.+ ..+.|..|.+. ..+..+.|||.||....... . ++.+|+|||+
T Consensus 71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~~~-~-~~~iDlvlvP 124 (191)
T COG0212 71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGRKI-P-PPEIDLVLVP 124 (191)
T ss_pred CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCCcc-C-CCcCCEEEeC
Confidence 9999999984 67889999888 88999999999999876432 2 3789999985
No 7
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=29.86 E-value=1.3e+02 Score=26.04 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=31.0
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeCCCC------ceEEEEeCCCCCCccC
Q 031626 79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNS------HMRMFHISSIDDLIAN 129 (156)
Q Consensus 79 dt~~li~~l~~~~~~~~~~~~gk~V~lP~v~~~~~------~m~f~~~~~~~~L~~g 129 (156)
++..+++.|.. . ++|+.|+....++ ...|..|++.+++.-+
T Consensus 9 ~l~~ll~~L~~---------~-y~v~aP~~~~~~g~~~~td~i~f~~i~~~~el~~~ 55 (344)
T PRK15055 9 EFNLLLKRLKK---------E-YKIYAPKRFEGKGRFSDTDNIRYGEINSIEDIVFD 55 (344)
T ss_pred HHHHHHHHHHh---------C-CEEEeeEEECCCCcccccceEEEEecCChhhcccC
Confidence 45678888765 4 8999999964444 7889999888777655
No 8
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=28.25 E-value=1.4e+02 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=30.2
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeCC------CCceEEEEeCCCCCCccC
Q 031626 79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDK------NSHMRMFHISSIDDLIAN 129 (156)
Q Consensus 79 dt~~li~~l~~~~~~~~~~~~gk~V~lP~v~~~------~~~m~f~~~~~~~~L~~g 129 (156)
++..+++.|.. . ++||.|+..+. +....|..|++.+++.-+
T Consensus 9 ~l~~ll~~L~~---------~-y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~ 55 (334)
T TIGR02910 9 EFNLLLQKLNK---------D-YKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFH 55 (334)
T ss_pred HHHHHHHHHHh---------C-CEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccC
Confidence 45678887765 4 89999998632 247889999887777655
No 9
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.70 E-value=3.9e+02 Score=23.55 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCcCccC-CCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEE
Q 031626 47 DNAIQKIVLEAPWFKS-SQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYV 105 (156)
Q Consensus 47 s~~I~~~l~~~~~~~~-a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V~l 105 (156)
...+.+.+-....|.. ..=+++.+-++ .-+|+..++..+.+ +|..|+.
T Consensus 367 ~~~L~~~~~~~~~~~~p~gG~flwl~l~--~~~~~~~l~~~a~~---------~gv~i~~ 415 (459)
T COG1167 367 LEALAEYLPELATWTRPEGGLFLWLELP--EGIDARELLAAALE---------KGVVVTP 415 (459)
T ss_pred HHHHHHhCCCCeeeecCCceEEEEEEcC--CCCCHHHHHHHHHH---------CCCEEEc
Confidence 3344444432223333 33588888888 77899999999999 8876665
No 10
>PRK09767 hypothetical protein; Provisional
Probab=20.54 E-value=1.3e+02 Score=21.90 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCC
Q 031626 26 ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCS 73 (156)
Q Consensus 26 ~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~ 73 (156)
.+|...++.|+.+++.++.-+...-...+..+ .|..-..|+-|.+=.
T Consensus 4 ~~~~~ar~lR~~~T~aE~~LW~~lr~~~~~g~-kFrRQ~pig~yi~DF 50 (117)
T PRK09767 4 KIKSNARDLRRNLTLQERKLWRYLRSRRFGDF-KFRRQHPVGSYILDF 50 (117)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcccCCC-eeEecccccCeeece
Confidence 37788899999999988877653222222111 233334556555543
Done!