RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031626
(156 letters)
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 98.1 bits (245), Expect = 1e-26
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 15 HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
H + ++K LR Q+ + + S+ + I + E + ++ + +S
Sbjct: 4 HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62
Query: 75 LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
EV+T ++ + K K++ VP+ + M IS+ D L MN+
Sbjct: 63 -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112
Query: 135 EPAP 138
EP P
Sbjct: 113 EPIP 116
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 96.9 bits (242), Expect = 4e-26
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
++ KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E
Sbjct: 4 AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
++T +++ I Q G K ++PR +++HM M I S ++ L S NI
Sbjct: 62 IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112
Query: 135 EPAPVDADGNERE-DGILLFIM 155
+P D G+ L M
Sbjct: 113 QPGEGDVREEALSTGGLDLIFM 134
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 95.3 bits (238), Expect = 1e-25
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + + L ++ + + K + P ++++ + IS E+ T +
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
+ Q + +G K++ +P+ M+ + D L +LEP
Sbjct: 60 IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI 105
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 83.8 bits (208), Expect = 4e-21
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR +V ++ R + + P FK S+++ Y EVD + L
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
++L+ K+L +P+VE + ++ + S L + I+EP
Sbjct: 61 FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE 103
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 66.9 bits (164), Expect = 9e-15
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 22/115 (19%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + R + +D S A+ +L + + + Y E++ L
Sbjct: 3 KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
+ + Y+P+V K H L +LEP
Sbjct: 58 MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT 95
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 56.5 bits (137), Expect = 8e-11
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
K LR Q+ + ++ +SH D I + ++ + + Y E
Sbjct: 23 QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
V + L+ + + P+V ++ + I N EP
Sbjct: 81 VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEPN 122
Query: 138 PVD 140
+D
Sbjct: 123 QID 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.025
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 33/143 (23%)
Query: 27 LRSQVRKTLKSMDPS-LRSH--------EDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
L + + +L ++P+ R I I+L WF +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV---------M 405
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVP----RVEDKNSHMRMFHISSIDDLIANSMNI 133
V +KL L + K + +P ++ K + H S +D NI
Sbjct: 406 VVVNKLHKYSL----VEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVD-----HYNI 455
Query: 134 LEPAPVDADGNEREDG-ILLFIM 155
+ D D I
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIG 478
Score = 32.1 bits (72), Expect = 0.075
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 49/170 (28%)
Query: 2 SQSNDSSNPEEKEHDLES----IFQQKR------ILRSQVR--KTLKSMDPS---LRSHE 46
S+S+ SSN + + H +++ + + K +L + V+ K + + S L +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTR 273
Query: 47 DNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVP 106
+ + A ++ + L + LL + L D +P
Sbjct: 274 FKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----------LP 319
Query: 107 RVEDKNS--HMRMF------HISSID-----------DLIANSMNILEPA 137
R + + + +++ D +I +S+N+LEPA
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Score = 30.2 bits (67), Expect = 0.28
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 38/134 (28%)
Query: 6 DSSNPEEKEHDLESIFQQ---------------KRILRS-QVRKTLKSMDP--------- 40
++ + + D+ S+F+ K IL ++ + S D
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 41 SLRSHEDNAIQKIVLEA-----PWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG 95
+L S ++ +QK V E + S + + T + Q ++ N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIK----TEQRQ-PSMMTRMYIEQRDRLYN--- 121
Query: 96 DTKTRKKLYVPRVE 109
D + K V R++
Sbjct: 122 DNQVFAKYNVSRLQ 135
Score = 27.9 bits (61), Expect = 1.6
Identities = 10/89 (11%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 67 CAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDD 125
C + + + + + + I+ +A + T + + + K M + F +++
Sbjct: 35 CKDVQ-DMPKSILSKEEIDHIIMSKDA--VSGTLRLFWT--LLSKQEEMVQKF----VEE 85
Query: 126 LIANSMNILEPAPVDADGNEREDGILLFI 154
++ + L +P+ + + ++I
Sbjct: 86 VLRINYKFLM-SPIKTEQRQPSMMTRMYI 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.076
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 32 RKTLKSMDPSLRSHEDNAIQKIVLEA 57
++ LK + SL+ + D++ + ++A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.19
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAP-----WF--KSSQRLCAYISCSALREVDTSKL 83
+ D + +I IV+ P F + +R +RE + S +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR---------IRE-NYSAM 1691
Query: 84 LSQILQIPNADGDTKTRK 101
+ + DG KT K
Sbjct: 1692 IFE----TIVDGKLKTEK 1705
Score = 27.3 bits (60), Expect = 2.5
Identities = 23/193 (11%), Positives = 46/193 (23%), Gaps = 80/193 (41%)
Query: 9 NPEEK-------------EHDLESIFQQKRILRSQVRKTLKSMDPSLRS----HEDNAIQ 51
NP E+ IF+ + + K K ++ S E +
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 52 K-------I---------VLEAPWFKSSQRLCA------YISCSALR---EV----DTSK 82
+ L++ + A Y +AL +V +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVE 1784
Query: 83 LLSQILQIPNADGDTKTRKKLY---VPRVEDKNSHMRMF--------------HISSIDD 125
++ R VPR E S+ M + + +
Sbjct: 1785 VVFY-------------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 126 LIANSMN-ILEPA 137
+ ++E
Sbjct: 1832 RVGKRTGWLVEIV 1844
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.360
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,180,030
Number of extensions: 112127
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 18
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)