BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031627
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 12 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 70
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGG 109
PEHV++ALE LGFG YI EV ++ K + K
Sbjct: 71 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKAS 108
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 6 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 65
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y+E
Sbjct: 66 GEDILFAMSTLGFDSYVE 83
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 64
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y+E
Sbjct: 65 GEDILFAMSTLGFDSYVE 82
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K LP + ++A++A++ + EC EFI+ ++SE++E C +E ++T+
Sbjct: 4 QDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVN 63
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y E
Sbjct: 64 GEDILFAMTSLGFENYAE 81
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A + ++IKE LP V+++A+ + F V+S S + +++ +TI
Sbjct: 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT 65
Query: 72 PEHVLKALEVLGFGEYI 88
+ +L+ L L F ++
Sbjct: 66 AKDILQTLTELDFESFV 82
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75
LPKA + +I ++ + + R+++DA+D + + V++ + V K+T+ EH
Sbjct: 5 LPKAAIERIFRQGI-GERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLXEEH- 62
Query: 76 LKAL 79
LKAL
Sbjct: 63 LKAL 66
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q
Mutant
Length = 388
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC +E + I H+++A ++LG
Sbjct: 301 PINIRNARFSEDL---------KPLDSECHCAVCQKESRAYI--HHLIRAGQILGAMLMT 349
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 350 EHNIAFYQQLMQKIRDSISEGRFSQ 374
>pdb|2YK1|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With Nicotine
Length = 216
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRT 69
S E+ PKAT+ +I + P V VA A ++ VE S +SN + +
Sbjct: 125 SSEELQAPKATLVCLISDFYPGAVTVAWKADSSPVKAGVE-TTTPSKQSNNKYAASSYLS 183
Query: 70 IAPE----HVLKALEVLGFGEYIEEVYAAYE 96
+ PE H + +V G +E+ A E
Sbjct: 184 LTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE 214
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v,
A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 299 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 347
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 348 EHNIAFYQQLMQKIRDSISEGRFSQ 372
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With
7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A E+LG
Sbjct: 298 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGEILGAMLMT 346
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 347 EHNIAFYQQLMQKIRDSISEGRFSQ 371
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 30 PADVRVARDAQDLLIECCVEFINLVSSESN-EVCSREDKRTIAPEHVLKALEVLGFGEYI 88
P ++R AR ++DL + SE + VC + + I H+++A ++LG
Sbjct: 301 PINIRNARFSEDL---------KPLDSECHCAVCQKWSRAYI--HHLIRAGQILGAMLMT 349
Query: 89 EEVYAAYEQHKLETMDSLKGGKWSN 113
E A Y+Q + DS+ G++S
Sbjct: 350 EHNIAFYQQLMQKIRDSISEGRFSQ 374
>pdb|3OA1|A Chain A, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
pdb|3OA1|B Chain B, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
Length = 229
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 KATMTKIIKEM--LPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDK 67
K + I+KE +P R+ARD L + C + ++ L +S+ ++ +K
Sbjct: 163 KMNLDDIVKEAKNVPGVTRLARDGSKLPLRCVLGWVALANSKKFQLLVESNK 214
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 55 SSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87
+ + NE R D R PE + K VL + Y
Sbjct: 243 TQDKNEAAERRDMRVSLPELLAKGFTVLNYNSY 275
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase
(Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A
Resolution
Length = 327
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 35 VARDAQDLLIECCVEFI-NLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86
V + A+ L C +E + + + N + SR ++ + EH+LK + LG+ E
Sbjct: 149 VVKLAKRYLALCEIESVKGIFNGTCNYILSRXEEERLPYEHILKEAQELGYAE 201
>pdb|2E9X|A Chain A, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|E Chain E, The Crystal Structure Of Human Gins Core Complex
Length = 149
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 71 APEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGK 110
APE L A G + +EE+ A YEQ++ + ++ GG+
Sbjct: 16 APEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGR 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,164,659
Number of Sequences: 62578
Number of extensions: 133760
Number of successful extensions: 272
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 48
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)