Query 031627
Match_columns 156
No_of_seqs 166 out of 538
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 1.6E-44 5.3E-49 288.1 11.3 131 7-138 7-137 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 9E-30 3.1E-34 193.3 10.4 98 10-107 4-101 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 2.2E-28 7.4E-33 175.5 11.1 91 10-100 3-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 5.2E-23 1.8E-27 142.9 7.4 68 14-82 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 3.1E-21 1.1E-25 150.6 7.4 75 14-89 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 5.1E-19 1.8E-23 119.7 8.3 66 15-82 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.7 1E-17 3.5E-22 124.2 7.3 87 10-98 2-88 (111)
8 1f1e_A Histone fold protein; a 99.7 2.1E-16 7.2E-21 123.2 8.4 70 10-81 77-146 (154)
9 4g92_C HAPE; transcription fac 99.6 4.6E-16 1.6E-20 116.3 7.5 78 11-89 37-114 (119)
10 2byk_A Chrac-16; nucleosome sl 99.6 1.3E-16 4.5E-21 122.6 2.9 95 11-106 15-113 (140)
11 1n1j_B NF-YC; histone-like PAI 99.6 1.2E-15 4E-20 110.2 6.6 79 11-90 15-93 (97)
12 2hue_C Histone H4; mini beta s 99.6 5.9E-15 2E-19 104.1 7.2 73 13-87 8-80 (84)
13 1id3_B Histone H4; nucleosome 99.6 7.1E-15 2.4E-19 107.4 7.0 74 12-87 25-98 (102)
14 1ku5_A HPHA, archaeal histon; 99.5 1.8E-14 6.3E-19 98.0 8.0 64 15-80 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.5 4.3E-14 1.5E-18 103.0 6.9 74 12-87 26-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 5.7E-14 1.9E-18 102.5 7.3 73 13-87 27-99 (103)
17 1jfi_A Transcription regulator 99.3 3.1E-12 1E-16 92.5 6.9 79 12-91 8-86 (98)
18 2hue_B Histone H3; mini beta s 98.9 6.3E-09 2.2E-13 72.6 8.5 71 13-83 1-74 (77)
19 3vh5_A CENP-S; histone fold, c 98.7 1.9E-08 6.5E-13 77.2 6.7 76 20-95 24-101 (140)
20 3nqj_A Histone H3-like centrom 98.7 5E-08 1.7E-12 68.8 7.7 70 14-83 2-76 (82)
21 1taf_B TFIID TBP associated fa 98.7 8E-08 2.8E-12 65.8 8.5 65 14-80 5-69 (70)
22 2yfv_A Histone H3-like centrom 98.7 4E-08 1.4E-12 71.6 6.8 69 11-79 23-97 (100)
23 3v9r_A MHF1, uncharacterized p 98.7 6.8E-08 2.3E-12 69.1 7.7 62 20-81 17-79 (90)
24 4dra_A Centromere protein S; D 98.7 5.5E-08 1.9E-12 72.3 7.0 63 20-82 32-95 (113)
25 1tzy_C Histone H3; histone-fol 98.6 1.3E-07 4.4E-12 72.3 7.3 71 12-82 59-132 (136)
26 3b0b_B CENP-S, centromere prot 98.6 1E-07 3.5E-12 70.1 6.3 63 20-82 24-87 (107)
27 3r45_A Histone H3-like centrom 98.6 1.2E-07 4.2E-12 73.9 6.7 71 11-81 73-148 (156)
28 3nqu_A Histone H3-like centrom 98.5 1.4E-07 4.8E-12 72.4 6.0 73 11-83 57-134 (140)
29 1taf_A TFIID TBP associated fa 98.4 1.8E-06 6.1E-11 58.8 7.7 60 20-81 6-65 (68)
30 2nqb_C Histone H2A; nucleosome 98.4 1.6E-06 5.3E-11 65.1 8.2 68 13-81 21-88 (123)
31 1f66_C Histone H2A.Z; nucleoso 98.3 1.6E-06 5.3E-11 65.5 7.9 69 13-81 25-93 (128)
32 1tzy_A Histone H2A-IV; histone 98.3 1.9E-06 6.5E-11 65.1 8.1 68 13-81 23-90 (129)
33 2f8n_G Core histone macro-H2A. 98.3 2.1E-06 7.1E-11 64.1 8.0 68 13-81 20-87 (120)
34 1id3_C Histone H2A.1; nucleoso 98.3 1.9E-06 6.5E-11 65.3 7.5 69 12-81 22-90 (131)
35 2nqb_D Histone H2B; nucleosome 98.3 2.3E-06 7.8E-11 64.4 7.2 68 19-87 37-104 (123)
36 1tzy_B Histone H2B; histone-fo 98.2 2.9E-06 1E-10 64.0 7.2 68 19-87 40-107 (126)
37 2ly8_A Budding yeast chaperone 98.2 1.7E-06 5.9E-11 64.9 5.9 55 33-87 63-117 (121)
38 2f8n_K Histone H2A type 1; nuc 98.2 4E-06 1.4E-10 64.8 7.7 68 13-81 42-109 (149)
39 2jss_A Chimera of histone H2B. 98.1 8.6E-06 2.9E-10 64.8 7.5 70 12-81 102-171 (192)
40 4dra_E Centromere protein X; D 98.0 4.8E-05 1.6E-09 53.7 8.7 71 12-82 9-80 (84)
41 3b0b_C CENP-X, centromere prot 98.0 4.2E-05 1.4E-09 53.6 8.2 72 11-82 4-76 (81)
42 2jss_A Chimera of histone H2B. 97.9 2.6E-05 8.9E-10 62.0 7.8 63 19-82 7-69 (192)
43 2l5a_A Histone H3-like centrom 97.9 1.1E-05 3.6E-10 66.6 4.2 53 32-84 176-228 (235)
44 1bh9_B TAFII28; histone fold, 97.7 0.00013 4.5E-09 51.8 7.8 67 15-83 16-83 (89)
45 1h3o_B Transcription initiatio 97.7 0.00021 7.2E-09 49.5 8.2 66 15-81 5-70 (76)
46 2l5a_A Histone H3-like centrom 97.3 0.00043 1.5E-08 57.0 6.3 72 12-83 8-85 (235)
47 3v9r_B MHF2, uncharacterized p 96.3 0.0083 2.8E-07 42.6 5.6 49 16-64 2-51 (88)
48 2ly8_A Budding yeast chaperone 94.7 0.21 7.2E-06 37.1 8.6 84 16-101 2-94 (121)
49 3uk6_A RUVB-like 2; hexameric 91.3 0.91 3.1E-05 36.7 8.3 70 16-85 259-334 (368)
50 2c9o_A RUVB-like 1; hexameric 85.8 2.1 7.1E-05 36.6 7.2 71 16-86 366-442 (456)
51 2v1u_A Cell division control p 85.7 1.8 6.2E-05 34.5 6.4 72 18-89 203-283 (387)
52 3ksy_A SOS-1, SON of sevenless 84.3 3.7 0.00013 39.4 8.8 69 11-81 100-168 (1049)
53 1fnn_A CDC6P, cell division co 83.2 4.1 0.00014 32.6 7.5 74 16-89 193-281 (389)
54 2qby_A CDC6 homolog 1, cell di 82.7 7.5 0.00026 30.8 8.8 76 16-91 197-281 (386)
55 1khy_A CLPB protein; alpha hel 78.4 2.6 8.9E-05 30.0 4.3 37 34-82 5-41 (148)
56 3fh2_A Probable ATP-dependent 76.4 3.2 0.00011 29.9 4.3 37 34-82 6-42 (146)
57 2y1q_A CLPC N-domain, negative 76.2 2.7 9.2E-05 30.1 3.9 38 34-83 5-42 (150)
58 3kw6_A 26S protease regulatory 74.5 2.8 9.4E-05 27.2 3.2 42 40-81 27-72 (78)
59 2qby_B CDC6 homolog 3, cell di 74.2 15 0.00052 29.3 8.3 72 16-89 197-277 (384)
60 3fes_A ATP-dependent CLP endop 73.4 3.5 0.00012 29.7 3.9 38 34-83 7-44 (145)
61 1k6k_A ATP-dependent CLP prote 71.6 3.1 0.00011 29.5 3.2 33 35-79 2-34 (143)
62 2r44_A Uncharacterized protein 69.8 21 0.00071 28.3 8.1 50 32-81 224-296 (331)
63 3aji_B S6C, proteasome (prosom 67.3 5.9 0.0002 25.9 3.6 33 51-83 40-72 (83)
64 1g8p_A Magnesium-chelatase 38 66.7 15 0.0005 29.1 6.5 50 32-81 265-321 (350)
65 3fes_A ATP-dependent CLP endop 64.4 9.4 0.00032 27.4 4.6 40 32-83 79-118 (145)
66 2dzn_B 26S protease regulatory 63.9 6.8 0.00023 25.7 3.4 30 54-83 40-69 (82)
67 3vlf_B 26S protease regulatory 61.7 7.2 0.00025 26.1 3.3 34 51-84 40-73 (88)
68 3k1j_A LON protease, ATP-depen 60.9 17 0.00058 32.2 6.4 49 33-81 313-374 (604)
69 1k6k_A ATP-dependent CLP prote 60.8 25 0.00085 24.6 6.2 37 33-81 78-114 (143)
70 3fh2_A Probable ATP-dependent 60.6 13 0.00044 26.6 4.7 39 32-82 79-117 (146)
71 2f3n_A SH3 and multiple ankyri 59.5 6.2 0.00021 25.9 2.6 23 70-92 5-27 (76)
72 2chg_A Replication factor C sm 59.4 15 0.00051 26.1 4.9 64 15-80 160-224 (226)
73 1njg_A DNA polymerase III subu 58.5 18 0.00063 25.9 5.3 63 16-79 185-248 (250)
74 2krk_A 26S protease regulatory 57.2 9.4 0.00032 25.6 3.2 31 51-81 50-80 (86)
75 3zri_A CLPB protein, CLPV; cha 56.1 8.9 0.00031 29.0 3.3 37 34-82 24-60 (171)
76 3bq7_A Diacylglycerol kinase d 55.6 7.8 0.00027 25.7 2.6 24 69-92 9-32 (81)
77 2gle_A Neurabin-1; SAM domain, 52.6 7.9 0.00027 24.9 2.2 22 70-91 7-28 (74)
78 1uxc_A FRUR (1-57), fructose r 52.5 21 0.0007 22.8 4.2 37 13-50 9-45 (65)
79 1in4_A RUVB, holliday junction 49.1 41 0.0014 27.1 6.5 66 20-85 184-253 (334)
80 3zri_A CLPB protein, CLPV; cha 46.1 27 0.00093 26.2 4.6 38 32-81 96-134 (171)
81 2y1q_A CLPC N-domain, negative 46.1 27 0.00091 24.6 4.3 37 33-81 78-114 (150)
82 3h4m_A Proteasome-activating n 44.7 20 0.00067 27.6 3.7 33 50-82 226-258 (285)
83 1kw4_A Polyhomeotic; SAM domai 43.7 15 0.00052 25.0 2.6 25 69-93 16-41 (89)
84 1jr3_A DNA polymerase III subu 41.3 51 0.0017 26.0 5.7 68 15-83 177-245 (373)
85 1khy_A CLPB protein; alpha hel 40.9 30 0.001 24.2 3.9 36 33-80 81-116 (148)
86 1ofh_A ATP-dependent HSL prote 40.6 63 0.0022 24.6 6.1 52 33-84 233-301 (310)
87 3qao_A LMO0526 protein, MERR-l 39.3 50 0.0017 26.3 5.4 116 13-139 58-175 (249)
88 5pal_A Parvalbumin; calcium-bi 38.8 75 0.0026 20.3 6.5 71 16-97 6-88 (109)
89 2d8c_A Phosphatidylcholine:cer 37.9 8.3 0.00028 26.9 0.5 23 69-91 19-41 (97)
90 2chq_A Replication factor C sm 37.8 81 0.0028 24.1 6.3 68 15-84 160-228 (319)
91 1w5s_A Origin recognition comp 37.7 1.2E+02 0.0042 24.0 7.6 69 15-83 214-294 (412)
92 1lv7_A FTSH; alpha/beta domain 37.3 31 0.0011 26.2 3.8 33 51-83 221-253 (257)
93 3pxg_A Negative regulator of g 37.1 52 0.0018 28.1 5.5 38 34-83 5-42 (468)
94 1z4h_A TORI, TOR inhibition pr 36.6 17 0.00059 22.8 1.8 26 13-38 19-45 (66)
95 1bh9_A TAFII18; histone fold, 35.9 72 0.0025 19.2 5.5 39 21-60 6-44 (45)
96 3bos_A Putative DNA replicatio 35.3 33 0.0011 25.0 3.5 59 20-80 178-241 (242)
97 4b4t_L 26S protease subunit RP 34.3 32 0.0011 29.9 3.7 31 51-81 391-421 (437)
98 3pfi_A Holliday junction ATP-d 34.2 81 0.0028 24.7 5.9 68 18-85 186-257 (338)
99 1hqc_A RUVB; extended AAA-ATPa 34.2 59 0.002 25.2 5.0 69 16-84 168-240 (324)
100 1wwi_A Hypothetical protein TT 33.8 1E+02 0.0036 23.3 6.0 58 16-75 3-60 (148)
101 3li6_A Calcium-binding protein 32.9 65 0.0022 18.4 4.0 37 58-94 5-41 (66)
102 1v85_A Similar to ring finger 32.9 27 0.00091 23.6 2.4 24 69-92 19-44 (91)
103 1sxj_D Activator 1 41 kDa subu 32.6 43 0.0015 26.3 3.9 68 15-83 191-264 (353)
104 3pvs_A Replication-associated 32.5 1.1E+02 0.0039 26.0 6.9 68 15-83 164-245 (447)
105 2pvb_A Protein (parvalbumin); 32.4 94 0.0032 19.8 5.1 78 16-96 6-87 (108)
106 4b4t_M 26S protease regulatory 32.2 33 0.0011 29.8 3.4 33 50-82 390-422 (434)
107 3bs7_A Protein aveugle; sterIl 32.2 26 0.0009 22.6 2.2 23 70-92 6-30 (78)
108 4b4t_I 26S protease regulatory 32.2 36 0.0012 29.9 3.7 68 13-81 349-422 (437)
109 1iqp_A RFCS; clamp loader, ext 31.7 1.4E+02 0.0046 22.8 6.7 67 15-83 168-235 (327)
110 3pxi_A Negative regulator of g 31.4 38 0.0013 30.6 3.9 37 34-82 5-41 (758)
111 3vlv_A ALGQ1; sugar binding pr 31.4 1.5E+02 0.0051 24.8 7.4 70 32-103 423-494 (502)
112 3nbx_X ATPase RAVA; AAA+ ATPas 31.3 2.4E+02 0.0083 24.5 8.9 63 16-81 209-284 (500)
113 2i7a_A Calpain 13; calcium-dep 30.3 1.5E+02 0.0052 21.3 9.0 47 48-95 66-121 (174)
114 4b4t_J 26S protease regulatory 30.2 41 0.0014 29.1 3.7 32 50-81 357-388 (405)
115 1pva_A Parvalbumin; calcium bi 29.9 1.1E+02 0.0037 19.4 5.3 71 15-96 6-88 (110)
116 4b4t_K 26S protease regulatory 29.8 32 0.0011 29.8 2.9 30 51-80 383-412 (428)
117 1tiz_A Calmodulin-related prot 29.6 79 0.0027 18.0 4.0 38 58-95 6-43 (67)
118 3pxg_A Negative regulator of g 29.5 1.1E+02 0.0038 26.0 6.3 56 15-82 54-115 (468)
119 4b4t_H 26S protease regulatory 29.5 37 0.0013 30.0 3.3 31 51-81 419-449 (467)
120 3fs7_A Parvalbumin, thymic; ca 29.4 1.1E+02 0.0038 19.4 5.7 71 15-96 6-88 (109)
121 2ns0_A Hypothetical protein; r 29.3 1.1E+02 0.0037 21.1 5.0 34 65-98 20-53 (85)
122 2e8o_A SAM domain and HD domai 28.4 21 0.00073 24.6 1.3 22 70-91 30-53 (103)
123 2l8n_A Transcriptional repress 28.3 54 0.0018 20.9 3.2 33 14-50 19-51 (67)
124 1r4v_A Hypothetical protein AQ 28.2 1E+02 0.0034 23.9 5.2 63 11-75 20-84 (171)
125 1qvr_A CLPB protein; coiled co 28.1 45 0.0016 30.7 3.8 37 34-82 5-41 (854)
126 1jr3_D DNA polymerase III, del 27.8 58 0.002 25.9 4.0 67 15-81 141-208 (343)
127 3h4s_E KCBP interacting Ca2+-b 27.0 85 0.0029 21.4 4.3 58 57-125 44-102 (135)
128 1a4p_A S100A10; S100 family, E 26.4 1.4E+02 0.0047 19.5 5.9 13 69-81 24-36 (96)
129 1ixz_A ATP-dependent metallopr 26.2 56 0.0019 24.7 3.5 28 53-80 227-254 (254)
130 1bu3_A Calcium-binding protein 26.2 1.3E+02 0.0044 19.1 7.0 72 14-96 5-88 (109)
131 1exr_A Calmodulin; high resolu 25.6 1.5E+02 0.0052 19.7 5.8 40 57-96 87-126 (148)
132 1r6b_X CLPA protein; AAA+, N-t 25.6 50 0.0017 29.6 3.5 24 57-80 12-35 (758)
133 1pk1_B Sex COMB on midleg CG94 25.3 40 0.0014 23.0 2.2 24 69-92 16-41 (89)
134 2qz4_A Paraplegin; AAA+, SPG7, 25.1 25 0.00085 26.4 1.2 33 50-82 217-249 (262)
135 1sxj_B Activator 1 37 kDa subu 25.0 1.4E+02 0.0047 22.8 5.6 68 15-84 165-233 (323)
136 3fwb_A Cell division control p 25.0 1.6E+02 0.0053 19.6 8.2 39 57-95 100-138 (161)
137 1iy2_A ATP-dependent metallopr 24.6 61 0.0021 25.0 3.5 66 14-80 207-278 (278)
138 3bs5_B Connector enhancer of k 24.4 48 0.0016 21.3 2.4 24 70-93 7-32 (80)
139 3pxi_A Negative regulator of g 24.2 1.4E+02 0.0049 26.8 6.3 57 14-82 53-115 (758)
140 3bs5_A Protein aveugle; sterIl 24.1 42 0.0014 23.4 2.2 24 69-92 25-50 (106)
141 1r6b_X CLPA protein; AAA+, N-t 24.0 1.3E+02 0.0045 26.9 5.9 38 33-82 78-115 (758)
142 2obh_A Centrin-2; DNA repair c 23.7 1.7E+02 0.0057 19.5 5.7 82 15-96 38-122 (143)
143 4a4j_A Pacszia, cation-transpo 23.6 30 0.001 20.5 1.2 18 68-85 48-65 (69)
144 3f8t_A Predicted ATPase involv 23.5 2.4E+02 0.0083 25.2 7.5 67 15-81 393-482 (506)
145 1rwy_A Parvalbumin alpha; EF-h 22.5 1.3E+02 0.0045 19.0 4.4 56 16-82 6-70 (109)
146 3omb_A Extracellular solute-bi 22.2 1.3E+02 0.0045 25.3 5.4 70 28-99 461-534 (535)
147 2joj_A Centrin protein; N-term 22.0 98 0.0034 18.2 3.5 38 58-95 12-49 (77)
148 1yfs_A Alanyl-tRNA synthetase; 21.8 4.2E+02 0.014 23.5 8.7 29 64-92 373-402 (465)
149 3iwl_A Copper transport protei 20.9 39 0.0013 20.3 1.3 17 69-85 45-61 (68)
150 2kz2_A Calmodulin, CAM; TR2C, 20.9 1.3E+02 0.0044 19.2 4.0 38 58-95 34-71 (94)
151 2ovk_C Myosin catalytic light 20.6 1.6E+02 0.0056 19.7 4.8 39 57-95 89-127 (159)
152 2ktg_A Calmodulin, putative; e 20.5 1E+02 0.0034 18.6 3.3 38 58-95 19-56 (85)
153 1ixs_A Holliday junction DNA h 20.5 34 0.0012 21.9 1.0 14 73-86 18-31 (62)
154 1alv_A Calpain, S-camld; calci 20.4 2.1E+02 0.0072 19.6 5.4 57 57-125 81-137 (173)
155 3pm8_A PFCDPK2, calcium-depend 20.2 2.2E+02 0.0074 20.4 5.6 70 13-85 19-89 (197)
156 3vfd_A Spastin; ATPase, microt 20.0 3.5E+02 0.012 21.8 7.6 66 18-83 284-366 (389)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=100.00 E-value=1.6e-44 Score=288.12 Aligned_cols=131 Identities=44% Similarity=0.778 Sum_probs=123.5
Q ss_pred CCCCcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhh
Q 031627 7 VGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (156)
Q Consensus 7 ~g~~~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~ 86 (156)
.+.+++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++
T Consensus 7 ~~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~ 85 (179)
T 1jfi_B 7 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGS 85 (179)
T ss_dssp -----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGG
T ss_pred CCCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHH
Confidence 346789999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 031627 87 YIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEAAAEQQRMFAEARARMN 138 (156)
Q Consensus 87 yv~~l~~~l~~~k~~~~~r~k~~~k~~~~g~~eEel~~~Q~eLf~~ar~~~~ 138 (156)
|+++|+.+|..||+.++.|+++++|++++|||+|||+++|++||++||+++.
T Consensus 86 fv~~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Qqelf~~Ar~~~~ 137 (179)
T 1jfi_B 86 YISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQA 137 (179)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888899999999999999999999999999864
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=9e-30 Score=193.29 Aligned_cols=98 Identities=23% Similarity=0.432 Sum_probs=87.6
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
+++++.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 031627 90 EVYAAYEQHKLETMDSLK 107 (156)
Q Consensus 90 ~l~~~l~~~k~~~~~r~k 107 (156)
+|+.+|..||+.++.|++
T Consensus 84 ~lk~~l~~yr~~~~~kk~ 101 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKE 101 (128)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999886654
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.95 E-value=2.2e-28 Score=175.51 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=85.8
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
..+++.||+|+|.||||+.+|++.+||+||+.+|++||++||.+|+++|++.|.+++||||+++||..||+.|||.+|++
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~ 82 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVE 82 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHH
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 031627 90 EVYAAYEQHKL 100 (156)
Q Consensus 90 ~l~~~l~~~k~ 100 (156)
+++..|.+||+
T Consensus 83 ~~~~~l~~~r~ 93 (93)
T 1n1j_A 83 PLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=5.2e-23 Score=142.90 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=64.7
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
..||+|+|.||||+++| +++||+||+++|++||++||++|+++|+++|.+++||||+++||+.|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999 799999999999999999999999999999999999999999999998754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=3.1e-21 Score=150.57 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=71.8
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
..||+++|.||||+.||. .+||+||++.|++|+++|+.+|+++|+++|.+.|||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999985 999999999999999999999999999999999999999999999999999999864
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.78 E-value=5.1e-19 Score=119.65 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=63.9
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.||+++|.||||+. ++.+||+||..+|++|+++||.+|+.+||..|.+.+||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 4899999999999999999999999999999999999999999999999887
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.72 E-value=1e-17 Score=124.17 Aligned_cols=87 Identities=16% Similarity=0.278 Sum_probs=76.9
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
..+|..||+++|.||++.. ...+||+++.++|.+|+.+|+..|+..|+.+|++.|||||+++||+.||+..|+..|..
T Consensus 2 ~~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~ 79 (111)
T 3b0c_T 2 STREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKM 79 (111)
T ss_dssp --------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTB
T ss_pred CCCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccc
Confidence 3578899999999999998 37999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 031627 90 EVYAAYEQH 98 (156)
Q Consensus 90 ~l~~~l~~~ 98 (156)
++...+..|
T Consensus 80 ~l~~l~~~~ 88 (111)
T 3b0c_T 80 PLHVLVERH 88 (111)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHh
Confidence 999999888
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.66 E-value=2.1e-16 Score=123.23 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=66.7
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
..+++.||+++|.||||+. ...|||+||++.+++|+.+|+.+|+++|+++|.+.+||||+++||++||+.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4578999999999999999 478999999999999999999999999999999999999999999999975
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.63 E-value=4.6e-16 Score=116.33 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=71.0
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
.....||.|.|.||||.. |+..+||+||..+|.+||+.||.+|+..|+..|..++||||+++||..|+...+.-+|+.
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 345689999999999965 888999999999999999999999999999999999999999999999998877666654
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.61 E-value=1.3e-16 Score=122.60 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=61.5
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCccChhhhhhhhhhcChhhhHH
Q 031627 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVC-SREDKRTIAPEHVLKALEVLGFGEYIE 89 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a-~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (156)
...+.||.|.|.||||.. |+..+||++|..+|.+||..||.+|+..|+..| ...+||||++.||..|+...++.+|+.
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999987 877899999999999999999999999999999 999999999999999998766555555
Q ss_pred ---HHHHHHHHHHHHhhhcc
Q 031627 90 ---EVYAAYEQHKLETMDSL 106 (156)
Q Consensus 90 ---~l~~~l~~~k~~~~~r~ 106 (156)
+.+..+.+|++..+.++
T Consensus 94 divP~ki~l~~~~~~~~~~~ 113 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNR 113 (140)
T ss_dssp TTSCSCC-------------
T ss_pred ccccchhhHHHHHHHHHhcc
Confidence 66678888988776544
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=1.2e-15 Score=110.24 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=69.9
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHHH
Q 031627 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEE 90 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~ 90 (156)
.....||.|.|.||||.. |+..+||+||..+|.+|++.||.+|+..|...|...+||||+++||..|+...++.+|+.+
T Consensus 15 ~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp -----CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 456799999999999987 6667899999999999999999999999999999999999999999999999999888753
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.56 E-value=5.9e-15 Score=104.08 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=68.6
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
...||+++|.||++.... .+||+|+.+.+.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||.-|
T Consensus 8 ~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 8 IQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred CCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 456999999999999863 7899999999999999999999999999999999999999999999999998765
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.55 E-value=7.1e-15 Score=107.40 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=69.1
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
....||+++|.||++.... .+||.|+.+.|.+|+.+|+..|+.+|..+|++.+||||+++||..||+.+||.-|
T Consensus 25 ~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 25 NIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp CGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred ccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 3457999999999999863 7899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.54 E-value=1.8e-14 Score=97.95 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=61.4
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
.||+++|.||+|+. +..+||+++..+|++|+..|+..|+..|+..|.+.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999997 37899999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.49 E-value=4.3e-14 Score=103.03 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=69.1
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
..-.||+++|.||++.... .+||.|+.+.|.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||.-|
T Consensus 26 ~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 26 NIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp GGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 3456999999999999864 6999999999999999999999999999999999999999999999999998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.49 E-value=5.7e-14 Score=102.50 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=64.2
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
.-.||+++|.||++.... .+||.|+.+.|.+|+..|+..|+.+|...|++.+||||+++||..||+.+||.-|
T Consensus 27 ~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 27 IQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ---CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 456999999999999864 6999999999999999999999999999999999999999999999999998765
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.32 E-value=3.1e-12 Score=92.52 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=60.0
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHH
Q 031627 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEV 91 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l 91 (156)
-...||.+.|.||||. .|+..+||.+|..+|.++++.|+.+|+..|...|...+||||+++||..|+..-+..+|+..+
T Consensus 8 ~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 8 YNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp --CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred cCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 4578999999999996 565679999999999999999999999999999999999999999999999987777776544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.91 E-value=6.3e-09 Score=72.60 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=63.9
Q ss_pred cccCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 13 DASLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP---~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
++.||+++++|+++++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.||+||.+.||--|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999943 47999999999999999999999999999999999999999999988865433
No 19
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.73 E-value=1.9e-08 Score=77.21 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=63.8
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc-ChhhhHHHHHHHH
Q 031627 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL-GFGEYIEEVYAAY 95 (156)
Q Consensus 20 ~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L-gF~~yv~~l~~~l 95 (156)
+|.||+++... .++.||.++..+|.+.+..|+..|+..+..+|.+.|||||+++||.-+++.- ++..|+......+
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~el 101 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSDEL 101 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 68899998754 3689999999999999999999999999999999999999999999999885 3334444333333
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.70 E-value=5e-08 Score=68.76 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=63.2
Q ss_pred ccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 14 ASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP-----~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
+.+|+++++|+++++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.++||--|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999883 36899999999999999999999999999999999999999999988764433
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.70 E-value=8e-08 Score=65.84 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=60.8
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
-.||.++|.+|++... --++|.|+...|.+-++..+..|+.+|...+.+.+|||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3699999999999874 3489999999999999999999999999999999999999999999985
No 22
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.68 E-value=4e-08 Score=71.56 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred cccccCcHHHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhh
Q 031627 11 KEDASLPKATMTKIIKEMLPA------DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~------~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL 79 (156)
..++.||++.+.|+++++..+ +.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|.
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 467899999999999999842 789999999999999999999999999999999999999999997774
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=6.8e-08 Score=69.12 Aligned_cols=62 Identities=8% Similarity=0.181 Sum_probs=58.9
Q ss_pred HHHHHHHhhCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 20 TMTKIIKEMLPAD-VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 20 ~V~riiKe~LP~~-~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
+|.||+.+.++.. +.||+++..+|.+.+..|+.-|+..+...|.+.|||||+++||.-+++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 6899999999865 9999999999999999999999999999999999999999999999876
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.65 E-value=5.5e-08 Score=72.28 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=58.9
Q ss_pred HHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 20 TMTKIIKEMLPA-DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 20 ~V~riiKe~LP~-~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|.+.|||||+++||.-+++.-
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 789999998753 688999999999999999999999999999999999999999999999874
No 25
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.58 E-value=1.3e-07 Score=72.28 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccccCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 12 EDASLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP---~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..--
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 5789999999999999943 4799999999999999999999999999999999999999999998886543
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.57 E-value=1e-07 Score=70.15 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 20 ~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+|.||+++... .+.++|+++..+|.+.+..|+.-|+..|..+|.+.|||||+++||.-|++..
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 58999998863 3589999999999999999999999999999999999999999999999885
No 27
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=73.87 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=64.0
Q ss_pred cccccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 11 KEDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-----~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
..++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..-
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 46789999999999999873 268999999999999999999999999999999999999999999888644
No 28
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.52 E-value=1.4e-07 Score=72.41 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=65.3
Q ss_pred cccccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 11 KEDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-----~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
..++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..--|
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 46789999999999999873 26899999999999999999999999999999999999999999988875544
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.36 E-value=1.8e-06 Score=58.78 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 20 TMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 20 ~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.|.+|+|+.. --+++.++...|.+.+..++.-|..+|..+|.+.|||||+.+||.-|++.
T Consensus 6 ~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 7899999975 35899999999999999999999999999999999999999999998764
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.35 E-value=1.6e-06 Score=65.05 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=62.8
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.||.+.|.|+||+.-. ..||+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 21 gL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 689999999999999743 35999999999999999999999999999999999999999999999863
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.34 E-value=1.6e-06 Score=65.51 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=63.5
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.||.+.|.|+||+.-....||+.+|...|..+...|...|...|...|...+|++|+|+||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 689999999999999864346999999999999999999999999999999999999999999999864
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.33 E-value=1.9e-06 Score=65.11 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=62.9
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.||.+.|.|+|++.-. ..||+.+|...|..+...|...|...|...|...+|++|+|+||..|+..
T Consensus 23 gLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 689999999999999743 35999999999999999999999999999999999999999999999863
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.32 E-value=2.1e-06 Score=64.13 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.||.+.|.|+||+.-. ..||+.+|...|..+...|...|...|...|...+|++|+|+||..|+..
T Consensus 20 gLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 689999999999999854 46999999999999999999999999999999999999999999999863
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.30 E-value=1.9e-06 Score=65.27 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=63.4
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
-.+.||.+.|.|+||+.-. ..||+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4689999999999999743 35999999999999999999999999999999999999999999999863
No 35
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.26 E-value=2.3e-06 Score=64.36 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=61.7
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 19 A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
..|+|++|++-| +..||.+|...|+.....+..-|+.+|...|...+|+||++.||..|+.-|==++.
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 104 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGEL 104 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHH
Confidence 569999999988 79999999999999999999999999999999999999999999999876544443
No 36
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.23 E-value=2.9e-06 Score=64.03 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=61.8
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 19 A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
-.|+|++|++-| +..||.+|...|+.....+..-|+.+|..+|...+|+||++.||..|+.-|==++.
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGEL 107 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL 107 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHH
Confidence 369999999988 79999999999999999999999999999999999999999999999876544443
No 37
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.7e-06 Score=64.86 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhh
Q 031627 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (156)
Q Consensus 33 ~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~y 87 (156)
-|||.++.+.+.....+|+.-|...|..+|++.+||||+++||.-||+..|-.=|
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4688888888888888889999999999999999999999999999999886433
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.21 E-value=4e-06 Score=64.85 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=62.9
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.||.+.|.|+||+.-. ..||+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 42 gLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 689999999999999743 45999999999999999999999999999999999999999999999863
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.09 E-value=8.6e-06 Score=64.82 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=63.6
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
-.+.||.+.|.|+||+.-....||+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3689999999999999743246999999999999999999999999999999999999999999999863
No 40
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.97 E-value=4.8e-05 Score=53.71 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=63.2
Q ss_pred ccccCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 12 EDASLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
-+..+|..+|.||++...- +..+|++||..++.+....||.--...|...++.++-.+|..+|+-+.+-.|
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4678999999999998886 6799999999999999999999999999999999999999999998876544
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.96 E-value=4.2e-05 Score=53.61 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=63.1
Q ss_pred cccccCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 11 KEDASLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.++..+|..+|.||++.... +..||++||..++.+....||.--...|...+..++-..|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45778999999999999987 5789999999999999999999999999999998999999999998876543
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.94 E-value=2.6e-05 Score=62.01 Aligned_cols=63 Identities=16% Similarity=0.382 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 19 A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||++.||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 469999999988 799999999999999999999999999999999999999999999998744
No 43
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.1e-05 Score=66.56 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=50.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcCh
Q 031627 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF 84 (156)
--|||.++.+.+.....+|+.-|...|..+|++.+||||+++||.-||+.+|-
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999998763
No 44
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.74 E-value=0.00013 Score=51.77 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccChhhhhhhhhhcC
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSRED-KRTIAPEHVLKALEVLG 83 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~-RKTI~~edVl~AL~~Lg 83 (156)
.||++.|.|||...+ +..++.+...+|.=.+.+||--|..+|.+++...+ ...|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 799999999999998 57899999999999999999999999999999765 44899999999987664
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.69 E-value=0.00021 Score=49.47 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=61.6
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
-|++..++.+++++=| +..+..|+.++|.+.|.+||.-+++.|-..|++.+-.||...||.-.|+.
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999876 89999999999999999999999999999999999999999999887764
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00043 Score=57.01 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=62.5
Q ss_pred ccccCcHHHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 12 EDASLPKATMTKIIKEMLPA------DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~------~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
..+.+|+.+.+|+++++..+ +.++...|..+|++++.-|+--|-..+|-.|.+.+|.||.+.|+--|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 45789999999999998653 6899999999999999999999999999999999999999999988865443
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0083 Score=42.55 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031627 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSR 64 (156)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~ 64 (156)
||+.+|.||++.... ++.||++||..++.+....||.--...|.+..+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999998775 5799999999999999999998777777655444
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.21 Score=37.09 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHhhCC------CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCccChhhhhhhhhhcChhh
Q 031627 16 LPKATMTKIIKEMLP------ADVRVARDAQDLLIECCVEFINLVSSESNEVCSRE---DKRTIAPEHVLKALEVLGFGE 86 (156)
Q Consensus 16 LP~A~V~riiKe~LP------~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~---~RKTI~~edVl~AL~~LgF~~ 86 (156)
+|+.+.+|+++++.. .+.+++.+|..+|++++..|+--|-..+|-.|.+. |=|.|+.+ +...+.. =+.+
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~~ 79 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLKS 79 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHHH
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHHH
Confidence 688888888887542 26899999999999999999999999999877664 44567764 4333321 1234
Q ss_pred hHHHHHHHHHHHHHH
Q 031627 87 YIEEVYAAYEQHKLE 101 (156)
Q Consensus 87 yv~~l~~~l~~~k~~ 101 (156)
|+..+-...-.|-+.
T Consensus 80 ~l~~i~rdav~yaeh 94 (121)
T 2ly8_A 80 FLESVIRDSVTYTEH 94 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444433334333
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.27 E-value=0.91 Score=36.71 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh-cChh
Q 031627 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSREDKRTIAPEHVLKALEV-LGFG 85 (156)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~----eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~-LgF~ 85 (156)
++...+..|++..+. .++.++.++...|.+.+. -.+..+-..|...|...++.+|+.+||..|++. ++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~ 334 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 334 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHH
Confidence 455666777775553 357799999999998876 244555566777888889999999999999986 4443
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.82 E-value=2.1 Score=36.64 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHH-H---HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc-Chhh
Q 031627 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECC-V---EFINLVSSESNEVCSREDKRTIAPEHVLKALEVL-GFGE 86 (156)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~-~---eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L-gF~~ 86 (156)
++..-+..+++..+. .++.++.++...|.+.| . -....+...|..+|..+++.+|+.+||..|+.-+ +...
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~ 442 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKS 442 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHH
Confidence 344556666665443 24679999999988877 1 3455566778889999999999999999998653 4443
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.75 E-value=1.8 Score=34.54 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhH
Q 031627 18 KATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI 88 (156)
Q Consensus 18 ~A~V~riiKe~LP---~~~~iskda~~~i~~c~~------eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv 88 (156)
...+..|++..+. .+..++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|+..+..+.+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~ 282 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVS 282 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHH
Confidence 5666677765543 246789999999988876 3555666677888888899999999999999988544443
Q ss_pred H
Q 031627 89 E 89 (156)
Q Consensus 89 ~ 89 (156)
.
T Consensus 283 ~ 283 (387)
T 2v1u_A 283 E 283 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=84.26 E-value=3.7 Score=39.36 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=51.4
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
--.+.+|...|.|++|... .-||+..|..-+.-...-...-|---|-..|...+++.|++.||..|+..
T Consensus 100 ~~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 100 RNPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cCCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 3468999999999997766 45999888887766544444444444666677788889999999887743
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.24 E-value=4.1 Score=32.60 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 16 LPKATMTKIIKEMLPA---DVRVARDAQDLLIECC------------VEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 16 LP~A~V~riiKe~LP~---~~~iskda~~~i~~c~------------~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
|+...+..+++..+.. ...++.++...|.+.+ --++..+...|...|...++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446666777665532 3478999999998888 234555567778888888999999999999998
Q ss_pred hcChhhhHH
Q 031627 81 VLGFGEYIE 89 (156)
Q Consensus 81 ~LgF~~yv~ 89 (156)
.+....+..
T Consensus 273 ~~~~~~~~~ 281 (389)
T 1fnn_A 273 EVLFGISEE 281 (389)
T ss_dssp HHSCCCCHH
T ss_pred HHhhhhHHH
Confidence 876554433
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.66 E-value=7.5 Score=30.79 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhh
Q 031627 16 LPKATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (156)
Q Consensus 16 LP~A~V~riiKe~LP---~~~~iskda~~~i~~c~~------eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~ 86 (156)
|....+..+++..+. ....++.++...|.+.+. -.+.-+...|...|..+++.+|+.+||..|+..+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445567777765432 146789999998888775 23444666788888888999999999999999886555
Q ss_pred hHHHH
Q 031627 87 YIEEV 91 (156)
Q Consensus 87 yv~~l 91 (156)
+...+
T Consensus 277 ~~~~~ 281 (386)
T 2qby_A 277 VRDII 281 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 55
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=78.42 E-value=2.6 Score=30.00 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+++..++.+|.. |...|...+...|.++|++.||=.-
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcC
Confidence 567777777765 7888999999999999999998443
No 56
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=76.35 E-value=3.2 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
++|..++.+|.. |...|...+...|.++|++.||=.-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 577777777766 7888999999999999999998654
No 57
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=76.21 E-value=2.7 Score=30.06 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
+++..++.+|.. |...|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 577778777765 78889999999999999999985433
No 58
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.50 E-value=2.8 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 40 QDLLIECCVEF----INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 40 ~~~i~~c~~eF----I~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
...|.+.+.-| |..|..+|...|...++..|+.+|+..||+.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34444444444 6777888888899999999999999999865
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.22 E-value=15 Score=29.31 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhh
Q 031627 16 LPKATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (156)
Q Consensus 16 LP~A~V~riiKe~LP---~~~~iskda~~~i~~c~~------eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~ 86 (156)
|....+..|++..+. ....++.++...+.+.+. -.+.-+...|...|. +..+|+.+||..|+..+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~ 274 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQER 274 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcch
Confidence 445667777776432 246789999988888776 123334455666666 677899999999999875444
Q ss_pred hHH
Q 031627 87 YIE 89 (156)
Q Consensus 87 yv~ 89 (156)
|..
T Consensus 275 ~~~ 277 (384)
T 2qby_B 275 LIE 277 (384)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 60
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=73.36 E-value=3.5 Score=29.75 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
+++..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 578888888866 77889999999999999999985543
No 61
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=71.57 E-value=3.1 Score=29.48 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhh
Q 031627 35 VARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (156)
Q Consensus 35 iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL 79 (156)
+|..++.+|.. |...|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 45566666654 7788888899999999999998
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.84 E-value=21 Score=28.32 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=35.4
Q ss_pred CccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 32 DVRVARDAQDLLIECCVEF-----------------------INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eF-----------------------I~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
++.++.++.+.|.+.+... ...+...|...|.-.++..|+++||..|+..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5678888888887655322 1233445666777889999999999988754
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=67.25 E-value=5.9 Score=25.85 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
|..|..+|...|...++..|+.+|+..||+..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445666788889999999999999999987653
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.73 E-value=15 Score=29.08 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=39.1
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 32 DVRVARDAQDLLIECCVE-------FINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~e-------FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.++.++...|.+.+.- -+..+...|...|...++.+|+.+||..|+..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 568999999999887653 34455566777888889999999999988754
No 65
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=64.39 E-value=9.4 Score=27.38 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=32.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
...+|..+..+|.+ |...|..-+...|+.+|++-||=.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 46688888888876 66778888999999999999985544
No 66
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=63.90 E-value=6.8 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 54 VSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 54 lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
|..+|...|...++..|+.+|+..|++..-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 334566677777889999999999998763
No 67
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=61.70 E-value=7.2 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhhcCh
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF 84 (156)
|.-|..+|...|.+.++..|+.+|+..|++.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5566667777888888999999999999976543
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.91 E-value=17 Score=32.18 Aligned_cols=49 Identities=10% Similarity=0.274 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 33 VRVARDAQDLLIECCV-------------EFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 33 ~~iskda~~~i~~c~~-------------eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
..++.++...|.+.+. --+.-|-..|..+|...++..|+.+||..|+..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 5799999999998664 234445567889999999999999999999954
No 69
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=60.84 E-value=25 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 33 ~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
..+|..+..+|.+ |...|..-+...|+++|++-||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 5678887777765 677788788899999999999854
No 70
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=60.60 E-value=13 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=31.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
...+|..+..+|.+ |...|..-+...|+.+|++-||=.-
T Consensus 79 ~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 79 HIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 35689999888877 6667788899999999999998543
No 71
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=59.54 E-value=6.2 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=19.9
Q ss_pred cChhhhhhhhhhcChhhhHHHHH
Q 031627 70 IAPEHVLKALEVLGFGEYIEEVY 92 (156)
Q Consensus 70 I~~edVl~AL~~LgF~~yv~~l~ 92 (156)
=++++|..-|+.+||+.|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999999999987654
No 72
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=59.35 E-value=15 Score=26.15 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=41.1
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
.++..-+..+++..+. .+..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3455666667666543 24568898888888776544444444444444333 6899999988875
No 73
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.50 E-value=18 Score=25.89 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhh
Q 031627 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (156)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL 79 (156)
|+..-+..+++..+. .+..++.++...|.+.+.--..++-......+. .++++|+.+||-.++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHh
Confidence 445566667665553 256789999888888776555555444444333 345589999998876
No 74
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=57.16 E-value=9.4 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
|..|..+|...|...++..|+.+|+..||+.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445667888888888899999999999865
No 75
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=56.15 E-value=8.9 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+++..++.+|.. |...|...+...|.++|++.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 466677777665 7788899999999999999998554
No 76
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=55.63 E-value=7.8 Score=25.67 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.6
Q ss_pred ccChhhhhhhhhhcChhhhHHHHH
Q 031627 69 TIAPEHVLKALEVLGFGEYIEEVY 92 (156)
Q Consensus 69 TI~~edVl~AL~~LgF~~yv~~l~ 92 (156)
.=++++|..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 77
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=52.60 E-value=7.9 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.3
Q ss_pred cChhhhhhhhhhcChhhhHHHH
Q 031627 70 IAPEHVLKALEVLGFGEYIEEV 91 (156)
Q Consensus 70 I~~edVl~AL~~LgF~~yv~~l 91 (156)
=+++||..-|..+||+.|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999999998755
No 78
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.45 E-value=21 Score=22.79 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.6
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF 50 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eF 50 (156)
...++.+||.|++...- ....||.+++.-|.+.+.++
T Consensus 9 ~aGVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHTSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 34678999999998632 12379999999988887654
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.05 E-value=41 Score=27.05 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=44.1
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChh
Q 031627 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCV---EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (156)
Q Consensus 20 ~V~riiKe~LP-~~~~iskda~~~i~~c~~---eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~ 85 (156)
.+..|++.... -++.++.++...|.+.+. -.+.-+-..+.+.|...++..|+.++|..||+.++++
T Consensus 184 ~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 184 ELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 45555554321 146788888888876532 2333344556667777788889999999999988754
No 80
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=46.12 E-value=27 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=32.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCccChhhhhhhhhh
Q 031627 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCS-REDKRTIAPEHVLKALEV 81 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eFI~~lsseAn~~a~-~~~RKTI~~edVl~AL~~ 81 (156)
...+|..+..+|.+ |...|. .-|...|+.+|++-||=.
T Consensus 96 ~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 96 YPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 36689999988887 777788 889999999999999843
No 81
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=46.12 E-value=27 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 33 ~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
..+|..+..+|.. |...|..-+...|+++|++-||=.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 4677777776655 666777778889999999999853
No 82
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=44.66 E-value=20 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 50 FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 456677788888889999999999999998654
No 83
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=43.68 E-value=15 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=21.0
Q ss_pred ccChhhhhhhhhhc-ChhhhHHHHHH
Q 031627 69 TIAPEHVLKALEVL-GFGEYIEEVYA 93 (156)
Q Consensus 69 TI~~edVl~AL~~L-gF~~yv~~l~~ 93 (156)
.-+++||..-|..+ ||++|++...+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 46899999999999 99999876543
No 84
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=41.26 E-value=51 Score=26.03 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=41.3
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
.++...+..+++..+. .++.++.++...|.+.+.--+..+-......+.. +..+|+.+||..++....
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCCC
Confidence 3455667777765543 2567899998888876544333333333222222 245799999888776654
No 85
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=40.90 E-value=30 Score=24.21 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 33 ~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
..+|..+..+|.. |...+..-+...|+.+|++-||=
T Consensus 81 ~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 81 VQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 3466666666554 56666666888999999999986
No 86
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=40.59 E-value=63 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHHHHH------------HHHHHHH----HHHHHhhhcCCC-ccChhhhhhhhhhcCh
Q 031627 33 VRVARDAQDLLIECCVE------------FINLVSS----ESNEVCSREDKR-TIAPEHVLKALEVLGF 84 (156)
Q Consensus 33 ~~iskda~~~i~~c~~e------------FI~~lss----eAn~~a~~~~RK-TI~~edVl~AL~~LgF 84 (156)
+.++.++.+.|.+.+.. ....|-. .+.+.+...++. +|+.+||..|+..+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 57999999999887732 2222222 122333334433 5999999999987643
No 87
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=39.33 E-value=50 Score=26.28 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=46.2
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHH
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVY 92 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~ 92 (156)
++.+|..-|.+++...-++...+=..-+..|.+-....-..+..--..+....+..+++.+..+..+..-.. .|..++.
T Consensus 58 ~~G~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~~~~~e~f~~f~~~~~-~y~~e~~ 136 (249)
T 3qao_A 58 ELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSN-PYEEEAR 136 (249)
T ss_dssp HTTCCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHTTTCCSSSS-TTCCHHH
T ss_pred HCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHhcCcchh-HHHHHHH
Confidence 457899999999975332222222333344444444444444444445555677888999988776542111 5655555
Q ss_pred HHHH--HHHHHhhhcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 031627 93 AAYE--QHKLETMDSLKGGKWSNGAEMTEEEAAAEQQRMFAEARARMNG 139 (156)
Q Consensus 93 ~~l~--~~k~~~~~r~k~~~k~~~~g~~eEel~~~Q~eLf~~ar~~~~~ 139 (156)
+... .|++... ...+||.+ ....-.++|..-.+.+..
T Consensus 137 ~~~G~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~l~~~~~~ 175 (249)
T 3qao_A 137 KLWGDKVVEKANE---------KVNNMSEK-EQLTLKESFDAEFRHLAS 175 (249)
T ss_dssp HHCC---------------------------------------------
T ss_pred HHHChHHHHHHHH---------HHHhcCHH-HHHHHHHHHHHHHHHHHh
Confidence 4432 2222221 11234443 333345677777777776
No 88
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=38.85 E-value=75 Score=20.29 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhcCCCccChhhhhhhhhhc---C
Q 031627 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL---G 83 (156)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~ls---------seAn~~a~~~~RKTI~~edVl~AL~~L---g 83 (156)
++..-|.++++..=. +-.|+-+ +|+.+++ ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 667788888887644 3344432 3333332 346666777888899999999999988 6
Q ss_pred hhhhHHHHHHHHHH
Q 031627 84 FGEYIEEVYAAYEQ 97 (156)
Q Consensus 84 F~~yv~~l~~~l~~ 97 (156)
..---..+...+..
T Consensus 75 ~~~~~~~~~~~~~~ 88 (109)
T 5pal_A 75 RDLNDTETKALLAA 88 (109)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 65444445544433
No 89
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=37.88 E-value=8.3 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.0
Q ss_pred ccChhhhhhhhhhcChhhhHHHH
Q 031627 69 TIAPEHVLKALEVLGFGEYIEEV 91 (156)
Q Consensus 69 TI~~edVl~AL~~LgF~~yv~~l 91 (156)
.-+++||..-|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999998654
No 90
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=37.83 E-value=81 Score=24.07 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=41.2
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcCh
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF 84 (156)
.+|...+..++...+. .++.++.++...|.+.+.--+..+-......+.. ..+|+.+||..++....-
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~ 228 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARP 228 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCCCH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCCH
Confidence 3455666666665543 3578999999888876543333333333233322 346999999888765543
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=37.73 E-value=1.2e+02 Score=24.03 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=48.9
Q ss_pred cCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 15 SLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCV---------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP---~~~~iskda~~~i~~c~~---------eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.|+..-+..+++..+. ....++.++...|.+.+. -++..+...|...+...++.+|+.+||..++..+
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3445566677654331 124588888888888776 2666777778888888889999999998888765
Q ss_pred C
Q 031627 83 G 83 (156)
Q Consensus 83 g 83 (156)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 4
No 92
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=37.28 E-value=31 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
|..+...|...|...++.+|+.+||..|++..-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 445556777788888999999999999998653
No 93
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=37.09 E-value=52 Score=28.08 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
+++..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 577778777766 77889999999999999999986554
No 94
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=36.56 E-value=17 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.5
Q ss_pred cccCcHHHHHHHHHhh-CCCCccccHH
Q 031627 13 DASLPKATMTKIIKEM-LPADVRVARD 38 (156)
Q Consensus 13 d~~LP~A~V~riiKe~-LP~~~~iskd 38 (156)
-+.+.++||+++|+.- +|..++|+.-
T Consensus 19 ~lgvsrstiy~~~~~g~fP~piklG~~ 45 (66)
T 1z4h_A 19 DTGFGKTFIYDRIKSGDLPKAKVIHGR 45 (66)
T ss_dssp HHSSCHHHHHHHHHHHHCCCSEESSSC
T ss_pred HHCcCHHHHHHHHHCCCCCCCEEeCCC
Confidence 4589999999999875 7866777653
No 95
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=35.85 E-value=72 Score=19.19 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 031627 21 MTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNE 60 (156)
Q Consensus 21 V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~ 60 (156)
|..+|-.-. +.-.-..|+..+|-+..++||..+..+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555565443 355678899999999999999999998875
No 96
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=35.34 E-value=33 Score=24.96 Aligned_cols=59 Identities=8% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 20 ~V~riiKe~LP-~~~~iskda~~~i~~c~~----eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
.+.++++..+. .++.++.++.+.|.+.+. +.++.|. .+...|..++ ++|+.+||..+|+
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34444444332 246788888888877653 3333333 3334444344 4699999988875
No 97
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.28 E-value=32 Score=29.92 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
|..|..+|.-.|..+++..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5566778888888999999999999999754
No 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=34.24 E-value=81 Score=24.75 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCC-CCccccHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChh
Q 031627 18 KATMTKIIKEMLP-ADVRVARDAQDLLIECCVE---FINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (156)
Q Consensus 18 ~A~V~riiKe~LP-~~~~iskda~~~i~~c~~e---FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~ 85 (156)
...+..+++..+. .++.++.++...|.+.+.- .+..+-..+...|...+..+|+.+||-.++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4445555554432 2467899999888875422 233334445567777888899999999999887654
No 99
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.17 E-value=59 Score=25.21 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcCh
Q 031627 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVE---FINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (156)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~e---FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF 84 (156)
+|..-+..+++..+. .++.++.++...|.+.+.- .+..+...+...|...+..+|+.+|+..++..++.
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 444555666665442 2467999999888887522 22333334444555567788999999998877654
No 100
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=33.85 E-value=1e+02 Score=23.31 Aligned_cols=58 Identities=5% Similarity=0.092 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhh
Q 031627 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75 (156)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edV 75 (156)
+|-+-+.|+.+.+. ++-|.|+-..-+.+....=+.-|.-.|...|..+||-+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 46677899999987 57777888888888888888888889999999999999999986
No 101
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=32.94 E-value=65 Score=18.45 Aligned_cols=37 Identities=5% Similarity=-0.170 Sum_probs=23.6
Q ss_pred HHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHH
Q 031627 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 (156)
Q Consensus 58 An~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~ 94 (156)
+....-.++.-.|+.+++..+|..+|..--...+...
T Consensus 5 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~ 41 (66)
T 3li6_A 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI 41 (66)
T ss_dssp HHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHH
Confidence 3344455666789999999999888754333333333
No 102
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=32.91 E-value=27 Score=23.55 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.0
Q ss_pred ccChhhhhhhhhhcCh--hhhHHHHH
Q 031627 69 TIAPEHVLKALEVLGF--GEYIEEVY 92 (156)
Q Consensus 69 TI~~edVl~AL~~LgF--~~yv~~l~ 92 (156)
.=+++||..-|+.+|| +.|++...
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F~ 44 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRFL 44 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4589999999999999 88876543
No 103
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.61 E-value=43 Score=26.26 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=41.9
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcC-CCccChhhhhhhhhhcC
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSRED-KRTIAPEHVLKALEVLG 83 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~----eFI~~lsseAn~~a~~~~-RKTI~~edVl~AL~~Lg 83 (156)
.++...+..+++..+. .++.++.++...|.+.+. ..++.+-..+ ..+...+ +++|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 4455566666665442 357799999988887643 3344443322 2333333 23899999999888655
No 104
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.51 E-value=1.1e+02 Score=26.03 Aligned_cols=68 Identities=13% Similarity=0.270 Sum_probs=45.3
Q ss_pred cCcHHHHHHHHHhhCC--------CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHhhhc--CCCccChhhhhhhhh
Q 031627 15 SLPKATMTKIIKEMLP--------ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSRE--DKRTIAPEHVLKALE 80 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP--------~~~~iskda~~~i~~c~~----eFI~~lsseAn~~a~~~--~RKTI~~edVl~AL~ 80 (156)
.+|...+..+++..+. .++.++.++.+.|.+.+. ..++.|- .+...|... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 3556666677766553 347799999999988753 3333333 234444423 667899999999998
Q ss_pred hcC
Q 031627 81 VLG 83 (156)
Q Consensus 81 ~Lg 83 (156)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 763
No 105
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=32.38 E-value=94 Score=19.75 Aligned_cols=78 Identities=10% Similarity=-0.073 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHhhCCCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc---ChhhhHHHH
Q 031627 16 LPKATMTKIIKEMLPADVRVARDA-QDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL---GFGEYIEEV 91 (156)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskda-~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L---gF~~yv~~l 91 (156)
++..-|..|++..= .+-.|+-+- ..++.. ...- .--...+....-.++.-+|+.+++..+|..+ |..-=-..+
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~-~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 82 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGL-ASKS-LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAET 82 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTG-GGSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhC-ChhH-HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHH
Confidence 56778888888754 333455332 211110 0000 0012346666677788899999999999999 544223344
Q ss_pred HHHHH
Q 031627 92 YAAYE 96 (156)
Q Consensus 92 ~~~l~ 96 (156)
...+.
T Consensus 83 ~~~~~ 87 (108)
T 2pvb_A 83 KAFLA 87 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 106
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.22 E-value=33 Score=29.77 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 50 FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
-|..|..+|...|.+.++..|+.+|+..||+..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356677788888888999999999999998653
No 107
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=32.21 E-value=26 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.4
Q ss_pred cChhhhhhhhhhc--ChhhhHHHHH
Q 031627 70 IAPEHVLKALEVL--GFGEYIEEVY 92 (156)
Q Consensus 70 I~~edVl~AL~~L--gF~~yv~~l~ 92 (156)
=+++||..-|+.+ ||+.|++...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4789999999997 9999987654
No 108
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.21 E-value=36 Score=29.89 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=41.9
Q ss_pred cccCcHH-HHHHHHHhhCCCCccccHHH-HHHHHHHH----HHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 13 DASLPKA-TMTKIIKEMLPADVRVARDA-QDLLIECC----VEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 13 d~~LP~A-~V~riiKe~LP~~~~iskda-~~~i~~c~----~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.+.+|-. .-..|++-.+. .+.++.|. .+.|.+.+ .-=|..|..+|...|..+++..|+.+|+..|++.
T Consensus 349 ~v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 349 LFENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3456643 33444544432 34444432 23344332 2336677788888899999999999999999854
No 109
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=31.71 E-value=1.4e+02 Score=22.85 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=39.0
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcC
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~Lg 83 (156)
.++...+..+++..+. .++.++.++...|.+.+.--+..+-......+. ...+|+.++|..++....
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~~ 235 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVASRAR 235 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHCCCC
Confidence 3455666666665542 367799999988887764322222222222221 223688888887766543
No 110
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.41 E-value=38 Score=30.58 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+++..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 577788877765 7788999999999999999998554
No 111
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=31.35 E-value=1.5e+02 Score=24.80 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=41.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc--ChhhhhhhhhhcChhhhHHHHHHHHHHHHHHhh
Q 031627 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTI--APEHVLKALEVLGFGEYIEEVYAAYEQHKLETM 103 (156)
Q Consensus 32 ~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI--~~edVl~AL~~LgF~~yv~~l~~~l~~~k~~~~ 103 (156)
.+.++.|-...+...-+..-.++......+-. |+..+ .-+..++-|+.+|++.+++...+.+++|++..+
T Consensus 423 ~~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i~--G~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~~ 494 (502)
T 3vlv_A 423 GVNLTVEEREIYDKYWPDVKTYMFEMGQSWVM--GTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGAA 494 (502)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhcc
Confidence 56777664443443334333444333333322 33334 245678899999999999999999998876554
No 112
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.26 E-value=2.4e+02 Score=24.52 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVE-------------FINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~e-------------FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
+....+.++....- .+.++.+..+.|.+.+.. -...+...|...|.-.+|..|+++||. ++..
T Consensus 209 ~~~e~l~~~~~~~~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 209 VTDEEYERWQKEIG--EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp BCHHHHHHHHHHHT--TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred ecHHHHHHHHhcCC--cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 33444444444432 578899988888877642 122244556778888999999999999 4433
No 113
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=30.33 E-value=1.5e+02 Score=21.30 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=32.2
Q ss_pred HHHHHHHH-----HHHHHHhhhcCCCccChhhhhhhhhhc----ChhhhHHHHHHHH
Q 031627 48 VEFINLVS-----SESNEVCSREDKRTIAPEHVLKALEVL----GFGEYIEEVYAAY 95 (156)
Q Consensus 48 ~eFI~~ls-----seAn~~a~~~~RKTI~~edVl~AL~~L----gF~~yv~~l~~~l 95 (156)
.+|+.+++ ..|....- ++.-+|+.+++..+|..+ |+.-=-+.+...+
T Consensus 66 ~EF~~~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~ 121 (174)
T 2i7a_A 66 EEFARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVT 121 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHH
Confidence 35555443 45777777 888899999999999999 8752223344444
No 114
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.22 E-value=41 Score=29.08 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 50 FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
=|..|..+|...|.+++|..|+.+|+..||+.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35667778888898999999999999999854
No 115
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=29.87 E-value=1.1e+02 Score=19.44 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=42.6
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhcCCCccChhhhhhhhhhc---
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL--- 82 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~ls---------seAn~~a~~~~RKTI~~edVl~AL~~L--- 82 (156)
.++..-|.++++..= .+-.|+- .+|+.++. ..+....-.++.-+|+.+++..+|..+
T Consensus 6 ~~t~~e~~~~~~~~d-~~g~i~~----------~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 74 (110)
T 1pva_A 6 LLKADDIKKALDAVK-AEGSFNH----------KKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAAD 74 (110)
T ss_dssp HSCHHHHHHHHHHTC-STTCCCH----------HHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcH----------HHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhc
Confidence 355667778887643 2333442 23333331 346666677888899999999999999
Q ss_pred ChhhhHHHHHHHHH
Q 031627 83 GFGEYIEEVYAAYE 96 (156)
Q Consensus 83 gF~~yv~~l~~~l~ 96 (156)
|..--...+...+.
T Consensus 75 g~~~~~~~~~~~~~ 88 (110)
T 1pva_A 75 GRDLTDAETKAFLK 88 (110)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 54322334444443
No 116
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.83 E-value=32 Score=29.80 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
|..|..+|.-.|.+.+|..|+.+|+..|+.
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 667778888889999999999999999874
No 117
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=29.63 E-value=79 Score=17.97 Aligned_cols=38 Identities=5% Similarity=-0.008 Sum_probs=25.8
Q ss_pred HHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 58 An~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
+....-.++.-+|+.+++..+|..+|..---..+...+
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 43 (67)
T 1tiz_A 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43 (67)
T ss_dssp HHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34445566777899999999999998753333444444
No 118
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=29.51 E-value=1.1e+02 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHHhhCC------CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 15 SLPKATMTKIIKEMLP------ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP------~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
.+....|.+-+...++ ....+|..++.+|.. |...|..-+...|.++|++-||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 4445556666666553 235688888888876 6666777889999999999998543
No 119
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.47 E-value=37 Score=30.03 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 51 I~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
|.-|..+|...|.+.+++.|+.+|+..|++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5667778888888999999999999999864
No 120
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=29.42 E-value=1.1e+02 Score=19.42 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=44.2
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhcCCCccChhhhhhhhhhc---
Q 031627 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLV---------SSESNEVCSREDKRTIAPEHVLKALEVL--- 82 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~l---------sseAn~~a~~~~RKTI~~edVl~AL~~L--- 82 (156)
.++..-|.++++..= .+-.|+-+ +|+.++ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 466778888888653 23344432 333333 2345666667788889999999999999
Q ss_pred ChhhhHHHHHHHHH
Q 031627 83 GFGEYIEEVYAAYE 96 (156)
Q Consensus 83 gF~~yv~~l~~~l~ 96 (156)
|..---..+...+.
T Consensus 75 ~~~~~~~~~~~~~~ 88 (109)
T 3fs7_A 75 ARVLTSAETKAFLA 88 (109)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 55433344444443
No 121
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=29.30 E-value=1.1e+02 Score=21.09 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=28.2
Q ss_pred cCCCccChhhhhhhhhhcChhhhHHHHHHHHHHH
Q 031627 65 EDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQH 98 (156)
Q Consensus 65 ~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l~~~ 98 (156)
.--|||.|.+|-.||..=+|-.+.+.+....-.-
T Consensus 20 ~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~L 53 (85)
T 2ns0_A 20 ADSASICPSDVARAVAPDDWRPLMEPVREAAGRL 53 (85)
T ss_dssp CTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHH
Confidence 3449999999999998888999999998876443
No 122
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.40 E-value=21 Score=24.64 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.5
Q ss_pred cChhhhhhhhhhcChhh--hHHHH
Q 031627 70 IAPEHVLKALEVLGFGE--YIEEV 91 (156)
Q Consensus 70 I~~edVl~AL~~LgF~~--yv~~l 91 (156)
=+++||..-|..+||++ |++..
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 56899999999999998 77654
No 123
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.28 E-value=54 Score=20.86 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=23.0
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 031627 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF 50 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eF 50 (156)
..+..+||.|++... -.|+.+++.-|.+++.++
T Consensus 19 aGVS~sTVSr~ln~~----~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 19 AKVSTATVSRALMNP----DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TTCCHHHHHHTTTCC----CCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 467788888877642 247888888777776654
No 124
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=28.18 E-value=1e+02 Score=23.95 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=54.8
Q ss_pred cccc--cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhh
Q 031627 11 KEDA--SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75 (156)
Q Consensus 11 ~dd~--~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edV 75 (156)
+++. -+|-+-+.|+.+.+. ++-|.|+-..-+.+....=+.-|.-.|...|..+||-+|.+.|+
T Consensus 20 ~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 20 IETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp -CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 5556 678889999999997 57788988888999999888888888999999999999999886
No 125
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=28.08 E-value=45 Score=30.71 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 34 ~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+++..++.+|.. |...|...+...|+++|++.||=.-
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl~~ 41 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLLKD 41 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHCCS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 467777777765 7788999999999999999998443
No 126
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=27.83 E-value=58 Score=25.93 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=38.4
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhh
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~ 81 (156)
.++...+.+.+++.+- .++.|+.++..+|.+.+.-=+..+.++-...+.-.+.++|+.+||...+..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 3444555555554442 368899999999988755322233333333333223457998888665543
No 127
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=27.00 E-value=85 Score=21.39 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCCccChhhhhhhhhhcCh-hhhHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCHHHHHHH
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALEVLGF-GEYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEAAAE 125 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~~LgF-~~yv~~l~~~l~~~k~~~~~r~k~~~k~~~~g~~eEel~~~ 125 (156)
.+....-.++.-.|+.+++..+|..+|+ .-=-..+...+..+- . -.+..++-+|.++.
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D-----~------d~dG~I~~~EF~~~ 102 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGD-----L------DGDGALNQTEFCVL 102 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHC-----S------SCSSSBCHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-----C------CCCCCCcHHHHHHH
Confidence 3555667778889999999999999996 322233444443221 1 12234788887554
No 128
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=26.45 E-value=1.4e+02 Score=19.45 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=8.4
Q ss_pred ccChhhhhhhhhh
Q 031627 69 TIAPEHVLKALEV 81 (156)
Q Consensus 69 TI~~edVl~AL~~ 81 (156)
+|+.+++..+|..
T Consensus 24 ~Is~~El~~~l~~ 36 (96)
T 1a4p_A 24 YLTKEDLRVLMEK 36 (96)
T ss_dssp SBCHHHHHHHHHH
T ss_pred eECHHHHHHHHHH
Confidence 6666666666653
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.23 E-value=56 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 53 LVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 53 ~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
-+..+|...|...++.+|+.+|+..|++
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 3444566677778888999999998873
No 130
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=26.23 E-value=1.3e+02 Score=19.10 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=44.3
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhcCCCccChhhhhhhhhhc--
Q 031627 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL-- 82 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~ls---------seAn~~a~~~~RKTI~~edVl~AL~~L-- 82 (156)
+.++..-|.++++..- .+-.|+-+ +|+.++. ..+....-.++.-+|+.+++..+|..+
T Consensus 5 ~~~~~~e~~~~~~~~d-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~ 73 (109)
T 1bu3_A 5 GILADADVAAALKACE-AADSFNYK----------AFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSA 73 (109)
T ss_dssp CSSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHST
T ss_pred ccCCHHHHHHHHHHhC-CCCcCcHH----------HHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcc
Confidence 3566778888888754 33445532 2333321 345566667788889999999999998
Q ss_pred -ChhhhHHHHHHHHH
Q 031627 83 -GFGEYIEEVYAAYE 96 (156)
Q Consensus 83 -gF~~yv~~l~~~l~ 96 (156)
|..---..+...+.
T Consensus 74 ~g~~~~~~~~~~~~~ 88 (109)
T 1bu3_A 74 GARALTDAETKAFLK 88 (109)
T ss_dssp TCCCCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 54322334444443
No 131
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=25.63 E-value=1.5e+02 Score=19.72 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHHH
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYE 96 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l~ 96 (156)
.+....-.++.-.|+.+++..+|..+|..-=-..+...+.
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 126 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIR 126 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3566666777778999999999998885422234444443
No 132
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.62 E-value=50 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHhhhcCCCccChhhhhhhhh
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
.|...|...+...|+++|++.||=
T Consensus 12 ~A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 12 MAFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp HHHHHHHHTTBSEECHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccHHHHHHHHH
Confidence 378889999999999999999974
No 133
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=25.31 E-value=40 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.9
Q ss_pred ccChhhhhhhhhhc--ChhhhHHHHH
Q 031627 69 TIAPEHVLKALEVL--GFGEYIEEVY 92 (156)
Q Consensus 69 TI~~edVl~AL~~L--gF~~yv~~l~ 92 (156)
.=+.+||..-|+.+ ||.+|.+...
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 46899999999998 7999987554
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.09 E-value=25 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 50 FI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
-|.-+...|...|...++.+|+.+|+..|++..
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344555667777777888899999998887654
No 135
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.05 E-value=1.4e+02 Score=22.78 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=40.5
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhcCh
Q 031627 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF 84 (156)
.++...+..+++..+. .++.++.++...|.+.+.--+..+-......+.. .+.|+.++|..++.....
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~--~~~i~~~~v~~~~~~~~~ 233 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG--HGLVNADNVFKIVDSPHP 233 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSBCHHHHHHHHTSCCH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHCCCCH
Confidence 3455666677765443 2567899998888887653332222222222221 246999999888876654
No 136
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=24.96 E-value=1.6e+02 Score=19.60 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
.+......++.-.|+.+++..+|..+|..---..+...+
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345555567777899999999999888653333444443
No 137
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.60 E-value=61 Score=25.00 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred ccCcH-HHHHHHHHhhCCCCccccHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCccChhhhhhhhh
Q 031627 14 ASLPK-ATMTKIIKEMLPADVRVARDA-QDLLIECCVEF----INLVSSESNEVCSREDKRTIAPEHVLKALE 80 (156)
Q Consensus 14 ~~LP~-A~V~riiKe~LP~~~~iskda-~~~i~~c~~eF----I~~lsseAn~~a~~~~RKTI~~edVl~AL~ 80 (156)
+.+|. .....|++..+. ...++.++ ...|...+.-| |..+...|...|...++.+|+.+|+..|++
T Consensus 207 i~~p~~~~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 207 IDAPDVKGREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred eCCcCHHHHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 34443 234445554432 34444443 33344332222 333445566677778888999999998873
No 138
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=24.38 E-value=48 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.8
Q ss_pred cChhhhhhhhhhc--ChhhhHHHHHH
Q 031627 70 IAPEHVLKALEVL--GFGEYIEEVYA 93 (156)
Q Consensus 70 I~~edVl~AL~~L--gF~~yv~~l~~ 93 (156)
=++++|..-|..+ |++.|++....
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~~ 32 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFER 32 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4789999999999 59999976643
No 139
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.23 E-value=1.4e+02 Score=26.76 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=41.0
Q ss_pred ccCcHHHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 14 ASLPKATMTKIIKEMLPA------DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 14 ~~LP~A~V~riiKe~LP~------~~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
+.+....|.+-+...++. ...+|..++.+|.. |...|..-+...|+++|++-||=.-
T Consensus 53 ~gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 53 LGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp HTCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 344455666666666532 35688888888876 6666778889999999999998543
No 140
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=24.14 E-value=42 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=20.5
Q ss_pred ccChhhhhhhhhhc--ChhhhHHHHH
Q 031627 69 TIAPEHVLKALEVL--GFGEYIEEVY 92 (156)
Q Consensus 69 TI~~edVl~AL~~L--gF~~yv~~l~ 92 (156)
.=+++||..-|+.+ ||+.|++...
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F~ 50 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLFA 50 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHHH
Confidence 46899999999999 9999987553
No 141
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.96 E-value=1.3e+02 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=29.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 33 ~~iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
..+|..++.+|.+ |...|...+...|+.+|++-||=.-
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 5678888888876 4555666688899999999998553
No 142
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=23.70 E-value=1.7e+02 Score=19.55 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=44.3
Q ss_pred cCcHHHHHHHHHhhCCC-CccccH-HHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHH
Q 031627 15 SLPKATMTKIIKEMLPA-DVRVAR-DAQDLLIECCVEF-INLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEV 91 (156)
Q Consensus 15 ~LP~A~V~riiKe~LP~-~~~isk-da~~~i~~c~~eF-I~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l 91 (156)
.++...|..+++..=++ +-.|+- |...++......- ...-...|....-.++.-.|+.+++..+|..+|..-=-..+
T Consensus 38 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~ 117 (143)
T 2obh_A 38 EPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 117 (143)
T ss_dssp CCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHH
Confidence 34566677777765332 233443 2223322211110 01112346666677778889999999999998864223344
Q ss_pred HHHHH
Q 031627 92 YAAYE 96 (156)
Q Consensus 92 ~~~l~ 96 (156)
...+.
T Consensus 118 ~~~~~ 122 (143)
T 2obh_A 118 QEMID 122 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 143
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.56 E-value=30 Score=20.46 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.5
Q ss_pred CccChhhhhhhhhhcChh
Q 031627 68 RTIAPEHVLKALEVLGFG 85 (156)
Q Consensus 68 KTI~~edVl~AL~~LgF~ 85 (156)
.++++++|..+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 457889999999999985
No 144
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=23.51 E-value=2.4e+02 Score=25.20 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=44.0
Q ss_pred cCcHHHHHHHHHhhC--CCCccccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhcCCCccC
Q 031627 15 SLPKATMTKIIKEML--PADVRVARDAQDLLIECCVEFI---------------------NLVSSESNEVCSREDKRTIA 71 (156)
Q Consensus 15 ~LP~A~V~riiKe~L--P~~~~iskda~~~i~~c~~eFI---------------------~~lsseAn~~a~~~~RKTI~ 71 (156)
.++...+.+.+.-+= --...++.++.+.|.+.....= ..|-..|-..|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 466666766665331 0146799999888887544321 12334566678888999999
Q ss_pred hhhhhhhhhh
Q 031627 72 PEHVLKALEV 81 (156)
Q Consensus 72 ~edVl~AL~~ 81 (156)
++||..|+.-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 145
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=22.50 E-value=1.3e+02 Score=19.00 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhcCCCccChhhhhhhhhhc
Q 031627 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLV---------SSESNEVCSREDKRTIAPEHVLKALEVL 82 (156)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eFI~~l---------sseAn~~a~~~~RKTI~~edVl~AL~~L 82 (156)
++..-|.++++..= .+-.|+-+ +|+.++ ...+....-.++.-+|+.+++..+|..+
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHK----------KFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHH----------HHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHH----------HHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 55667777877643 23344432 222222 1345666667778889999999999998
No 146
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=22.23 E-value=1.3e+02 Score=25.27 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=47.9
Q ss_pred hCCCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-ChhhhhhhhhhcChhhhHHHHHHHHHHHH
Q 031627 28 MLPADVR---VARDAQDLLIECCVEFINLVSSESNEVCSREDKRTI-APEHVLKALEVLGFGEYIEEVYAAYEQHK 99 (156)
Q Consensus 28 ~LP~~~~---iskda~~~i~~c~~eFI~~lsseAn~~a~~~~RKTI-~~edVl~AL~~LgF~~yv~~l~~~l~~~k 99 (156)
.+|...+ ++.|-.+-+...-+..-.|+.......-.... .. .=+..++-|+.+|+++|++.....+++|+
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~~--~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKGG--IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHCC--HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 4664342 77777777766666666666555555544432 22 24667889999999999999999998885
No 147
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.99 E-value=98 Score=18.22 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 58 An~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
+....-.++.-.|+.+++..+|..+|+.-=-..+...+
T Consensus 12 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 12 AFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp HHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34444566777899999999999998753333444433
No 148
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=21.77 E-value=4.2e+02 Score=23.45 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=23.2
Q ss_pred hcCCCccChhhhhhhhhhcChh-hhHHHHH
Q 031627 64 REDKRTIAPEHVLKALEVLGFG-EYIEEVY 92 (156)
Q Consensus 64 ~~~RKTI~~edVl~AL~~LgF~-~yv~~l~ 92 (156)
+.++++|+++++++--+..||+ |...++-
T Consensus 373 ~~~~~~l~G~~af~LyDTyGfP~dLt~eia 402 (465)
T 1yfs_A 373 EEGRKTLSGKEVFTAYDTYGFPVDLIDEIA 402 (465)
T ss_dssp HTTCCEECHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hcCCCcCCHHHHHhhhhccCCCHHHHHHHH
Confidence 3467789999999999999998 5665553
No 149
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.93 E-value=39 Score=20.30 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.9
Q ss_pred ccChhhhhhhhhhcChh
Q 031627 69 TIAPEHVLKALEVLGFG 85 (156)
Q Consensus 69 TI~~edVl~AL~~LgF~ 85 (156)
++++++|+.+++.+||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999986
No 150
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.89 E-value=1.3e+02 Score=19.19 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 58 An~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
+......++.-+|+.+++..+|..+|+.-=-..+...+
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33444567777899999999999998753233344433
No 151
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=20.61 E-value=1.6e+02 Score=19.69 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
.|....-.++.-+|+.+++..+|..+|..-=-..+...+
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 127 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 466667777888899999999999998542233444444
No 152
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.52 E-value=1e+02 Score=18.64 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHH
Q 031627 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (156)
Q Consensus 58 An~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (156)
+......++.-.|+.+++..+|..+|+.-=...+...+
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44455567777899999999999998753333444443
No 153
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.51 E-value=34 Score=21.85 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=12.6
Q ss_pred hhhhhhhhhcChhh
Q 031627 73 EHVLKALEVLGFGE 86 (156)
Q Consensus 73 edVl~AL~~LgF~~ 86 (156)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999984
No 154
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=20.41 E-value=2.1e+02 Score=19.61 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCccChhhhhhhhhhcChhhhHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCHHHHHHH
Q 031627 57 ESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEAAAE 125 (156)
Q Consensus 57 eAn~~a~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l~~~k~~~~~r~k~~~k~~~~g~~eEel~~~ 125 (156)
.+....-.++.-+|+.+++..+|..+|+.-=-..+...+..+. . .+..++-+|.+..
T Consensus 81 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d------d------~dg~i~~~eF~~~ 137 (173)
T 1alv_A 81 AIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS------D------EGGNMDFDNFISC 137 (173)
T ss_dssp HHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT------C------SSSCBCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc------C------CCCcCcHHHHHHH
Confidence 4566666778889999999999999987532334444443331 0 1234788886543
No 155
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=20.16 E-value=2.2e+02 Score=20.43 Aligned_cols=70 Identities=11% Similarity=0.225 Sum_probs=37.7
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCccChhhhhhhhhhcChh
Q 031627 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF-INLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (156)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskda~~~i~~c~~eF-I~~lsseAn~~a~~~~RKTI~~edVl~AL~~LgF~ 85 (156)
+..|....+.++-+=. ..-++.+.+...|....+.- +..| ..+......++.-+|+.+++..+|..+|+.
T Consensus 19 ~~~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 89 (197)
T 3pm8_A 19 HVELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQ 89 (197)
T ss_dssp SCCCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCC
Confidence 4455566666665422 12344444444443322211 1111 234445556777789999999999998875
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=20.02 E-value=3.5e+02 Score=21.84 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCC-CccccHHHHHHHHHHHHH----HHHHHHHHHHHHhhhc------------CCCccChhhhhhhhh
Q 031627 18 KATMTKIIKEMLPA-DVRVARDAQDLLIECCVE----FINLVSSESNEVCSRE------------DKRTIAPEHVLKALE 80 (156)
Q Consensus 18 ~A~V~riiKe~LP~-~~~iskda~~~i~~c~~e----FI~~lsseAn~~a~~~------------~RKTI~~edVl~AL~ 80 (156)
......|++..+.. +..++.+....|.+.+.- -|..|...|...+..+ ....|+.+|+..||+
T Consensus 284 ~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp HHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 34555566655432 456788877777765543 4445555555555444 445788888888876
Q ss_pred hcC
Q 031627 81 VLG 83 (156)
Q Consensus 81 ~Lg 83 (156)
...
T Consensus 364 ~~~ 366 (389)
T 3vfd_A 364 KIK 366 (389)
T ss_dssp HCC
T ss_pred HcC
Confidence 543
Done!