BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031628
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
          Length = 301

 Score = 29.3 bits (64), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 92  VFFLGAYRGLYILNWVYRYFTELHYVHW 119
           ++ LG Y GL ILN V +Y  + H  HW
Sbjct: 162 IYCLGGYDGLNILNSVEKY--DPHTGHW 187


>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
          Length = 280

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 72  LPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYIL 104
           LP+L L+++  N+     QY  +  A RG Y L
Sbjct: 197 LPELQLVEKFLNLPPRISQYNLYFNATRGFYCL 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.335    0.146    0.479 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,901,511
Number of Sequences: 62578
Number of extensions: 128897
Number of successful extensions: 410
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 2
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.7 bits)