Query 031628
Match_columns 156
No_of_seqs 110 out of 340
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 5.5E-62 1.2E-66 393.2 6.5 145 1-148 63-207 (212)
2 COG5196 ERD2 ER lumen protein 100.0 1.7E-52 3.6E-57 334.4 7.8 146 1-148 64-209 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 1E-45 2.2E-50 288.1 7.6 108 1-110 38-147 (147)
4 PF04193 PQ-loop: PQ loop repe 94.8 0.16 3.4E-06 33.0 6.3 55 56-110 2-56 (61)
5 PHA02246 hypothetical protein 74.6 34 0.00074 27.8 8.7 92 30-131 87-178 (192)
6 TIGR00951 2A43 Lysosomal Cysti 72.8 25 0.00054 28.9 7.9 46 64-109 12-64 (220)
7 smart00679 CTNS Repeated motif 69.3 4.2 9E-05 23.0 1.9 26 69-94 1-26 (32)
8 COG4095 Uncharacterized conser 57.6 73 0.0016 23.3 7.5 49 61-109 10-58 (89)
9 PF03083 MtN3_slv: Sugar efflu 19.1 1.9E+02 0.0041 19.6 3.6 38 68-109 15-52 (87)
10 COG4618 ArpD ABC-type protease 16.5 3.3E+02 0.0071 26.2 5.5 50 61-110 30-85 (580)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-62 Score=393.23 Aligned_cols=145 Identities=50% Similarity=0.907 Sum_probs=141.6
Q ss_pred CeEEehhHHHHHHHHHhhccccccccccccccceehhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhhHHHHHhh
Q 031628 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQR 80 (156)
Q Consensus 1 mKi~fi~~s~~iiylm~~~~~~~~TYd~~~D~f~~~~ll~p~~vLali~~~~~~~~eilWtFSi~LEsvAILPQL~mlqk 80 (156)
||++||++|.+++|+|++ |+|+|||+|+|||+++|+++||++||+++||++++.|++||||+|||||||||||+|+||
T Consensus 63 mki~fl~~t~~ivymi~~--k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~ 140 (212)
T KOG3106|consen 63 MKIAFLASTLWIVYMIRF--KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQK 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcccCceeEEEEehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 899999999999999999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhhhhhhhhccCcccchhHhHHHHHHHHHHhhhhheeeeeeccccc
Q 031628 81 TRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHWIPWISGLVQTLLYADFFYYYFDRYAVLSF 148 (156)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~i~~i~giiQt~ly~DFfy~Y~~~~~~~~~ 148 (156)
+||+|++|+||+|+||+||++|+.|||+|+.+|+ +++++++++|++||++||||||+|++++.+|..
T Consensus 141 tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~-~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~ 207 (212)
T KOG3106|consen 141 TGEAETITAHYLFALGLYRALYIANWIYRYVTED-FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKK 207 (212)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999998 569999999999999999999999999999976
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-52 Score=334.38 Aligned_cols=146 Identities=41% Similarity=0.715 Sum_probs=140.2
Q ss_pred CeEEehhHHHHHHHHHhhccccccccccccccceehhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhhHHHHHhh
Q 031628 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQR 80 (156)
Q Consensus 1 mKi~fi~~s~~iiylm~~~~~~~~TYd~~~D~f~~~~ll~p~~vLali~~~~~~~~eilWtFSi~LEsvAILPQL~mlqk 80 (156)
||++||+++.+|+++|+.+ +++||||..|+|+.+++++||+++|+++|+++++.|++||||+|||||||||||+|+||
T Consensus 64 Mki~FI~s~~yI~~lm~~~--~r~tYdk~lDtF~i~~ll~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~ 141 (214)
T COG5196 64 MKILFIGSQVYILFLMRFK--YRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQE 141 (214)
T ss_pred HHHHHHHHHHHHHHHHHhc--ccchHHHhhhhhhhhhhhhhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999994 79999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhhhhhhhhccCcccchhHhHHHHHHHHHHhhhhheeeeeeccccc
Q 031628 81 TRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHWIPWISGLVQTLLYADFFYYYFDRYAVLSF 148 (156)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~i~~i~giiQt~ly~DFfy~Y~~~~~~~~~ 148 (156)
.||.|++|+||+++||+||++|++|||+|+..+.+-.+-+++.+|++||++|.|||+.|++.+.+|..
T Consensus 142 ~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~ 209 (214)
T COG5196 142 AGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKS 209 (214)
T ss_pred cCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhhhhhcccc
Confidence 99999999999999999999999999999988855568899999999999999999999999999853
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=1e-45 Score=288.08 Aligned_cols=108 Identities=52% Similarity=1.038 Sum_probs=104.5
Q ss_pred CeEEehhHHHHHHHHHhhccccccccccccccceehhhHHHHHhhhhhhc--CCCchhHHHHHHHHHHHHHHhhhHHHHH
Q 031628 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLIN--ENFTFKEVMWTFSLYLEAVAILPQLVLL 78 (156)
Q Consensus 1 mKi~fi~~s~~iiylm~~~~~~~~TYd~~~D~f~~~~ll~p~~vLali~~--~~~~~~eilWtFSi~LEsvAILPQL~ml 78 (156)
||++++++|++++|+|+. ++|+||||++|+|+..++++||++||+++| +++++.|++||||+|||||||+|||+|+
T Consensus 38 ~k~~~i~~s~~iiyli~~--~~~~Ty~~~~D~f~~~~li~p~~vLa~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~ 115 (147)
T PF00810_consen 38 MKVFFIVSSLYIIYLIFF--KYKSTYDKEIDTFRLEYLIVPCFVLALIFHPLNSFFFLEILWTFSIYLESVAILPQLFML 115 (147)
T ss_pred HHHHHHHHHHHHHHhhhe--eehhhhhccccchhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 699999999999999976 699999999999999999999999999999 5688999999999999999999999999
Q ss_pred hhcCCcchhhHHHHHHHHHHHHHHHhhhhhhh
Q 031628 79 QRTRNIDNLTGQYVFFLGAYRGLYILNWVYRY 110 (156)
Q Consensus 79 qk~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry 110 (156)
||+||+|++|+||+++||+||++|++||++||
T Consensus 116 ~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 116 QKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999997
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=94.80 E-value=0.16 Score=33.03 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHhhcCCcchhhHHHHHHHHHHHHHHHhhhhhhh
Q 031628 56 KEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYRY 110 (156)
Q Consensus 56 ~eilWtFSi~LEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry 110 (156)
.+++...+..+.+++-+||+....|++.++.+..-++.......++.+++.+...
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999999999999999988888888888776653
No 5
>PHA02246 hypothetical protein
Probab=74.61 E-value=34 Score=27.83 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=50.1
Q ss_pred cccceehhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhhHHHHHhhcCCcchhhHHHHHHHHHHHHHHHhhhhhh
Q 031628 30 QDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYR 109 (156)
Q Consensus 30 ~D~f~~~~ll~p~~vLali~~~~~~~~eilWtFSi~LEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (156)
+|-|...+.++-++.+-++ .......+..=+-|+ -.|-.||...+.|++..|....-.-..+|..-++=..|-...
T Consensus 87 kd~f~~~fiiifSLllfll-~~~~evtQtVat~tI---iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt 162 (192)
T PHA02246 87 KDYFSIPFIIVFSLLLFLL-SDFTALTQTVATITI---ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT 162 (192)
T ss_pred cccccchHHHHHHHHHHHH-hhhHHHHHHHHHHHH---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh
Confidence 4555554555444333222 111223333334444 457899999999999988877666555665555444443322
Q ss_pred hhccCcccchhHhHHHHHHHHH
Q 031628 110 YFTELHYVHWIPWISGLVQTLL 131 (156)
Q Consensus 110 y~~~~~~~~~i~~i~giiQt~l 131 (156)
. .....+++++++..+
T Consensus 163 ---h---v~~hIiiTEf~N~iL 178 (192)
T PHA02246 163 ---H---TYVHIIATEFVNFVL 178 (192)
T ss_pred ---C---CcceeeHHHHHHHHH
Confidence 1 122334677777644
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=72.77 E-value=25 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=33.7
Q ss_pred HHHHHHHhhhHHHHHhhcCCcchhhHHHHH-------HHHHHHHHHHhhhhhh
Q 031628 64 LYLEAVAILPQLVLLQRTRNIDNLTGQYVF-------FLGAYRGLYILNWVYR 109 (156)
Q Consensus 64 i~LEsvAILPQL~mlqk~~~ve~lts~Yv~-------~LG~yR~ly~~nWi~r 109 (156)
.-.=+++-+||+....|++.+|.+.-.++. +.+.|-.+-..+|-.+
T Consensus 12 ~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~ 64 (220)
T TIGR00951 12 VAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64 (220)
T ss_pred HHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 334466889999999999999999888877 4455555555556555
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=69.29 E-value=4.2 Score=22.96 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=21.1
Q ss_pred HHhhhHHHHHhhcCCcchhhHHHHHH
Q 031628 69 VAILPQLVLLQRTRNIDNLTGQYVFF 94 (156)
Q Consensus 69 vAILPQL~mlqk~~~ve~lts~Yv~~ 94 (156)
++-+||.....|++.++.+-..+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 35789999999999999887666653
No 8
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=57.56 E-value=73 Score=23.29 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhHHHHHhhcCCcchhhHHHHHHHHHHHHHHHhhhhhh
Q 031628 61 TFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYR 109 (156)
Q Consensus 61 tFSi~LEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (156)
+.+--+-.+|.+||+.-.-|+++..+++-.....+...+++.++.=+-.
T Consensus 10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi 58 (89)
T COG4095 10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI 58 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566889999999999999999999888888888888866544333
No 9
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=19.14 E-value=1.9e+02 Score=19.60 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHhhhHHHHHhhcCCcchhhHHHHHHHHHHHHHHHhhhhhh
Q 031628 68 AVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYR 109 (156)
Q Consensus 68 svAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (156)
..+=+||+.-..|+|..|.+...-..+.- +...-|+.-
T Consensus 15 ~~spl~~i~~v~k~ks~~~~~~~~~~~~~----~~~~~W~~Y 52 (87)
T PF03083_consen 15 FLSPLPQIRQVIKTKSTGSVSFPPFLAMF----FNCVLWLIY 52 (87)
T ss_pred HHHHHHHHHHHHhCCCCCccceehhHHHh----hhccHhhhh
Confidence 34557999999999988888766555443 334557655
No 10
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=16.51 E-value=3.3e+02 Score=26.15 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhHHHHHhh------cCCcchhhHHHHHHHHHHHHHHHhhhhhhh
Q 031628 61 TFSLYLEAVAILPQLVLLQR------TRNIDNLTGQYVFFLGAYRGLYILNWVYRY 110 (156)
Q Consensus 61 tFSi~LEsvAILPQL~mlqk------~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry 110 (156)
.||-...-.+..|-|+|+|= ++.++++..--+.++|+|=+.-++.|+-+.
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~ 85 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSR 85 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999993 578999999999999999999999998764
Done!