Query 031628
Match_columns 156
No_of_seqs 110 out of 340
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fm8_C Cell invasion protein S 12.0 88 0.003 25.2 1.6 14 63-76 219-232 (240)
2 2fm9_A Cell invasion protein S 11.4 77 0.0026 25.2 1.1 12 65-76 195-206 (215)
3 3b0b_C CENP-X, centromere prot 10.2 92 0.0032 21.0 1.0 7 71-77 72-78 (81)
4 4dra_E Centromere protein X; D 9.5 1E+02 0.0035 21.1 1.0 7 71-77 76-82 (84)
5 2gsm_B Cytochrome C oxidase su 8.1 1E+02 0.0036 24.8 0.7 13 37-49 79-91 (262)
6 2k37_A Chlorosome protein A; b 6.6 1.6E+02 0.0054 19.0 0.9 12 59-70 26-37 (59)
7 3hb3_B Cytochrome C oxidase su 5.5 1.7E+02 0.0059 24.2 0.7 12 37-48 110-121 (298)
8 4b4a_A TATC, SEC-independent p 5.0 5.5E+02 0.019 20.3 3.4 30 36-66 189-218 (249)
9 1nig_A Hypothetical protein TA 4.9 5.6E+02 0.019 19.1 3.1 32 86-118 94-125 (152)
10 2yev_B Cytochrome C oxidase su 6.5 1.6E+02 0.0056 24.2 0.0 17 36-52 86-102 (337)
No 1
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=12.01 E-value=88 Score=25.24 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhHHH
Q 031628 63 SLYLEAVAILPQLV 76 (156)
Q Consensus 63 Si~LEsvAILPQL~ 76 (156)
|==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999985
No 2
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=11.40 E-value=77 Score=25.22 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHhhhHHH
Q 031628 65 YLEAVAILPQLV 76 (156)
Q Consensus 65 ~LEsvAILPQL~ 76 (156)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478899999985
No 3
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=10.20 E-value=92 Score=21.05 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.7
Q ss_pred hhhHHHH
Q 031628 71 ILPQLVL 77 (156)
Q Consensus 71 ILPQL~m 77 (156)
|+|||.|
T Consensus 72 i~pqLlL 78 (81)
T 3b0b_C 72 VLPQLLL 78 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6677765
No 4
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=9.47 E-value=1e+02 Score=21.08 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.8
Q ss_pred hhhHHHH
Q 031628 71 ILPQLVL 77 (156)
Q Consensus 71 ILPQL~m 77 (156)
|+|||.|
T Consensus 76 i~pQLlL 82 (84)
T 4dra_E 76 VLPQLLL 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6777765
No 5
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.12 E-value=1e+02 Score=24.81 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=7.6
Q ss_pred hhHHHHHhhhhhh
Q 031628 37 FLVLPCLLLALLI 49 (156)
Q Consensus 37 ~ll~p~~vLali~ 49 (156)
+.++|+++|.++.
T Consensus 79 WTiiP~iILi~la 91 (262)
T 2gsm_B 79 WTIVPIVILVAIG 91 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5566666665553
No 6
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=6.58 E-value=1.6e+02 Score=19.02 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 031628 59 MWTFSLYLEAVA 70 (156)
Q Consensus 59 lWtFSi~LEsvA 70 (156)
-|++|-++|+++
T Consensus 26 W~~vg~~le~~g 37 (59)
T 2k37_A 26 WETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHHTGGGT
T ss_pred hHHHHHHHHHHH
Confidence 489999999986
No 7
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=5.50 E-value=1.7e+02 Score=24.17 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=6.4
Q ss_pred hhHHHHHhhhhh
Q 031628 37 FLVLPCLLLALL 48 (156)
Q Consensus 37 ~ll~p~~vLali 48 (156)
+.++|+++|.++
T Consensus 110 WTiiP~iILi~L 121 (298)
T 3hb3_B 110 WTLVPVLILVAI 121 (298)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445566555544
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.03 E-value=5.5e+02 Score=20.26 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=22.9
Q ss_pred hhhHHHHHhhhhhhcCCCchhHHHHHHHHHH
Q 031628 36 FFLVLPCLLLALLINENFTFKEVMWTFSLYL 66 (156)
Q Consensus 36 ~~ll~p~~vLali~~~~~~~~eilWtFSi~L 66 (156)
.|.++.++++|.+++| .-+.+++.+.-+++
T Consensus 189 r~~iv~~~v~aAiiTP-D~~sq~llaiPl~l 218 (249)
T 4b4a_A 189 KYFIVIAFVIGAIIAP-DVSTQVLMAIPLLL 218 (249)
T ss_dssp HHHHHHHHHHHHHHCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-cHHHHHHHHHHHHH
Confidence 4777778889999999 66777777776555
No 9
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=4.87 E-value=5.6e+02 Score=19.07 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhccCcccc
Q 031628 86 NLTGQYVFFLGAYRGLYILNWVYRYFTELHYVH 118 (156)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~ 118 (156)
+=+|-|++ ++.+-.=-.+||+++.-++.+|.+
T Consensus 94 nk~s~Ymf-~A~sh~~~Av~~~~~m~edErFk~ 125 (152)
T 1nig_A 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKE 125 (152)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHH
Confidence 45677877 445556667999999877766654
No 10
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=6.54 E-value=1.6e+02 Score=24.21 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=12.3
Q ss_pred hhhHHHHHhhhhhhcCC
Q 031628 36 FFLVLPCLLLALLINEN 52 (156)
Q Consensus 36 ~~ll~p~~vLali~~~~ 52 (156)
.+.++|++++.++.-|+
T Consensus 86 ~wt~~P~~il~~l~~~s 102 (337)
T 2yev_B 86 VWTLIPLAIVFVLFGLT 102 (337)
Confidence 36688988887776554
Done!