Query 031628
Match_columns 156
No_of_seqs 110 out of 340
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 04:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 23.2 18 0.0013 23.0 1.8 16 37-52 65-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 14.7 28 0.002 22.6 1.2 16 37-52 81-96 (107)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 12.1 47 0.0034 21.0 1.8 16 37-52 75-90 (100)
4 d2fm9a1 a.257.1.1 (A:49-263) C 11.3 37 0.0027 25.2 1.1 12 65-76 195-206 (215)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 9.8 68 0.0049 20.0 1.9 14 37-50 66-79 (91)
6 d1jt6a2 a.121.1.1 (A:73-187) M 6.0 1.8E+02 0.013 18.5 2.8 32 100-131 80-111 (115)
7 d1niga_ a.25.2.1 (A:) Hypothet 5.0 2.6E+02 0.019 19.0 3.1 33 86-119 94-126 (148)
8 d1dq3a3 d.95.2.2 (A:129-226) P 4.4 1.6E+02 0.011 18.8 1.4 13 83-95 80-92 (98)
9 d1ekra_ d.58.21.1 (A:) Molybde 3.6 1.7E+02 0.012 20.2 1.1 22 80-101 98-120 (146)
10 d1s4ka_ a.35.1.6 (A:) Putative 3.5 72 0.0052 21.6 -1.0 12 141-152 36-47 (120)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.22 E-value=18 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=8.9
Q ss_pred hhHHHHHhhhhhhcCC
Q 031628 37 FLVLPCLLLALLINEN 52 (156)
Q Consensus 37 ~ll~p~~vLali~~~~ 52 (156)
.-++|+++|..+.-|+
T Consensus 65 WTiiP~lILi~ia~PS 80 (90)
T d1v54b2 65 WTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666665554444
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=14.70 E-value=28 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=8.7
Q ss_pred hhHHHHHhhhhhhcCC
Q 031628 37 FLVLPCLLLALLINEN 52 (156)
Q Consensus 37 ~ll~p~~vLali~~~~ 52 (156)
..++|+++|..+.-|+
T Consensus 81 WTviP~lIL~~laipS 96 (107)
T d3ehbb2 81 WTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666665554433
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.12 E-value=47 Score=20.99 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=9.8
Q ss_pred hhHHHHHhhhhhhcCC
Q 031628 37 FLVLPCLLLALLINEN 52 (156)
Q Consensus 37 ~ll~p~~vLali~~~~ 52 (156)
..++|+++|..+.-|+
T Consensus 75 WTviP~lILi~l~~pS 90 (100)
T d3dtub2 75 WTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577777776654443
No 4
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.28 E-value=37 Score=25.23 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHhhhHHH
Q 031628 65 YLEAVAILPQLV 76 (156)
Q Consensus 65 ~LEsvAILPQL~ 76 (156)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478899999985
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.79 E-value=68 Score=19.98 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=8.9
Q ss_pred hhHHHHHhhhhhhc
Q 031628 37 FLVLPCLLLALLIN 50 (156)
Q Consensus 37 ~ll~p~~vLali~~ 50 (156)
.-++|++++..+.-
T Consensus 66 WtiIP~iil~~iav 79 (91)
T d1fftb2 66 VWTVPILIIIFLAV 79 (91)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678777766543
No 6
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=5.97 E-value=1.8e+02 Score=18.49 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=17.3
Q ss_pred HHHHhhhhhhhhccCcccchhHhHHHHHHHHH
Q 031628 100 GLYILNWVYRYFTELHYVHWIPWISGLVQTLL 131 (156)
Q Consensus 100 ~ly~~nWi~ry~~~~~~~~~i~~i~giiQt~l 131 (156)
++-.+||+..++..++-.+.-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNINERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34567888887665432233444444455443
No 7
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=4.97 E-value=2.6e+02 Score=19.05 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhccCcccch
Q 031628 86 NLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHW 119 (156)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~ 119 (156)
+=+|-|++ ++.+-.=-.+||+++.-++.+|.+.
T Consensus 94 nk~slYmf-lArsh~~~Av~~~~~m~edErFk~~ 126 (148)
T d1niga_ 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKEI 126 (148)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45677877 4455566679999998777666543
No 8
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.36 E-value=1.6e+02 Score=18.80 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=10.2
Q ss_pred CcchhhHHHHHHH
Q 031628 83 NIDNLTGQYVFFL 95 (156)
Q Consensus 83 ~ve~lts~Yv~~L 95 (156)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 5678999998655
No 9
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=1.7e+02 Score=20.20 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.4
Q ss_pred hcC-CcchhhHHHHHHHHHHHHH
Q 031628 80 RTR-NIDNLTGQYVFFLGAYRGL 101 (156)
Q Consensus 80 k~~-~ve~lts~Yv~~LG~yR~l 101 (156)
||| |-|.+|+--+.+|.+|=-+
T Consensus 98 kTGVEMEALtavsva~LTiYDM~ 120 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYDMC 120 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHHHH
Confidence 566 8899999999999998543
No 10
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=3.46 E-value=72 Score=21.64 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=9.3
Q ss_pred eeecccccceEE
Q 031628 141 DRYAVLSFPIFV 152 (156)
Q Consensus 141 ~~~~~~~~~i~~ 152 (156)
+++-+|+++||-
T Consensus 36 QqWE~Gd~~IP~ 47 (120)
T d1s4ka_ 36 QRWEAGDIPISP 47 (120)
T ss_dssp HHHHHTSSCCCH
T ss_pred HHHHcCCCCCCH
Confidence 577888888883
Done!