Query 031629
Match_columns 156
No_of_seqs 145 out of 730
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 3.5E-35 7.6E-40 212.1 8.0 104 18-121 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 100.0 4.2E-31 9.2E-36 188.6 6.7 99 20-119 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 73.8 2 4.3E-05 32.7 1.5 16 82-97 63-78 (139)
4 PF04749 PLAC8: PLAC8 family; 50.0 11 0.00024 25.9 1.6 22 100-121 14-35 (106)
5 PF06570 DUF1129: Protein of u 43.7 30 0.00066 27.3 3.4 18 79-96 189-206 (206)
6 TIGR01571 A_thal_Cys_rich unch 38.7 20 0.00043 25.4 1.5 16 84-102 28-43 (104)
7 PF14714 KH_dom-like: KH-domai 32.7 34 0.00073 23.2 1.8 20 79-98 56-75 (80)
8 KOG3657 Mitochondrial DNA poly 31.3 27 0.00059 34.1 1.5 17 81-97 250-266 (1075)
9 PF12273 RCR: Chitin synthesis 30.5 23 0.0005 25.9 0.7 12 83-94 21-32 (130)
10 PF06679 DUF1180: Protein of u 28.5 23 0.00049 27.6 0.4 20 81-100 117-138 (163)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=100.00 E-value=3.5e-35 Score=212.10 Aligned_cols=104 Identities=39% Similarity=0.790 Sum_probs=95.2
Q ss_pred CCCCcCCccccCCchhhhhccccchHHHHHHHHHhcCCCCccchhHHHHHHHHHhhhcccccchhHHHHHHHHhCCCCCC
Q 031629 18 GPWSSGLCDCFSDCSTCCLTYWCPWITFGRIAEIVDQGSSSCGVNCALYFILAWLTGCSCLLSCGYRSKMRHQYMLKDSP 97 (156)
Q Consensus 18 ~~W~~GL~~C~~D~~~C~~~~~CPC~~~g~~~~rl~~g~~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~rygI~Gs~ 97 (156)
++|++|||||++|+++|++++||||+++|+|++|++++..+|...++++.+++.+.++.+++.+.+|++||+||||+|+.
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999999977678887776666666566777889999999999999999999
Q ss_pred ccchhHhhcChhHHhhHhHHHHHh
Q 031629 98 CGDCLVHVFCELCALCQEYRELKS 121 (156)
Q Consensus 98 ~~Dc~~~~cC~~Cal~Q~~REl~~ 121 (156)
++|+++++||++|+|+|++||||.
T Consensus 81 ~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 81 CDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred cccchHHHHhhhHHHHHHHHHHhC
Confidence 999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.97 E-value=4.2e-31 Score=188.60 Aligned_cols=99 Identities=43% Similarity=0.924 Sum_probs=84.0
Q ss_pred CCcCCccccCCchhhhhccccchHHHHHHHHHhcCCC-------CccchhHHHHHHHHHhhhcccccchhHHHHHHHHhC
Q 031629 20 WSSGLCDCFSDCSTCCLTYWCPWITFGRIAEIVDQGS-------SSCGVNCALYFILAWLTGCSCLLSCGYRSKMRHQYM 92 (156)
Q Consensus 20 W~~GL~~C~~D~~~C~~~~~CPC~~~g~~~~rl~~g~-------~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~ryg 92 (156)
|++|||||++|+++|++++||||++++++++|++.+. ..|....+++.++.++ ++.+++.+.+|++||+|||
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~-~l~~~~~~~~R~~iR~ry~ 79 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACL-GLGWCYGCSLRQQIRERYG 79 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHH-HHhHhhhhhHHHHHHHHhC
Confidence 9999999999999999999999999999999998754 3444444444333222 3456688999999999999
Q ss_pred CCCCCccchhHhhcChhHHhhHhHHHH
Q 031629 93 LKDSPCGDCLVHVFCELCALCQEYREL 119 (156)
Q Consensus 93 I~Gs~~~Dc~~~~cC~~Cal~Q~~REl 119 (156)
|+|+.++|+++++||+||||+|++|||
T Consensus 80 I~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 80 IQGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred CCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=73.82 E-value=2 Score=32.66 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=10.1
Q ss_pred hHHHHHHHHhCCCCCC
Q 031629 82 GYRSKMRHQYMLKDSP 97 (156)
Q Consensus 82 ~~R~~iR~rygI~Gs~ 97 (156)
.+|..||.||+|+.+.
T Consensus 63 ~mRq~IRdKY~l~k~e 78 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKKE 78 (139)
T ss_dssp HHHHHHHHHHT-----
T ss_pred HHHHHHHhhccccccc
Confidence 4799999999999864
No 4
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=50.02 E-value=11 Score=25.92 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=10.5
Q ss_pred chhHhhcChhHHhhHhHHHHHh
Q 031629 100 DCLVHVFCELCALCQEYRELKS 121 (156)
Q Consensus 100 Dc~~~~cC~~Cal~Q~~REl~~ 121 (156)
-++.++||+++++.|..+.++.
T Consensus 14 ~c~~~~~cPc~~~~~~~~~l~~ 35 (106)
T PF04749_consen 14 SCCLACFCPCCSFGQNAERLGD 35 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444555555555444443
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.72 E-value=30 Score=27.26 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.0
Q ss_pred cchhHHHHHHHHhCCCCC
Q 031629 79 LSCGYRSKMRHQYMLKDS 96 (156)
Q Consensus 79 ~~~~~R~~iR~rygI~Gs 96 (156)
.....|.-+|+||||+|+
T Consensus 189 i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 189 IAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 345689999999999986
No 6
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=38.74 E-value=20 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=7.9
Q ss_pred HHHHHHHhCCCCCCccchh
Q 031629 84 RSKMRHQYMLKDSPCGDCL 102 (156)
Q Consensus 84 R~~iR~rygI~Gs~~~Dc~ 102 (156)
=.++.++++ +...+|.
T Consensus 28 ~g~~~~~~~---~~~~~C~ 43 (104)
T TIGR01571 28 FGQIAETLG---TFAGECL 43 (104)
T ss_pred HHHHHHHhC---CCCCchh
Confidence 345555555 5444544
No 7
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=32.70 E-value=34 Score=23.20 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHhCCCCCCc
Q 031629 79 LSCGYRSKMRHQYMLKDSPC 98 (156)
Q Consensus 79 ~~~~~R~~iR~rygI~Gs~~ 98 (156)
|.-.+..+||+.||++|+++
T Consensus 56 Y~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHCCCCceeE
Confidence 44568899999999999875
No 8
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=31.29 E-value=27 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=15.0
Q ss_pred hhHHHHHHHHhCCCCCC
Q 031629 81 CGYRSKMRHQYMLKDSP 97 (156)
Q Consensus 81 ~~~R~~iR~rygI~Gs~ 97 (156)
..-|.+||+.|+|+||-
T Consensus 250 sfDRaRirEeY~i~~Sk 266 (1075)
T KOG3657|consen 250 SFDRARIREEYNINGSK 266 (1075)
T ss_pred cchHHHHHHHHhccccc
Confidence 46799999999999984
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.49 E-value=23 Score=25.92 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=5.3
Q ss_pred HHHHHHHHhCCC
Q 031629 83 YRSKMRHQYMLK 94 (156)
Q Consensus 83 ~R~~iR~rygI~ 94 (156)
.+.+-|+|.|++
T Consensus 21 ~~~rRR~r~G~~ 32 (130)
T PF12273_consen 21 CHNRRRRRRGLQ 32 (130)
T ss_pred HHHHHHhhcCCC
Confidence 333334443664
No 10
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=28.53 E-value=23 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=12.9
Q ss_pred hhHHHHHH--HHhCCCCCCccc
Q 031629 81 CGYRSKMR--HQYMLKDSPCGD 100 (156)
Q Consensus 81 ~~~R~~iR--~rygI~Gs~~~D 100 (156)
+..|++.| +||||-++..++
T Consensus 117 ~R~r~~~rktRkYgvl~~~~~~ 138 (163)
T PF06679_consen 117 FRLRRRNRKTRKYGVLTTRAEN 138 (163)
T ss_pred HhhccccccceeecccCCCccc
Confidence 34555445 699999876444
Done!