Query 031629
Match_columns 156
No_of_seqs 145 out of 730
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 85.2 0.4 1.4E-05 29.0 1.7 12 82-93 38-49 (49)
2 3rk3_E Complexin-1; snare prot 83.6 0.54 1.8E-05 29.8 1.8 14 82-95 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 81.4 0.7 2.4E-05 30.5 1.8 14 82-95 45-58 (79)
4 2kmz_A Tumor necrosis factor r 17.2 97 0.0033 18.6 2.4 26 8-34 3-28 (53)
5 2oq9_A Minicollagen-5; disulfi 14.4 92 0.0032 15.8 1.6 13 2-14 1-13 (26)
6 4egd_A Uncharacterized protein 11.0 96 0.0033 24.7 1.4 14 83-96 193-206 (260)
7 3k6g_A Telomeric repeat-bindin 10.0 1.2E+02 0.0041 21.1 1.5 13 82-94 75-87 (111)
8 1yfb_A Transition state regula 8.7 1.8E+02 0.0062 17.6 1.9 14 83-96 26-39 (59)
9 2e6i_A Tyrosine-protein kinase 8.2 2.6E+02 0.0088 17.4 2.4 28 3-30 3-30 (64)
10 4dcu_A GTP-binding protein ENG 7.4 2.1E+02 0.0074 23.6 2.3 21 79-99 429-449 (456)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=85.23 E-value=0.4 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=10.7
Q ss_pred hHHHHHHHHhCC
Q 031629 82 GYRSKMRHQYML 93 (156)
Q Consensus 82 ~~R~~iR~rygI 93 (156)
.+|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 379999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=83.56 E-value=0.54 Score=29.77 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.8
Q ss_pred hHHHHHHHHhCCCC
Q 031629 82 GYRSKMRHQYMLKD 95 (156)
Q Consensus 82 ~~R~~iR~rygI~G 95 (156)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 47999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=81.42 E-value=0.7 Score=30.53 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.8
Q ss_pred hHHHHHHHHhCCCC
Q 031629 82 GYRSKMRHQYMLKD 95 (156)
Q Consensus 82 ~~R~~iR~rygI~G 95 (156)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 47999999999985
No 4
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=17.16 E-value=97 Score=18.63 Aligned_cols=26 Identities=31% Similarity=0.785 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCcCCccccCCchhh
Q 031629 8 NQEFDPKATEGPWSSGLCDCFSDCSTC 34 (156)
Q Consensus 8 v~~~p~~~~~~~W~~GL~~C~~D~~~C 34 (156)
|..+-+-+..+.|+.+|=-| -|+.+|
T Consensus 3 ~p~~~pC~~GsswS~DLdKC-mdcs~C 28 (53)
T 2kmz_A 3 APGTAPCSRGSSWSADLDKC-MDCASC 28 (53)
T ss_dssp CSSCCSSCSSCBCCTTTTCC-BCSTTC
T ss_pred CCCcCcCCCCcccchhhhhh-hccccC
Confidence 33444456788999999777 445555
No 5
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=14.43 E-value=92 Score=15.79 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 031629 2 SSSNYPNQEFDPK 14 (156)
Q Consensus 2 ~~~~~~v~~~p~~ 14 (156)
++|+.||+.-|.-
T Consensus 1 apmqapvqaapac 13 (26)
T 2oq9_A 1 APMQAPVQAAPAC 13 (26)
T ss_dssp CCCCCCCCCCSSC
T ss_pred CCccchhhhhHHH
Confidence 4788888877754
No 6
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=10.96 E-value=96 Score=24.67 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCCC
Q 031629 83 YRSKMRHQYMLKDS 96 (156)
Q Consensus 83 ~R~~iR~rygI~Gs 96 (156)
--.++|+||+|+-.
T Consensus 193 NVKQLRkrY~IpT~ 206 (260)
T 4egd_A 193 NVQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred hHHHHHHhcCCCCC
Confidence 35789999999854
No 7
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=10.02 E-value=1.2e+02 Score=21.05 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=11.0
Q ss_pred hHHHHHHHHhCCC
Q 031629 82 GYRSKMRHQYMLK 94 (156)
Q Consensus 82 ~~R~~iR~rygI~ 94 (156)
.+|.++|+|||=+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 4899999999944
No 8
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=8.73 E-value=1.8e+02 Score=17.57 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCCCC
Q 031629 83 YRSKMRHQYMLKDS 96 (156)
Q Consensus 83 ~R~~iR~rygI~Gs 96 (156)
.=.+||+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 44689999999854
No 9
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.17 E-value=2.6e+02 Score=17.44 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCccccCC
Q 031629 3 SSNYPNQEFDPKATEGPWSSGLCDCFSD 30 (156)
Q Consensus 3 ~~~~~v~~~p~~~~~~~W~~GL~~C~~D 30 (156)
+.+.+....-...+.+-|..|-+.||.-
T Consensus 3 ~~s~~N~~ll~~yHPg~~~~GkW~CC~q 30 (64)
T 2e6i_A 3 SGSSGNNSLVPKYHPNFWMDGKWRCCSQ 30 (64)
T ss_dssp CCCCCCCSSCCEECSSCBCSSSBSSSCC
T ss_pred cccccChhhhhhcCCCceeCCeECCCCC
Confidence 4455555554667889999999999864
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=7.35 E-value=2.1e+02 Score=23.57 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHhCCCCCCcc
Q 031629 79 LSCGYRSKMRHQYMLKDSPCG 99 (156)
Q Consensus 79 ~~~~~R~~iR~rygI~Gs~~~ 99 (156)
|.-.+..+||+.||++|+++.
T Consensus 429 y~r~l~~~~r~~~~~~g~p~~ 449 (456)
T 4dcu_A 429 YERFLENRIRDAFGFEGTPIK 449 (456)
T ss_dssp HHHHHHHHHHHHHCCTTCCCE
T ss_pred HHHHHHHHHHHhCCCCceeEE
Confidence 334567789999999999864
Done!