Query 031629
Match_columns 156
No_of_seqs 145 out of 730
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031629.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031629hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 20.9 27 0.002 21.2 2.3 21 79-99 53-74 (81)
2 d2p7vb1 a.4.13.2 (B:546-613) S 9.3 75 0.0054 18.4 1.8 15 82-96 9-23 (68)
3 d1nexa1 a.157.1.1 (A:116-185) 8.6 81 0.0059 18.3 1.8 16 81-96 45-60 (70)
4 d2csba2 a.60.2.4 (A:294-350) T 8.5 70 0.0051 17.6 1.3 10 86-95 7-16 (57)
5 d1tjla2 g.39.1.13 (A:111-151) 7.7 71 0.0052 16.6 1.1 15 108-122 23-37 (41)
6 d1ku3a_ a.4.13.2 (A:) Sigma70 7.6 99 0.0072 17.3 1.8 16 81-96 11-26 (61)
7 d1ttya_ a.4.13.2 (A:) Sigma70 7.3 99 0.0072 18.7 1.8 16 81-96 21-36 (87)
8 d2odgc1 a.140.1.1 (C:2-47) Inn 6.7 1.3E+02 0.0093 16.3 1.9 16 86-101 13-28 (46)
9 d2dsxa1 g.41.5.1 (A:1-52) Rubr 6.7 64 0.0046 18.0 0.5 24 90-113 21-45 (52)
10 d1z1va1 a.60.1.2 (A:33-102) St 6.4 1.5E+02 0.011 17.4 2.2 18 82-100 23-40 (70)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.90 E-value=27 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.4
Q ss_pred cchhHHHHHHHH-hCCCCCCcc
Q 031629 79 LSCGYRSKMRHQ-YMLKDSPCG 99 (156)
Q Consensus 79 ~~~~~R~~iR~r-ygI~Gs~~~ 99 (156)
|.-.+..+||++ ||++|.++.
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi~ 74 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPIF 74 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCE
T ss_pred HHHHHHHHHHHHhCCCCccCEE
Confidence 344678899997 999998763
No 2
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=9.25 E-value=75 Score=18.37 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=12.3
Q ss_pred hHHHHHHHHhCCCCC
Q 031629 82 GYRSKMRHQYMLKDS 96 (156)
Q Consensus 82 ~~R~~iR~rygI~Gs 96 (156)
..|.-|+.+|||.+.
T Consensus 9 rE~~Ii~~rfGl~~~ 23 (68)
T d2p7vb1 9 REAKVLRMRFGIDMN 23 (68)
T ss_dssp HHHHHHHHHTTTTSS
T ss_pred HHHHHHHHHcCCCCC
Confidence 567789999999864
No 3
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.57 E-value=81 Score=18.31 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhCCCCC
Q 031629 81 CGYRSKMRHQYMLKDS 96 (156)
Q Consensus 81 ~~~R~~iR~rygI~Gs 96 (156)
...-.+||+.+||+..
T Consensus 45 gkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 45 GRSPEEIRRTFNIVND 60 (70)
T ss_dssp TCCHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHhCCCCC
Confidence 3567799999999964
No 4
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.50 E-value=70 Score=17.62 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=8.3
Q ss_pred HHHHHhCCCC
Q 031629 86 KMRHQYMLKD 95 (156)
Q Consensus 86 ~iR~rygI~G 95 (156)
++..||||+.
T Consensus 7 klqdrygire 16 (57)
T d2csba2 7 KLQDRYGIRE 16 (57)
T ss_dssp HHHHHHCCCH
T ss_pred ehhhhhccHH
Confidence 6788999994
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=7.68 E-value=71 Score=16.64 Aligned_cols=15 Identities=27% Similarity=0.837 Sum_probs=10.0
Q ss_pred hhHHhhHhHHHHHhc
Q 031629 108 ELCALCQEYRELKSR 122 (156)
Q Consensus 108 ~~Cal~Q~~REl~~r 122 (156)
.-|+-||+.+|-+.+
T Consensus 23 ~~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 23 DLCIDCKTLAEIREK 37 (41)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 356777877776654
No 6
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=7.63 E-value=99 Score=17.32 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=12.7
Q ss_pred hhHHHHHHHHhCCCCC
Q 031629 81 CGYRSKMRHQYMLKDS 96 (156)
Q Consensus 81 ~~~R~~iR~rygI~Gs 96 (156)
-..|.-|+.+|||.+.
T Consensus 11 ~rer~Ii~~ryGl~~~ 26 (61)
T d1ku3a_ 11 EREAMVLKMRKGLIDG 26 (61)
T ss_dssp HHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3578889999999764
No 7
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=7.29 E-value=99 Score=18.68 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.0
Q ss_pred hhHHHHHHHHhCCCCC
Q 031629 81 CGYRSKMRHQYMLKDS 96 (156)
Q Consensus 81 ~~~R~~iR~rygI~Gs 96 (156)
-..|.-|+.+|||.+.
T Consensus 21 ~rE~~Ii~~rfGl~~~ 36 (87)
T d1ttya_ 21 PREAMVLRMRYGLLDG 36 (87)
T ss_dssp HHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4677889999999764
No 8
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.72 E-value=1.3e+02 Score=16.29 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHhCCCCCCccch
Q 031629 86 KMRHQYMLKDSPCGDC 101 (156)
Q Consensus 86 ~iR~rygI~Gs~~~Dc 101 (156)
++-++|||+-.++-|-
T Consensus 13 ~lL~~y~I~HGPvVds 28 (46)
T d2odgc1 13 TLLRRYNIPHGPVVGS 28 (46)
T ss_dssp HHHHHTTCCCCCCCHH
T ss_pred HHHHHhCCCCCCcccc
Confidence 3456899998776554
No 9
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=6.70 E-value=64 Score=17.97 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.6
Q ss_pred HhCCC-CCCccchhHhhcChhHHhh
Q 031629 90 QYMLK-DSPCGDCLVHVFCELCALC 113 (156)
Q Consensus 90 rygI~-Gs~~~Dc~~~~cC~~Cal~ 113 (156)
+.||. |+.++|.=..|.|+-|...
T Consensus 21 ~~gi~pGT~F~~LP~~w~CP~C~a~ 45 (52)
T d2dsxa1 21 DSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp GGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ccCCCCCCCHHHCCCCCCCcCCCCc
Confidence 45665 7889999899999888653
No 10
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.43 E-value=1.5e+02 Score=17.40 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=13.7
Q ss_pred hHHHHHHHHhCCCCCCccc
Q 031629 82 GYRSKMRHQYMLKDSPCGD 100 (156)
Q Consensus 82 ~~R~~iR~rygI~Gs~~~D 100 (156)
..+.+|| +++|.|+.+..
T Consensus 23 ~l~~~lr-~n~I~Gd~L~e 40 (70)
T d1z1va1 23 PLCQRLR-ENDIVGDLLPE 40 (70)
T ss_dssp HHHHHHH-HTTCCTTTGGG
T ss_pred hHHHHHH-HcCCchhhhhH
Confidence 3688888 68999997543
Done!