Query 031630
Match_columns 156
No_of_seqs 200 out of 1539
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.8 4.5E-20 9.8E-25 134.9 7.4 76 77-155 44-119 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.8 1E-19 2.2E-24 128.6 9.0 72 83-156 2-73 (114)
3 KOG0907 Thioredoxin [Posttrans 99.8 2.6E-19 5.7E-24 125.1 7.7 73 83-156 7-79 (106)
4 PHA02278 thioredoxin-like prot 99.8 1.6E-18 3.5E-23 120.6 8.7 72 81-156 2-77 (103)
5 cd02985 TRX_CDSP32 TRX family, 99.8 2.6E-18 5.7E-23 118.9 9.1 72 82-156 2-76 (103)
6 cd02986 DLP Dim1 family, Dim1- 99.8 2.9E-18 6.4E-23 120.7 8.7 72 83-156 2-73 (114)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 5.4E-18 1.2E-22 116.3 9.4 74 77-155 3-76 (101)
8 PLN00410 U5 snRNP protein, DIM 99.8 4.3E-18 9.4E-23 124.5 8.6 75 77-153 5-79 (142)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.7 1E-17 2.2E-22 118.3 9.7 78 76-155 10-88 (113)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.3E-17 2.8E-22 114.8 9.3 74 78-155 4-77 (104)
11 cd02948 TRX_NDPK TRX domain, T 99.7 2E-17 4.4E-22 114.2 9.2 72 79-155 3-75 (102)
12 cd02956 ybbN ybbN protein fami 99.7 2.3E-17 4.9E-22 111.9 8.6 69 85-155 2-70 (96)
13 cd02999 PDI_a_ERp44_like PDIa 99.7 6E-17 1.3E-21 111.8 8.1 68 85-155 8-76 (100)
14 COG3118 Thioredoxin domain-con 99.7 5E-17 1.1E-21 130.3 8.5 76 77-154 25-100 (304)
15 cd02989 Phd_like_TxnDC9 Phosdu 99.7 1.1E-16 2.4E-21 112.8 9.1 76 76-156 5-80 (113)
16 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.8E-16 3.8E-21 110.1 9.1 74 77-155 3-82 (108)
17 cd02962 TMX2 TMX2 family; comp 99.7 2.5E-16 5.4E-21 116.6 10.1 78 75-155 28-112 (152)
18 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.7E-16 5.8E-21 108.7 8.9 74 78-155 3-78 (109)
19 KOG0908 Thioredoxin-like prote 99.7 5.1E-17 1.1E-21 127.3 5.8 78 76-156 2-79 (288)
20 PF00085 Thioredoxin: Thioredo 99.7 3.1E-16 6.8E-21 106.6 8.5 71 82-155 5-75 (103)
21 PTZ00051 thioredoxin; Provisio 99.7 6E-16 1.3E-20 105.1 9.0 74 77-155 2-75 (98)
22 cd02957 Phd_like Phosducin (Ph 99.7 3.8E-16 8.2E-21 109.7 7.5 76 76-155 5-80 (113)
23 cd02994 PDI_a_TMX PDIa family, 99.7 8.4E-16 1.8E-20 105.2 9.0 72 77-155 3-75 (101)
24 cd03065 PDI_b_Calsequestrin_N 99.6 7E-16 1.5E-20 110.1 8.4 75 77-155 11-91 (120)
25 PRK09381 trxA thioredoxin; Pro 99.6 1E-15 2.2E-20 106.2 9.1 76 76-155 4-79 (109)
26 cd02963 TRX_DnaJ TRX domain, D 99.6 4.2E-16 9E-21 109.3 6.9 72 82-155 10-83 (111)
27 cd02965 HyaE HyaE family; HyaE 99.6 6.1E-16 1.3E-20 108.8 7.7 71 82-156 16-88 (111)
28 cd03001 PDI_a_P5 PDIa family, 99.6 1.2E-15 2.7E-20 104.1 8.9 74 78-155 3-76 (103)
29 cd02984 TRX_PICOT TRX domain, 99.6 1.4E-15 3E-20 103.0 8.7 71 83-155 2-72 (97)
30 PRK10996 thioredoxin 2; Provis 99.6 2.1E-15 4.6E-20 109.9 9.0 70 82-155 41-110 (139)
31 cd03005 PDI_a_ERp46 PDIa famil 99.6 1.9E-15 4E-20 103.1 8.2 72 78-155 3-77 (102)
32 cd03000 PDI_a_TMX3 PDIa family 99.6 2.3E-15 5.1E-20 103.9 7.8 68 84-156 7-77 (104)
33 cd02952 TRP14_like Human TRX-r 99.6 2.7E-15 5.8E-20 106.9 8.0 76 79-156 5-95 (119)
34 cd02997 PDI_a_PDIR PDIa family 99.6 6.8E-15 1.5E-19 100.5 8.9 73 78-155 3-79 (104)
35 cd02950 TxlA TRX-like protein 99.6 3.8E-15 8.2E-20 109.0 8.0 68 84-155 11-80 (142)
36 cd02998 PDI_a_ERp38 PDIa famil 99.6 7.1E-15 1.5E-19 100.3 8.4 74 78-155 3-79 (105)
37 cd02993 PDI_a_APS_reductase PD 99.6 1.1E-14 2.4E-19 101.5 9.3 77 77-155 3-82 (109)
38 PTZ00443 Thioredoxin domain-co 99.6 7.4E-15 1.6E-19 115.0 8.9 79 76-155 31-110 (224)
39 cd02987 Phd_like_Phd Phosducin 99.6 8.3E-15 1.8E-19 110.8 8.8 80 74-156 61-140 (175)
40 cd02953 DsbDgamma DsbD gamma f 99.6 6.8E-15 1.5E-19 101.4 7.4 68 84-155 2-76 (104)
41 TIGR01068 thioredoxin thioredo 99.6 1.7E-14 3.7E-19 97.5 8.7 70 83-155 3-72 (101)
42 cd02992 PDI_a_QSOX PDIa family 99.6 2E-14 4.4E-19 101.3 8.8 75 77-155 3-82 (114)
43 cd02949 TRX_NTR TRX domain, no 99.6 2.5E-14 5.4E-19 97.6 8.6 68 85-155 4-71 (97)
44 TIGR01126 pdi_dom protein disu 99.6 2.5E-14 5.4E-19 97.1 8.4 69 83-155 3-73 (102)
45 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 2.4E-14 5.2E-19 97.6 8.3 72 78-154 3-76 (104)
46 cd02975 PfPDO_like_N Pyrococcu 99.5 3.5E-14 7.6E-19 100.0 8.2 60 95-155 20-79 (113)
47 cd02961 PDI_a_family Protein D 99.5 6.7E-14 1.5E-18 93.8 8.5 69 83-155 5-75 (101)
48 cd02951 SoxW SoxW family; SoxW 99.5 8.9E-14 1.9E-18 98.8 7.7 61 95-155 11-88 (125)
49 cd02959 ERp19 Endoplasmic reti 99.5 9.4E-14 2E-18 98.5 6.9 71 85-155 7-80 (117)
50 TIGR00424 APS_reduc 5'-adenyly 99.5 3.4E-13 7.5E-18 115.2 9.6 78 76-155 352-432 (463)
51 KOG0190 Protein disulfide isom 99.4 2.5E-13 5.3E-18 116.1 6.5 75 75-154 25-102 (493)
52 PLN02309 5'-adenylylsulfate re 99.4 1.1E-12 2.3E-17 112.1 10.2 78 76-155 346-426 (457)
53 cd02988 Phd_like_VIAF Phosduci 99.4 8E-13 1.7E-17 101.4 7.2 77 74-156 81-157 (192)
54 TIGR01130 ER_PDI_fam protein d 99.4 1.3E-12 2.7E-17 110.2 8.9 74 77-155 3-79 (462)
55 TIGR01295 PedC_BrcD bacterioci 99.4 1.5E-12 3.2E-17 93.0 7.8 72 77-155 8-94 (122)
56 TIGR00411 redox_disulf_1 small 99.4 1.2E-12 2.6E-17 85.8 6.8 57 100-156 2-58 (82)
57 cd02947 TRX_family TRX family; 99.4 2E-12 4.4E-17 84.8 7.7 66 85-155 2-67 (93)
58 PRK00293 dipZ thiol:disulfide 99.4 2.8E-12 6.2E-17 112.5 10.1 79 76-155 453-538 (571)
59 PHA02125 thioredoxin-like prot 99.4 1.5E-12 3.2E-17 85.2 6.1 50 101-156 2-51 (75)
60 cd03008 TryX_like_RdCVF Trypar 99.4 1.9E-12 4.1E-17 95.3 7.3 47 96-142 24-78 (146)
61 PTZ00102 disulphide isomerase; 99.4 3E-12 6.4E-17 109.0 8.9 74 77-155 34-110 (477)
62 PTZ00102 disulphide isomerase; 99.4 3E-12 6.6E-17 109.0 8.9 75 77-155 359-435 (477)
63 cd02982 PDI_b'_family Protein 99.3 2.9E-12 6.4E-17 87.5 6.3 59 97-155 12-72 (103)
64 cd02964 TryX_like_family Trypa 99.3 7.5E-12 1.6E-16 89.8 7.4 45 96-140 16-63 (132)
65 PF13905 Thioredoxin_8: Thiore 99.3 1.2E-11 2.6E-16 83.5 7.6 46 97-142 1-48 (95)
66 cd02973 TRX_GRX_like Thioredox 99.3 6.9E-12 1.5E-16 79.7 6.1 54 101-155 3-56 (67)
67 PRK15412 thiol:disulfide inter 99.3 2E-11 4.4E-16 92.7 8.8 44 96-142 67-110 (185)
68 KOG0190 Protein disulfide isom 99.3 5.9E-12 1.3E-16 107.7 6.5 62 77-142 368-431 (493)
69 cd02955 SSP411 TRX domain, SSP 99.3 1.9E-11 4E-16 87.7 7.9 65 91-155 9-84 (124)
70 cd02967 mauD Methylamine utili 99.3 6.3E-12 1.4E-16 87.3 5.3 58 96-153 20-80 (114)
71 cd03010 TlpA_like_DsbE TlpA-li 99.3 2E-11 4.4E-16 86.6 7.7 41 96-138 24-64 (127)
72 PTZ00062 glutaredoxin; Provisi 99.3 1.3E-11 2.8E-16 95.5 7.1 64 81-156 4-67 (204)
73 TIGR00412 redox_disulf_2 small 99.3 1.2E-11 2.6E-16 81.2 5.8 52 101-155 2-53 (76)
74 cd03009 TryX_like_TryX_NRX Try 99.3 1.9E-11 4.1E-16 87.3 7.3 60 96-155 17-103 (131)
75 cd03007 PDI_a_ERp29_N PDIa fam 99.3 1.9E-11 4.2E-16 86.6 7.1 68 78-154 4-83 (116)
76 TIGR02738 TrbB type-F conjugat 99.2 2.6E-11 5.7E-16 89.9 6.7 42 96-139 49-90 (153)
77 TIGR02187 GlrX_arch Glutaredox 99.2 6E-11 1.3E-15 92.1 8.8 58 97-155 132-190 (215)
78 PRK14018 trifunctional thiored 99.2 2.8E-11 6E-16 104.8 6.8 60 96-155 55-143 (521)
79 TIGR02740 TraF-like TraF-like 99.2 9.1E-11 2E-15 94.4 8.2 59 95-155 164-233 (271)
80 KOG4277 Uncharacterized conser 99.2 1.9E-11 4.1E-16 98.8 3.4 59 96-154 42-103 (468)
81 PF13899 Thioredoxin_7: Thiore 99.2 6E-11 1.3E-15 78.6 5.1 60 84-143 4-66 (82)
82 TIGR00385 dsbE periplasmic pro 99.1 2.5E-10 5.3E-15 85.7 8.8 69 59-139 33-102 (173)
83 TIGR01130 ER_PDI_fam protein d 99.1 7.7E-11 1.7E-15 99.4 6.4 73 77-155 348-423 (462)
84 PLN02919 haloacid dehalogenase 99.1 1.6E-10 3.4E-15 107.6 8.4 60 96-155 419-506 (1057)
85 KOG0912 Thiol-disulfide isomer 99.1 1.1E-10 2.3E-15 94.3 5.6 68 83-154 3-75 (375)
86 TIGR02187 GlrX_arch Glutaredox 99.1 2.3E-10 4.9E-15 88.8 7.3 60 97-156 19-82 (215)
87 PTZ00056 glutathione peroxidas 99.1 1.9E-10 4.1E-15 88.6 6.5 43 96-138 38-81 (199)
88 KOG0191 Thioredoxin/protein di 99.1 2.2E-10 4.8E-15 95.9 6.4 61 95-155 45-105 (383)
89 KOG1731 FAD-dependent sulfhydr 99.1 6E-11 1.3E-15 102.2 2.7 82 68-154 33-119 (606)
90 PF08534 Redoxin: Redoxin; In 99.0 3.9E-10 8.5E-15 81.7 6.0 47 96-142 27-75 (146)
91 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.1E-09 2.3E-14 74.2 7.2 59 96-155 11-69 (89)
92 TIGR02661 MauD methylamine deh 99.0 1E-09 2.2E-14 83.7 7.8 66 60-136 46-111 (189)
93 cd02960 AGR Anterior Gradient 99.0 9.1E-10 2E-14 79.5 6.6 60 79-138 5-67 (130)
94 KOG0191 Thioredoxin/protein di 99.0 7.8E-10 1.7E-14 92.6 7.0 133 18-155 87-222 (383)
95 cd02966 TlpA_like_family TlpA- 99.0 1.5E-09 3.2E-14 73.7 7.1 59 96-154 18-100 (116)
96 PRK03147 thiol-disulfide oxido 99.0 2.1E-09 4.5E-14 79.8 7.6 45 96-140 60-105 (173)
97 cd00340 GSH_Peroxidase Glutath 99.0 1.7E-09 3.6E-14 79.5 6.9 42 96-138 21-63 (152)
98 COG0526 TrxA Thiol-disulfide i 99.0 1.8E-09 3.9E-14 72.4 6.4 58 97-154 32-92 (127)
99 PLN02399 phospholipid hydroper 99.0 1.4E-09 3.1E-14 85.9 6.7 43 96-138 98-141 (236)
100 cd03012 TlpA_like_DipZ_like Tl 99.0 1.9E-09 4.2E-14 76.6 6.7 42 96-137 22-64 (126)
101 TIGR02540 gpx7 putative glutat 98.9 3.1E-09 6.7E-14 78.1 6.7 42 96-137 21-63 (153)
102 PF13098 Thioredoxin_2: Thiore 98.9 1E-09 2.2E-14 76.0 3.1 62 94-155 2-86 (112)
103 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 4.6E-09 9.9E-14 73.7 6.2 57 96-154 19-96 (123)
104 TIGR01626 ytfJ_HI0045 conserve 98.9 2.9E-09 6.2E-14 81.2 5.2 45 96-143 58-108 (184)
105 PLN02412 probable glutathione 98.9 4.2E-09 9E-14 78.8 5.9 43 96-138 28-71 (167)
106 cd02958 UAS UAS family; UAS is 98.9 8.8E-09 1.9E-13 72.1 7.1 71 85-155 5-80 (114)
107 PRK00522 tpx lipid hydroperoxi 98.8 9.6E-09 2.1E-13 76.8 7.2 81 58-150 16-100 (167)
108 PRK13728 conjugal transfer pro 98.8 5.2E-09 1.1E-13 79.5 5.5 37 101-139 73-109 (181)
109 cd03014 PRX_Atyp2cys Peroxired 98.8 1.6E-08 3.5E-13 73.0 6.8 44 96-140 25-69 (143)
110 COG4232 Thiol:disulfide interc 98.7 2.1E-08 4.4E-13 87.2 6.8 75 78-155 457-538 (569)
111 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 3.4E-08 7.4E-13 69.1 6.5 68 63-141 2-71 (124)
112 smart00594 UAS UAS domain. 98.7 7.6E-08 1.6E-12 68.4 8.1 72 84-155 14-90 (122)
113 PTZ00256 glutathione peroxidas 98.7 4.2E-08 9.2E-13 74.4 6.4 43 96-138 39-83 (183)
114 cd02970 PRX_like2 Peroxiredoxi 98.7 8.6E-08 1.9E-12 69.0 7.4 47 97-143 23-71 (149)
115 TIGR03137 AhpC peroxiredoxin. 98.7 6.8E-08 1.5E-12 73.5 6.6 70 61-140 3-76 (187)
116 cd02969 PRX_like1 Peroxiredoxi 98.6 1.8E-07 3.9E-12 69.7 8.3 44 96-139 24-68 (171)
117 cd03018 PRX_AhpE_like Peroxire 98.6 1.2E-07 2.5E-12 68.7 5.8 44 97-140 27-73 (149)
118 KOG0914 Thioredoxin-like prote 98.6 7.3E-08 1.6E-12 74.8 4.7 74 76-151 125-199 (265)
119 cd02968 SCO SCO (an acronym fo 98.6 1.7E-07 3.7E-12 67.2 6.2 44 96-139 21-69 (142)
120 cd01659 TRX_superfamily Thiore 98.5 2.5E-07 5.4E-12 55.2 5.8 54 101-155 1-57 (69)
121 cd03015 PRX_Typ2cys Peroxiredo 98.5 1.9E-07 4.2E-12 69.9 6.1 45 96-140 28-74 (173)
122 PRK10606 btuE putative glutath 98.5 2.5E-07 5.3E-12 70.5 6.4 42 96-138 24-66 (183)
123 KOG2501 Thioredoxin, nucleored 98.5 1.7E-07 3.6E-12 69.5 5.0 45 96-140 32-79 (157)
124 TIGR02196 GlrX_YruB Glutaredox 98.5 4.1E-07 8.8E-12 57.5 5.9 49 101-155 2-54 (74)
125 TIGR02180 GRX_euk Glutaredoxin 98.5 4.1E-07 8.9E-12 59.5 5.2 52 101-154 1-57 (84)
126 PF03190 Thioredox_DsbH: Prote 98.4 3.9E-07 8.5E-12 68.1 5.5 61 87-147 27-90 (163)
127 TIGR02200 GlrX_actino Glutared 98.4 6.1E-07 1.3E-11 57.6 5.8 49 101-155 2-55 (77)
128 PRK09437 bcp thioredoxin-depen 98.4 6.6E-07 1.4E-11 65.4 5.9 71 61-142 5-77 (154)
129 PF06110 DUF953: Eukaryotic pr 98.4 1.5E-06 3.2E-11 61.9 7.3 75 81-155 3-93 (119)
130 PRK10382 alkyl hydroperoxide r 98.4 6.1E-07 1.3E-11 68.6 5.3 70 61-140 3-76 (187)
131 PRK13191 putative peroxiredoxi 98.3 9.9E-07 2.1E-11 68.8 5.7 72 59-141 6-79 (215)
132 PRK15000 peroxidase; Provision 98.3 1.1E-06 2.4E-11 67.7 5.7 73 62-140 4-79 (200)
133 cd03017 PRX_BCP Peroxiredoxin 98.3 1.5E-06 3.2E-11 62.1 5.8 46 96-141 22-69 (140)
134 PRK13190 putative peroxiredoxi 98.3 1.3E-06 2.8E-11 67.4 5.5 68 61-140 3-72 (202)
135 PRK13599 putative peroxiredoxi 98.3 1.7E-06 3.7E-11 67.4 6.2 69 61-140 3-73 (215)
136 cd02971 PRX_family Peroxiredox 98.3 2E-06 4.3E-11 61.4 5.8 45 96-140 21-67 (140)
137 PTZ00137 2-Cys peroxiredoxin; 98.2 3E-06 6.6E-11 67.9 6.2 75 56-139 64-142 (261)
138 PRK13189 peroxiredoxin; Provis 98.2 2.7E-06 5.8E-11 66.6 5.4 71 60-141 9-81 (222)
139 KOG3425 Uncharacterized conser 98.2 7.9E-06 1.7E-10 57.9 7.2 58 81-139 10-75 (128)
140 cd03016 PRX_1cys Peroxiredoxin 98.1 4.5E-06 9.8E-11 64.3 5.6 43 98-140 26-70 (203)
141 PF14595 Thioredoxin_9: Thiore 98.1 5.9E-06 1.3E-10 59.6 4.6 60 96-156 40-102 (129)
142 PTZ00253 tryparedoxin peroxida 98.0 1.1E-05 2.4E-10 61.9 5.7 72 60-141 6-82 (199)
143 PF13728 TraF: F plasmid trans 98.0 3.4E-05 7.4E-10 60.2 8.2 65 86-154 111-186 (215)
144 KOG0911 Glutaredoxin-related p 98.0 4.2E-06 9.2E-11 65.1 2.7 71 78-155 4-74 (227)
145 PRK11200 grxA glutaredoxin 1; 97.9 4E-05 8.8E-10 50.7 6.2 54 100-154 2-61 (85)
146 KOG0913 Thiol-disulfide isomer 97.9 2.2E-06 4.7E-11 67.2 -0.8 71 77-154 26-97 (248)
147 cd02976 NrdH NrdH-redoxin (Nrd 97.8 8E-05 1.7E-09 46.7 6.1 48 101-154 2-53 (73)
148 PRK11509 hydrogenase-1 operon 97.8 0.00012 2.6E-09 53.0 7.2 68 84-155 25-95 (132)
149 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.0001 2.2E-09 47.9 5.3 50 101-154 2-56 (82)
150 PF13192 Thioredoxin_3: Thiore 97.7 0.0002 4.4E-09 46.5 6.3 50 102-154 3-52 (76)
151 cd02991 UAS_ETEA UAS family, E 97.6 0.00032 6.9E-09 49.6 7.0 68 85-155 5-80 (116)
152 TIGR02183 GRXA Glutaredoxin, G 97.6 0.00017 3.7E-09 48.1 5.3 53 101-154 2-60 (86)
153 PF00462 Glutaredoxin: Glutare 97.5 0.00037 8E-09 42.9 5.9 48 101-154 1-52 (60)
154 cd02066 GRX_family Glutaredoxi 97.5 0.00032 6.9E-09 43.6 5.5 48 101-154 2-53 (72)
155 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.00035 7.5E-09 45.7 5.9 52 97-154 6-60 (79)
156 PF11009 DUF2847: Protein of u 97.5 0.00068 1.5E-08 47.2 7.5 72 78-151 2-77 (105)
157 TIGR02739 TraF type-F conjugat 97.5 0.00063 1.4E-08 54.5 7.8 57 96-154 149-216 (256)
158 PF02966 DIM1: Mitosis protein 97.5 0.0014 3.1E-08 47.3 8.7 70 79-150 4-73 (133)
159 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.00062 1.3E-08 43.6 5.3 47 102-154 2-51 (72)
160 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0006 1.3E-08 48.8 5.8 41 96-137 4-44 (154)
161 COG1225 Bcp Peroxiredoxin [Pos 97.3 0.0011 2.3E-08 49.4 6.5 81 59-150 3-88 (157)
162 TIGR03143 AhpF_homolog putativ 97.2 0.0013 2.7E-08 57.9 7.7 58 96-154 474-532 (555)
163 TIGR02181 GRX_bact Glutaredoxi 97.2 0.00077 1.7E-08 43.7 4.9 48 101-154 1-52 (79)
164 KOG3414 Component of the U4/U6 97.2 0.0024 5.1E-08 45.9 7.1 71 80-152 8-78 (142)
165 KOG1672 ATP binding protein [P 97.2 0.001 2.2E-08 51.0 5.5 75 75-154 66-140 (211)
166 cd03013 PRX5_like Peroxiredoxi 97.1 0.0011 2.4E-08 48.9 5.6 78 63-149 2-88 (155)
167 PRK13703 conjugal pilus assemb 97.1 0.0023 5E-08 51.0 7.6 56 96-153 142-208 (248)
168 PRK10329 glutaredoxin-like pro 97.1 0.0027 5.9E-08 41.9 6.2 48 101-154 3-53 (81)
169 PF02114 Phosducin: Phosducin; 97.0 0.00092 2E-08 53.8 4.5 77 75-154 125-201 (265)
170 TIGR02189 GlrX-like_plant Glut 97.0 0.0015 3.3E-08 44.7 4.8 48 101-154 10-64 (99)
171 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.0034 7.3E-08 39.9 6.2 48 101-154 2-54 (75)
172 PHA03050 glutaredoxin; Provisi 97.0 0.002 4.3E-08 45.0 5.4 51 101-154 15-72 (108)
173 PRK15317 alkyl hydroperoxide r 96.9 0.0033 7.2E-08 54.7 7.6 57 97-154 115-172 (517)
174 cd03027 GRX_DEP Glutaredoxin ( 96.8 0.0051 1.1E-07 39.2 5.7 48 101-154 3-54 (73)
175 cd03019 DsbA_DsbA DsbA family, 96.7 0.0031 6.6E-08 46.5 5.0 42 96-137 14-55 (178)
176 PF13462 Thioredoxin_4: Thiore 96.7 0.0084 1.8E-07 43.4 7.2 46 96-141 11-58 (162)
177 cd03029 GRX_hybridPRX5 Glutare 96.7 0.0057 1.2E-07 38.9 5.5 48 101-154 3-53 (72)
178 TIGR00365 monothiol glutaredox 96.7 0.0094 2E-07 40.6 6.8 58 85-153 4-69 (97)
179 PF05768 DUF836: Glutaredoxin- 96.7 0.0042 9.2E-08 40.8 4.8 51 101-154 2-52 (81)
180 COG1331 Highly conserved prote 96.4 0.0061 1.3E-07 54.5 5.2 62 83-148 33-97 (667)
181 COG2143 Thioredoxin-related pr 96.3 0.013 2.8E-07 43.8 5.9 62 95-156 40-120 (182)
182 PRK10954 periplasmic protein d 96.3 0.0062 1.4E-07 46.9 4.5 43 96-138 36-81 (207)
183 PRK10638 glutaredoxin 3; Provi 96.3 0.014 3.1E-07 38.2 5.6 48 101-154 4-55 (83)
184 PF13848 Thioredoxin_6: Thiore 96.3 0.032 7E-07 41.1 8.1 72 77-153 79-153 (184)
185 COG0695 GrxC Glutaredoxin and 96.3 0.012 2.6E-07 38.7 5.1 48 101-154 3-56 (80)
186 cd03028 GRX_PICOT_like Glutare 96.3 0.014 3E-07 39.0 5.5 52 97-154 7-66 (90)
187 cd02972 DsbA_family DsbA famil 96.3 0.01 2.2E-07 38.6 4.7 37 101-137 1-37 (98)
188 TIGR03140 AhpF alkyl hydropero 96.1 0.023 5.1E-07 49.5 7.5 57 97-154 117-173 (515)
189 cd02981 PDI_b_family Protein D 95.7 0.092 2E-06 34.8 7.5 63 78-150 2-64 (97)
190 PRK10824 glutaredoxin-4; Provi 95.4 0.061 1.3E-06 38.0 5.9 49 84-144 6-59 (115)
191 PRK12759 bifunctional gluaredo 95.2 0.046 9.9E-07 46.6 5.6 36 101-142 4-39 (410)
192 cd03067 PDI_b_PDIR_N PDIb fami 95.0 0.23 5E-06 34.5 7.6 68 78-150 4-73 (112)
193 PF00837 T4_deiodinase: Iodoth 95.0 0.028 6.1E-07 44.5 3.5 45 95-139 100-144 (237)
194 cd03020 DsbA_DsbC_DsbG DsbA fa 94.8 0.064 1.4E-06 40.7 5.1 26 96-121 76-101 (197)
195 cd02983 P5_C P5 family, C-term 94.8 0.33 7.1E-06 34.8 8.4 72 76-151 3-79 (130)
196 KOG1752 Glutaredoxin and relat 94.4 0.19 4.1E-06 34.9 6.1 47 85-141 6-52 (104)
197 PTZ00062 glutaredoxin; Provisi 94.3 0.16 3.5E-06 39.4 6.3 50 84-144 104-157 (204)
198 cd03072 PDI_b'_ERp44 PDIb' fam 94.0 0.39 8.5E-06 33.4 7.2 63 83-151 6-71 (111)
199 TIGR03143 AhpF_homolog putativ 93.9 0.29 6.4E-06 43.1 7.9 70 83-155 354-423 (555)
200 KOG2603 Oligosaccharyltransfer 93.7 0.29 6.2E-06 40.3 6.9 77 76-154 41-129 (331)
201 KOG3170 Conserved phosducin-li 93.5 0.35 7.6E-06 37.6 6.7 62 75-139 91-152 (240)
202 cd03073 PDI_b'_ERp72_ERp57 PDI 93.0 0.44 9.5E-06 33.2 6.1 42 110-151 31-73 (111)
203 PRK10877 protein disulfide iso 92.9 0.26 5.6E-06 38.8 5.4 40 95-137 105-144 (232)
204 PHA03075 glutaredoxin-like pro 92.3 0.27 5.8E-06 34.9 4.1 30 98-127 2-31 (123)
205 PF02630 SCO1-SenC: SCO1/SenC; 91.7 0.77 1.7E-05 34.4 6.4 52 96-147 51-109 (174)
206 cd02977 ArsC_family Arsenate R 91.6 0.23 5E-06 33.9 3.2 32 102-139 2-33 (105)
207 PRK11657 dsbG disulfide isomer 91.5 0.46 1E-05 37.8 5.3 39 96-136 116-154 (251)
208 TIGR01617 arsC_related transcr 89.2 1 2.3E-05 31.3 4.9 34 102-141 2-35 (117)
209 cd03031 GRX_GRX_like Glutaredo 89.2 1.1 2.4E-05 32.9 5.3 38 101-144 2-45 (147)
210 PRK01655 spxA transcriptional 89.0 0.96 2.1E-05 32.4 4.7 35 101-141 2-36 (131)
211 cd03036 ArsC_like Arsenate Red 88.1 0.83 1.8E-05 31.6 3.8 33 102-140 2-34 (111)
212 COG0450 AhpC Peroxiredoxin [Po 87.9 0.84 1.8E-05 35.1 4.0 70 60-139 3-77 (194)
213 cd03035 ArsC_Yffb Arsenate Red 87.8 0.77 1.7E-05 31.6 3.4 32 102-139 2-33 (105)
214 PF13743 Thioredoxin_5: Thiore 86.9 1.5 3.3E-05 32.8 4.9 34 103-136 2-35 (176)
215 PF07449 HyaE: Hydrogenase-1 e 85.1 1.4 3.1E-05 30.7 3.6 72 77-154 11-85 (107)
216 COG1999 Uncharacterized protei 84.6 3.3 7.1E-05 32.0 5.9 54 96-149 66-127 (207)
217 PRK12559 transcriptional regul 82.6 2.5 5.4E-05 30.3 4.2 33 101-139 2-34 (131)
218 cd03032 ArsC_Spx Arsenate Redu 82.5 3.5 7.5E-05 28.6 4.8 33 102-140 3-35 (115)
219 cd03060 GST_N_Omega_like GST_N 82.4 2.7 5.9E-05 26.1 3.9 48 102-153 2-50 (71)
220 PF07912 ERp29_N: ERp29, N-ter 80.7 18 0.0004 25.9 7.9 68 77-151 6-81 (126)
221 COG3019 Predicted metal-bindin 80.6 4.5 9.8E-05 29.7 4.8 45 100-150 27-71 (149)
222 PF04592 SelP_N: Selenoprotein 80.6 3.1 6.8E-05 33.0 4.3 44 95-138 24-71 (238)
223 COG4545 Glutaredoxin-related p 75.2 5 0.00011 26.4 3.4 36 97-140 2-37 (85)
224 cd03025 DsbA_FrnE_like DsbA fa 75.2 4.8 0.0001 29.7 3.9 28 101-128 3-30 (193)
225 PF06053 DUF929: Domain of unk 74.8 4 8.8E-05 32.7 3.5 34 95-128 56-89 (249)
226 KOG2640 Thioredoxin [Function 74.5 0.48 1E-05 39.0 -1.8 59 96-155 75-134 (319)
227 PF01216 Calsequestrin: Calseq 74.3 16 0.00035 30.8 7.0 70 76-151 35-112 (383)
228 PF00255 GSHPx: Glutathione pe 74.1 16 0.00035 25.3 6.1 43 96-139 20-63 (108)
229 COG1651 DsbG Protein-disulfide 72.7 7.9 0.00017 30.0 4.7 32 97-128 84-115 (244)
230 PRK13344 spxA transcriptional 72.1 7.8 0.00017 27.8 4.2 33 101-139 2-34 (132)
231 cd02978 KaiB_like KaiB-like fa 71.4 25 0.00054 22.7 6.7 55 100-154 3-58 (72)
232 PF04134 DUF393: Protein of un 68.4 8.9 0.00019 26.1 3.7 45 104-150 2-46 (114)
233 PRK09301 circadian clock prote 66.7 37 0.00079 23.5 6.4 59 96-154 4-63 (103)
234 cd03069 PDI_b_ERp57 PDIb famil 66.0 38 0.00081 22.8 6.6 62 78-149 3-64 (104)
235 cd03068 PDI_b_ERp72 PDIb famil 64.8 42 0.0009 22.9 7.3 64 77-150 2-66 (107)
236 cd00570 GST_N_family Glutathio 64.5 7.7 0.00017 22.7 2.5 32 103-138 3-34 (71)
237 PF09822 ABC_transp_aux: ABC-t 64.2 55 0.0012 25.8 8.0 68 85-155 15-92 (271)
238 PF01323 DSBA: DSBA-like thior 63.3 22 0.00047 26.0 5.3 39 100-138 1-40 (193)
239 cd03066 PDI_b_Calsequestrin_mi 60.7 47 0.001 22.1 7.3 63 77-149 2-65 (102)
240 cd03051 GST_N_GTT2_like GST_N 60.2 17 0.00036 22.0 3.6 31 103-137 3-33 (74)
241 cd03037 GST_N_GRX2 GST_N famil 60.0 12 0.00027 22.9 3.0 20 103-122 3-22 (71)
242 TIGR02654 circ_KaiB circadian 59.9 50 0.0011 22.1 6.5 57 98-154 3-60 (87)
243 cd03041 GST_N_2GST_N GST_N fam 57.8 32 0.00069 21.5 4.7 21 102-122 3-23 (77)
244 PF09673 TrbC_Ftype: Type-F co 57.6 34 0.00074 23.7 5.1 67 83-156 10-76 (113)
245 cd03074 PDI_b'_Calsequestrin_C 57.0 47 0.001 23.4 5.5 49 97-145 20-70 (120)
246 cd03059 GST_N_SspA GST_N famil 56.3 15 0.00033 22.4 2.9 33 102-138 2-34 (73)
247 COG0386 BtuE Glutathione perox 56.2 25 0.00054 26.3 4.3 43 96-139 24-67 (162)
248 cd00946 FBP_aldolase_IIA Class 54.1 51 0.0011 27.7 6.4 58 80-140 23-97 (345)
249 cd03040 GST_N_mPGES2 GST_N fam 53.6 20 0.00044 22.2 3.2 21 102-122 3-23 (77)
250 PF07689 KaiB: KaiB domain; I 52.1 21 0.00045 23.6 3.1 51 104-154 3-54 (82)
251 cd03045 GST_N_Delta_Epsilon GS 51.9 25 0.00053 21.5 3.4 31 103-137 3-33 (74)
252 KOG2244 Highly conserved prote 50.2 9.8 0.00021 34.1 1.6 58 87-144 102-162 (786)
253 KOG3171 Conserved phosducin-li 46.0 77 0.0017 25.2 5.8 65 72-138 135-199 (273)
254 KOG0854 Alkyl hydroperoxide re 45.5 58 0.0012 25.1 4.9 70 59-140 5-77 (224)
255 KOG2792 Putative cytochrome C 44.6 58 0.0013 26.4 5.0 50 96-145 138-195 (280)
256 KOG4277 Uncharacterized conser 44.5 43 0.00094 28.0 4.4 25 28-52 96-120 (468)
257 cd03033 ArsC_15kD Arsenate Red 44.3 32 0.00069 23.9 3.2 33 101-139 2-34 (113)
258 PRK07709 fructose-bisphosphate 43.5 1.6E+02 0.0036 23.9 7.7 74 79-154 24-106 (285)
259 COG2761 FrnE Predicted dithiol 43.0 46 0.001 26.3 4.2 31 98-128 4-35 (225)
260 cd00307 RuBisCO_small_like Rib 35.4 39 0.00084 22.5 2.4 50 85-138 7-71 (84)
261 cd03055 GST_N_Omega GST_N fami 35.0 75 0.0016 20.5 3.8 48 102-153 20-68 (89)
262 KOG1651 Glutathione peroxidase 34.7 75 0.0016 24.0 4.0 44 96-139 33-77 (171)
263 PF13417 GST_N_3: Glutathione 32.9 1.1E+02 0.0024 18.8 4.2 47 104-154 2-49 (75)
264 cd03034 ArsC_ArsC Arsenate Red 32.8 68 0.0015 21.9 3.4 32 102-139 2-33 (112)
265 TIGR01287 nifH nitrogenase iro 32.8 33 0.00072 27.0 2.1 65 79-150 207-271 (275)
266 PRK08185 hypothetical protein; 32.0 2.7E+02 0.0058 22.7 7.2 73 79-154 19-97 (283)
267 TIGR00014 arsC arsenate reduct 30.9 76 0.0016 21.8 3.4 32 102-139 2-33 (114)
268 KOG0855 Alkyl hydroperoxide re 30.7 39 0.00084 25.8 1.9 68 59-139 62-134 (211)
269 cd02990 UAS_FAF1 UAS family, F 30.4 2.1E+02 0.0046 20.6 7.4 56 85-140 5-67 (136)
270 PF14639 YqgF: Holliday-juncti 29.5 92 0.002 22.8 3.8 51 82-137 51-106 (150)
271 TIGR02652 conserved hypothetic 28.3 21 0.00046 26.2 0.2 13 108-120 11-23 (163)
272 PF09654 DUF2396: Protein of u 28.3 21 0.00045 26.2 0.2 13 108-120 8-20 (161)
273 PRK07315 fructose-bisphosphate 26.4 3.6E+02 0.0077 22.0 7.8 74 80-154 25-105 (293)
274 PF07700 HNOB: Heme NO binding 26.4 1.7E+02 0.0036 21.5 4.8 42 97-138 127-169 (171)
275 TIGR02742 TrbC_Ftype type-F co 25.7 1.6E+02 0.0034 21.2 4.3 65 84-156 12-76 (130)
276 COG1393 ArsC Arsenate reductas 25.2 96 0.0021 21.7 3.1 22 101-122 3-24 (117)
277 PF10589 NADH_4Fe-4S: NADH-ubi 25.1 36 0.00078 19.7 0.8 21 106-126 16-36 (46)
278 PF11238 DUF3039: Protein of u 23.9 1.1E+02 0.0024 18.9 2.8 24 95-118 22-56 (58)
279 PRK06801 hypothetical protein; 23.9 4E+02 0.0086 21.7 6.9 72 80-154 25-103 (286)
280 TIGR00597 rad10 DNA repair pro 23.1 82 0.0018 22.1 2.4 35 116-150 56-90 (112)
281 PF00150 Cellulase: Cellulase 23.0 3.1E+02 0.0067 20.9 6.0 59 83-141 61-131 (281)
282 PRK06806 fructose-bisphosphate 21.8 4.2E+02 0.0091 21.4 6.6 73 79-154 24-103 (281)
283 PF03960 ArsC: ArsC family; I 21.8 1.7E+02 0.0038 19.6 3.9 31 104-140 1-31 (110)
284 PRK09195 gatY tagatose-bisphos 21.0 4.6E+02 0.01 21.3 6.8 73 79-154 24-103 (284)
285 COG0295 Cdd Cytidine deaminase 20.7 60 0.0013 23.5 1.3 13 107-119 86-98 (134)
286 TIGR01859 fruc_bis_ald_ fructo 20.7 4.6E+02 0.0099 21.2 7.2 73 80-154 23-103 (282)
287 PRK15317 alkyl hydroperoxide r 20.7 3.8E+02 0.0083 23.3 6.6 50 83-136 7-56 (517)
288 PF09547 Spore_IV_A: Stage IV 20.4 2.9E+02 0.0064 24.3 5.6 64 87-155 170-244 (492)
289 cd00947 TBP_aldolase_IIB Tagat 20.3 4.7E+02 0.01 21.2 7.2 72 80-154 20-98 (276)
290 PF06580 His_kinase: Histidine 20.2 41 0.00089 21.8 0.4 9 7-15 10-18 (82)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-20 Score=134.92 Aligned_cols=76 Identities=28% Similarity=0.524 Sum_probs=69.9
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
...+.+.++|++.+. +++.||+|+|||+||+||+.+.|.+++++++|.+.+.|++||.|++++++.+|+|.++|+-
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 445667778888886 6899999999999999999999999999999998999999999999999999999999974
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.81 E-value=1e-19 Score=128.59 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=64.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
.++|++.+.. +.++++||+|||+|||||+.+.|.++++++++++.+.|++||+|++++++.+|+|.++|+.+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~ 73 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVM 73 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence 3567777753 36889999999999999999999999999999877899999999999999999999999753
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-19 Score=125.12 Aligned_cols=73 Identities=26% Similarity=0.505 Sum_probs=63.9
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
..+++.....+...+++++|+|||+|||||+.+.|.+++|+.+|++ +.|++||+|+.++++++++|.++|+++
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~ 79 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFV 79 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEE
Confidence 3355555554445679999999999999999999999999999997 999999999999999999999999863
No 4
>PHA02278 thioredoxin-like protein
Probab=99.77 E-value=1.6e-18 Score=120.59 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC----HHHHHHhCCccceecC
Q 031630 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----SKDLVKRGNISVSIQI 156 (156)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~----~~l~~~~~i~sv~~~~ 156 (156)
++.++|++.+ ..+++++|+|||+|||||+.+.|.++++++++..++.|+++|+|.+ ++++++|+|.++|+.|
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 3567888888 4799999999999999999999999999988655578999999975 7899999999999864
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.77 E-value=2.6e-18 Score=118.94 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHhCCccceecC
Q 031630 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISVSIQI 156 (156)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~---~l~~~~~i~sv~~~~ 156 (156)
+.++|++++.. ..++++||+|||+||++|+.+.|.|++++++++ ++.|+.||+|+++ +++++|+|.++|+.+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-DVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 45788999864 358999999999999999999999999999994 6999999999874 899999999999753
No 6
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.76 E-value=2.9e-18 Score=120.74 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=64.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
.+++++.+.. ..+++|+|+|+|+|||||+.+.|.|+++++++++.+.|++||+|+.++++++|+|.++|+++
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfv 73 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTI 73 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEE
Confidence 3567788765 36999999999999999999999999999999855999999999999999999999999864
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=5.4e-18 Score=116.33 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=66.7
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
++.++ .++|++.+ ..+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++++++++++|.++|+.
T Consensus 3 ~~~l~-~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 3 IVTLD-RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred eEEcC-HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 45554 66899988 4679999999999999999999999999999987899999999999999999999999864
No 8
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.75 E-value=4.3e-18 Score=124.51 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=67.2
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
+..+.+..+|++.+.. ..+++++|+|||+||+||+.+.|.|+++++++++.+.|++||+|++++++.+|+|.+.+
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~ 79 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPC 79 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCC
Confidence 3456788899999964 46899999999999999999999999999999877899999999999999999999554
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.75 E-value=1e-17 Score=118.33 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=65.9
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH-HHhCCcccee
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL-VKRGNISVSI 154 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~-~~~~i~sv~~ 154 (156)
++.+++ .++|++++.- ...+++++|+|||+||++|+.++|.++++++++.+.+.|++||++++++++ ++|+|.++|+
T Consensus 10 ~v~~l~-~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 10 PVLDFY-KGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CeEEec-hhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 456665 4578876210 057999999999999999999999999999999877999999999999999 5899999986
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 88 l 88 (113)
T cd03006 88 I 88 (113)
T ss_pred E
Confidence 4
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.74 E-value=1.3e-17 Score=114.79 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=66.3
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+++ .++|++.+. ..+++++|+|||+||++|+.+.|.++++++++.+.+.|++||++++++++++++|.++|+.
T Consensus 4 ~~l~-~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 4 ITLT-PEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred eEcC-HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 4454 668998875 4678999999999999999999999999999987799999999999999999999999874
No 11
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.73 E-value=2e-17 Score=114.20 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=65.2
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.|.+.++|++++ +++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|+| +++++++|+|.++|+.
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~ 75 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTF 75 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEE
Confidence 467888999988 4699999999999999999999999999999975 4889999999 8899999999999975
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.73 E-value=2.3e-17 Score=111.90 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=62.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+|++.+.+ ..+++++|+|||+||++|+.+.|.++++++.+++.+.+++||++++++++++|+|.++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~ 70 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTV 70 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEE
Confidence 56777753 3488999999999999999999999999999987799999999999999999999999875
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.70 E-value=6e-17 Score=111.78 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=59.5
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~i~sv~~~ 155 (156)
.+.++++. ..|++++|+|||+||++|+.+.|.|+++++++++ +.+++||.+ ++++++++|+|.++|+.
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~ 76 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTI 76 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEE
Confidence 34444433 6799999999999999999999999999999974 899999998 89999999999999874
No 14
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5e-17 Score=130.31 Aligned_cols=76 Identities=29% Similarity=0.563 Sum_probs=67.4
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
++.++ ..+|.+.+.+. ...+||||+||||||+||+.+.|.+++++.+|.+++.+++||||+++.++..|||.|+|+
T Consensus 25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 66776 45787777542 345699999999999999999999999999999999999999999999999999999986
No 15
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.70 E-value=1.1e-16 Score=112.82 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+..|.+.++|.+.+. ++++++|.||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++|+.
T Consensus 5 ~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 5 KYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 4677888789999994 578999999999999999999999999999875 99999999999999999999999975
Q ss_pred C
Q 031630 156 I 156 (156)
Q Consensus 156 ~ 156 (156)
+
T Consensus 80 l 80 (113)
T cd02989 80 I 80 (113)
T ss_pred E
Confidence 3
No 16
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.69 E-value=1.8e-16 Score=110.11 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=64.3
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc------CCeEEEEEECCCCHHHHHHhCCc
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~------~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
+++++ .++|++++ ..+++++|.|||+||++|+++.|.++++++.+. +++.+++||++++++++++|+|.
T Consensus 3 v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 3 IVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred eEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 45554 66899988 468899999999999999999999999988753 24899999999999999999999
Q ss_pred cceec
Q 031630 151 SVSIQ 155 (156)
Q Consensus 151 sv~~~ 155 (156)
++|+-
T Consensus 78 ~~Ptl 82 (108)
T cd02996 78 KYPTL 82 (108)
T ss_pred cCCEE
Confidence 99964
No 17
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.68 E-value=2.5e-16 Score=116.63 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=67.0
Q ss_pred cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcc--
Q 031630 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS-- 151 (156)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~s-- 151 (156)
..+++++ .++|++.+.. ..+++++|+|||+||++|+.+.|.++++++++.+ ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence 3456665 5689998853 3467999999999999999999999999999874 59999999999999999999988
Q ss_pred ----ceec
Q 031630 152 ----VSIQ 155 (156)
Q Consensus 152 ----v~~~ 155 (156)
+|+.
T Consensus 105 ~v~~~PT~ 112 (152)
T cd02962 105 LSKQLPTI 112 (152)
T ss_pred CcCCCCEE
Confidence 7764
No 18
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.68 E-value=2.7e-16 Score=108.72 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=65.7
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~ 155 (156)
.+++ .++|++.+. +.+++++|.|||+||++|+.+.|.++++++.+.+.+.|+.+|+++ +++++.+|+|.++|+.
T Consensus 3 ~~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 3 YELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred EEcc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 4454 558998886 568899999999999999999999999999998779999999998 8999999999999864
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.1e-17 Score=127.26 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=72.1
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++.|+++.+|+..+.. ..+|.++|+|+|+|||||++++|.|+.++.+|+ +.+|++||+|++..++..+||.++|++
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceE
Confidence 46788899999999975 568999999999999999999999999999998 489999999999999999999999987
Q ss_pred C
Q 031630 156 I 156 (156)
Q Consensus 156 ~ 156 (156)
|
T Consensus 79 i 79 (288)
T KOG0908|consen 79 I 79 (288)
T ss_pred E
Confidence 6
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.67 E-value=3.1e-16 Score=106.55 Aligned_cols=71 Identities=31% Similarity=0.569 Sum_probs=65.3
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+.++|++.+. .++++++|.||++||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|.++|+.
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTI 75 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEE
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEE
Confidence 4668999995 3489999999999999999999999999999987899999999999999999999999874
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.66 E-value=6e-16 Score=105.14 Aligned_cols=74 Identities=22% Similarity=0.464 Sum_probs=67.2
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+..+++.+++++++ ..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++.+++++|++.++|+.
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEE
Confidence 45678888999988 4689999999999999999999999999998874 99999999999999999999999874
No 22
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.65 E-value=3.8e-16 Score=109.68 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=65.0
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+.+|++ ++|.+.+... ..+++++|+|||+||++|+.+.|.++++++++++ +.|++||++++ +++++|+|.++|+.
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 3566776 7888888520 1148999999999999999999999999999974 89999999988 99999999999975
No 23
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.65 E-value=8.4e-16 Score=105.16 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=62.5
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+++++ .++|++++ .++ ++|+|||+||++|+.+.|.|+++++.+.+ ++.++.+|++++++++++|+|.++|+.
T Consensus 3 v~~l~-~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 3 VVELT-DSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred eEEcC-hhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 45565 66899887 244 78999999999999999999999988764 599999999999999999999999874
No 24
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.65 E-value=7e-16 Score=110.06 Aligned_cols=75 Identities=21% Similarity=0.127 Sum_probs=66.4
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh--HH--hhhHHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhCCc
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~--Ck--~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
+..++ .++|++.+. +++.++|++|||+||+| |+ .+.|.+.+++.++ .+++.|++||+|++++++++|||.
T Consensus 11 v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 11 VIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred eeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 44554 579999987 57889999999999987 99 8899999999988 767999999999999999999999
Q ss_pred cceec
Q 031630 151 SVSIQ 155 (156)
Q Consensus 151 sv~~~ 155 (156)
++|+-
T Consensus 87 ~iPTl 91 (120)
T cd03065 87 EEDSI 91 (120)
T ss_pred cccEE
Confidence 99974
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.65 E-value=1e-15 Score=106.22 Aligned_cols=76 Identities=25% Similarity=0.515 Sum_probs=66.9
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++.+.. ++|++.+. ..+++++|+||++||++|+.+.|.++++++.+.+++.++.+|++..+.++++|++.++|+.
T Consensus 4 ~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred cceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4667754 57876654 4689999999999999999999999999999987899999999999999999999999864
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.64 E-value=4.2e-16 Score=109.28 Aligned_cols=72 Identities=19% Similarity=0.380 Sum_probs=61.7
Q ss_pred ChhhHHHH-HHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031630 82 DSDHLDQI-LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 82 ~~~~~~~~-l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+.++|++. +.. ..+++++|+|||+||++|+.+.|.++++++++++ ++.+++||++.+++++++++|.++|+.
T Consensus 10 ~~~~~~~~~~~~--~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~ 83 (111)
T cd02963 10 TFSQYENEIVPK--SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAI 83 (111)
T ss_pred eHHHHHHhhccc--cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEE
Confidence 34566543 321 3689999999999999999999999999999975 599999999999999999999999964
No 27
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.64 E-value=6.1e-16 Score=108.75 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlV~F~A~W--C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
+..+|++.+ ..+.+++|+|||+| ||+|+.+.|.|++++++|++.+.|++||++++++++.+|+|.++|+.|
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 356888888 46899999999997 999999999999999999988999999999999999999999999854
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.64 E-value=1.2e-15 Score=104.09 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=65.2
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+++ ..+|++.+. +.+++++|.|||+||++|+.+.|.|.++++++.+.+.|+.+|++++++++++++|.++|+-
T Consensus 3 ~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 3 VELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTI 76 (103)
T ss_pred EEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEE
Confidence 4454 568888875 4577799999999999999999999999999887799999999999999999999999863
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=1.4e-15 Score=103.02 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=63.3
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++|++++.. ..+++++|+|||+||++|+.+.|.|+++++++..++.++++|.+++++++.+|++.++|+.
T Consensus 2 ~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTF 72 (97)
T ss_pred HHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEE
Confidence 4678888864 2269999999999999999999999999999655799999999999999999999999875
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=99.62 E-value=2.1e-15 Score=109.87 Aligned_cols=70 Identities=27% Similarity=0.485 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+.++|++++ +++++++|+|||+||++|+.+.|.|+++++++.+++.|+++|++++++++++|+|.++|+.
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 466899888 4689999999999999999999999999999887899999999999999999999999975
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.62 E-value=1.9e-15 Score=103.06 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=62.8
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcccee
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
..++ .++|++.+. ++ +++|+|||+||++|+.+.|.++++++++.+ ++.++.+|++++++++++|+|.++|+
T Consensus 3 ~~l~-~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 3 LELT-EDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eECC-HHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 3454 568999984 34 599999999999999999999999999865 69999999999999999999999986
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 77 ~ 77 (102)
T cd03005 77 L 77 (102)
T ss_pred E
Confidence 4
No 32
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.61 E-value=2.3e-15 Score=103.86 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=59.7
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
++|+++. .+++++|.|||+||++|+.+.|.|+++++++.+ ++.++.+|++..++++++++|.++|+.+
T Consensus 7 ~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 7 DSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEE
Confidence 5677643 478999999999999999999999999998842 4899999999999999999999999753
No 33
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.61 E-value=2.7e-15 Score=106.88 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=65.6
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-------CHHHH
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------VSKDL 144 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A-------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-------~~~l~ 144 (156)
.+.+.++|.+.+.. ..+++++|+||| +||++|+.+.|.++++++++++++.|++||+++ +.+++
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 35667788888863 347999999999 999999999999999999998679999999976 46899
Q ss_pred HHhCCc-cceecC
Q 031630 145 VKRGNI-SVSIQI 156 (156)
Q Consensus 145 ~~~~i~-sv~~~~ 156 (156)
.+++|. ++|+.+
T Consensus 83 ~~~~I~~~iPT~~ 95 (119)
T cd02952 83 TDPKLTTGVPTLL 95 (119)
T ss_pred hccCcccCCCEEE
Confidence 999998 998753
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.60 E-value=6.8e-15 Score=100.46 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=63.7
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCC--CHHHHHHhCCccce
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNISVS 153 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~--~~~l~~~~~i~sv~ 153 (156)
..++ .++|++.+. .+++++|+|||+||++|+++.|.++++++.+. +.+.++.+|+++ ++.++.+++|.++|
T Consensus 3 ~~l~-~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 3 VHLT-DEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred EEec-hHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 4454 558888884 57899999999999999999999999999886 468999999988 99999999999998
Q ss_pred ec
Q 031630 154 IQ 155 (156)
Q Consensus 154 ~~ 155 (156)
+.
T Consensus 78 t~ 79 (104)
T cd02997 78 TF 79 (104)
T ss_pred EE
Confidence 64
No 35
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.60 E-value=3.8e-15 Score=108.98 Aligned_cols=68 Identities=18% Similarity=0.445 Sum_probs=59.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC--HHHHHHhCCccceec
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV--SKDLVKRGNISVSIQ 155 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l~~~~~i~sv~~~ 155 (156)
.++++.+ ..++++||+|||+||++|+.+.|.++++++++.+++.|+.||++.. .+++++|+|.++|+.
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~ 80 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHF 80 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEE
Confidence 4666666 4799999999999999999999999999999987788998888764 688999999999874
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.59 E-value=7.1e-15 Score=100.28 Aligned_cols=74 Identities=24% Similarity=0.450 Sum_probs=64.4
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCC-CHHHHHHhCCcccee
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNISVSI 154 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~-~~~l~~~~~i~sv~~ 154 (156)
..++ .++|++.+. ..+++++|.|||+||++|+.+.|.++++++.+. +++.++.+|+++ +++++++++|.++|.
T Consensus 3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~ 78 (105)
T cd02998 3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78 (105)
T ss_pred EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCE
Confidence 3454 458888775 457799999999999999999999999999986 469999999999 999999999999986
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 79 ~ 79 (105)
T cd02998 79 L 79 (105)
T ss_pred E
Confidence 4
No 37
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.59 E-value=1.1e-14 Score=101.54 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=63.4
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC-CHHHHHH-hCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-VSKDLVK-RGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~-~~~l~~~-~~i~sv~ 153 (156)
+++++ .++|+.++.. .+.+++++|+|||+||++|+++.|.++++++.+.+ ++.++.||++. ...++.+ +++.++|
T Consensus 3 v~~~~-~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTLS-RAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred ceecc-HHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 44554 5588888742 14689999999999999999999999999999976 49999999997 5777764 8999888
Q ss_pred ec
Q 031630 154 IQ 155 (156)
Q Consensus 154 ~~ 155 (156)
+.
T Consensus 81 ti 82 (109)
T cd02993 81 TI 82 (109)
T ss_pred EE
Confidence 64
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.58 E-value=7.4e-15 Score=115.02 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=67.8
Q ss_pred ceEecCChhhHHHHHHHhh-cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 76 ELEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~-~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
.+.+++ .++|++++.... ..+++++|+|||+||++|+.+.|.++++++++++.+.|+.+|++++++++++|+|.++|+
T Consensus 31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 356664 669999885310 136899999999999999999999999999998779999999999999999999999987
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 110 l 110 (224)
T PTZ00443 110 L 110 (224)
T ss_pred E
Confidence 4
No 39
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=8.3e-15 Score=110.80 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=67.5
Q ss_pred ccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031630 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
...+.+|++.++|.+.+... ..+.+|||.|||+||++|+.+.|.|++++++|+ .+.|++||++++ +++.+|+|.++|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCC
Confidence 34577888757888888531 123599999999999999999999999999997 599999999987 899999999999
Q ss_pred ecC
Q 031630 154 IQI 156 (156)
Q Consensus 154 ~~~ 156 (156)
+.+
T Consensus 138 Tll 140 (175)
T cd02987 138 ALL 140 (175)
T ss_pred EEE
Confidence 753
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.58 E-value=6.8e-15 Score=101.35 Aligned_cols=68 Identities=21% Similarity=0.408 Sum_probs=58.8
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----CHHHHHHhCCccceec
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~i~sv~~~ 155 (156)
+.|++.+ .++++++|.|||+||++|+.+.|.+ +++++.+.+++.++.+|+++ .++++++|+|.++|+.
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTY 76 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEE
Confidence 3566666 5799999999999999999999988 67888887679999999976 5789999999999864
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.57 E-value=1.7e-14 Score=97.47 Aligned_cols=70 Identities=30% Similarity=0.610 Sum_probs=63.0
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++|.+.+. ..+++++|.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++|..
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~ 72 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTL 72 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 457888775 3577999999999999999999999999999887799999999999999999999999864
No 42
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.56 E-value=2e-14 Score=101.32 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=63.1
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECC--CCHHHHHHhCCcc
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVN--KVSKDLVKRGNIS 151 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~l~~~~~i~s 151 (156)
+++++ .++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|+.+|++ .+++++++|+|.+
T Consensus 3 v~~l~-~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 3 VIVLD-AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred eEECC-HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 34554 668999986 4568999999999999999999999999998753 4899999985 4778999999999
Q ss_pred ceec
Q 031630 152 VSIQ 155 (156)
Q Consensus 152 v~~~ 155 (156)
+|+.
T Consensus 79 ~Pt~ 82 (114)
T cd02992 79 YPTL 82 (114)
T ss_pred CCEE
Confidence 9864
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.56 E-value=2.5e-14 Score=97.61 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=61.4
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++..+. ..+++++|.||++||++|+.+.|.++++++++++++.++.+|+++.++++.+++|.++|+.
T Consensus 4 ~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~ 71 (97)
T cd02949 4 ALRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTV 71 (97)
T ss_pred hHHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEE
Confidence 3556665 5799999999999999999999999999999987799999999999999999999999864
No 44
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.55 E-value=2.5e-14 Score=97.05 Aligned_cols=69 Identities=25% Similarity=0.466 Sum_probs=62.7
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCccceec
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++|++++ ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.+|++++++++++|+|.++|..
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTI 73 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEE
Confidence 45788888 4699999999999999999999999999999876 599999999999999999999999853
No 45
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.55 E-value=2.4e-14 Score=97.61 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=61.6
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
..++ .++|++.+. ..+++++|+|||+||++|+.+.|.++++++.+.+ ++.++.+|++.+ +++..+++.++|+
T Consensus 3 ~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt 76 (104)
T cd02995 3 KVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPT 76 (104)
T ss_pred EEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCE
Confidence 4454 558888886 4579999999999999999999999999999875 599999999987 5788899888875
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.54 E-value=3.5e-14 Score=100.00 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=55.3
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++..++|.|||+||++|+.++|.++++++.+ +++.|..+|.+++++++.+|+|.++|+.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~ 79 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTT 79 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEE
Confidence 45778999999999999999999999999887 4699999999999999999999999975
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.52 E-value=6.7e-14 Score=93.79 Aligned_cols=69 Identities=29% Similarity=0.488 Sum_probs=62.3
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
..+|.+.+. ++++++|.||++||++|+.+.|.++++++.+ .+++.|+.+|+++++.++++++|.++|..
T Consensus 5 ~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02961 5 DDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTI 75 (101)
T ss_pred HHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEE
Confidence 458888884 5679999999999999999999999999999 46799999999999999999999998864
No 48
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=8.9e-14 Score=98.81 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=52.5
Q ss_pred cCC-CcEEEEEeCCCChhHHhhhHHHH---HHHHHhcCCeEEEEEECCCC-------------HHHHHHhCCccceec
Q 031630 95 ELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV-------------SKDLVKRGNISVSIQ 155 (156)
Q Consensus 95 ~~~-k~vlV~F~A~WC~~Ck~~~p~l~---~la~~~~~~v~~~~vd~d~~-------------~~l~~~~~i~sv~~~ 155 (156)
.++ ++++|+|||+||++|++++|.+. .+.+.+.+++.++.+|++.. .+++.+|+|.++|+.
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 578 99999999999999999999884 56666655689999999864 688999999999874
No 49
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.48 E-value=9.4e-14 Score=98.49 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=54.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHhCCcc--ceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS--VSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-~l~~~~~i~s--v~~~ 155 (156)
++++.++.|+..+++++|+|||+||++|+.+.|.+.+.......+..|+.||++.++ .....|++.+ +|+.
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceE
Confidence 577777777788999999999999999999999999976654333456667776543 3456787765 6654
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.45 E-value=3.4e-13 Score=115.20 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=64.3
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH-HHH-HHhCCccc
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS-KDL-VKRGNISV 152 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~-~l~-~~~~i~sv 152 (156)
.++.++ .++|++++.. .+.++++||+|||+||++|+.+.|.|+++++++.+ ++.|++||+|.+. +++ ++|+|.++
T Consensus 352 ~Vv~L~-~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEECC-HHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 455655 5689999841 15799999999999999999999999999999975 4899999998754 454 68999999
Q ss_pred eec
Q 031630 153 SIQ 155 (156)
Q Consensus 153 ~~~ 155 (156)
|+.
T Consensus 430 PTi 432 (463)
T TIGR00424 430 PTI 432 (463)
T ss_pred ceE
Confidence 875
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.5e-13 Score=116.13 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=66.1
Q ss_pred cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcc
Q 031630 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS 151 (156)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~s 151 (156)
..+..+ +.++|++.+ ..+..++|.||||||+||++++|.++++++.+.. .+.+++||++.+.++|.+|+|..
T Consensus 25 ~~Vl~L-t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 25 EDVLVL-TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cceEEE-ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence 345555 467999999 5789999999999999999999999999998854 68999999999999999999998
Q ss_pred cee
Q 031630 152 VSI 154 (156)
Q Consensus 152 v~~ 154 (156)
+|+
T Consensus 100 yPT 102 (493)
T KOG0190|consen 100 YPT 102 (493)
T ss_pred CCe
Confidence 875
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=99.42 E-value=1.1e-12 Score=112.11 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=66.2
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC-CCHHHHH-HhCCccc
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLV-KRGNISV 152 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d-~~~~l~~-~~~i~sv 152 (156)
.++.++ .++|++++... ..++++||+|||+||++|+.+.|.|+++++++.+ ++.|++||++ ++.+++. +|+|.++
T Consensus 346 ~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 346 NVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 455654 66899887421 4689999999999999999999999999999865 5999999999 7888886 5999999
Q ss_pred eec
Q 031630 153 SIQ 155 (156)
Q Consensus 153 ~~~ 155 (156)
|+.
T Consensus 424 PTi 426 (457)
T PLN02309 424 PTI 426 (457)
T ss_pred eEE
Confidence 875
No 53
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.39 E-value=8e-13 Score=101.36 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=60.9
Q ss_pred ccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031630 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
...+.+|+. ++|...+..+ ..+.+|||.||++||++|+.+.|.|++++.+|+ .+.|++||+++. +..|++.++|
T Consensus 81 ~G~v~eis~-~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 81 FGEVYEISK-PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCeEEEeCH-HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCC
Confidence 345777864 4666554321 224689999999999999999999999999997 499999999864 5789999998
Q ss_pred ecC
Q 031630 154 IQI 156 (156)
Q Consensus 154 ~~~ 156 (156)
+.|
T Consensus 155 Tll 157 (192)
T cd02988 155 TIL 157 (192)
T ss_pred EEE
Confidence 753
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.39 E-value=1.3e-12 Score=110.22 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=64.5
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
+..+ +.++|++++. .+++++|.|||+||++|+.+.|.+.++++.+.+ ++.|+.||++++++++++++|.++|
T Consensus 3 v~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 3 VLVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP 77 (462)
T ss_pred ceEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence 3444 4668999984 688999999999999999999999999887753 4999999999999999999999988
Q ss_pred ec
Q 031630 154 IQ 155 (156)
Q Consensus 154 ~~ 155 (156)
+.
T Consensus 78 t~ 79 (462)
T TIGR01130 78 TL 79 (462)
T ss_pred EE
Confidence 63
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.39 E-value=1.5e-12 Score=93.05 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=55.6
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----------HHHH
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------KDLV 145 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------~l~~ 145 (156)
..+|+ .++|.+.+ .+++.++|.|+++|||+|+.+.|.|++++++. ++.++.||++.++ ++..
T Consensus 8 ~~~it-~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 8 LEVTT-VVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred ceecC-HHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 34454 56888888 46899999999999999999999999999983 4779999988543 4456
Q ss_pred HhCC----ccceec
Q 031630 146 KRGN----ISVSIQ 155 (156)
Q Consensus 146 ~~~i----~sv~~~ 155 (156)
+|++ .++|+.
T Consensus 81 ~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 81 RFGIPTSFMGTPTF 94 (122)
T ss_pred HcCCcccCCCCCEE
Confidence 6654 447764
No 56
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.39 E-value=1.2e-12 Score=85.84 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=52.2
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
.+..||++||++|+.+.|.+++++++++..+.++.||+++++++++++|+.++|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~ 58 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIV 58 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEE
Confidence 367799999999999999999999998767999999999999999999999998753
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.39 E-value=2e-12 Score=84.81 Aligned_cols=66 Identities=30% Similarity=0.583 Sum_probs=58.4
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+|++.+. .+++++|.||++||++|+.+.|.++++++. .+++.++.+|++++++++.++++.++|+-
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~ 67 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTF 67 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEE
Confidence 4666663 469999999999999999999999999988 44699999999999999999999998863
No 58
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.37 E-value=2.8e-12 Score=112.47 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=68.2
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----CHHHHHHhC
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----VSKDLVKRG 148 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----~~~l~~~~~ 148 (156)
...++.+.+++++.++.++.+||+++|+|||+||++|+.++|.. +++.++++ ++.++++|+++ +.+++++|+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence 46778888999999988777899999999999999999999875 67777776 58999999975 368899999
Q ss_pred Cccceec
Q 031630 149 NISVSIQ 155 (156)
Q Consensus 149 i~sv~~~ 155 (156)
+.++|+.
T Consensus 532 v~g~Pt~ 538 (571)
T PRK00293 532 VLGLPTI 538 (571)
T ss_pred CCCCCEE
Confidence 9999874
No 59
>PHA02125 thioredoxin-like protein
Probab=99.37 E-value=1.5e-12 Score=85.17 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=44.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
++.|||+||++|+.+.|.|+++. +.++.||.+++++++++|+|.++|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 78999999999999999998652 468999999999999999999999864
No 60
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.37 E-value=1.9e-12 Score=95.28 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=40.6
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--------CeEEEEEECCCCHH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVSK 142 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--------~v~~~~vd~d~~~~ 142 (156)
.||+++|+|||+||++|++++|.|.++++++.+ ++.++.|+.|+..+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 589999999999999999999999998876542 48999999986543
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.35 E-value=3e-12 Score=109.05 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=64.5
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc---CCeEEEEEECCCCHHHHHHhCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
+..++ .++|++++. .++.++|+|||+||++|+++.|.++++++.+. .++.|+.||++++.+++++|+|.++|
T Consensus 34 v~~l~-~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 34 VTVLT-DSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred cEEcc-hhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 45554 668999884 68899999999999999999999999987764 35999999999999999999999998
Q ss_pred ec
Q 031630 154 IQ 155 (156)
Q Consensus 154 ~~ 155 (156)
+.
T Consensus 109 t~ 110 (477)
T PTZ00102 109 TI 110 (477)
T ss_pred EE
Confidence 64
No 62
>PTZ00102 disulphide isomerase; Provisional
Probab=99.35 E-value=3e-12 Score=108.98 Aligned_cols=75 Identities=13% Similarity=0.352 Sum_probs=65.0
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhCCcccee
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
+..+. .++|++++. ..+++++|+|||+||++|+.+.|.|+++++.+.+ .+.++++|++.+...+.++++.++|+
T Consensus 359 v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 359 VKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred eEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 44554 568888865 5799999999999999999999999999998864 58999999999999999999999886
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
-
T Consensus 435 ~ 435 (477)
T PTZ00102 435 I 435 (477)
T ss_pred E
Confidence 4
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.34 E-value=2.9e-12 Score=87.48 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc--cceec
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI--SVSIQ 155 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~--sv~~~ 155 (156)
++++++.|+++||++|+.+.|.++++++++.+++.|+.||++++++++..+|+. ++|.-
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~ 72 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVI 72 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEE
Confidence 799999999999999999999999999999888999999999999999999999 77753
No 64
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.31 E-value=7.5e-12 Score=89.81 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~ 140 (156)
.||+++|+|||+||++|+.+.|.++++++++.+ ++.++.|+++..
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 589999999999999999999999999988764 488888888764
No 65
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.30 E-value=1.2e-11 Score=83.48 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=40.4
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHH
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK 142 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~ 142 (156)
||+++|+|||+||++|+.+.|.+.++.++++ +++.|+.|+.|+..+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~ 48 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE 48 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH
Confidence 6899999999999999999999999999999 579999999987643
No 66
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.30 E-value=6.9e-12 Score=79.70 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=49.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
++.|+++||++|+.+.|.++++++.++ ++.+..+|+++++++++++|+.++|+-
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti 56 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAI 56 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEE
Confidence 678999999999999999999987654 599999999999999999999999874
No 67
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.28 E-value=2e-11 Score=92.69 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=38.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (156)
.|++++|+|||+||++|++++|.+.++.++ ++.++.|+.+++++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~ 110 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQ 110 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHH
Confidence 599999999999999999999999998653 48899999876544
No 68
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.9e-12 Score=107.73 Aligned_cols=62 Identities=23% Similarity=0.550 Sum_probs=53.7
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHH
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSK 142 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~ 142 (156)
++.+. ..+|++++. ..+|-|||.|||||||||+++.|++++|++.|.+ ++.++++|.+.|.-
T Consensus 368 VkvvV-gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~ 431 (493)
T KOG0190|consen 368 VKVVV-GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV 431 (493)
T ss_pred eEEEe-ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC
Confidence 44444 558999986 6899999999999999999999999999999975 69999999987653
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.27 E-value=1.9e-11 Score=87.73 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHH--------hCCccceec
Q 031630 91 LRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVK--------RGNISVSIQ 155 (156)
Q Consensus 91 ~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~--------~~i~sv~~~ 155 (156)
..|+..+|+|+|+|+|+||++|+.+.+.. .++++.+..++.++++|.++.+++++. ||+.++|+-
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 34447899999999999999999998743 456666655799999999998887663 366666653
No 70
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.27 E-value=6.3e-12 Score=87.34 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=45.5
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---CCCHHHHHHhCCccce
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---NKVSKDLVKRGNISVS 153 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---d~~~~l~~~~~i~sv~ 153 (156)
+|++++|+||++||++|+.+.|.++++++++.+++.++.+.- ++..+.++++++..++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence 389999999999999999999999999988866677776632 2344567777776544
No 71
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.27 E-value=2e-11 Score=86.57 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=36.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d 138 (156)
.|++++|+|||+||++|+.+.|.++++.++++ +.++.|+.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYK 64 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECC
Confidence 58999999999999999999999999988763 778887753
No 72
>PTZ00062 glutaredoxin; Provisional
Probab=99.26 E-value=1.3e-11 Score=95.47 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
.+.+++++++. .+...+++.|||+||++|+.+.|.+.+++++|++ +.|+.||.+ |+|.+||+++
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv 67 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFE 67 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEE
Confidence 45678888884 2337789999999999999999999999999974 999999987 9999999764
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.26 E-value=1.2e-11 Score=81.22 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=45.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.|+|||+||++|+.+.|.+++++++++..+.++.+| +.+.+.+||+.++|+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti 53 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGV 53 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEE
Confidence 388999999999999999999999998778887777 3555888999999874
No 74
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.26 E-value=1.9e-11 Score=87.28 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=48.9
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCC------------------------HHHHHHhC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKV------------------------SKDLVKRG 148 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 148 (156)
.|+++||+|||+||++|+.+.|.+.++++++.+ ++.++.|++|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 589999999999999999999999999888752 578888888754 34566788
Q ss_pred Cccceec
Q 031630 149 NISVSIQ 155 (156)
Q Consensus 149 i~sv~~~ 155 (156)
+..+|..
T Consensus 97 v~~~P~~ 103 (131)
T cd03009 97 IEGIPTL 103 (131)
T ss_pred CCCCCEE
Confidence 8777753
No 75
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.26 E-value=1.9e-11 Score=86.63 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=56.1
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeC--CCCh---hHHhhhHHHHHHHHHhcCCeEEEEEECC-----CCHHHHHHh
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KVSKDLVKR 147 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A--~WC~---~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----~~~~l~~~~ 147 (156)
+.+ +.++|++++ ..++.+||.||| |||+ +|+.++|.+.+.+. .+.+++||++ ++.+++++|
T Consensus 4 v~L-~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 4 VDL-DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eEC-ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHh
Confidence 444 466999999 468999999999 9999 88888888777654 3899999994 578899999
Q ss_pred CCc--ccee
Q 031630 148 GNI--SVSI 154 (156)
Q Consensus 148 ~i~--sv~~ 154 (156)
+|. .+|+
T Consensus 75 ~I~~~gyPT 83 (116)
T cd03007 75 KLDKESYPV 83 (116)
T ss_pred CCCcCCCCE
Confidence 999 7775
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.22 E-value=2.6e-11 Score=89.89 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=36.4
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
.++..+|+|||+||++|++++|.+++++++++ +.++.|++|+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~ 90 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDG 90 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCC
Confidence 47778999999999999999999999999985 6677777764
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.22 E-value=6e-11 Score=92.08 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 97 ~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.++ +++.|||+||++|+.+.|.+++++.+++ ++.+..+|.+++++++.+|+|.++|+-
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl 190 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKI 190 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEE
Confidence 445 4555999999999999999999998854 699999999999999999999999974
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=104.83 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC----------------------------CCCHHHHHH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV----------------------------NKVSKDLVK 146 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~----------------------------d~~~~l~~~ 146 (156)
.||++||+|||+||++|+.++|.|++++++++. ++.|+.|+. |.+.++++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 589999999999999999999999999998863 477766643 445678888
Q ss_pred hCCccceec
Q 031630 147 RGNISVSIQ 155 (156)
Q Consensus 147 ~~i~sv~~~ 155 (156)
|+|.++|+.
T Consensus 135 fgV~giPTt 143 (521)
T PRK14018 135 LNISVYPSW 143 (521)
T ss_pred cCCCCcCeE
Confidence 888888865
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.18 E-value=9.1e-11 Score=94.40 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=50.9
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-----------CHHHHHHhCCccceec
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~sv~~~ 155 (156)
-.++++||+|||+||++|+.++|.+++++++|+ +.++.|++|. +..+++++||.++|..
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl 233 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV 233 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence 358999999999999999999999999999986 6777777764 3578899999998864
No 80
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.16 E-value=1.9e-11 Score=98.78 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=53.7
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCcccee
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
+...++|+||||||+||+++.|+|.++.-++++ .+.+.++|++..+.++.++||..+|+
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence 578899999999999999999999999777654 58999999999999999999998875
No 81
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.15 E-value=6e-11 Score=78.65 Aligned_cols=60 Identities=22% Similarity=0.540 Sum_probs=48.9
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHH
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKD 143 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l 143 (156)
.++++.+..|+..+|+++|+|+|+||++|+.+...+ .++.+.+..++.++.+|.++....
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~ 66 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN 66 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence 367888888888999999999999999999998877 455554445799999999875543
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.15 E-value=2.5e-10 Score=85.74 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=49.1
Q ss_pred cchhccccCCCCCCCccce-EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 59 DVRVEALWPDLSRPTSVEL-EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~-~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
...++...|+|.++....- ..+. ...+ ..+++++|+|||+||++|+.+.|.+++++++ ++.++.|+.
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~-~~~~--------~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~ 100 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYT-PEAF--------IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDY 100 (173)
T ss_pred chhcCCCCCCccccccCCCCcccC-HHHh--------cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 3456677888887754321 1221 1111 3689999999999999999999999998763 478888887
Q ss_pred CC
Q 031630 138 NK 139 (156)
Q Consensus 138 d~ 139 (156)
++
T Consensus 101 ~~ 102 (173)
T TIGR00385 101 KD 102 (173)
T ss_pred CC
Confidence 54
No 83
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.14 E-value=7.7e-11 Score=99.37 Aligned_cols=73 Identities=19% Similarity=0.405 Sum_probs=60.2
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHhCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
+..+. ..+|++++. ..+++++|.|||+||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. +++.++|
T Consensus 348 v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 348 VKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred cEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 44444 558888875 5689999999999999999999999999999986 6999999998764 333 8888887
Q ss_pred ec
Q 031630 154 IQ 155 (156)
Q Consensus 154 ~~ 155 (156)
..
T Consensus 422 t~ 423 (462)
T TIGR01130 422 TI 423 (462)
T ss_pred EE
Confidence 53
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1.6e-10 Score=107.58 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC---C------------------------CCHHHHHHh
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV---N------------------------KVSKDLVKR 147 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~---d------------------------~~~~l~~~~ 147 (156)
.||++||+|||+||++|+.+.|.|++++++|++ ++.++.|.. | ...+++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 599999999999999999999999999999976 488888852 2 234566778
Q ss_pred CCccceec
Q 031630 148 GNISVSIQ 155 (156)
Q Consensus 148 ~i~sv~~~ 155 (156)
+|.++|+.
T Consensus 499 ~V~~iPt~ 506 (1057)
T PLN02919 499 GVSSWPTF 506 (1057)
T ss_pred CCCccceE
Confidence 88877764
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.11 E-value=1.1e-10 Score=94.27 Aligned_cols=68 Identities=29% Similarity=0.455 Sum_probs=60.2
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHh----c-CCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF----D-TKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~----~-~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
.++++.++ .++..++|+|||+||+-.+.++|+|++.+..+ + +++++++|||+.+.+++.+|.|..+|+
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPT 75 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPT 75 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCce
Confidence 45778888 46999999999999999999999999988765 4 369999999999999999999998775
No 86
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.11 E-value=2.3e-10 Score=88.83 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCcEEEEEeC---CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 97 SQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 97 ~k~vlV~F~A---~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
+...++.|++ +||++|+.+.|.+++++++++. .+.++.+|.+++++++++|+|.++|+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTI 82 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEE
Confidence 3444666887 9999999999999999999864 2556777777999999999999999753
No 87
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.10 E-value=1.9e-10 Score=88.57 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.|+++||+|||+||++|+.+.|.|.+++++|.+ ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 589999999999999999999999999999975 5999999874
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.2e-10 Score=95.95 Aligned_cols=61 Identities=28% Similarity=0.455 Sum_probs=57.7
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
..+++++|.|||+||++|+.+.|.+++++..+.+.+.++.||++.+.+++.+|+|.+.|+.
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEE
Confidence 5799999999999999999999999999999987899999999999999999999998864
No 89
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=6e-11 Score=102.21 Aligned_cols=82 Identities=18% Similarity=0.360 Sum_probs=65.6
Q ss_pred CCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC---CeEEEEEECC--CCHH
Q 031630 68 DLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVN--KVSK 142 (156)
Q Consensus 68 ~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~---~v~~~~vd~d--~~~~ 142 (156)
....|. .++..+ +.++|+..+. .+.+-.+|.||++|||+|++++|.|++++++... -+.+..|||. .|..
T Consensus 33 tLy~~~-D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~ 107 (606)
T KOG1731|consen 33 TLYSPD-DPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK 107 (606)
T ss_pred cccCCC-CCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh
Confidence 445554 345555 4779999986 3446789999999999999999999999998753 4789999994 4889
Q ss_pred HHHHhCCcccee
Q 031630 143 DLVKRGNISVSI 154 (156)
Q Consensus 143 l~~~~~i~sv~~ 154 (156)
+|++|+|+..|.
T Consensus 108 lCRef~V~~~Pt 119 (606)
T KOG1731|consen 108 LCREFSVSGYPT 119 (606)
T ss_pred hHhhcCCCCCce
Confidence 999999998764
No 90
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.05 E-value=3.9e-10 Score=81.67 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=42.1
Q ss_pred CCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHH
Q 031630 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK 142 (156)
Q Consensus 96 ~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~ 142 (156)
.||+++|+||++ |||+|+...|.+.++++.|.+ ++.++.|..+.++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 699999999999 999999999999999988765 59999999887654
No 91
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.03 E-value=1.1e-09 Score=74.18 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+..-+.-|+++||++|....+.++++++.++ ++.+..+|.++.++++.+|||.++|..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~ 69 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAI 69 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEE
Confidence 35557788899999999999999999998876 599999999999999999999999875
No 92
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.03 E-value=1e-09 Score=83.69 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=45.0
Q ss_pred chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031630 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (156)
Q Consensus 60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd 136 (156)
..++...|++.+++..+ ..+...+ .. ..|++++|+|||+||++|+.+.|.+.++.++++ +.++.++
T Consensus 46 ~~vG~~aP~f~l~d~~G-~~v~l~~----~~----~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is 111 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDG-EPVRIGG----SI----APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS 111 (189)
T ss_pred CCCCCcCCCcEecCCCC-CEEeccc----hh----cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 45566777887765422 2232111 00 358999999999999999999999999987654 3444444
No 93
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.01 E-value=9.1e-10 Score=79.50 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=46.9
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d 138 (156)
.|....++++.++.|+..+|+++|+|+++||++|+++...+ .++.+....++..+.++.+
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d 67 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE 67 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence 35555689999999989999999999999999999998775 4444444435777777765
No 94
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.8e-10 Score=92.63 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=86.6
Q ss_pred hcccccccCCccCCCCCccccccCC-ceEEEeCCCccccccccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcC
Q 031630 18 REGKQQFQQPWSSGSSSCLLLQKNS-AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQEL 96 (156)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~ 96 (156)
+++-...+..|.+.|+|++.+-+.. ....+.+....+................... .++... +.++|+..+. ..
T Consensus 87 ~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l-~~~~~~~~~~---~~ 161 (383)
T KOG0191|consen 87 CDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVE-GEVFEL-TKDNFDETVK---DS 161 (383)
T ss_pred chhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccC-CceEEc-cccchhhhhh---cc
Confidence 3343445667899999999766555 2233333211111111111111111111111 123344 4567887775 46
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~--~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
+..++|.||||||++|+.++|.+++++..+. ..+.++.+|++....++.+++|.+.|+.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~ 222 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTL 222 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceE
Confidence 8889999999999999999999999999885 4699999999999999999999988763
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.00 E-value=1.5e-09 Score=73.66 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCC-----------------------HHHHHHhCCcc
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS 151 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~i~s 151 (156)
.+++++|.||++||++|+...+.+.++.+++. .++.++.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 48999999999999999999999999999985 3599999999886 56677777766
Q ss_pred cee
Q 031630 152 VSI 154 (156)
Q Consensus 152 v~~ 154 (156)
+|.
T Consensus 98 ~P~ 100 (116)
T cd02966 98 LPT 100 (116)
T ss_pred cce
Confidence 553
No 96
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.98 E-value=2.1e-09 Score=79.75 Aligned_cols=45 Identities=16% Similarity=0.555 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (156)
.+++++|+||++||++|+...|.+.++++++.+ ++.++.|++++.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 589999999999999999999999999999975 488999998643
No 97
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.97 E-value=1.7e-09 Score=79.50 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=38.5
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.||+++|+|||+||+ |+.+.|.|++++++|.+ ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 489999999999999 99999999999999974 6999999874
No 98
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.97 E-value=1.8e-09 Score=72.36 Aligned_cols=58 Identities=29% Similarity=0.561 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhC--Ccccee
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRG--NISVSI 154 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-~~~~l~~~~~--i~sv~~ 154 (156)
+++++++||++||++|+.+.|.+.++++++...+.++.+|.. ..+++...++ +..++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 92 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPT 92 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCe
Confidence 789999999999999999999999999999766899999997 7889888888 666553
No 99
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.97 E-value=1.4e-09 Score=85.85 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.|+++||+|||+||++|+.+.|.|.+++++|.+ ++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 489999999999999999999999999999975 5999999975
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.97 E-value=1.9e-09 Score=76.58 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~ 137 (156)
.|++++|+|||+||++|+...|.|+++++++.+ ++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 489999999999999999999999999999975 589999876
No 101
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.92 E-value=3.1e-09 Score=78.08 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=39.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~ 137 (156)
.||++||+|||+||++|+...|.+.+++++|++ ++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 589999999999999999999999999999975 699999996
No 102
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=1e-09 Score=75.97 Aligned_cols=62 Identities=16% Similarity=0.343 Sum_probs=46.0
Q ss_pred hcCCCcEEEEEeCCCChhHHhhhHHHHHH---HHHhcCCeEEEEEECCCC--------------------HHHHHHhCCc
Q 031630 94 QELSQPILIDWMASWCRKCIYLKPKLEKL---AAEFDTKLKFYYVDVNKV--------------------SKDLVKRGNI 150 (156)
Q Consensus 94 ~~~~k~vlV~F~A~WC~~Ck~~~p~l~~l---a~~~~~~v~~~~vd~d~~--------------------~~l~~~~~i~ 150 (156)
+.++++++|.||++||+.|+++.+.+.+. ...+.+++.++.++++.. .++++.+||.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 36799999999999999999999999854 444444688999998753 3578889988
Q ss_pred cceec
Q 031630 151 SVSIQ 155 (156)
Q Consensus 151 sv~~~ 155 (156)
+.|+.
T Consensus 82 gtPt~ 86 (112)
T PF13098_consen 82 GTPTI 86 (112)
T ss_dssp SSSEE
T ss_pred ccCEE
Confidence 88764
No 103
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.89 E-value=4.6e-09 Score=73.74 Aligned_cols=57 Identities=19% Similarity=0.432 Sum_probs=43.3
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC---------------------CCCHHHHHHhCCcccee
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNISVSI 154 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~---------------------d~~~~l~~~~~i~sv~~ 154 (156)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+|- |.+.++++.|++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 57999999999999999999999999987743 33333322 23456778888887775
No 104
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.88 E-value=2.9e-09 Score=81.19 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEE------EEEECCCCHHH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNKVSKD 143 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~------~~vd~d~~~~l 143 (156)
.||+.+|+|||+||++|+.++|.+++++.+ ++.+ +.||.|+...-
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~ 108 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVG 108 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhh
Confidence 699999999999999999999999999653 4677 88998875433
No 105
>PLN02412 probable glutathione peroxidase
Probab=98.87 E-value=4.2e-09 Score=78.82 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.||++||+|||+||++|+.+.|.|.++.++|.+ ++.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 489999999999999999999999999999975 5999999975
No 106
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.87 E-value=8.8e-09 Score=72.12 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=58.8
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC--CCHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN--KVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d--~~~~l~~~~~i~sv~~~ 155 (156)
.|++.+..|+..+|+++|+|+++||++|+.+.... +++.+.+..++.++.+|++ +..+++..|++.++|+-
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 67888888888999999999999999999997643 5566666557889999997 46688999999998864
No 107
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.85 E-value=9.6e-09 Score=76.81 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=58.8
Q ss_pred ccchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031630 58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (156)
Q Consensus 58 r~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd 136 (156)
.....+...|++.++.. ....+... ++ .||+++|+||++| |++|..+.|.|.++++++. ++.++.|+
T Consensus 16 ~~~~~G~~~P~f~l~~~-~g~~v~l~-~~---------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs 83 (167)
T PRK00522 16 SLPQVGDKAPDFTLVAN-DLSDVSLA-DF---------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCIS 83 (167)
T ss_pred CCCCCCCCCCCeEEEcC-CCcEEehH-Hh---------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEe
Confidence 34456777788877653 22334322 23 4899999999999 9999999999999999985 69999999
Q ss_pred CCCC---HHHHHHhCCc
Q 031630 137 VNKV---SKDLVKRGNI 150 (156)
Q Consensus 137 ~d~~---~~l~~~~~i~ 150 (156)
.|.. .+.++++++.
T Consensus 84 ~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 84 ADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 8753 3445555553
No 108
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.84 E-value=5.2e-09 Score=79.54 Aligned_cols=37 Identities=19% Similarity=0.528 Sum_probs=33.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
+|+|||+||++|+++.|.+++++++|+ +.++.|++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~ 109 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDG 109 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCC
Confidence 778999999999999999999999985 7888888764
No 109
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.80 E-value=1.6e-08 Score=72.98 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCC-ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~A~W-C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
.||+++|+||++| |++|+...|.|.++++++. ++.++.|+.|..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~ 69 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP 69 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence 4899999999999 6999999999999999986 699999998763
No 110
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.74 E-value=2.1e-08 Score=87.20 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=58.4
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHH---HHHHHhcCCeEEEEEECCCC----HHHHHHhCCc
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV----SKDLVKRGNI 150 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~---~la~~~~~~v~~~~vd~d~~----~~l~~~~~i~ 150 (156)
..+.+..++++.+++ +.+|||++||||+||-.||.+++..- +...+.. ++++.++|.+++ .++.++|++.
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 556666689999975 44569999999999999999999863 3344444 599999999753 3667899999
Q ss_pred cceec
Q 031630 151 SVSIQ 155 (156)
Q Consensus 151 sv~~~ 155 (156)
++|+-
T Consensus 534 G~P~~ 538 (569)
T COG4232 534 GVPTY 538 (569)
T ss_pred CCCEE
Confidence 98864
No 111
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.73 E-value=3.4e-08 Score=69.08 Aligned_cols=68 Identities=16% Similarity=0.356 Sum_probs=52.5
Q ss_pred ccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031630 63 EALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (156)
Q Consensus 63 ~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (156)
|..+|++.+++.. ...++. +++ .|++++|.||++ ||++|+...+.+.++.++++. ++.++.|+.+..
T Consensus 2 G~~~P~f~l~~~~-g~~~~l-~~l---------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 2 GDKAPDFTLTDSD-GKTVSL-SDL---------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TSBGGCEEEETTT-SEEEEG-GGG---------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred cCCCCCcEeECCC-CCEEEH-HHH---------CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 4566777666543 233432 233 489999999999 999999999999999999875 699999999764
Q ss_pred H
Q 031630 141 S 141 (156)
Q Consensus 141 ~ 141 (156)
.
T Consensus 71 ~ 71 (124)
T PF00578_consen 71 E 71 (124)
T ss_dssp H
T ss_pred c
Confidence 4
No 112
>smart00594 UAS UAS domain.
Probab=98.72 E-value=7.6e-08 Score=68.44 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=58.5
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~ 155 (156)
..+++.+..|+..+|+++|+|+++||++|+.+.... .++.+.+..++.+..+|++. ..+++..|++.++|+-
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 378888888888999999999999999999997654 44555555568998999864 5678999999998863
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.69 E-value=4.2e-08 Score=74.35 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.||++ |+.+||+||++|+.++|.|++++++|.+ ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 48865 4556999999999999999999999975 5999999874
No 114
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.68 E-value=8.6e-08 Score=69.00 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCcEEEE-EeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHH
Q 031630 97 SQPILID-WMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKD 143 (156)
Q Consensus 97 ~k~vlV~-F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l 143 (156)
+++++|. ||++||++|+...|.|.++.+++.+ ++.++.|+.+.....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 4555555 5699999999999999999999853 699999998865443
No 115
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.66 E-value=6.8e-08 Score=73.50 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=52.2
Q ss_pred hhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031630 61 RVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD 136 (156)
Q Consensus 61 ~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd 136 (156)
.++...|+|.+++. .....+.. .+| .||++||+|| ++||++|..+.|.|.++.+++.+ ++.++.|+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl-~d~---------~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS 72 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTD-EDV---------KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVS 72 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecH-HHH---------CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34566778877752 12223432 233 5899999999 99999999999999999998863 68899998
Q ss_pred CCCC
Q 031630 137 VNKV 140 (156)
Q Consensus 137 ~d~~ 140 (156)
.|..
T Consensus 73 ~D~~ 76 (187)
T TIGR03137 73 TDTH 76 (187)
T ss_pred CCCH
Confidence 8763
No 116
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.64 E-value=1.8e-07 Score=69.70 Aligned_cols=44 Identities=14% Similarity=0.369 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~ 139 (156)
.++++||.||++||+.|..+.|.+.++.+++.+ ++.|+.|+.|.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 589999999999999999999999999999974 69999998864
No 117
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.58 E-value=1.2e-07 Score=68.68 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=38.6
Q ss_pred C-CcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031630 97 S-QPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (156)
Q Consensus 97 ~-k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (156)
| ++++|.|| ++||+.|....|.++++.+++.+ ++.++.|+.+..
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 5 88888887 99999999999999999999964 699999988753
No 118
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.3e-08 Score=74.79 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=64.9
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcc
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS 151 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~s 151 (156)
..+..+..+.+++.+.+ +..+.++|.|+|.|.+.|+...|.+.+++.+|.. .+.|++||+...++.+.+|+|..
T Consensus 125 ~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~ 199 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISL 199 (265)
T ss_pred heeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeecc
Confidence 45666667778888865 6678899999999999999999999999999975 59999999999999999999874
No 119
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.57 E-value=1.7e-07 Score=67.16 Aligned_cols=44 Identities=14% Similarity=0.401 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhcC----CeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~~----~v~~~~vd~d~ 139 (156)
.|++++|.||++||++ |....|.+.++.+++.+ ++.++.|+.|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4899999999999998 99999999999998864 39999998864
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.55 E-value=2.5e-07 Score=55.22 Aligned_cols=54 Identities=31% Similarity=0.471 Sum_probs=43.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCccceec
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSIQ 155 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~~ 155 (156)
++.||++||++|+.+.+.+.++ +....++.+..+|++...+... .+++.++|..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 57 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTL 57 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEE
Confidence 4789999999999999999998 4444469999999998776654 6787777753
No 121
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.54 E-value=1.9e-07 Score=69.88 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=40.4
Q ss_pred CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031630 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (156)
.|+++||+|| ++||++|....|.|.++++++.+ ++.++.|+.|..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 4899999999 89999999999999999999964 689999998764
No 122
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.52 E-value=2.5e-07 Score=70.55 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.||++||.|||+||+.|+ ..|.|++++++|.+ ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 589999999999999997 58999999999975 6999999885
No 123
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.51 E-value=1.7e-07 Score=69.46 Aligned_cols=45 Identities=18% Similarity=0.477 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCC---eEEEEEECCCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~---v~~~~vd~d~~ 140 (156)
.||.|.+.|.|.||+|||.+-|++.+++++..++ +.++-|+.|.+
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 5899999999999999999999999999888654 88888888764
No 124
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.49 E-value=4.1e-07 Score=57.50 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=39.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCccceec
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISVSIQ 155 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~sv~~~ 155 (156)
+..|+++||++|++..+.|++. ++.+..+|++++++ +.+.+|+.++|+-
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~ 54 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVI 54 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEE
Confidence 4679999999999999888652 47888999987665 4566899998864
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.45 E-value=4.1e-07 Score=59.52 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=40.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH-----HHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-----DLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~-----l~~~~~i~sv~~ 154 (156)
++.|+++||++|+.+.+.++++. .++.+.++.+|.+++.+ +.+.+|+.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCe
Confidence 46799999999999999999986 33347888888875543 555568878775
No 126
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.44 E-value=3.9e-07 Score=68.13 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHh
Q 031630 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKR 147 (156)
Q Consensus 87 ~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~~~~ 147 (156)
++.++.|+.++|+++|+++++||..|+.|... | .++++.++.++.-++||.++.|++...|
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y 90 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIY 90 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHH
Confidence 45555556789999999999999999999853 3 5566666656899999999999998877
No 127
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.44 E-value=6.1e-07 Score=57.64 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=37.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh-----CCccceec
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISVSIQ 155 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~-----~i~sv~~~ 155 (156)
++.||++||++|+++++.|.++. +.+-.+|++++++....+ ++.++|+-
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i 55 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV 55 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE
Confidence 56799999999999999987653 456678888777665553 78888763
No 128
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.40 E-value=6.6e-07 Score=65.43 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=50.6
Q ss_pred hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCC-CChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~-WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
..+...|++..+...+ ..+. ..++ .|+++||+||++ ||+.|....+.+.++.+++.+ ++.++.|+.|
T Consensus 5 ~~g~~~p~f~l~~~~G-~~~~-l~~~---------~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 5 KAGDIAPKFSLPDQDG-EQVS-LTDF---------QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCcCCCcEeeCCCC-CEEe-HHHh---------CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3455666776655322 2332 2222 589999999986 678899999999999998864 5999999987
Q ss_pred CCHH
Q 031630 139 KVSK 142 (156)
Q Consensus 139 ~~~~ 142 (156)
...+
T Consensus 74 ~~~~ 77 (154)
T PRK09437 74 KPEK 77 (154)
T ss_pred CHHH
Confidence 6433
No 129
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.39 E-value=1.5e-06 Score=61.88 Aligned_cols=75 Identities=16% Similarity=0.398 Sum_probs=50.3
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH------HHHH--
Q 031630 81 NDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLV-- 145 (156)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlV~F~A-------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~------~l~~-- 145 (156)
...++|.+.+.....++++++|.|++ +|||.|+...|.+++.-...+.+..|+.|.+.+-+ .--+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 34567888887555678999999986 59999999999999988877767899999885422 1223
Q ss_pred -HhCCccceec
Q 031630 146 -KRGNISVSIQ 155 (156)
Q Consensus 146 -~~~i~sv~~~ 155 (156)
++++.+||+-
T Consensus 83 p~~~l~~IPTL 93 (119)
T PF06110_consen 83 PDLKLKGIPTL 93 (119)
T ss_dssp -CC---SSSEE
T ss_pred ceeeeeecceE
Confidence 3788888763
No 130
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.38 E-value=6.1e-07 Score=68.56 Aligned_cols=70 Identities=9% Similarity=0.071 Sum_probs=52.3
Q ss_pred hhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031630 61 RVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD 136 (156)
Q Consensus 61 ~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd 136 (156)
.++..+|+|..+.. .....++. .++ .||++++.|| ++||+.|..+.+.|.++.+++.+ ++.++.|+
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L-~d~---------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS 72 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTE-KDT---------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVS 72 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEH-HHh---------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45666777776654 22333321 122 5889999999 99999999999999999999964 68999999
Q ss_pred CCCC
Q 031630 137 VNKV 140 (156)
Q Consensus 137 ~d~~ 140 (156)
.|..
T Consensus 73 ~D~~ 76 (187)
T PRK10382 73 TDTH 76 (187)
T ss_pred CCCH
Confidence 8763
No 131
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.34 E-value=9.9e-07 Score=68.76 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=53.0
Q ss_pred cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031630 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD 136 (156)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd 136 (156)
...++..+|+|..++... .+...+.+ .||+++| .||++||+.|..+.+.|.++++++.. ++.++.|+
T Consensus 6 ~~~iG~~aPdF~l~~~~G--~~~l~~~~---------~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS 74 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHG--KIKLPDDY---------KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLS 74 (215)
T ss_pred cccCCCcCCCCEeecCCC--CEEcHHHh---------CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345677788887775432 22222222 4777665 88999999999999999999999963 69999999
Q ss_pred CCCCH
Q 031630 137 VNKVS 141 (156)
Q Consensus 137 ~d~~~ 141 (156)
+|...
T Consensus 75 ~Ds~~ 79 (215)
T PRK13191 75 VDSNI 79 (215)
T ss_pred CCCHH
Confidence 98643
No 132
>PRK15000 peroxidase; Provisional
Probab=98.32 E-value=1.1e-06 Score=67.68 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred hccccCCCCCCCccc-eEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 62 VEALWPDLSRPTSVE-LEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 62 ~~~~~~~~~~p~~~~-~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
++..+|+|..++... ...+. .-++.+.. .|+++++.||+ +||+.|..+.|.|.++++++.. ++.++.|++|
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~-~~~l~~~~-----~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVD-KFNFKQHT-----NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCcCCCCEeecccCCCceee-eeeHHHHh-----CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 566677776664311 11111 11332222 58999999999 5999999999999999999974 6999999998
Q ss_pred CC
Q 031630 139 KV 140 (156)
Q Consensus 139 ~~ 140 (156)
..
T Consensus 78 ~~ 79 (200)
T PRK15000 78 SE 79 (200)
T ss_pred CH
Confidence 53
No 133
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.31 E-value=1.5e-06 Score=62.15 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCH
Q 031630 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS 141 (156)
Q Consensus 96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~ 141 (156)
.|++++|.|| +.||+.|....|.+.++.+++.+ ++.++.|..+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~ 69 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVE 69 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 4899999999 58999999999999999988864 5899999887543
No 134
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.30 E-value=1.3e-06 Score=67.38 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=49.4
Q ss_pred hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.++..+|+|..+.... .+. ..++ .|+++++ .||++||+.|..+.+.|.++++++.+ ++.++.|++|
T Consensus 3 ~vG~~aP~F~~~~~~g--~v~-l~d~---------~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D 70 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG--PID-LSKY---------KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD 70 (202)
T ss_pred CCCCCCCCcEEecCCC--cEe-HHHh---------CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456667777665322 222 1122 4776665 68999999999999999999999864 6899999998
Q ss_pred CC
Q 031630 139 KV 140 (156)
Q Consensus 139 ~~ 140 (156)
..
T Consensus 71 ~~ 72 (202)
T PRK13190 71 SI 72 (202)
T ss_pred CH
Confidence 63
No 135
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.29 E-value=1.7e-06 Score=67.43 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred hhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 61 ~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
+++..+|+|..++... . +...+++ .|+++ |+.|||+||+.|..+.+.|.++++++.. ++.++.|++|
T Consensus 3 ~~Gd~aPdF~l~t~~G-~-~~~~~~~---------~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D 71 (215)
T PRK13599 3 LLGEKFPSMEVVTTQG-V-KRLPEDY---------AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD 71 (215)
T ss_pred CCCCCCCCCEeECCCC-c-EecHHHH---------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4566778887765432 1 2222233 47764 6799999999999999999999999964 6999999998
Q ss_pred CC
Q 031630 139 KV 140 (156)
Q Consensus 139 ~~ 140 (156)
..
T Consensus 72 ~~ 73 (215)
T PRK13599 72 QV 73 (215)
T ss_pred CH
Confidence 74
No 136
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.28 E-value=2e-06 Score=61.35 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhc-CCeEEEEEECCCC
Q 031630 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV 140 (156)
Q Consensus 96 ~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~ 140 (156)
.|++++|.|| +.||+.|....|.+.++++++. .++.|+.|..+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 4899999999 7899999999999999999984 3689999998753
No 137
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.22 E-value=3e-06 Score=67.91 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=53.4
Q ss_pred ccccchhccccCCCCCCCc--cceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeE
Q 031630 56 ARRDVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLK 131 (156)
Q Consensus 56 ~~r~~~~~~~~~~~~~p~~--~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~ 131 (156)
..+...++..+|+|.++.. .....+. +.+.. .|+++|+.|| ++||++|..+.|.|.++++++.+ ++.
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vs----Lsd~~-----kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~ 134 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFN----SSDYF-----KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVK 134 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEe----HHHHc-----CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 3444567777777776542 1112232 22222 4778888887 99999999999999999999964 589
Q ss_pred EEEEECCC
Q 031630 132 FYYVDVNK 139 (156)
Q Consensus 132 ~~~vd~d~ 139 (156)
++.|++|.
T Consensus 135 VigIS~Ds 142 (261)
T PTZ00137 135 VLGVSVDS 142 (261)
T ss_pred EEEEECCC
Confidence 99999986
No 138
>PRK13189 peroxiredoxin; Provisional
Probab=98.20 E-value=2.7e-06 Score=66.62 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=51.9
Q ss_pred chhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcE-EEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEEC
Q 031630 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (156)
Q Consensus 60 ~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~v-lV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~ 137 (156)
+.++..+|+|..++... .+...+.+ .|+++ |+.||++||+.|..+.+.|.++++++.. ++.++.|++
T Consensus 9 ~~vG~~aPdF~~~~~~g--~~~l~d~~---------~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~ 77 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHG--PIKLPDDY---------KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSI 77 (222)
T ss_pred ccCCCcCCCcEeEcCCC--CEeeHHHh---------CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45677888888776432 12222222 47754 5588999999999999999999999964 689999999
Q ss_pred CCCH
Q 031630 138 NKVS 141 (156)
Q Consensus 138 d~~~ 141 (156)
|...
T Consensus 78 D~~~ 81 (222)
T PRK13189 78 DQVF 81 (222)
T ss_pred CCHH
Confidence 8643
No 139
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=7.9e-06 Score=57.88 Aligned_cols=58 Identities=19% Similarity=0.458 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHhhcCCCcEEEEEeC--------CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 81 NDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlV~F~A--------~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
...+.|++.++.. .+++.++|.|++ ||||.|.+..|.+.+..+..+.++.|+.|++.+
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 4456777777653 356779999997 799999999999999998888789999999965
No 140
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.14 E-value=4.5e-06 Score=64.29 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=37.1
Q ss_pred Cc-EEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCC
Q 031630 98 QP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (156)
Q Consensus 98 k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (156)
++ +|+.||++||+.|..+.+.|.++++++.+ ++.++.|++|..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~ 70 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV 70 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 54 45689999999999999999999999964 699999998863
No 141
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.07 E-value=5.9e-06 Score=59.58 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=42.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh---CCccceecC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISVSIQI 156 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~i~sv~~~~ 156 (156)
..+..++-|..+|||.|...-|.+.++++..+ ++.+-.+..|+++++..+| |..+||+.|
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I 102 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFI 102 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEE
Confidence 45667888999999999999999999999865 5787778888888887665 677887754
No 142
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.03 E-value=1.1e-05 Score=61.88 Aligned_cols=72 Identities=6% Similarity=0.096 Sum_probs=52.1
Q ss_pred chhccccCCCCCCCc---cceEecCChhhHHHHHHHhhcCCCcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031630 60 VRVEALWPDLSRPTS---VELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYY 134 (156)
Q Consensus 60 ~~~~~~~~~~~~p~~---~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~-~v~~~~ 134 (156)
..++..+|+|..++. .....+. ..++ .|++++|.||+ +||+.|..+.+.|.++++++.+ ++.++.
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~-l~d~---------~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~ 75 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKIS-LSSY---------KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLA 75 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEe-HHHH---------CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345667777775442 1222332 1223 48999999995 8899999999999999999974 699999
Q ss_pred EECCCCH
Q 031630 135 VDVNKVS 141 (156)
Q Consensus 135 vd~d~~~ 141 (156)
|++|...
T Consensus 76 IS~d~~~ 82 (199)
T PTZ00253 76 CSMDSEY 82 (199)
T ss_pred EeCCCHH
Confidence 9998643
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.01 E-value=3.4e-05 Score=60.17 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC-----------CCHHHHHHhCCcccee
Q 031630 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----------KVSKDLVKRGNISVSI 154 (156)
Q Consensus 86 ~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d-----------~~~~l~~~~~i~sv~~ 154 (156)
-++++.. ..++.-|+.||.+.|+.|..+.|++..++++|+ +.++.|++| .+..+++++||..+|.
T Consensus 111 ~~~~l~~--la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pa 186 (215)
T PF13728_consen 111 RDKALKQ--LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPA 186 (215)
T ss_pred HHHHHHH--HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCE
Confidence 3444444 347888999999999999999999999999995 788888887 4688999999987764
No 144
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.2e-06 Score=65.14 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=60.9
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
..+....+| .. ..++.+++.|||+||.+|+.+.-.+..+++... ++.+++.+.+..++++..+.+..++..
T Consensus 4 ~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~ 74 (227)
T KOG0911|consen 4 QFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYF 74 (227)
T ss_pred eeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCcee
Confidence 445556666 22 368999999999999999999999999999884 699999999999999999999888764
No 145
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.92 E-value=4e-05 Score=50.74 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=41.4
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHhC--Ccccee
Q 031630 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRG--NISVSI 154 (156)
Q Consensus 100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~--i~sv~~ 154 (156)
-++.|+.+||+.|++....|+++..++. ++.+..+|++.++ ++....+ +.++|+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ 61 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQ 61 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCE
Confidence 4678999999999999999999987764 5889999998653 4444344 366664
No 146
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.86 E-value=2.2e-06 Score=67.20 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=57.2
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCcccee
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
.+.| +.+++..++. |. .+|.|+|+|||.|+.+.|.++..+.--.+ +|.+.+||+..++-+.-+|-++.+++
T Consensus 26 ~~~~-~eenw~~~l~-----ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 26 LTRI-DEENWKELLT-----GE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred eEEe-cccchhhhhc-----hH-HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence 4444 4668888882 44 68999999999999999999998865444 69999999999998888887776654
No 147
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.81 E-value=8e-05 Score=46.67 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=35.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh----CCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR----GNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~----~i~sv~~ 154 (156)
++.|+++||++|+.+.+.+.+. ++.+..+|++.+++....+ ++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCE
Confidence 5779999999999998888762 3677788888766555444 5666664
No 148
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.78 E-value=0.00012 Score=52.98 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=54.8
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeC--CCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhCCccceec
Q 031630 84 DHLDQILLRAQELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A--~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
++++..+. .+...++.|-. .-++.+-...-++++++++|++ ++.|++||+|++++++.+|||.++|+.
T Consensus 25 ~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTL 95 (132)
T PRK11509 25 SRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPAT 95 (132)
T ss_pred ccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEE
Confidence 56777774 34444554443 4578899999999999999984 599999999999999999999999975
No 149
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.70 E-value=0.0001 Score=47.86 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----KDLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~~i~sv~~ 154 (156)
++.|+++|||+|+...+.|+++.. .+.++.+|.+++. .+.+..|..++|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCe
Confidence 477999999999999999999755 3567788877652 2334457777764
No 150
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.66 E-value=0.0002 Score=46.52 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=40.1
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
|.+++++|+.|..+...+++++..++ +.+--+|..+.+++ .+|||.++|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPa 52 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPA 52 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCE
Confidence 34468889999999999999999884 66766777666676 9999999985
No 151
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.60 E-value=0.00032 Score=49.59 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCC----CChhHHhhh--HHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCccceec
Q 031630 85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~----WC~~Ck~~~--p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~sv~~~ 155 (156)
.+++.+..|+.++|+++|+++++ ||..|+... |.+.+.. +.++.+.+.|++. ..+++..+++.+.|+-
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 57788888888999999999999 999997763 5555544 3468999999975 4578889999998873
No 152
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.59 E-value=0.00017 Score=48.05 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=39.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHhCC--cccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRGN--ISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~----~l~~~~~i--~sv~~ 154 (156)
++.|+.+|||.|++.+..|+++..++. ++.+..+|++... ++.+..|- .+||+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ 60 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQ 60 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCe
Confidence 577999999999999999999876654 3778888887532 45555553 67764
No 153
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.53 E-value=0.00037 Score=42.94 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=36.0
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~ 154 (156)
++.|+.+||++|++.+..|++. ++.+-.+|+++.++..+. .|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCE
Confidence 4679999999999999988442 378888888876544332 38888775
No 154
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.52 E-value=0.00032 Score=43.59 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=35.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~~ 154 (156)
++.|+++||++|+...+.|.+.. +.+..+|++++++... ..+..++|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence 46789999999999999998763 6677888887664433 345556653
No 155
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.51 E-value=0.00035 Score=45.69 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHhCCcccee
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISVSI 154 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---~~l~~~~~i~sv~~ 154 (156)
.+.-++.|+.+||+.|++.+..|++. ++.+..+|+++. .++....|..++|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~ 60 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQ 60 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCe
Confidence 44456779999999999999999753 366777888665 34444467777775
No 156
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.51 E-value=0.00068 Score=47.21 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=50.7
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC----CHHHHHHhCCcc
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNIS 151 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~----~~~l~~~~~i~s 151 (156)
..|++.+++++++.. ...++++|.=.++.||-.......|++.....++.+.++.+|+-+ ...+++++||.=
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 467889999999975 458898888899999999999999999998887669999999976 457788999863
No 157
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.46 E-value=0.00063 Score=54.48 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC-----------HHHHHHhCCcccee
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-----------SKDLVKRGNISVSI 154 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~-----------~~l~~~~~i~sv~~ 154 (156)
.++.-|+.||.+-|+.|.++.|+++.++++|+ +.++.|++|-. ...++++|+..+|.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 46789999999999999999999999999986 77888877753 55788999987663
No 158
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.45 E-value=0.0014 Score=47.26 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=58.9
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
.+.+.-+.++++.. ...+.++|-|.-+|=+.|-++...+.+.+++..+-..++-||+++.|+..+-|.+.
T Consensus 4 ~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~ 73 (133)
T PF02966_consen 4 HLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY 73 (133)
T ss_dssp EE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-
T ss_pred ccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC
Confidence 45667788888875 68999999999999999999999999999999876899999999999988888776
No 159
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.34 E-value=0.00062 Score=43.57 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=36.9
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHh---CCcccee
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISVSI 154 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~---~i~sv~~ 154 (156)
..|+.++|+.|++.+..|++. ++.+-.+|++++++....+ |..+||+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCE
Confidence 468899999999999998752 4788889998877666555 7777775
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.34 E-value=0.0006 Score=48.79 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
+++++|+.|+.++||+|+.+.|.++++..+++ ++.++..+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 47889999999999999999999999887776 455555554
No 161
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0011 Score=49.43 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=60.8
Q ss_pred cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEEEE
Q 031630 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD 136 (156)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd 136 (156)
.+.++..+|+|.+|.... ..|... ++ .|++||+.|| ..|+|-|-.++-.|.+...++.. ++.+++|.
T Consensus 3 ~l~~G~~aPdF~Lp~~~g-~~v~Ls-d~---------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS 71 (157)
T COG1225 3 MLKVGDKAPDFELPDQDG-ETVSLS-DL---------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGIS 71 (157)
T ss_pred cCCCCCcCCCeEeecCCC-CEEehH-Hh---------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 356788899999997643 223322 33 5889999999 79999999999999999988875 68999999
Q ss_pred CCC---CHHHHHHhCCc
Q 031630 137 VNK---VSKDLVKRGNI 150 (156)
Q Consensus 137 ~d~---~~~l~~~~~i~ 150 (156)
.|. ....+++++..
T Consensus 72 ~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 72 PDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 886 33445555544
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.23 E-value=0.0013 Score=57.93 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCCcEEEEE-eCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 96 LSQPILIDW-MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 96 ~~k~vlV~F-~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
-++++-|.+ .+++|+.|......+++++.+.+ ++..--+|..+.++++.+|+|++||.
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~ 532 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPA 532 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCE
Confidence 467765554 79999999999999999998876 59999999999999999999999985
No 163
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.23 E-value=0.00077 Score=43.66 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=34.7
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~ 154 (156)
++.|+.+||+.|++....|++. ++.+-.+|++.+++..++ .|..++|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCE
Confidence 3568899999999999999863 356677788776655443 36666664
No 164
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.0024 Score=45.87 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=60.1
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccc
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISV 152 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv 152 (156)
+.+..+.++.+.. ...+.++|-|.-+|=|.|..+...+.+.++...+-+.++-||+++.++..+-|++...
T Consensus 8 L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p 78 (142)
T KOG3414|consen 8 LHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDP 78 (142)
T ss_pred cccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCC
Confidence 4556677777764 5689999999999999999999999999999886578888999999999888877643
No 165
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.16 E-value=0.001 Score=51.05 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
....+|.+..+|=+.+. ....|++-||-+--..|+.+..+|+.||+.+-+ ..|++||+...|=++.+++|.-+|+
T Consensus 66 G~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred ceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeee
Confidence 45677776666666663 578899999999999999999999999999985 8999999999999999999988876
No 166
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.15 E-value=0.0011 Score=48.87 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=50.2
Q ss_pred ccccCCCCCCCcc--ceEecCChhhHHHHHHHhhcCCCcEEE-EEeCCCChhHHhh-hHHHHHHHHHhcC-Ce-EEEEEE
Q 031630 63 EALWPDLSRPTSV--ELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYL-KPKLEKLAAEFDT-KL-KFYYVD 136 (156)
Q Consensus 63 ~~~~~~~~~p~~~--~~~~i~~~~~~~~~l~~a~~~~k~vlV-~F~A~WC~~Ck~~-~p~l~~la~~~~~-~v-~~~~vd 136 (156)
+..+|+|.++... ....+. +.+.+ .|++++| .|.+.||+.|-.+ .+.|.+..+++.. ++ .++.|.
T Consensus 2 G~~aPdF~l~~~~~~~g~~v~----L~~~~-----~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS 72 (155)
T cd03013 2 GDKLPNVTLFEYVPGPPNPVN----LSELF-----KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVS 72 (155)
T ss_pred CCcCCCeEeeeeccCCCceee----HHHHh-----CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEE
Confidence 4456777776532 122332 33322 3555554 4559999999999 9999999988863 56 588888
Q ss_pred CCC---CHHHHHHhCC
Q 031630 137 VNK---VSKDLVKRGN 149 (156)
Q Consensus 137 ~d~---~~~l~~~~~i 149 (156)
.|. ..+.++++++
T Consensus 73 ~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 73 VNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 876 3345556665
No 167
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.14 E-value=0.0023 Score=51.02 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=45.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-----------CHHHHHHhCCccce
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNISVS 153 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~sv~ 153 (156)
.++.-|+.||.+-|+.|.++.|+++.++++|+ +.++.|++|- +...+.++||..+|
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P 208 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP 208 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence 36688999999999999999999999999987 6777776653 23456778887665
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.05 E-value=0.0027 Score=41.91 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=36.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH---HhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV---KRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~---~~~i~sv~~ 154 (156)
++.|+.+||+.|++.+..|++. ++.|-.+|++++++.+. ..|..++|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCE
Confidence 5678999999999999888552 48888999988776443 346667765
No 169
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.03 E-value=0.00092 Score=53.81 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=55.0
Q ss_pred cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
..+.+|.+.++|-+.+... ..+..|||.||-+-++.|..+...|..||.+|+. +.|++|.....+ +..+|.+..+|+
T Consensus 125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 4567887767777776421 2355799999999999999999999999999995 999999987765 566777766664
No 170
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.01 E-value=0.0015 Score=44.75 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=31.5
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH---H----HHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---D----LVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l----~~~~~i~sv~~ 154 (156)
++.|..+|||.|++.+..|.+.. +.+-.+|+++.++ + .+..|..++|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCe
Confidence 55699999999999999887652 4455666665432 2 22235667664
No 171
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.01 E-value=0.0034 Score=39.95 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=34.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCc-ccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNI-SVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~-sv~~ 154 (156)
++.|+.+||+.|.+.+..|++. ++.+-.+|++.+++..++ .|.. ++|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~ 54 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQ 54 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCE
Confidence 4678999999999999888763 367778888876655443 4554 6653
No 172
>PHA03050 glutaredoxin; Provisional
Probab=96.99 E-value=0.002 Score=44.97 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=33.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC---CH----HHHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VS----KDLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~---~~----~l~~~~~i~sv~~ 154 (156)
++.|..+|||.|++.+..|++..-+++ .+-.+|+++ .. ++.+.-|..+||+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCE
Confidence 566999999999999999988744332 344455543 32 2334446667664
No 173
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.95 E-value=0.0033 Score=54.73 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=50.9
Q ss_pred CCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 97 ~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
+++ -+--|.++.||.|......+++++...+ +|.+-.+|..++++++.+|++.+||.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~ 172 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPT 172 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCE
Confidence 444 4778999999999999999999998766 69999999999999999999999985
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.78 E-value=0.0051 Score=39.25 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=34.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~----l~~~~~i~sv~~ 154 (156)
++.|+.+||+.|++....|++. ++.+-.+|+++.++ +.+..+..++|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence 4568999999999999888863 36777888887664 444445555554
No 175
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.73 E-value=0.0031 Score=46.52 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=36.6
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
++++.|+.|+...||+|+.+.+.+.++.+++++++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 478999999999999999999999999998877777766554
No 176
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.73 E-value=0.0084 Score=43.38 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=38.9
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh--cCCeEEEEEECCCCH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVS 141 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~--~~~v~~~~vd~d~~~ 141 (156)
+.+++|+.|+..-||+|+++.+.+.++.+++ ++++.|+..++-...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 4788999999999999999999999999998 667999999885433
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.72 E-value=0.0057 Score=38.86 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~---l~~~~~i~sv~~ 154 (156)
++.|..+||+.|.+.+..|++. ++.+..+|++++.+ +....|..++|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCe
Confidence 5679999999999998888752 36677778876542 223347777775
No 178
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.69 E-value=0.0094 Score=40.63 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=37.1
Q ss_pred hHHHHHHHhhcCCCcEEEEEe----CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HhCCccce
Q 031630 85 HLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV----KRGNISVS 153 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~----A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~----~~~i~sv~ 153 (156)
.+++++ + ..+|+|.-. ++|||.|++....|.+. ++.+..+|+++++++.. ..|..++|
T Consensus 4 ~v~~~i----~-~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP 69 (97)
T TIGR00365 4 RIKEQI----K-ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIP 69 (97)
T ss_pred HHHHHh----c-cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 455566 2 345555433 38999999999888774 36677889877665433 23444554
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.68 E-value=0.0042 Score=40.81 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=43.1
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
|+.|+.+.|+-|......++++....+ +.+-.||+++++++..+|+. .||+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCE
Confidence 678999999999999999999766544 89999999999999999995 5554
No 180
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0061 Score=54.52 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=49.2
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHhC
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRG 148 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~~~l~~~~~ 148 (156)
.+.|.+.- ..+|||++.+..+||-.|..|...= .++|+.++.+++-++||-++-|++-+-|.
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym 97 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYM 97 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHH
Confidence 44565554 6799999999999999999997553 56677777679999999999888766553
No 181
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.013 Score=43.76 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=50.1
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCC----------------CHHHHHHhCCccceec
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNK----------------VSKDLVKRGNISVSIQ 155 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~----------------~~~l~~~~~i~sv~~~ 155 (156)
.+++..++.|-.+-|.-|-+++..+ +++.+.+.+++.++.+|+.. ..+++++|+++|-|..
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 5799999999999999999998776 45555566668888888743 2489999999998875
Q ss_pred C
Q 031630 156 I 156 (156)
Q Consensus 156 ~ 156 (156)
+
T Consensus 120 v 120 (182)
T COG2143 120 V 120 (182)
T ss_pred E
Confidence 3
No 182
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.31 E-value=0.0062 Score=46.86 Aligned_cols=43 Identities=12% Similarity=0.402 Sum_probs=36.3
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d 138 (156)
.+++.||.|+.--||+|+.+.|.+ +.+.+.+++++.++.+.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 367889999999999999999976 8888888877777777653
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=96.30 E-value=0.014 Score=38.20 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=34.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHhCCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----LVKRGNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l----~~~~~i~sv~~ 154 (156)
++.|..+||+.|++..-.|++. ++.+..+|++++++. .+..|..++|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence 5568899999999999888864 356667788766543 33446666664
No 184
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.30 E-value=0.032 Score=41.08 Aligned_cols=72 Identities=19% Similarity=0.359 Sum_probs=59.2
Q ss_pred eEecCChhhHHHHHHHhhcCCCc-EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc--cce
Q 031630 77 LEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI--SVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~-vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~--sv~ 153 (156)
+.+++ .+++..+. ..+++ +++.|...-......+...++++++++.+++.|+.+|++..++++..+|+. .+|
T Consensus 79 v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 79 VPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLP 153 (184)
T ss_dssp CEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSS
T ss_pred ccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCC
Confidence 34554 55888888 45655 777777777888899999999999999988999999999999999999997 444
No 185
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.012 Score=38.72 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=34.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHh-CCcccee
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----KDLVKR-GNISVSI 154 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~-----~l~~~~-~i~sv~~ 154 (156)
++.|.-+|||.|++.+..|.+. ++.+..+|+++.+ +.+++- |.++||+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCE
Confidence 5668999999999999888832 4677777776544 334444 6778775
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.27 E-value=0.014 Score=39.04 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=33.7
Q ss_pred CCcEEEEEeC----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031630 97 SQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISVSI 154 (156)
Q Consensus 97 ~k~vlV~F~A----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~----~~i~sv~~ 154 (156)
+.+|+|.-.. +||+.|++.+..|++.. +.+..+|+++++++.+. .|..++|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~ 66 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQ 66 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCE
Confidence 4555553322 79999999999887752 56777787766654332 35556553
No 187
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.26 E-value=0.01 Score=38.60 Aligned_cols=37 Identities=24% Similarity=0.565 Sum_probs=30.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
++.|+.+.||+|..+.+.++++.....+++.+....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4679999999999999999999866666677766655
No 188
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.11 E-value=0.023 Score=49.46 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
+..-+--|.++-||.|......+.+++...+ +|..-.+|...+++++.+|++.+||.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~ 173 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPA 173 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCE
Confidence 3445778999999999999999999998876 58888899999999999999999985
No 189
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=95.67 E-value=0.092 Score=34.79 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=47.7
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
..|.+.+++++++ ..+++++|-|+.+++. .+...|.++|..+.+.+.|+.++ +++++.++++.
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~ 64 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK 64 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC
Confidence 3567777888877 4689999999999998 57788999999987667887665 45566555543
No 190
>PRK10824 glutaredoxin-4; Provisional
Probab=95.38 E-value=0.061 Score=38.02 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeC-----CCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031630 84 DHLDQILLRAQELSQPILIDWMA-----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL 144 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A-----~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~ 144 (156)
+..++++. ..+|+| |.. ||||.|++....|.++. +.+..+|+++++++.
T Consensus 6 ~~v~~~I~-----~~~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~ 59 (115)
T PRK10824 6 EKIQRQIA-----ENPILL-YMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIR 59 (115)
T ss_pred HHHHHHHh-----cCCEEE-EECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHH
Confidence 34556662 455554 444 59999999999888763 445556776665543
No 191
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.16 E-value=0.046 Score=46.59 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=29.4
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHH
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (156)
|+.|..+|||+|++.+..|.+. ++.+-.+|+++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~ 39 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVK 39 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChh
Confidence 5679999999999999888774 37788888887663
No 192
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.99 E-value=0.23 Score=34.47 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=51.9
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHhCCc
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNI 150 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l~~~~~i~ 150 (156)
..|.+..+|.+++. ....|+|.|..+-= .--.....+.++|+...+.-.++.|||.+ ...+|.++.+.
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence 45777889999994 56778887776543 33344557888888888767899999976 77899999887
No 193
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.97 E-value=0.028 Score=44.48 Aligned_cols=45 Identities=13% Similarity=0.359 Sum_probs=39.4
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
..++|+|++|.+--|||=..-.+.|++++++|.+.+.|+-|-+.+
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 579999999999999999999999999999998766677776643
No 194
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.82 E-value=0.064 Score=40.74 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHH
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEK 121 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~ 121 (156)
+++..++.|+.+.||+|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 47899999999999999999999987
No 195
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.80 E-value=0.33 Score=34.79 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=53.8
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCC--CCh-hH-HhhhHHHHHHHHHhcCC-eEEEEEECCCCHHHHHHhCCc
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCR-KC-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~--WC~-~C-k~~~p~l~~la~~~~~~-v~~~~vd~d~~~~l~~~~~i~ 150 (156)
+++++++.+.+++.- .+++..+|-|.-. -|. .+ ......+.++|+.|.++ +.|+.+|.++...+++.||+.
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 567888777776665 2356666766432 122 23 35578899999999988 999999999999999999986
Q ss_pred c
Q 031630 151 S 151 (156)
Q Consensus 151 s 151 (156)
.
T Consensus 79 ~ 79 (130)
T cd02983 79 G 79 (130)
T ss_pred c
Confidence 4
No 196
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.19 Score=34.90 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=33.1
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031630 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (156)
..++++. ..+ +|.|.-+||+.|++++..|.+ ++.+..++.+|-+.+.
T Consensus 6 ~v~~~i~-----~~~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g 52 (104)
T KOG1752|consen 6 KVRKMIS-----ENP-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDG 52 (104)
T ss_pred HHHHHhh-----cCC-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCc
Confidence 4556662 344 345999999999998888877 4445678888876543
No 197
>PTZ00062 glutaredoxin; Provisional
Probab=94.31 E-value=0.16 Score=39.36 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=33.2
Q ss_pred hhHHHHHHHhhcCCCcEEEEEe----CCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031630 84 DHLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL 144 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~----A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~ 144 (156)
+-+++++ + ..+|+|.-- +||||.|++....|.+. ++.+..+|+++.+++.
T Consensus 104 ~~v~~li----~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~ 157 (204)
T PTZ00062 104 EKIERLI----R-NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLR 157 (204)
T ss_pred HHHHHHH----h-cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHH
Confidence 3455555 2 455544332 37999999998888864 3677788887766543
No 198
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=94.02 E-value=0.39 Score=33.37 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=48.5
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHH---hcCCeEEEEEECCCCHHHHHHhCCcc
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNIS 151 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~---~~~~v~~~~vd~d~~~~l~~~~~i~s 151 (156)
.++...+. ..+.+..+.|+ -=..=..+.+.+.+++++ +.+++.|+.+|.++....++-+|+..
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~ 71 (111)
T cd03072 6 FENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTP 71 (111)
T ss_pred cccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCH
Confidence 34555666 45667666677 222346788999999999 98889999999999888899999886
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.92 E-value=0.29 Score=43.10 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=54.7
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceec
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~ 155 (156)
.+++++.+.. -.+...|+.|+.+-|..|..+...++++++ +.+++.+...|..++.+++++|++..+|..
T Consensus 354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTV 423 (555)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEE
Confidence 3456666653 234446778888899999999999999985 556788988999889999999999877653
No 200
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.29 Score=40.32 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=61.6
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeC----CCChhHHhhhHHHHHHHHHhc------C--CeEEEEEECCCCHHH
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFD------T--KLKFYYVDVNKVSKD 143 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A----~WC~~Ck~~~p~l~~la~~~~------~--~v~~~~vd~d~~~~l 143 (156)
.+..++ .+.|.+++. +.-.+-.++|.|.| .-|.-|+.+...+.-++..+. + ++-|..||.++.+++
T Consensus 41 ~VI~~n-~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 41 GVIRMN-DDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CeEEec-Ccchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 466666 458888886 22345668888987 469999999999999987652 2 589999999999999
Q ss_pred HHHhCCcccee
Q 031630 144 LVKRGNISVSI 154 (156)
Q Consensus 144 ~~~~~i~sv~~ 154 (156)
.+.++..++|.
T Consensus 119 Fq~l~ln~~P~ 129 (331)
T KOG2603|consen 119 FQQLNLNNVPH 129 (331)
T ss_pred HHHhcccCCCe
Confidence 99999998875
No 201
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.54 E-value=0.35 Score=37.60 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=51.5
Q ss_pred cceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
.++.+|+..+...++... ..|-+|+|..|...-+.|+-+...|+.++.+|+. +.|+++-.+.
T Consensus 91 G~V~~ISg~dyv~EVT~A--s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~ 152 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKA--SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATT 152 (240)
T ss_pred cceeeccchHHHHHHHhc--cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccc
Confidence 457778877666666654 5689999999999999999999999999999995 8898886543
No 202
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=93.03 E-value=0.44 Score=33.21 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=36.4
Q ss_pred hhHHhhhHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHhCCcc
Q 031630 110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS 151 (156)
Q Consensus 110 ~~Ck~~~p~l~~la~~~~-~~v~~~~vd~d~~~~l~~~~~i~s 151 (156)
..=..+...+.++|+.++ +++.|+.+|.++....++.+|+..
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~ 73 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDF 73 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCc
Confidence 444678899999999999 699999999999888888899874
No 203
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.91 E-value=0.26 Score=38.78 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=30.9
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
.+++.+++.|+-+-||.|+++++.++++.+. ++.+..+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~ 144 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAF 144 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEec
Confidence 3578899999999999999999999887541 355555433
No 204
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.26 E-value=0.27 Score=34.85 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCChhHHhhhHHHHHHHHHhc
Q 031630 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (156)
Q Consensus 98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~ 127 (156)
|.++|.|.-|.|+-|......+.++..+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999988887764
No 205
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=91.69 E-value=0.77 Score=34.35 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=38.4
Q ss_pred CCCcEEEEEeCCCC-hhHHhhhHHHHHHHHHhc---CCeEEEEEECCC---CHHHHHHh
Q 031630 96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK---VSKDLVKR 147 (156)
Q Consensus 96 ~~k~vlV~F~A~WC-~~Ck~~~p~l~~la~~~~---~~v~~~~vd~d~---~~~l~~~~ 147 (156)
.||++||.|.-+-| ..|-.....+.++.+.++ .++.++.|.+|. .++.+++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 69999999999999 579988888877776654 257777777763 56666665
No 206
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.60 E-value=0.23 Score=33.87 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=24.2
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
..|+.++|+.|++....|++. ++.+-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence 468899999999998777763 35666677654
No 207
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.53 E-value=0.46 Score=37.81 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd 136 (156)
+++.+|+.|+-+-||.|+++.+.+.++.+. ++|.+..+-
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip 154 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHIL 154 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEe
Confidence 567889999999999999999998887653 235555554
No 208
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.21 E-value=1 Score=31.34 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=26.0
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (156)
..|+.++|+.|++....|++- ++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 357899999999998887762 3677778876644
No 209
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.20 E-value=1.1 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEEeCC------CChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHH
Q 031630 101 LIDWMAS------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL 144 (156)
Q Consensus 101 lV~F~A~------WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~ 144 (156)
+|.|+++ +|+.|++.+..|+++ +|.+-.+|++.+++..
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~ 45 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFR 45 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHH
Confidence 3456777 999999999888764 3778889997765443
No 210
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.98 E-value=0.96 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=25.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (156)
+..|+.+||+.|++....|++- ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999988766553 3667777776543
No 211
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.06 E-value=0.83 Score=31.63 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=24.8
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence 458899999999998777763 366777777543
No 212
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.84 Score=35.14 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=50.4
Q ss_pred chhccccCCCCCCCc-cc--eEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhhhHHHHHHHHHhcC-CeEEEE
Q 031630 60 VRVEALWPDLSRPTS-VE--LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYY 134 (156)
Q Consensus 60 ~~~~~~~~~~~~p~~-~~--~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~ 134 (156)
.+++..+|+|..++. .+ ..+|+..+. .+|++++.|| ++.-+-|=-+...|.+.++++.. ++.+++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~----------~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDY----------YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhh----------cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEE
Confidence 355677777776654 11 234543322 2688888888 78888888899999998888864 699999
Q ss_pred EECCC
Q 031630 135 VDVNK 139 (156)
Q Consensus 135 vd~d~ 139 (156)
+.+|.
T Consensus 73 vS~Ds 77 (194)
T COG0450 73 VSTDS 77 (194)
T ss_pred EecCc
Confidence 99986
No 213
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.76 E-value=0.77 Score=31.64 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=24.0
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
..|+.+||+.|++....|++- ++.+-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEeccc
Confidence 468899999999988777663 35666677654
No 214
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=86.92 E-value=1.5 Score=32.83 Aligned_cols=34 Identities=26% Similarity=0.652 Sum_probs=26.0
Q ss_pred EEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031630 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (156)
Q Consensus 103 ~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd 136 (156)
.|.-|+|+.|-...|.+.++..+++..+.+-.|=
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 4889999999999999999999998766555443
No 215
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=85.07 E-value=1.4 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=49.5
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCC---ChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccce
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASW---CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVS 153 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~W---C~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~ 153 (156)
...++ .++++.++. .+...++ |++.- ++.+....=++-++.+.+++.+..+.++-....++..+||+.+.|
T Consensus 11 ~~~vd-~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp EEEE--CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred Ceeec-hhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence 33444 557888885 3444444 55544 455666667888998899887888888877789999999998776
Q ss_pred e
Q 031630 154 I 154 (156)
Q Consensus 154 ~ 154 (156)
.
T Consensus 85 a 85 (107)
T PF07449_consen 85 A 85 (107)
T ss_dssp E
T ss_pred e
Confidence 4
No 216
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=84.58 E-value=3.3 Score=31.99 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhc----CC--eEEEEEECC-CCHHHHHHhCC
Q 031630 96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD----TK--LKFYYVDVN-KVSKDLVKRGN 149 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~----~~--v~~~~vd~d-~~~~l~~~~~i 149 (156)
.|++++|.|.=+.|| -|-.+...+..+.++.. .+ +.++.||-+ +.++.+++|+.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 599999999988886 69998888888877765 23 455555543 46888888865
No 217
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.63 E-value=2.5 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=23.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
+..|+.++|+.|++....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence 4568899999999988666653 35566666654
No 218
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=82.52 E-value=3.5 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 457889999999988887763 356666776543
No 219
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=82.43 E-value=2.7 Score=26.07 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=29.7
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHhCCccce
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISVS 153 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~i~sv~ 153 (156)
+.|+.+||+.|.+..-.+++..- .+.++.+|... .++..+....-.||
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP 50 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVP 50 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCC
Confidence 34789999999998777766432 25566666543 34554444444444
No 220
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=80.67 E-value=18 Score=25.91 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=47.0
Q ss_pred eEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHH-HHhc--CCeEEEEEECC-----CCHHHHHHhC
Q 031630 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEFD--TKLKFYYVDVN-----KVSKDLVKRG 148 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la-~~~~--~~v~~~~vd~d-----~~~~l~~~~~ 148 (156)
.+.+.+ -+|++++. ..+.+||.|=... |=-.-+-.|.+++ +... +++-++.|-+. +|.+++++|+
T Consensus 6 ~v~LD~-~tFdKvi~----kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~ 78 (126)
T PF07912_consen 6 CVPLDE-LTFDKVIP----KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYK 78 (126)
T ss_dssp SEEEST-THHHHHGG----GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT
T ss_pred eeeccc-eehhheec----cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhC
Confidence 345554 48999994 5899999996554 4455567778888 4432 36888888774 3899999999
Q ss_pred Ccc
Q 031630 149 NIS 151 (156)
Q Consensus 149 i~s 151 (156)
+..
T Consensus 79 i~k 81 (126)
T PF07912_consen 79 IDK 81 (126)
T ss_dssp -SC
T ss_pred CCc
Confidence 953
No 221
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=80.56 E-value=4.5 Score=29.66 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=35.3
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
-++.|+.|.||-|......++. .++.+-.+..++...+-+++||.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp 71 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIP 71 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCC
Confidence 4677899999999998887772 14777777788888888888885
No 222
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=80.55 E-value=3.1 Score=33.00 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=37.5
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc----CCeEEEEEECC
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVN 138 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~----~~v~~~~vd~d 138 (156)
..|+++||-+--.+|..|..-+..|+.|..++. .+|.|+.||--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 469999999999999999999999988886663 26999999964
No 223
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.18 E-value=5 Score=26.39 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
.+| +.|+|.-||.|......++++- +.+-.|++...
T Consensus 2 skp--~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~S 37 (85)
T COG4545 2 SKP--KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITES 37 (85)
T ss_pred CCc--eeeccccCcchHHHHHHHHHcC------CCceeeehhhh
Confidence 356 5699999999998887777763 33444565543
No 224
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.16 E-value=4.8 Score=29.75 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.8
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~ 128 (156)
|..|+-+.||.|-...+.++++.++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 225
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=74.76 E-value=4 Score=32.65 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=28.6
Q ss_pred cCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC
Q 031630 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (156)
Q Consensus 95 ~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~ 128 (156)
..||+.++...+.|||-|....=.|-.+..+|+.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 5799999999999999999998666666667764
No 226
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=74.48 E-value=0.48 Score=38.97 Aligned_cols=59 Identities=15% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE-CCCCHHHHHHhCCccceec
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD-VNKVSKDLVKRGNISVSIQ 155 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd-~d~~~~l~~~~~i~sv~~~ 155 (156)
...++-+.||++|||.-+...|.+.-...-+.. +....++ .-..+.++.++|+.+.+..
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~ 134 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSN 134 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcc
Confidence 356788999999999999999999888777763 4444443 2346778888888876643
No 227
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=74.30 E-value=16 Score=30.80 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=44.1
Q ss_pred ceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-------HHHHHHHhcC-CeEEEEEECCCCHHHHHHh
Q 031630 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-------LEKLAAEFDT-KLKFYYVDVNKVSKDLVKR 147 (156)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-------l~~la~~~~~-~v~~~~vd~d~~~~l~~~~ 147 (156)
.+..++ ..+|+++++ +-+.++|.|+.+= +.-+..... ++-.|+-+.+ ++.|+-||..++..+++++
T Consensus 35 RVi~Ln-eKNfk~~lK----kyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 35 RVIDLN-EKNFKRALK----KYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp -CEEE--TTTHHHHHH----H-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred ceEEcc-hhHHHHHHH----hhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 356665 559999995 4677888888876 333433322 2333444433 5999999999999999999
Q ss_pred CCcc
Q 031630 148 GNIS 151 (156)
Q Consensus 148 ~i~s 151 (156)
|+..
T Consensus 109 gv~E 112 (383)
T PF01216_consen 109 GVEE 112 (383)
T ss_dssp T--S
T ss_pred Cccc
Confidence 9874
No 228
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=74.08 E-value=16 Score=25.33 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~ 139 (156)
.||++||-=.|+-|+--. --..|++|.++|.+ ++.++.+=|++
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 699999999999999888 67799999999974 69999998876
No 229
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=7.9 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~ 128 (156)
++.+++.|.-.-||+|+...|.+++.....+.
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 48899999999999999999999886666554
No 230
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=72.06 E-value=7.8 Score=27.76 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=23.6
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
+..|+.++|+.|++....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCC
Confidence 3457889999999977666542 36677777754
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=71.36 E-value=25 Score=22.73 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.6
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHHHh-cCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 100 vlV~F~A~WC~~Ck~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
.+..|-|.--+..+.....+.++-+++ ++.+.+--||+.++|++|+.++|...|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPt 58 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPT 58 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEech
Confidence 344555666677777777787776666 4468999999999999999999987764
No 232
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=68.37 E-value=8.9 Score=26.07 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=29.4
Q ss_pred EeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 104 F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
||-.+|+-|......+.+... .+.+.|+.+.-....++.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcC
Confidence 688999999999999988722 234666555333444445555554
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=66.65 E-value=37 Score=23.53 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=48.3
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHh-cCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
.+..++=.|.|.--+.-+.....+.++-+++ .+.+.+=-||+.++|++|+.++|...|+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPT 63 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPT 63 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecH
Confidence 4566777888988888888888888886655 4458888899999999999999987765
No 234
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=66.00 E-value=38 Score=22.76 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=42.5
Q ss_pred EecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCC
Q 031630 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN 149 (156)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i 149 (156)
..|.+.+++++++ ..++.++|-|+.+-=. .+...|.++|..+.+.+.|+... ..+++.++++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~ 64 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY 64 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC
Confidence 4567788888888 4577888888766433 46788888998886667775433 2355555655
No 235
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=64.76 E-value=42 Score=22.86 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=43.2
Q ss_pred eEecCChhhHHHHHHHhhcCC-CcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 77 LEPINDSDHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~-k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
+..|.+.++++.++. .. +.++|-|+.+-=. .+...|.++|..+.+.+.|+... ..+++.++++.
T Consensus 2 v~~i~s~~ele~f~~----~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~ 66 (107)
T cd03068 2 SKQLQTLKQVQEFLR----DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS 66 (107)
T ss_pred ceEcCCHHHHHHHHh----cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC
Confidence 356778888999884 34 7777777766433 46677889999986667774433 33555666554
No 236
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=64.55 E-value=7.7 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=21.5
Q ss_pred EEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031630 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 103 ~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d 138 (156)
.|+.++|+.|.+..-.++...- .+....++.+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~ 34 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLG 34 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCC
Confidence 4778999999988887776532 2344455543
No 237
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=64.23 E-value=55 Score=25.84 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=43.0
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCC-h-hHHhhhHHHHHHHHHh----cCCeEEEEEECCCCHHHHHH----hCCcccee
Q 031630 85 HLDQILLRAQELSQPILIDWMASWC-R-KCIYLKPKLEKLAAEF----DTKLKFYYVDVNKVSKDLVK----RGNISVSI 154 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~F~A~WC-~-~Ck~~~p~l~~la~~~----~~~v~~~~vd~d~~~~l~~~----~~i~sv~~ 154 (156)
.=.++++ +-+++|-|.+|.+-= + .=....+.++++.++| ++++.+-.+|.+.+++.+++ +|+..+.+
T Consensus 15 ~T~~~L~---~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 15 QTKKVLK---SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred HHHHHHH---hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 3445554 346788888876651 1 1244445555555555 33799999999877777666 89887665
Q ss_pred c
Q 031630 155 Q 155 (156)
Q Consensus 155 ~ 155 (156)
+
T Consensus 92 ~ 92 (271)
T PF09822_consen 92 E 92 (271)
T ss_pred e
Confidence 4
No 238
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.31 E-value=22 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=30.8
Q ss_pred EEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 100 vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
.|..|+..-||.|....+.+.++.+.+++ ++.+.-+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 36778999999999999999999999943 4555555543
No 239
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=60.71 E-value=47 Score=22.10 Aligned_cols=63 Identities=27% Similarity=0.208 Sum_probs=42.0
Q ss_pred eEecCChhhHHHHHHHhhc-CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCC
Q 031630 77 LEPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN 149 (156)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~-~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i 149 (156)
+..|.+.++++.++ . .+..++|-|+.+-=. .+...|.++|..+.+...|+... +++++.++++
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~ 65 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGL 65 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCC
Confidence 35677888899998 4 577888878776444 46677888998886557764332 3344455544
No 240
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=60.24 E-value=17 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=21.6
Q ss_pred EEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 103 ~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
.|+.++|+.|++..-.+.+..-. +....+|.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID----VPLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC----ceEEEeec
Confidence 47788999999999888775322 34445554
No 241
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=60.02 E-value=12 Score=22.87 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=15.7
Q ss_pred EEeCCCChhHHhhhHHHHHH
Q 031630 103 DWMASWCRKCIYLKPKLEKL 122 (156)
Q Consensus 103 ~F~A~WC~~Ck~~~p~l~~l 122 (156)
.++.++|+.|++..-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 46788999999887776654
No 242
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=59.86 E-value=50 Score=22.13 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=45.4
Q ss_pred CcEEEEEeCCCChhHHhhhHHHHHHHHHh-cCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 98 k~vlV~F~A~WC~~Ck~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
..++=.|.|.--+..+.....+.++-+++ .+.+.+=-||+.++|++|+.++|...|+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPt 60 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPT 60 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecH
Confidence 44566677888888888888888876655 4458888899999999999999987764
No 243
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=57.84 E-value=32 Score=21.52 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=16.2
Q ss_pred EEEeCCCChhHHhhhHHHHHH
Q 031630 102 IDWMASWCRKCIYLKPKLEKL 122 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~l 122 (156)
..++.++|+.|++.+-.+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 456778999999887776664
No 244
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=57.57 E-value=34 Score=23.72 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
.+.++.++.++...+-++++.=+.+. .+.+.+..+.+-....-.. .++.-+|.+-++|+|++||..|
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g-----~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V 76 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG-----SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFV 76 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC-----CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEE
Confidence 34677777776555444443323333 5555554444333211011 4445579999999999999754
No 245
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=56.99 E-value=47 Score=23.44 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC--CeEEEEEECCCCHHHHH
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLV 145 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~--~v~~~~vd~d~~~~l~~ 145 (156)
+...++-|--.--+.-.++.+.++++|+++.. ++.|+.||-|+.|-+..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~ 70 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVP 70 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhH
Confidence 45567788888889999999999999999864 69999999999886653
No 246
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=56.32 E-value=15 Score=22.36 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=21.7
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d 138 (156)
..|+.++|+.|++..-.+++..-. +....+|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~ 34 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPD 34 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCC
Confidence 357789999999998777654322 344445544
No 247
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=25 Score=26.27 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~ 139 (156)
.||++||-=.|+-|+--- --.-|+.|.++|.+ ++.++.+-|++
T Consensus 24 ~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 24 KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccc
Confidence 699999999999998644 23446777888876 59999998875
No 248
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=54.05 E-value=51 Score=27.72 Aligned_cols=58 Identities=16% Similarity=0.359 Sum_probs=41.7
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCC----CChh-------------HHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMAS----WCRK-------------CIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~----WC~~-------------Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
+.+.+....++..|...+.|++|.+.-. .++. ++.+.+.+..+++.+. |. +.+..|..
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~--VP-ValHLDHg 97 (345)
T cd00946 23 CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYG--VP-VVLHTDHC 97 (345)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCC--CC-EEEECCCC
Confidence 4567788999988888899999998643 3443 4578888888888874 44 44666543
No 249
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.59 E-value=20 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.7
Q ss_pred EEEeCCCChhHHhhhHHHHHH
Q 031630 102 IDWMASWCRKCIYLKPKLEKL 122 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~l 122 (156)
..|+.+.|+.|++.+-.+.+.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHC
Confidence 457889999999998766654
No 250
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=52.14 E-value=21 Score=23.59 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=38.8
Q ss_pred EeCCCChhHHhhhHHHHHHHHHh-cCCeEEEEEECCCCHHHHHHhCCcccee
Q 031630 104 WMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISVSI 154 (156)
Q Consensus 104 F~A~WC~~Ck~~~p~l~~la~~~-~~~v~~~~vd~d~~~~l~~~~~i~sv~~ 154 (156)
|-|.--+...+....+..+.+.+ ++.+.+--||+.++|++|+.++|...|+
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPt 54 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPT 54 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecce
Confidence 33444456677778888887765 4469999999999999999999876553
No 251
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=51.89 E-value=25 Score=21.48 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=21.5
Q ss_pred EEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEEC
Q 031630 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (156)
Q Consensus 103 ~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~ 137 (156)
.|+.++|+.|++..-.+++..- .+....+|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGL----ELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCC----CCEEEEecC
Confidence 5788999999988777766532 244555664
No 252
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=50.23 E-value=9.8 Score=34.09 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCChhHHhhhHH-H--HHHHHHhcCCeEEEEEECCCCHHHH
Q 031630 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDL 144 (156)
Q Consensus 87 ~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~l~ 144 (156)
++....|+.++||+++.+.-+-|-.|..|... | ++.++.+.++++-++||-++-|++=
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVD 162 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVD 162 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchH
Confidence 34444444789999999999999999988654 3 3456666556666777776666543
No 253
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=45.96 E-value=77 Score=25.20 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCccceEecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECC
Q 031630 72 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (156)
Q Consensus 72 p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d 138 (156)
|.-.-+.++.+..+|-+.+... .+.-.++|..|-+--+-|-++...+.-||.+|+ .+.|.++-..
T Consensus 135 p~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss 199 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSS 199 (273)
T ss_pred CccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeec
Confidence 3334567788888888888531 124467888999999999999999999999998 4899888654
No 254
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=58 Score=25.10 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=49.8
Q ss_pred cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe--CCCChhHHhhhHHHHHHHHHhcC-CeEEEEE
Q 031630 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM--ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYV 135 (156)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~--A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~v 135 (156)
.++.+..+|.|...+... .| .|.+.+ +..+.|.|. |+.-|-|-.+...+.+++-++.. ++.++..
T Consensus 5 ~l~lgd~~PNfea~Tt~g--~i----~fhd~~------gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlial 72 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADTTVG--KI----KFHDYL------GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIAL 72 (224)
T ss_pred cccccCcCCCcccccccc--ce----ehhhhc------ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEe
Confidence 355677777777665533 23 233333 555666776 78899999999999999888853 6999999
Q ss_pred ECCCC
Q 031630 136 DVNKV 140 (156)
Q Consensus 136 d~d~~ 140 (156)
.||+.
T Consensus 73 S~d~v 77 (224)
T KOG0854|consen 73 SVDDV 77 (224)
T ss_pred ehhhH
Confidence 99863
No 255
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=44.63 E-value=58 Score=26.45 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCh-hHHhhhHHHHHHHHHhcC--Ce----EEEEEECC-CCHHHHH
Q 031630 96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFDT--KL----KFYYVDVN-KVSKDLV 145 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~-~Ck~~~p~l~~la~~~~~--~v----~~~~vd~d-~~~~l~~ 145 (156)
.||++||.|.=+-|| -|=.+...+..+..+... ++ .|+.||-. +.++.+.
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~ 195 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVA 195 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHH
Confidence 599999999999998 477777777666555432 12 57777763 2344333
No 256
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=44.46 E-value=43 Score=27.98 Aligned_cols=25 Identities=4% Similarity=-0.068 Sum_probs=20.2
Q ss_pred ccCCCCCccccccCCceEEEeCCCc
Q 031630 28 WSSGSSSCLLLQKNSAFFWVDTASR 52 (156)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (156)
+++-|||++++.|..-...|.|++.
T Consensus 96 fgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 96 FGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred hccCCCceEEEecCCeeeecCCCcc
Confidence 6888999999999887777766643
No 257
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=44.27 E-value=32 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=23.2
Q ss_pred EEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
+..|+-+.|..|++....|++- ++.+-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3458899999999887666553 35666667643
No 258
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=43.46 E-value=1.6e+02 Score=23.91 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=47.6
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhH----HhhhHHHHHHHHHhcCCeEEEEEECCCC--HHH---HHHhCC
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKC----IYLKPKLEKLAAEFDTKLKFYYVDVNKV--SKD---LVKRGN 149 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~C----k~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l---~~~~~i 149 (156)
.+.+.+....++..|...+.|++|.+.- +...+ ..+.+.+..+++++.-.|+ +.+..|.. .+. +-+.|-
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~VP-V~lHLDHg~~~e~i~~ai~~Gf 101 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSE-GAARHMTGFKTVVAMVKALIEEMNITVP-VAIHLDHGSSFEKCKEAIDAGF 101 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCc-chhhhcCCHHHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHcCC
Confidence 3456778888898887889999999854 33333 3455667777776642232 34666543 233 346788
Q ss_pred cccee
Q 031630 150 ISVSI 154 (156)
Q Consensus 150 ~sv~~ 154 (156)
+||++
T Consensus 102 tSVM~ 106 (285)
T PRK07709 102 TSVMI 106 (285)
T ss_pred CEEEE
Confidence 89886
No 259
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.01 E-value=46 Score=26.26 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=24.9
Q ss_pred CcEEEEEeC-CCChhHHhhhHHHHHHHHHhcC
Q 031630 98 QPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT 128 (156)
Q Consensus 98 k~vlV~F~A-~WC~~Ck~~~p~l~~la~~~~~ 128 (156)
.++-|++|+ .=||.|-.-++.|+++...+++
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 445566555 5699999999999999999885
No 260
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=35.38 E-value=39 Score=22.47 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcCCCcEEEE------EeCCC---ChhH--HhhhHHH---HHHHHHhcCC-eEEEEEECC
Q 031630 85 HLDQILLRAQELSQPILID------WMASW---CRKC--IYLKPKL---EKLAAEFDTK-LKFYYVDVN 138 (156)
Q Consensus 85 ~~~~~l~~a~~~~k~vlV~------F~A~W---C~~C--k~~~p~l---~~la~~~~~~-v~~~~vd~d 138 (156)
+++.++ +.|-.+-+. ||.-| |..| +.....+ ++..++|++. |.++++|-.
T Consensus 7 QI~yll----~qG~~~~iE~~d~~rywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 7 QVRQLL----AQGYKIGLEHADARRFRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred HHHHHH----HCCCEeEEEECCCCccHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 444445 345555555 34545 6667 5555555 4556778764 889998865
No 261
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=34.99 E-value=75 Score=20.47 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=27.3
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHhCCccce
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISVS 153 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~-~~l~~~~~i~sv~ 153 (156)
..|+.+.|+.|++..-.++...- .+.++.+|.... +++........+|
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vP 68 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVP 68 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcC
Confidence 34678889999988766665422 245556665433 3344433333444
No 262
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=75 Score=24.02 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECCC
Q 031630 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (156)
Q Consensus 96 ~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d~ 139 (156)
.|+++||-=-|+-|+--..--..|..|.++|.+ ++.++..=|++
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 599999988999999988777789999999865 68888888865
No 263
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=32.92 E-value=1.1e+02 Score=18.80 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=29.3
Q ss_pred EeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHhCCcccee
Q 031630 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSKDLVKRGNISVSI 154 (156)
Q Consensus 104 F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~-~~~l~~~~~i~sv~~ 154 (156)
++.++|+.|++..=.++...- .+.+..++..+ .+++........||+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPv 49 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPV 49 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSE
T ss_pred CCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceE
Confidence 678999999998776665422 25566666544 355555555545543
No 264
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.81 E-value=68 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=22.9
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
..|+-+-|..|++....|++- ++.+..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 457899999999987666553 35666677644
No 265
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=32.77 E-value=33 Score=26.98 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=46.4
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
.|.....+.+.. ..+++++ -+.+.++.++.+...++++.+..+ ......++.++...+..+|||+
T Consensus 207 ~Ip~~~~v~~A~----~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~-~~~~~~~~~~~~~~~~~~~~~~ 271 (275)
T TIGR01287 207 FVPRSNIVQKAE----IRKMTVI--EYDPESEQANEYRELAKKIYENTE-FVIPTPLTMDELEEILMKFGIM 271 (275)
T ss_pred ECCCChHHHHHH----HcCCceE--EeCCCCHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHHh
Confidence 344344454444 5688865 357889999988888888877543 3566777888888999999986
No 266
>PRK08185 hypothetical protein; Provisional
Probab=32.00 E-value=2.7e+02 Score=22.67 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=48.2
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh-HHhhhHHHHHHHHHhcCCeEEEEEECCCC--HHH---HHHhCCccc
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDTKLKFYYVDVNKV--SKD---LVKRGNISV 152 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~-Ck~~~p~l~~la~~~~~~v~~~~vd~d~~--~~l---~~~~~i~sv 152 (156)
.+.+.+....++..|...+.|+++.+.-.-+.. ...+.+.+..+++++. |+ +.+..|.. .+. +-+.|.+||
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~--vP-V~lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP--VP-FVIHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC--CC-EEEECCCCCCHHHHHHHHHcCCCEE
Confidence 345677888888888888999999986533321 1346777788888764 44 44666542 222 345788888
Q ss_pred ee
Q 031630 153 SI 154 (156)
Q Consensus 153 ~~ 154 (156)
++
T Consensus 96 M~ 97 (283)
T PRK08185 96 MI 97 (283)
T ss_pred EE
Confidence 76
No 267
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=30.88 E-value=76 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=23.6
Q ss_pred EEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCC
Q 031630 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (156)
Q Consensus 102 V~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (156)
..|+-+-|..|++....+++. ++.+..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 357899999999988877763 35566677644
No 268
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=39 Score=25.81 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=38.5
Q ss_pred cchhccccCCCCCCCccceEecCChhhHHHHHHHhhcCCCcEEEEEe-CCCChhHHhh----hHHHHHHHHHhcCCeEEE
Q 031630 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYL----KPKLEKLAAEFDTKLKFY 133 (156)
Q Consensus 59 ~~~~~~~~~~~~~p~~~~~~~i~~~~~~~~~l~~a~~~~k~vlV~F~-A~WC~~Ck~~----~p~l~~la~~~~~~v~~~ 133 (156)
.+..+...|+++++.. +...|. ++++. .++++++.|| +.--|-|-+. .-.++++.+. ...++
T Consensus 62 ~v~~Gd~iPD~tL~de-dg~sis----Lkkit-----~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---~aeV~ 128 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE-DGKSIS----LKKIT-----GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---GAEVI 128 (211)
T ss_pred eeecCCcCCCcccccC-CCCeee----eeeec-----CCCcEEEEEeccCCCCCcccccccccccHHHHhhc---CceEE
Confidence 5667888899999875 223332 22332 4668888888 2223334333 3334444332 35677
Q ss_pred EEECCC
Q 031630 134 YVDVNK 139 (156)
Q Consensus 134 ~vd~d~ 139 (156)
++..|+
T Consensus 129 GlS~D~ 134 (211)
T KOG0855|consen 129 GLSGDD 134 (211)
T ss_pred eeccCc
Confidence 777765
No 269
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=30.36 E-value=2.1e+02 Score=20.63 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=34.9
Q ss_pred hHHHHHHHh----hcCCCcEEEEEeCCCChhHHhhhHHH---HHHHHHhcCCeEEEEEECCCC
Q 031630 85 HLDQILLRA----QELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 85 ~~~~~l~~a----~~~~k~vlV~F~A~WC~~Ck~~~p~l---~~la~~~~~~v~~~~vd~d~~ 140 (156)
.+.+.+..| +++.|+.+|....+--..+..+-... +.+.+-.++++.+..-|+.+.
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~ 67 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKE 67 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccch
Confidence 455666655 67899999999988764333332221 222333335688999998664
No 270
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=29.47 E-value=92 Score=22.77 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhc-----CCeEEEEEEC
Q 031630 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDV 137 (156)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~-----~~v~~~~vd~ 137 (156)
+.+.+.+++. ..+|-+|-..+ |...|+++...+.++.++.. ..+.++.||-
T Consensus 51 ~~~~l~~~i~----~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 51 DMERLKKFIE----KHKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHHHHHHHHH----HH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHHHHHHHHH----HcCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 3456777775 35676666655 89999999999999887764 2356555554
No 271
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=28.33 E-value=21 Score=26.19 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred CChhHHhhhHHHH
Q 031630 108 WCRKCIYLKPKLE 120 (156)
Q Consensus 108 WC~~Ck~~~p~l~ 120 (156)
-||+|++..|-+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999999873
No 272
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=28.32 E-value=21 Score=26.21 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=11.2
Q ss_pred CChhHHhhhHHHH
Q 031630 108 WCRKCIYLKPKLE 120 (156)
Q Consensus 108 WC~~Ck~~~p~l~ 120 (156)
-||+|++..|-+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999874
No 273
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=26.44 E-value=3.6e+02 Score=21.97 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=47.9
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCCCChh---HHhhhHHHHHHHHHhcCCeEEEEEECCCC--H--HHHHHhCCccc
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMASWCRK---CIYLKPKLEKLAAEFDTKLKFYYVDVNKV--S--KDLVKRGNISV 152 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~---Ck~~~p~l~~la~~~~~~v~~~~vd~d~~--~--~l~~~~~i~sv 152 (156)
+.+.+....++..|...+.|+++.+.-.-... =..+.+.+..+++++.-.|+ +.+..|.. . .-+-+.|.+||
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vP-V~lHLDH~~~~~i~~ai~~GftSV 103 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVP-VAIHLDHGHYEDALECIEVGYTSI 103 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCc-EEEECCCCCHHHHHHHHHcCCCEE
Confidence 45677888888888788999999987644333 24456777788887632232 33555543 1 22445788888
Q ss_pred ee
Q 031630 153 SI 154 (156)
Q Consensus 153 ~~ 154 (156)
++
T Consensus 104 m~ 105 (293)
T PRK07315 104 MF 105 (293)
T ss_pred EE
Confidence 76
No 274
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=26.38 E-value=1.7e+02 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCChhHHhhhHHHHHHHHHhcC-CeEEEEEECC
Q 031630 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (156)
Q Consensus 97 ~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~-~v~~~~vd~d 138 (156)
+.-+.+.++++.++-|.-+.-.++.+|+.|.+ +|.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45578889999999999999999999999987 6776666654
No 275
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=25.73 E-value=1.6e+02 Score=21.16 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=37.1
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCccceecC
Q 031630 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISVSIQI 156 (156)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~sv~~~~ 156 (156)
+.+++.+.++...|-++++.=+-.. .=+.....+.++..+-. + .++.-+|.+-++|+|++||..|
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~-~-----~~v~IdP~lF~~f~I~~VPa~V 76 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGG-K-----SGVQIDPQWFKQFDITAVPAFV 76 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCC-C-----CcEEEChHHHhhcCceEcCEEE
Confidence 4677777766666766665433333 12233333333333211 1 3334479999999999999754
No 276
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.19 E-value=96 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=17.9
Q ss_pred EEEEeCCCChhHHhhhHHHHHH
Q 031630 101 LIDWMASWCRKCIYLKPKLEKL 122 (156)
Q Consensus 101 lV~F~A~WC~~Ck~~~p~l~~l 122 (156)
+..|+.+-|..|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4558899999999998877764
No 277
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=25.12 E-value=36 Score=19.74 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=14.4
Q ss_pred CCCChhHHhhhHHHHHHHHHh
Q 031630 106 ASWCRKCIYLKPKLEKLAAEF 126 (156)
Q Consensus 106 A~WC~~Ck~~~p~l~~la~~~ 126 (156)
--+|.||+.=.+.+.++.++.
T Consensus 16 CGkC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 16 CGKCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp -S--HHHHCCCCHHHHHHHHH
T ss_pred CCCCCCcHhHHHHHHHHHHHH
Confidence 357999999888887776665
No 278
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.92 E-value=1.1e+02 Score=18.88 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=16.3
Q ss_pred cCCCcEEEEEeCCC-----------ChhHHhhhHH
Q 031630 95 ELSQPILIDWMASW-----------CRKCIYLKPK 118 (156)
Q Consensus 95 ~~~k~vlV~F~A~W-----------C~~Ck~~~p~ 118 (156)
-.|.+|+..-..-| ||.|+.+...
T Consensus 22 v~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 22 VMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYES 56 (58)
T ss_pred hcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHh
Confidence 36788777655544 9999987543
No 279
>PRK06801 hypothetical protein; Provisional
Probab=23.89 E-value=4e+02 Score=21.68 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=47.9
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCCCChhH--HhhhHHHHHHHHHhcCCeEEEEEECCC--CHHH---HHHhCCccc
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKC--IYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKD---LVKRGNISV 152 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~C--k~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l---~~~~~i~sv 152 (156)
+.+.+....++..|...+.|++|.+.-.-.... ..+.+.+..+++++. +. +.+..|. ..+. +-+.|.+||
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~--vp-V~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD--IP-VVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC--CC-EEEECCCCCCHHHHHHHHHhCCcEE
Confidence 456778888888887889999999976555332 345667777777764 33 4455553 3333 345788888
Q ss_pred ee
Q 031630 153 SI 154 (156)
Q Consensus 153 ~~ 154 (156)
++
T Consensus 102 m~ 103 (286)
T PRK06801 102 MF 103 (286)
T ss_pred EE
Confidence 76
No 280
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.09 E-value=82 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCeEEEEEECCCCHHHHHHhCCc
Q 031630 116 KPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (156)
Q Consensus 116 ~p~l~~la~~~~~~v~~~~vd~d~~~~l~~~~~i~ 150 (156)
...++++.+.+..+|.++-||+++..+..++...+
T Consensus 56 ~~Ri~~L~~~~~lrvLL~~VDv~~~~~~L~eL~k~ 90 (112)
T TIGR00597 56 HRRLQSLGKNFNLRILLVQVDVKNPQQALKELAKM 90 (112)
T ss_pred HHHHHHhccccceeEEEEEEeCCchHHHHHHHHHH
Confidence 34456666666657999999999988777665443
No 281
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.96 E-value=3.1e+02 Score=20.92 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCC--CChhH--H--------hhhHHHHHHHHHhcCCeEEEEEECCCCH
Q 031630 83 SDHLDQILLRAQELSQPILIDWMAS--WCRKC--I--------YLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~--WC~~C--k--------~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (156)
.+.++++|..+.+.|-.|+|+++.. ||..= . .+...+..+++.|.+.-.++..++-.+|
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP 131 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEP 131 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSG
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCc
Confidence 4578888888888999999999985 74211 1 1233466788888443345677774444
No 282
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.84 E-value=4.2e+02 Score=21.40 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=47.3
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChh--HHhhhHHHHHHHHHhcCCeEEEEEECCC--CHHH---HHHhCCcc
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRK--CIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKD---LVKRGNIS 151 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~--Ck~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l---~~~~~i~s 151 (156)
.+.+.+....++..|...+.|+++.+.-.-... -..+.+.+..++++.. ++ +.+..|. ..+. +-+.|.+|
T Consensus 24 n~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~--vp-v~lHlDH~~~~e~i~~Al~~G~ts 100 (281)
T PRK06806 24 SVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK--VP-VAVHFDHGMTFEKIKEALEIGFTS 100 (281)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC--CC-EEEECCCCCCHHHHHHHHHcCCCE
Confidence 345677888899888888999999986543322 3345567777777764 33 3355553 3332 44568888
Q ss_pred cee
Q 031630 152 VSI 154 (156)
Q Consensus 152 v~~ 154 (156)
|++
T Consensus 101 Vm~ 103 (281)
T PRK06806 101 VMF 103 (281)
T ss_pred EEE
Confidence 775
No 283
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.80 E-value=1.7e+02 Score=19.62 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=20.5
Q ss_pred EeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC
Q 031630 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (156)
Q Consensus 104 F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (156)
|+-+-|..|++....|++- ++.+-.+|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 5678899999998887762 366777888653
No 284
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.95 E-value=4.6e+02 Score=21.31 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=48.0
Q ss_pred ecCChhhHHHHHHHhhcCCCcEEEEEeCCCChhHH--hhhHHHHHHHHHhcCCeEEEEEECCC--CHHH---HHHhCCcc
Q 031630 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCI--YLKPKLEKLAAEFDTKLKFYYVDVNK--VSKD---LVKRGNIS 151 (156)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck--~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l---~~~~~i~s 151 (156)
.+.+.+....++..|...+.|+++.+.-.-...+- .+.+.+..+++++. ++ +.+..|. ..+. |-+.|-+|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~--VP-V~lHLDHg~~~e~i~~Ai~~GftS 100 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH--HP-LALHLDHHEKFDDIAQKVRSGVRS 100 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC--CC-EEEECCCCCCHHHHHHHHHcCCCE
Confidence 34567788899988888899999998653322222 35677788888764 43 3355553 3333 34578888
Q ss_pred cee
Q 031630 152 VSI 154 (156)
Q Consensus 152 v~~ 154 (156)
|++
T Consensus 101 VM~ 103 (284)
T PRK09195 101 VMI 103 (284)
T ss_pred EEe
Confidence 886
No 285
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.74 E-value=60 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=9.4
Q ss_pred CCChhHHhhhHHH
Q 031630 107 SWCRKCIYLKPKL 119 (156)
Q Consensus 107 ~WC~~Ck~~~p~l 119 (156)
+=||.||+..-.|
T Consensus 86 sPCG~CRQ~i~Ef 98 (134)
T COG0295 86 SPCGACRQVLAEF 98 (134)
T ss_pred CCcHHHHHHHHHh
Confidence 4599999876544
No 286
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=20.67 E-value=4.6e+02 Score=21.16 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=45.5
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCCCChh---HHhhhHHHHHHHHHhcCCeEEEEEECC--CCHH---HHHHhCCcc
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMASWCRK---CIYLKPKLEKLAAEFDTKLKFYYVDVN--KVSK---DLVKRGNIS 151 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~---Ck~~~p~l~~la~~~~~~v~~~~vd~d--~~~~---l~~~~~i~s 151 (156)
+.+.+..+.++..|...+.|+++.+.-.--.. =..+.+.+..+++++.. ++ +.+..| ...+ .+-+.|..|
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-vp-v~lhlDH~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSI-VP-VALHLDHGSSYESCIKAIKAGFSS 100 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCC-Ce-EEEECCCCCCHHHHHHHHHcCCCE
Confidence 45667888888887788999999876432222 23466677777877741 33 334444 2333 344568888
Q ss_pred cee
Q 031630 152 VSI 154 (156)
Q Consensus 152 v~~ 154 (156)
|++
T Consensus 101 Vmi 103 (282)
T TIGR01859 101 VMI 103 (282)
T ss_pred EEE
Confidence 765
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.65 E-value=3.8e+02 Score=23.27 Aligned_cols=50 Identities=26% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhHHhhhHHHHHHHHHhcCCeEEEEEE
Q 031630 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (156)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlV~F~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd 136 (156)
.+++++++.+ -.++|-+.++.+-|..|..+...++++++-- +++.+...+
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~ 56 (517)
T PRK15317 7 KTQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDS 56 (517)
T ss_pred HHHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEcc
Confidence 4566777753 4566666666668999999999999998754 456654433
No 288
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=20.41 E-value=2.9e+02 Score=24.34 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCCcEEEEE--eCCCChhHHhhhHHHHHHHHHhcCCeEEEEEECCCC---------HHHHHHhCCccceec
Q 031630 87 DQILLRAQELSQPILIDW--MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---------SKDLVKRGNISVSIQ 155 (156)
Q Consensus 87 ~~~l~~a~~~~k~vlV~F--~A~WC~~Ck~~~p~l~~la~~~~~~v~~~~vd~d~~---------~~l~~~~~i~sv~~~ 155 (156)
++++.+.+.-|||.+|.. .-|.-..|+.+...++ ++|+ +.++-+||.+- .+++-+|-|..+-|+
T Consensus 170 ervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~---ekY~--vpVlpvnc~~l~~~DI~~Il~~vLyEFPV~Ei~~~ 244 (492)
T PF09547_consen 170 ERVIEELKEIGKPFVILLNSTKPYSEETQELAEELE---EKYD--VPVLPVNCEQLREEDITRILEEVLYEFPVSEININ 244 (492)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHH---HHhC--CcEEEeehHHcCHHHHHHHHHHHHhcCCceEEEee
Confidence 344555556799966655 4577778887776554 4564 88999999751 344455666666554
No 289
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.30 E-value=4.7e+02 Score=21.16 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=45.9
Q ss_pred cCChhhHHHHHHHhhcCCCcEEEEEeCCCChhH--HhhhHHHHHHHHHhcCCeEEEEEECCC--CHHH---HHHhCCccc
Q 031630 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKC--IYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKD---LVKRGNISV 152 (156)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlV~F~A~WC~~C--k~~~p~l~~la~~~~~~v~~~~vd~d~--~~~l---~~~~~i~sv 152 (156)
+.+.+....++..|...+.|+++.+.-.-...+ ..+.+.+..+++.+. ++ +.+..|. ..+. +-+.|-+||
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~--VP-V~lHLDH~~~~~~i~~ai~~GftSV 96 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS--VP-VALHLDHGSSFELIKRAIRAGFSSV 96 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC--CC-EEEECCCCCCHHHHHHHHHhCCCEE
Confidence 445678888888887889999999864332222 246677777777764 32 3344443 3333 345788888
Q ss_pred ee
Q 031630 153 SI 154 (156)
Q Consensus 153 ~~ 154 (156)
++
T Consensus 97 Mi 98 (276)
T cd00947 97 MI 98 (276)
T ss_pred Ee
Confidence 86
No 290
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=20.16 E-value=41 Score=21.76 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=5.6
Q ss_pred cchhhhHHh
Q 031630 7 KSSILYQEL 15 (156)
Q Consensus 7 ~~~~l~~~~ 15 (156)
||||||--.
T Consensus 10 nPHFl~NtL 18 (82)
T PF06580_consen 10 NPHFLFNTL 18 (82)
T ss_pred ChHHHHHHH
Confidence 677776543
Done!