BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031631
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51204|YCF54_PORPU Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3
SV=1
Length = 108
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YYF +A+ F+L EE +E+ ER+ Y +KE DFWL+ PKFL+K I + P
Sbjct: 4 YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNLVP 62
Query: 144 --AVALVSTNGPWI 155
A+A++STN +I
Sbjct: 63 NEAIAIISTNSIFI 76
>sp|Q1XDT3|YCF54_PORYE Uncharacterized protein ycf54 OS=Porphyra yezoensis GN=ycf54 PE=3
SV=1
Length = 111
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YYF +A+ F+L +E +E+ ER+ Y +K DFWL+ P FL+K I+ + P
Sbjct: 4 YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 62
Query: 144 --AVALVSTNGPWI 155
AVA++STN +I
Sbjct: 63 KDAVAIISTNPIFI 76
>sp|P72777|YC54L_SYNY3 Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1780 PE=3 SV=1
Length = 133
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 84 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRP 143
YY+ +A+ KF+L+EE +E+L ER R+YGE++KE DFW VI+P FL+ + + P
Sbjct: 31 YYYALASQKFLLEEEPF-EEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 89
Query: 144 A--VALVSTNGPWIT 156
VA+VSTN +I
Sbjct: 90 EKNVAIVSTNKSFIV 104
>sp|O19890|YCF54_CYACA Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3
SV=1
Length = 103
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKR 139
+ N YY++ A+ F L +EE +E+L E+ ++ +K DFW+ K PN K
Sbjct: 4 DYNTYYYIAASKHF-LTQEEPLEEILREKTEHFIANNKSIDFWIFDSTKLNAHSPNEIKT 62
Query: 140 LRR----PAVALVSTNGPWIT 156
L++ P + ++S+N +IT
Sbjct: 63 LQKTFFFPTILIISSNKKFIT 83
>sp|A9GIM9|MUTS_SORC5 DNA mismatch repair protein MutS OS=Sorangium cellulosum (strain So
ce56) GN=mutS PE=3 SV=1
Length = 918
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 2 STSASLSVTAGMPISTQHGSAGRGRAIVLSLPSNHTLPQGLGLVSAHSNLKGRRGSFKTA 61
S +++ AG+P G R RAI+ +L S LP G H++L+GR +
Sbjct: 818 SYGVAVARLAGVP----EGVLARARAILATLESGAALPGG-----KHASLRGRT---RGG 865
Query: 62 VASVDSNQISSSSVPPEKEA 81
A +D + ++VPPE+ A
Sbjct: 866 AAQLDLFAPAQAAVPPEQSA 885
>sp|Q2GFL7|SUCC_EHRCR Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia
chaffeensis (strain Arkansas) GN=sucC PE=3 SV=1
Length = 387
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 56 GSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGER 115
G AV S D+NQI + P E + F+ +AK D+ ++ + LR+Y E
Sbjct: 182 GKIYKAVLSTDANQIE---INPLVETSSGEFIALDAKINFDDNALYRHPDIQELRDYDEE 238
Query: 116 SKEQ 119
KE+
Sbjct: 239 IKEE 242
>sp|Q7N9A4|RPOB_PHOLL DNA-directed RNA polymerase subunit beta OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rpoB PE=3
SV=1
Length = 1342
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 86 FVVANAKFMLDEEEHFQELLFERLRNYGERS 116
FV+A A +LD+E HF E L RNYGE S
Sbjct: 614 FVIAQANTVLDDEGHFVEDLI-TCRNYGESS 643
>sp|Q48252|CAGE_HELPY CAG pathogenicity island protein 23 OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=cagE PE=4 SV=2
Length = 983
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 83 KYYFVVANAKFMLDEEEHFQELLFER--LRNYGERSKEQ-----DFWLVIEPKFLD 131
K+YF K ++DE L+F +R Y E+ K + F+L IE LD
Sbjct: 222 KFYFHTVKKKIVIDETNRDYSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLD 277
>sp|A4XYJ7|RSMC_PSEMY Ribosomal RNA small subunit methyltransferase C OS=Pseudomonas
mendocina (strain ymp) GN=rsmC PE=3 SV=1
Length = 331
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 13 MPISTQHGSAGRGRAIVL----SLPSNHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSN 68
+P HG RG A++L SLP H L G G + LK R S + ++ VD+
Sbjct: 167 LPGVFAHGRLDRGSALLLEHLDSLPQGHLLDFGCGAGVIGAALKRRYPSSRVSLLDVDAF 226
Query: 69 QISSSSV 75
++SS +
Sbjct: 227 ALASSRL 233
>sp|P25355|CTR86_YEAST Copper transport protein 86 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CTR86 PE=1 SV=1
Length = 563
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 58 FKTAVASVD-SNQISSSSVPPEKE----ANKYYFVVANAKFMLDEEEHFQELLFERLRNY 112
FKT + + + SN+ + P+K+ ++ +F + AKF+ D+E F L E+ RNY
Sbjct: 192 FKTYLNNDEFSNEFFRDNDTPQKDYYCVRDRIFFDIVTAKFIQDQENSF---LIEKGRNY 248
Query: 113 GERSK 117
+ SK
Sbjct: 249 LDDSK 253
>sp|Q9ZLT4|CAGE_HELPJ CAG pathogenicity island protein 23 OS=Helicobacter pylori (strain
J99) GN=cagE PE=4 SV=1
Length = 983
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 83 KYYFVVANAKFMLDEEEHFQELLFER--LRNYGERSKEQ-----DFWLVIEPKFLD 131
K+YF K ++DE L+F +R Y E+ K + F+L IE LD
Sbjct: 222 KFYFHTVKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLD 277
>sp|A1VF28|RL9_DESVV 50S ribosomal protein L9 OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=rplI PE=3 SV=1
Length = 167
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 35 NHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKE 80
N+ LPQGLG++++ +NLK K A +D+ + +++ + + E
Sbjct: 28 NYLLPQGLGMLASQANLKAFELERKKLQARMDALRNAAADIAAKLE 73
>sp|Q72DH1|RL9_DESVH 50S ribosomal protein L9 OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplI PE=3
SV=1
Length = 167
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 35 NHTLPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKE 80
N+ LPQGLG++++ +NLK K A +D+ + +++ + + E
Sbjct: 28 NYLLPQGLGMLASQANLKAFELERKKLQARMDALRNAAADIAAKLE 73
>sp|Q5GSB6|SUCC_WOLTR Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=sucC PE=3 SV=1
Length = 386
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 58 FKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSK 117
+ T +A+ D+NQI + P E N F+ +AK D+ ++ LR+Y E K
Sbjct: 185 YDTFIAT-DANQIE---INPLVETNSGDFIALDAKISFDDNALYRHPEIVELRDYDEEVK 240
Query: 118 EQ 119
E+
Sbjct: 241 EE 242
>sp|Q5A519|CG121_CANAL Protein CGI121 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CGI121 PE=3 SV=1
Length = 203
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 62 VASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDEEEHFQELLFERLRNYGER 115
+ ++ SN IS++ + + NKY + N K+++ +E FQ +++ L NY +
Sbjct: 29 ITTIKSNLISAT----DNDHNKYDYCFLNTKYIISKEHLFQS-IYKSLLNYTSK 77
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 38 LPQGLGLVSAHSNLKGRRGSFKTAVASVDSNQISSSSVPPEKEANKYYFVVANAKFMLDE 97
+P+ L S +L ++ FK +V SN S+SS+ +K KY + K + D+
Sbjct: 857 IPKISELNSNIKSLADKKNMFKNSVEIYKSNIESNSSILSDKRG-KYEELTKGLKDLTDK 915
Query: 98 EEHFQELLFERLRNYGERSKEQ 119
+E + EL E L+N E +E+
Sbjct: 916 KECY-ELEIENLQNNKEELREK 936
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,109,074
Number of Sequences: 539616
Number of extensions: 2195092
Number of successful extensions: 6121
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6107
Number of HSP's gapped (non-prelim): 23
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)