Query 031631
Match_columns 156
No_of_seqs 78 out of 80
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 04:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jsr_A ALL0216 protein; struct 100.0 2.1E-44 7.2E-49 275.7 3.9 76 80-156 2-79 (119)
2 2id1_A Hypothetical protein; a 22.2 61 0.0021 24.2 2.9 43 83-126 34-81 (130)
3 3ups_A Iojap-like protein; PSI 20.4 78 0.0027 23.8 3.1 43 83-126 50-97 (136)
4 2o5a_A BH1328 protein; BHR21, 18.9 77 0.0026 23.4 2.8 42 83-125 34-80 (125)
5 1se7_A HOT, homologue of the t 18.8 53 0.0018 23.3 1.7 18 99-116 47-64 (83)
6 2yg2_A Apolipoprotein M; lipid 17.9 90 0.0031 24.9 3.1 25 68-92 11-39 (172)
7 1rrz_A Glycogen synthesis prot 17.9 51 0.0017 23.9 1.5 17 99-115 59-75 (86)
8 2wbf_X Serine-repeat antigen p 17.2 51 0.0017 25.5 1.5 13 119-131 218-233 (265)
9 3ukn_A Novel protein similar t 17.1 37 0.0013 24.2 0.6 32 98-134 27-62 (212)
10 3r4r_A Hypothetical fimbrial a 15.9 38 0.0013 29.1 0.5 21 109-129 88-108 (296)
No 1
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Probab=100.00 E-value=2.1e-44 Score=275.72 Aligned_cols=76 Identities=46% Similarity=0.873 Sum_probs=74.4
Q ss_pred ccceEEEEeecccccCcccchhHHHHHHHHHhhhccCceecEEEeeCccccc--cChhhHhhcCCCcEEEEecCCCCCC
Q 031631 80 EANKYYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLD--KFPNITKRLRRPAVALVSTNGPWIT 156 (156)
Q Consensus 80 ~~ttYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~~KeiDFWLV~~PaFLe--efp~ik~klpqPaaAIVSTd~~FIT 156 (156)
+|+||||||||++||| +|||||||||||+|||+|+||+||||||+||+||| +|++|++|||+|||||||||++|||
T Consensus 2 km~tYyfv~AS~~Fll-eeEpleEvLrER~r~Y~e~~KeiDFWlV~~PaFLeap~~~~i~~kl~~P~~AIVSTd~~fIt 79 (119)
T 3jsr_A 2 KMQTYYYVLASRRFLL-QEEPIEEVLKERTRHYHEQEKEIDFWLVPQPAFLEAPEFADIKAKCPQPAAAIISTNSQFIT 79 (119)
T ss_dssp CCEEEEEEEEEHHHHH-TTSCCHHHHHHHHHHHHHTTCCCCEEEEESBGGGGSGGGHHHHHHSCSSEEEEEESCHHHHH
T ss_pred CcceEEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCccEEEecChhhcCchhhHHHHHhCCCCcEEEEecChHHHH
Confidence 6999999999999999 89999999999999999999999999999999999 6999999999999999999999996
No 2
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=22.24 E-value=61 Score=24.23 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=25.9
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhcc-----CceecEEEeeC
Q 031631 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGER-----SKEQDFWLVIE 126 (156)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~-----~KeiDFWLV~~ 126 (156)
+=|||+||.+--- .-..+.+-++++++..+.+ +++-.-|++..
T Consensus 34 ~DyfVIaTg~S~r-qv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLlD 81 (130)
T 2id1_A 34 FQRMIVATGDSNR-QVKALANSVQVKLKEAGVDIVGSEGHESGEWVLVD 81 (130)
T ss_dssp CSEEEEEECSSHH-HHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEEE
T ss_pred cCEEEEEEcCCHH-HHHHHHHHHHHHHHHcCCcCccccCCCCCCEEEEe
Confidence 3489999988542 3345555566666544432 44556687763
No 3
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=20.43 E-value=78 Score=23.84 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=24.2
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhh-----ccCceecEEEeeC
Q 031631 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYG-----ERSKEQDFWLVIE 126 (156)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~-----E~~KeiDFWLV~~ 126 (156)
+=|||+|+.+--- .-..+.+-++|+++.-+ -.|+.-+=|++..
T Consensus 50 ~DyfVIatg~S~r-qv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLlD 97 (136)
T 3ups_A 50 ADYMVIASGRSSR-QVTAMAQKLADRIKAATGYVSKIEGLPAADWVLLD 97 (136)
T ss_dssp CSEEEEEECSSHH-HHHHHHHHHHHHHHHHHCCCCEEESCSSCSEEEEE
T ss_pred cCEEEEEEcCCHH-HHHHHHHHHHHHHHHcCCccCcccCCCCCCEEEEe
Confidence 4589999987442 32344444444444322 2355566788763
No 4
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=18.88 E-value=77 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=24.4
Q ss_pred eEEEEeecccccCcccchhHHHHHHHHHhhhcc-----CceecEEEee
Q 031631 83 KYYFVVANAKFMLDEEEHFQELLFERLRNYGER-----SKEQDFWLVI 125 (156)
Q Consensus 83 tYYfvvAS~kFLl~eEEplEEVLrER~R~Y~E~-----~KeiDFWLV~ 125 (156)
+=|||+||.+--- .-..+.+-++++++..+.+ |++-.=|++.
T Consensus 34 ~DyfVIatg~S~r-qv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl 80 (125)
T 2o5a_A 34 ADFFLICHGNSEK-QVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI 80 (125)
T ss_dssp -CEEEEEEESSHH-HHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEE
T ss_pred cCEEEEEEcCCHH-HHHHHHHHHHHHHHHcCCccccccCCCCCCEEEE
Confidence 3489999988542 3345555555555543332 4455668775
No 5
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=18.79 E-value=53 Score=23.33 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHhhhccC
Q 031631 99 EHFQELLFERLRNYGERS 116 (156)
Q Consensus 99 EplEEVLrER~R~Y~E~~ 116 (156)
|++.+-++||+.||+...
T Consensus 47 e~~R~~F~eRL~~YR~~~ 64 (83)
T 1se7_A 47 ENLRTYFMERLRHYRQLS 64 (83)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788899999999998763
No 6
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC; 1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A
Probab=17.93 E-value=90 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=17.6
Q ss_pred CCCCCCCCCccc----ccceEEEEeeccc
Q 031631 68 NQISSSSVPPEK----EANKYYFVVANAK 92 (156)
Q Consensus 68 d~~~ss~~~~~~----~~ttYYfvvAS~k 92 (156)
++++++.+..+. ..-+||||++...
T Consensus 11 ~~l~t~~~~~~e~p~~~lGkW~FvAGa~~ 39 (172)
T 2yg2_A 11 SQLTTLGVDGKEFPEVHLGQWYFIAGAAP 39 (172)
T ss_dssp CCCCBCCSCC-CHHHHTCEEEEEEEEEES
T ss_pred CcccccccCCccCccceeeEEEEEEeccC
Confidence 466666664444 6889999999984
No 7
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=17.89 E-value=51 Score=23.87 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHhhhcc
Q 031631 99 EHFQELLFERLRNYGER 115 (156)
Q Consensus 99 EplEEVLrER~R~Y~E~ 115 (156)
|.+.+.++||+.||...
T Consensus 59 ee~R~~FreRL~~YRq~ 75 (86)
T 1rrz_A 59 EEHRTWFCARYAWYCQQ 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67889999999999875
No 8
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=17.24 E-value=51 Score=25.51 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=9.7
Q ss_pred ecEEEeeC---ccccc
Q 031631 119 QDFWLVIE---PKFLD 131 (156)
Q Consensus 119 iDFWLV~~---PaFLe 131 (156)
+|||||+| +.|=|
T Consensus 218 ~~YWivkNSWG~~WGe 233 (265)
T 2wbf_X 218 KSYWIVRNSWGPYWGD 233 (265)
T ss_dssp EEEEEEECSBCTTSTB
T ss_pred CCEEEEEcCCCCccCC
Confidence 68999998 45544
No 9
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=17.07 E-value=37 Score=24.24 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHhhhcc----CceecEEEeeCccccccCh
Q 031631 98 EEHFQELLFERLRNYGER----SKEQDFWLVIEPKFLDKFP 134 (156)
Q Consensus 98 EEplEEVLrER~R~Y~E~----~KeiDFWLV~~PaFLeefp 134 (156)
.-.+..-||.|+|.|-+. ++.+| +.+.|+.+|
T Consensus 27 ~~~i~~~l~~rv~~y~~~~~~~~~~~~-----~~~il~~Lp 62 (212)
T 3ukn_A 27 VHRLPKALAQRMLECFQTTWSVNNGID-----VSELLKDFP 62 (212)
T ss_dssp HTTCCHHHHHHHHHHHHHHCCTGGGCC-----CCCTTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCCCC-----HHHHHHHcC
Confidence 456677888888887654 34444 456666655
No 10
>3r4r_A Hypothetical fimbrial assembly protein; transthyretin-like (ALSO known AS prealbumin-like), structur genomics; 2.38A {Parabacteroides distasonis}
Probab=15.93 E-value=38 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHhhhccCceecEEEeeCccc
Q 031631 109 LRNYGERSKEQDFWLVIEPKF 129 (156)
Q Consensus 109 ~R~Y~E~~KeiDFWLV~~PaF 129 (156)
+|-|+..+|..|||.|.||.=
T Consensus 88 l~tfG~~dkkvs~~VVANsT~ 108 (296)
T 3r4r_A 88 VRTFGKEDKKVSVLVVANANN 108 (296)
T ss_dssp EEECCSSCEEEEEEEEESCCC
T ss_pred cccccccccceEEEEEecCcc
Confidence 466888999999999999865
Done!