BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031634
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
           From Schizosaccharomyces Pombe
          Length = 159

 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 34  NVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTC 93
           N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + L  P   K   
Sbjct: 72  NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLIKSDE 130

Query: 94  TVAMPTDNVGCIRRRLEQS 112
            ++   ++V  I RRL QS
Sbjct: 131 NLSFTDEDVSIIVRRLRQS 149


>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
           An Iqgap Protein From Schizosaccharomyces Pombe
          Length = 203

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 34  NVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTC 93
           N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + L  P   K   
Sbjct: 116 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLIKSDE 174

Query: 94  TVAMPTDNVGCIRRRLEQS 112
            ++   ++V  I RRL QS
Sbjct: 175 NLSFTDEDVSIIVRRLRQS 193


>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
          Length = 146

 Score = 35.4 bits (80), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 24  KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83
           +S +++    N+ +F+K     G+  +DLF  +D+ E  N  +V + + +L+ KA+++ L
Sbjct: 65  RSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGL 124


>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
          Length = 136

 Score = 33.1 bits (74), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 24  KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83
           +S++++    N+ +F+K     G+   D+F  +D+ E  N  +V   + +L+  A+++  
Sbjct: 65  ESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKG- 123

Query: 84  NVPDFDKVTCTVAMPT 99
                +KV   V+ P+
Sbjct: 124 -----NKVNVGVSGPS 134


>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
          Length = 108

 Score = 32.3 bits (72), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 27  RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
           +++    N+ +FL+  K  G+   D+F  +D+ E  N  +V   + +L+ +A+++
Sbjct: 54  QNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,488,996
Number of Sequences: 62578
Number of extensions: 120097
Number of successful extensions: 256
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 5
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)