Query 031634
Match_columns 156
No_of_seqs 142 out of 511
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046 Calponin [Cytoskeleton 99.9 6.1E-24 1.3E-28 173.2 4.6 90 14-111 62-155 (193)
2 COG5199 SCP1 Calponin [Cytoske 99.8 3.1E-20 6.7E-25 147.8 3.5 86 15-108 51-139 (178)
3 KOG0532 Leucine-rich repeat (L 99.3 6.3E-13 1.4E-17 123.6 1.2 76 3-79 610-687 (722)
4 KOG2128 Ras GTPase-activating 99.2 7E-12 1.5E-16 123.9 4.6 96 15-112 80-179 (1401)
5 cd00014 CH Calponin homology d 99.2 8.8E-12 1.9E-16 88.5 1.3 64 14-78 39-106 (107)
6 COG5261 IQG1 Protein involved 99.1 3.3E-11 7.2E-16 115.3 4.8 82 16-99 82-167 (1054)
7 smart00033 CH Calponin homolog 98.8 8.9E-10 1.9E-14 77.3 0.2 60 14-74 38-103 (103)
8 PF00307 CH: Calponin homology 98.2 5.9E-07 1.3E-11 63.6 2.1 63 14-78 38-107 (108)
9 KOG2996 Rho guanine nucleotide 98.1 2.7E-06 5.9E-11 80.1 4.0 71 14-84 47-127 (865)
10 PF06395 CDC24: CDC24 Calponin 94.6 0.051 1.1E-06 39.9 3.8 41 32-72 43-86 (89)
11 TIGR03234 OH-pyruv-isom hydrox 38.4 47 0.001 26.7 3.8 53 32-84 83-138 (254)
12 PF01261 AP_endonuc_2: Xylose 37.1 29 0.00062 26.1 2.3 53 32-84 70-127 (213)
13 PF06992 Phage_lambda_P: Repli 34.9 20 0.00044 30.6 1.2 19 33-51 101-124 (233)
14 PRK09997 hydroxypyruvate isome 34.7 56 0.0012 26.6 3.7 52 33-84 85-139 (258)
15 cd00949 FBP_aldolase_I_bact Fr 29.5 3.1E+02 0.0066 24.4 7.5 78 12-90 96-175 (292)
16 PF12844 HTH_19: Helix-turn-he 27.3 20 0.00044 22.9 -0.0 26 32-57 38-63 (64)
17 TIGR03849 arch_ComA phosphosul 26.5 1.3E+02 0.0029 25.6 4.7 71 33-111 71-146 (237)
18 cd00019 AP2Ec AP endonuclease 25.9 64 0.0014 26.4 2.7 53 32-84 84-138 (279)
19 KOG1602 Cis-prenyltransferase 24.6 86 0.0019 27.5 3.3 80 33-116 67-157 (271)
20 PRK09856 fructoselysine 3-epim 24.1 1.5E+02 0.0033 24.0 4.6 52 33-84 90-144 (275)
21 TIGR00542 hxl6Piso_put hexulos 23.4 1.2E+02 0.0026 24.9 3.8 51 33-84 94-148 (279)
22 cd07425 MPP_Shelphs Shewanella 23.1 1.4E+02 0.003 24.0 4.1 53 33-85 8-70 (208)
23 PF11349 DUF3151: Protein of u 22.7 1E+02 0.0023 24.2 3.1 39 59-112 83-121 (129)
24 PRK14831 undecaprenyl pyrophos 22.2 1.2E+02 0.0026 25.8 3.7 76 33-113 51-135 (249)
25 PRK05377 fructose-1,6-bisphosp 20.7 4.2E+02 0.0092 23.6 6.8 78 12-90 99-178 (296)
26 PF12579 DUF3755: Protein of u 20.6 73 0.0016 19.5 1.5 15 28-42 2-16 (35)
No 1
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.89 E-value=6.1e-24 Score=173.24 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=82.0
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC-CCCccc
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL-NVPDFD 89 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~-~~P~lg 89 (156)
+|+|+||++++++. .|.+||||++|++||++|||+++|+|||+||||++|+.+|+.||++|+|+|+++++ ..|.|+
T Consensus 62 ~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g 141 (193)
T KOG2046|consen 62 INKLYPGVVKKINESKMAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIG 141 (193)
T ss_pred HHHhCcCcccccccccccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCCCcC
Confidence 79999999998854 58899999999999999999999999999999999999999999999999999875 458898
Q ss_pred CCCccccCCcchhhhhhhhhhh
Q 031634 90 KVTCTVAMPTDNVGCIRRRLEQ 111 (156)
Q Consensus 90 ~~~~~v~~pk~~~~~~R~~le~ 111 (156)
|+.+++++|+|-+.
T Consensus 142 --------~k~a~kq~r~f~~~ 155 (193)
T KOG2046|consen 142 --------PKLAEKQPREFTDE 155 (193)
T ss_pred --------CchhhcCcccCCHH
Confidence 89999999977553
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.79 E-value=3.1e-20 Score=147.75 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=73.3
Q ss_pred eecCCCCcc--cCCCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhc-CCCCCcccCC
Q 031634 15 YKYELFAPR--KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR-QLNVPDFDKV 91 (156)
Q Consensus 15 n~l~Pgsv~--Ki~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~-g~~~P~lg~~ 91 (156)
|...|+-|+ ..+..|.|||||+.||++.+++|||+.+||||+||||+||.+||++||++|+|+|++. -..+|.+|
T Consensus 51 ~ea~~~~I~yKeSkmpFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lG-- 128 (178)
T COG5199 51 NEASPLDIKYKESKMPFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLG-- 128 (178)
T ss_pred hhcCcccceecccCCceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccC--
Confidence 444555553 3345899999999999999999999999999999999999999999999999999986 45789999
Q ss_pred CccccCCcchhhhhhhh
Q 031634 92 TCTVAMPTDNVGCIRRR 108 (156)
Q Consensus 92 ~~~v~~pk~~~~~~R~~ 108 (156)
|.-++..+|.|
T Consensus 129 ------P~LatKkprvf 139 (178)
T COG5199 129 ------PHLATKKPRVF 139 (178)
T ss_pred ------ccccccCCccc
Confidence 67777777766
No 3
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=6.3e-13 Score=123.65 Aligned_cols=76 Identities=34% Similarity=0.449 Sum_probs=72.5
Q ss_pred ccccccccceeeeecCCCCcccCCCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc--cChHHHHHHHHHHHHHHH
Q 031634 3 LARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK--KNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 3 ~~~~~~~~~~~~n~l~Pgsv~Ki~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~--kN~~qVv~cL~aLgr~A~ 79 (156)
|+||+|||+|++..+...+|+|++ +-+++-|+++||+|||++|||+.||+...|+..+ +|+++|..++.++|.+|+
T Consensus 610 LaN~lRPRSV~SIHVPSPaV~kls-marcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a~ 687 (722)
T KOG0532|consen 610 LANHLRPRSVASIHVPSPAVPKLS-MARCRRNVDNFLEACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKAQ 687 (722)
T ss_pred hhcccCCCCccceecCCCccchhH-HHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhccccC
Confidence 799999999999999999999998 4788899999999999999999999999999987 999999999999998885
No 4
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.22 E-value=7e-12 Score=123.94 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=80.9
Q ss_pred eecCCCCcccC---C-CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccC
Q 031634 15 YKYELFAPRKS---S-RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDK 90 (156)
Q Consensus 15 n~l~Pgsv~Ki---~-~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~ 90 (156)
|.++|..--++ + ..|++-+||..|+.|++.+|+|+...|+|.|+||+|||+ |+.|||||+.+..+.|.+ |.+-.
T Consensus 80 ~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k~~~a-P~l~~ 157 (1401)
T KOG2128|consen 80 QFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFKQGKA-PPLQN 157 (1401)
T ss_pred hhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhcCCCC-ccccc
Confidence 45555443333 2 269999999999999999999999999999999999999 999999999999998864 77878
Q ss_pred CCccccCCcchhhhhhhhhhhc
Q 031634 91 VTCTVAMPTDNVGCIRRRLEQS 112 (156)
Q Consensus 91 ~~~~v~~pk~~~~~~R~~le~~ 112 (156)
+...+.+-++-..++++.|++.
T Consensus 158 ~~gk~~Ft~eei~~~k~~l~~~ 179 (1401)
T KOG2128|consen 158 LSGKVSFTEEEISNMKKELEKS 179 (1401)
T ss_pred ccccCCccHHHHHHHHHHHHHH
Confidence 8888888887777888888765
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.16 E-value=8.8e-12 Score=88.52 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=56.9
Q ss_pred eeecCCCCcccCC----CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAPRKSS----RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA 78 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~----~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A 78 (156)
+|.+.|+.++... ..+.+++||+.|+++|+++||+.. +|++.||+|++|+.+|+.||.+|.++.
T Consensus 39 l~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~-~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 39 LNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee-ccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 3678888887664 367788999999999999999999 999999999999999999999999763
No 6
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.14 E-value=3.3e-11 Score=115.34 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=69.1
Q ss_pred ecCCCCcccC----CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 031634 16 KYELFAPRKS----SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKV 91 (156)
Q Consensus 16 ~l~Pgsv~Ki----~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~ 91 (156)
+++|.++.+| ...|++.+||+.||.....+|+|+..-|+..||||+||+++|++|||||+......|.+ | +-..
T Consensus 82 ~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t-p-li~s 159 (1054)
T COG5261 82 RFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT-P-LINS 159 (1054)
T ss_pred HhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC-c-cccc
Confidence 5678888777 23688999999999999999999999999999999999999999999999999777754 5 5555
Q ss_pred CccccCCc
Q 031634 92 TCTVAMPT 99 (156)
Q Consensus 92 ~~~v~~pk 99 (156)
...+.+-+
T Consensus 160 ~~~~sFt~ 167 (1054)
T COG5261 160 SGQISFTK 167 (1054)
T ss_pred ccCccccH
Confidence 55555544
No 7
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.80 E-value=8.9e-10 Score=77.30 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=51.0
Q ss_pred eeecCCCCcccCCC-----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc-cChHHHHHHHHHH
Q 031634 14 AYKYELFAPRKSSR-----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK-KNTRKVCMCIRSL 74 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~-----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~-kN~~qVv~cL~aL 74 (156)
+|.+.|+.+++... .+.+++||+.|+++|+++| ....+|++.||+++ +++.+|+.||+++
T Consensus 38 ~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g-~~~~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 38 LNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLG-GKLVLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred HHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcC-CeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence 36788888876532 3667799999999999998 67789999999999 8999999999864
No 8
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.23 E-value=5.9e-07 Score=63.56 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=49.5
Q ss_pred eeecCCCCc--ccCC----CCCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAP--RKSS----RSYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA 78 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki~----~~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A 78 (156)
++.+.|+.+ .+++ ..+.+++||..|+++|++ +|++... .+.||++.+|...|+.+|.+|.++-
T Consensus 38 i~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~~~~vl~~l~~l~~~~ 107 (108)
T PF00307_consen 38 INKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGDEKSVLSFLWQLFRYF 107 (108)
T ss_dssp HHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 355667765 3332 225677999999999998 9999988 9999999999999999999998763
No 9
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.09 E-value=2.7e-06 Score=80.09 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=61.7
Q ss_pred eeecCCCCc--ccCCC-----CCCCcccHHHHHHHHH-HcCCCCCCCCCcCccccccChHHHHHHHHHHHH--HHHhcCC
Q 031634 14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKICK-ILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK--KARSRQL 83 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ack-~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr--~A~~~g~ 83 (156)
.|.|.|++| ++|+. .|.+..||..||.+|. .+|+.+.+||+.-|||+-++..+|+.+|..|+. .|+.+|+
T Consensus 47 lnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi 126 (865)
T KOG2996|consen 47 LNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGI 126 (865)
T ss_pred HhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCC
Confidence 578889998 66653 5888899999999998 599999999999999999999999999999985 5677775
Q ss_pred C
Q 031634 84 N 84 (156)
Q Consensus 84 ~ 84 (156)
.
T Consensus 127 ~ 127 (865)
T KOG2996|consen 127 R 127 (865)
T ss_pred C
Confidence 3
No 10
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=94.56 E-value=0.051 Score=39.93 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=32.9
Q ss_pred cccHHHHHHHHH-HcCCCCCCCCCcCccccc--cChHHHHHHHH
Q 031634 32 YSNVDSFLKICK-ILGLTGIDLFSPSDVVEK--KNTRKVCMCIR 72 (156)
Q Consensus 32 ~ENIs~FL~ack-~lGV~~~dLFqT~DLyE~--kN~~qVv~cL~ 72 (156)
-..|-.|+.+|+ ++|+++.++|.-+|||.. ...-+|+..+.
T Consensus 43 K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~~V~ 86 (89)
T PF06395_consen 43 KKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIKVVN 86 (89)
T ss_pred HHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHHHHH
Confidence 367888999998 599999999999999974 45566665554
No 11
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.37 E-value=47 Score=26.74 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCcCc---cccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 32 YSNVDSFLKICKILGLTGIDLFSPSD---VVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFqT~D---LyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
.+++...++.|+.+|.+..-++...+ ..........+..|.+++.+|...|+.
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 37888899999999998765543221 111233467788999999999998864
No 12
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.11 E-value=29 Score=26.12 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=41.3
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCc-----CccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 32 YSNVDSFLKICKILGLTGIDLFSP-----SDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFqT-----~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
.+.+...++.|+.+|++-.-+.-. ...-...+..+++..|..|+.+|.+.|..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 467788888999999877666633 23333478999999999999999999864
No 13
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=34.92 E-value=20 Score=30.59 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=16.3
Q ss_pred ccHHHHHHHHH-----HcCCCCCC
Q 031634 33 SNVDSFLKICK-----ILGLTGID 51 (156)
Q Consensus 33 ENIs~FL~ack-----~lGV~~~d 51 (156)
.+.+.|+.||+ .+|+|..|
T Consensus 101 PS~GqFI~WCk~~~~~~lGLP~~d 124 (233)
T PF06992_consen 101 PSPGQFIAWCKPGDYEALGLPSVD 124 (233)
T ss_pred CChhHHHHHHhcchHHhcCCCCHH
Confidence 68999999999 47998874
No 14
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.66 E-value=56 Score=26.57 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCc---CccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSP---SDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT---~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+...++.|+.+|.+-.-++-. .+..+.......+.+|..++..|.+.|+.
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 56788889999999997655532 23333444677889999999999988864
No 15
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=29.47 E-value=3.1e+02 Score=24.38 Aligned_cols=78 Identities=22% Similarity=0.180 Sum_probs=57.0
Q ss_pred eeeeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634 12 IEAYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD 89 (156)
Q Consensus 12 ~~~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg 89 (156)
|+-.|+.-|..+--++ ..+.+++...-++-|.++|+-....=.....-+...+..|+.....|+..++..|+ +|.++
T Consensus 96 VPgIKVDKGl~~la~Ge~lmk~~~GLD~Ll~R~~~~~~~GaKwRsVIki~~~~~i~aiv~qq~~lA~~cq~~GL-VPIVE 174 (292)
T cd00949 96 VPFLKVDKGLAEEKNGVQLMKPIPNLDELLMRAKEKGVFGTKMRSVIKEANPKGIAAVVDQQFELAKQILSHGL-VPIIE 174 (292)
T ss_pred eeEEEecCCcccCCCCcccCcCCccHHHHHHHHHHhCCCCcceeeEeecCCcchHHHHHHHHHHHHHHHHHcCC-CceEC
Confidence 4445555566654443 24577999999999999987665554445555668889999999999999999996 57666
Q ss_pred C
Q 031634 90 K 90 (156)
Q Consensus 90 ~ 90 (156)
|
T Consensus 175 P 175 (292)
T cd00949 175 P 175 (292)
T ss_pred c
Confidence 3
No 16
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=27.33 E-value=20 Score=22.88 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCcCc
Q 031634 32 YSNVDSFLKICKILGLTGIDLFSPSD 57 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFqT~D 57 (156)
.-.++.+.+.|+.+||+..++|...|
T Consensus 38 ~~~~~~l~~i~~~~~v~~~~l~~~~~ 63 (64)
T PF12844_consen 38 KPSVSTLKKIAEALGVSLDELFDGED 63 (64)
T ss_dssp --BHHHHHHHHHHHTS-HHHHCCCHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHhccCC
Confidence 34588899999999999998887654
No 17
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=26.50 E-value=1.3e+02 Score=25.62 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccccc-cChHHHHHHHHHHHHHHHhcCCCC-CcccCCCccc---cCCcchhhhhhh
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVVEK-KNTRKVCMCIRSLSKKARSRQLNV-PDFDKVTCTV---AMPTDNVGCIRR 107 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLyE~-kN~~qVv~cL~aLgr~A~~~g~~~-P~lg~~~~~v---~~pk~~~~~~R~ 107 (156)
..+..|++.|+++|..-.++ -++ -+++ -.....+-+++++.|+.+ |-+|....+- .-|.+..+.+++
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi------S~G~~~i~--~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 142 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI------SDGSMEIS--LEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINK 142 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE------cCCccCCC--HHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHH
Confidence 78889999999999654433 221 1111 234566678888888864 7777544321 224455666677
Q ss_pred hhhh
Q 031634 108 RLEQ 111 (156)
Q Consensus 108 ~le~ 111 (156)
+|+.
T Consensus 143 ~LeA 146 (237)
T TIGR03849 143 DLEA 146 (237)
T ss_pred HHHC
Confidence 7764
No 18
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.86 E-value=64 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCcCcc--ccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 32 YSNVDSFLKICKILGLTGIDLFSPSDV--VEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFqT~DL--yE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
++.+..-+++|+.+|.+-.-++..... ........++..|..|++.|...|+.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV 138 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE
Confidence 366777788888999986655544332 22445678889999999999888764
No 19
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=24.57 E-value=86 Score=27.50 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH-----------HhcCCCCCcccCCCccccCCcch
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA-----------RSRQLNVPDFDKVTCTVAMPTDN 101 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A-----------~~~g~~~P~lg~~~~~v~~pk~~ 101 (156)
+-+..+|++|.++||+..-.|--+ +-.=|.-+.=|.+|+.|++.- ++.|...-.+|. ---+|++.
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFS-ieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGd---lslL~~~l 142 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFS-IENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGD---LSLLPESL 142 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEe-hhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcc---hhhCCHHH
Confidence 667789999999999987666433 112244455568888886432 233433333333 23567777
Q ss_pred hhhhhhhhhhccccc
Q 031634 102 VGCIRRRLEQSQRRF 116 (156)
Q Consensus 102 ~~~~R~~le~~~~~~ 116 (156)
.+.+++-.|..+.+.
T Consensus 143 ~k~i~~ieE~Tknn~ 157 (271)
T KOG1602|consen 143 RKAIKKIEEATKNNT 157 (271)
T ss_pred HHHHHHHHHHhhcCC
Confidence 777776666666554
No 20
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.10 E-value=1.5e+02 Score=23.96 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccc---cccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVV---EKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLy---E~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+-+..-+++|+.+|.+-.-++-+.+-+ ...+..+++..|..|+..|...|+.
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 566667888889999876554432222 2345688999999999999999874
No 21
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.44 E-value=1.2e+02 Score=24.88 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccc-c---ccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVV-E---KKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLy-E---~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+...++.|+.+|.+-.-++ ..+.. + ......++..|..++..|.+.|+.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~ 148 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLA-GYDVYYEEHDEETRRRFREGLKEAVELAARAQVT 148 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEec-CcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 557778888899999877544 33322 2 233677888999999999998863
No 22
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=23.11 E-value=1.4e+02 Score=24.04 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHcCC---------CCCCCCCcCcccc-ccChHHHHHHHHHHHHHHHhcCCCC
Q 031634 33 SNVDSFLKICKILGL---------TGIDLFSPSDVVE-KKNTRKVCMCIRSLSKKARSRQLNV 85 (156)
Q Consensus 33 ENIs~FL~ack~lGV---------~~~dLFqT~DLyE-~kN~~qVv~cL~aLgr~A~~~g~~~ 85 (156)
.|...|.+..+..|+ +...+...-|+.+ +.+..+|+.-|.+|...|.+.|..+
T Consensus 8 G~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v 70 (208)
T cd07425 8 GDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKV 70 (208)
T ss_pred CCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeE
Confidence 367778888888876 4668888999998 4788999999999998887765443
No 23
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=22.67 E-value=1e+02 Score=24.20 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=27.4
Q ss_pred ccccChHHHHHHHHHHHHHHHhcCCCCCcccCCCccccCCcchhhhhhhhhhhc
Q 031634 59 VEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQS 112 (156)
Q Consensus 59 yE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~~~~v~~pk~~~~~~R~~le~~ 112 (156)
|+..-=+-|..||.+|++.|+.. | ..+-...++.||.-.
T Consensus 83 w~HePNrGfLRal~aLa~AA~~I-------G--------E~dE~~Rc~~~L~Ds 121 (129)
T PF11349_consen 83 WSHEPNRGFLRALAALARAAQAI-------G--------ETDEYDRCRQFLRDS 121 (129)
T ss_pred CccCCccHHHHHHHHHHHHHHHh-------C--------ChhHHHHHHHHHHhC
Confidence 33334456899999999999874 4 455566778887643
No 24
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.25 E-value=1.2e+02 Score=25.84 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcC-ccccccChHHHHHHHHHHHH--------HHHhcCCCCCcccCCCccccCCcchhh
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPS-DVVEKKNTRKVCMCIRSLSK--------KARSRQLNVPDFDKVTCTVAMPTDNVG 103 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~-DLyE~kN~~qVv~cL~aLgr--------~A~~~g~~~P~lg~~~~~v~~pk~~~~ 103 (156)
+.+...+.||.++||+..-+|--+ +=| +++-.. +..|+.|-. .....|..+-.+|... .+|++...
T Consensus 51 ~~l~~i~~~c~~~GI~~vT~yaFS~eN~-kR~~~E-v~~Lm~L~~~~l~~~~~~~~~~~iri~~iG~~~---~Lp~~l~~ 125 (249)
T PRK14831 51 DALKDLLRCCKDWGIGALTAYAFSTENW-SRPLEE-VNFLMTLFERVLRRELEELMEENVRIRFVGDLD---PLPKSLQE 125 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhh-CcCHHH-HHHHHHHHHHHHHHHHHHHHHCCcEEEEEechh---hCCHHHHH
Confidence 899999999999999988776544 333 333333 344544432 3345566555565433 46776665
Q ss_pred hhhhhhhhcc
Q 031634 104 CIRRRLEQSQ 113 (156)
Q Consensus 104 ~~R~~le~~~ 113 (156)
.+.+-.+..+
T Consensus 126 ~i~~~e~~T~ 135 (249)
T PRK14831 126 EISRSTELTK 135 (249)
T ss_pred HHHHHHHHhc
Confidence 5554434333
No 25
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.70 E-value=4.2e+02 Score=23.56 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred eeeeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634 12 IEAYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD 89 (156)
Q Consensus 12 ~~~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg 89 (156)
|+-.|+.-|.++--++ .-+++++...-++-|.++|+-....=.....-....+..++..+...++.++..|+ +|.++
T Consensus 99 VPgIKVDKGl~~l~~gvql~k~~~GLD~Ll~R~~~y~~~GaKwRsViki~~~~~I~~na~qlaryA~~~q~~GL-VPIVE 177 (296)
T PRK05377 99 VPFLKVDKGLAEEANGVQLMKPIPNLDDLLDRAVEKGIFGTKMRSVIKEANEQGIAAVVAQQFEVAKQILAAGL-VPIIE 177 (296)
T ss_pred ceEEEecCCcccCCCCccccccCCCHHHHHHHHHHhCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHHcCC-CceEC
Confidence 3344555555554443 24567999999999999987654443333333456677777778888888888886 56665
Q ss_pred C
Q 031634 90 K 90 (156)
Q Consensus 90 ~ 90 (156)
|
T Consensus 178 P 178 (296)
T PRK05377 178 P 178 (296)
T ss_pred C
Confidence 3
No 26
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=20.57 E-value=73 Score=19.49 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=9.9
Q ss_pred CCCCcccHHHHHHHH
Q 031634 28 SYMPYSNVDSFLKIC 42 (156)
Q Consensus 28 ~f~~~ENIs~FL~ac 42 (156)
+|+..|||+.|.++=
T Consensus 2 t~q~~eNidLf~~~R 16 (35)
T PF12579_consen 2 TFQLQENIDLFCQTR 16 (35)
T ss_pred CcchhhhHHHHHHHH
Confidence 456667887776653
Done!