Query 031634
Match_columns 156
No_of_seqs 142 out of 511
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyn_A Calponin-2; CH domain, 99.9 3E-28 1E-32 188.4 2.3 90 14-111 52-145 (146)
2 1wym_A Transgelin-2; CH domain 99.9 3.1E-27 1.1E-31 184.1 2.8 91 14-108 58-154 (155)
3 1wyp_A Calponin 1; CH domain, 99.9 2.7E-26 9.3E-31 175.5 2.9 75 14-89 52-129 (136)
4 1p2x_A RNG2 protein, RAS GTPas 99.9 3.1E-25 1.1E-29 173.5 6.8 105 14-119 48-156 (159)
5 1ujo_A Transgelin; CH domain, 99.9 3.9E-25 1.3E-29 170.5 3.2 77 14-90 50-137 (144)
6 1p5s_A RAS GTPase-activating-l 99.9 5E-24 1.7E-28 172.8 7.0 106 14-120 92-201 (203)
7 3i6x_A P195, RAS GTPase-activa 99.9 4.9E-24 1.7E-28 171.9 5.8 95 14-109 84-191 (193)
8 2rr8_A Iqgap1 protein; F-actin 99.9 8.9E-24 3.1E-28 169.5 6.8 76 14-90 62-150 (190)
9 1h67_A Calponin alpha; cytoske 99.9 2.7E-24 9.4E-29 158.2 2.2 68 14-81 38-108 (108)
10 2l3g_A RHO guanine nucleotide 99.8 5.9E-22 2E-26 150.2 2.1 67 14-83 55-126 (126)
11 1wyr_A RHO guanine nucleotide 99.8 1.3E-21 4.6E-26 147.0 1.8 64 14-80 49-116 (121)
12 3ky9_A Proto-oncogene VAV; cal 99.7 2.8E-18 9.7E-23 154.1 1.9 71 14-84 50-130 (587)
13 2yrn_A Neuron navigator 2 isof 98.4 7.5E-08 2.6E-12 71.8 2.5 65 14-80 57-125 (129)
14 1pxy_A Fimbrin-like protein; c 97.7 5E-06 1.7E-10 73.9 0.7 50 14-64 53-109 (506)
15 1wku_A Alpha-actinin 3; calpon 97.1 0.0001 3.5E-09 60.4 0.8 64 14-79 64-130 (254)
16 1rt8_A Fimbrin; filamentous ac 96.8 0.00017 5.8E-09 64.3 -0.6 65 14-79 58-132 (513)
17 1aoa_A T-fimbrin; actin-bindin 96.6 0.00025 8.5E-09 58.4 -0.5 61 14-76 70-136 (275)
18 1dxx_A Dystrophin; structural 96.5 0.00088 3E-08 54.3 2.0 59 15-75 55-115 (246)
19 1sh5_A Plectin 1, PLTN, PCN; a 96.4 0.00087 3E-08 54.2 1.5 112 14-131 54-170 (245)
20 2wa7_A Filamin-B; disease muta 95.9 0.0023 7.8E-08 51.9 1.4 63 14-78 57-124 (245)
21 2qjz_A Microtubule-associated 95.8 0.0035 1.2E-07 47.1 1.8 62 14-78 38-105 (123)
22 1wyo_A Protein EB3, microtubul 95.3 0.0079 2.7E-07 47.1 2.5 63 14-79 55-123 (159)
23 1rt8_A Fimbrin; filamentous ac 95.2 0.008 2.7E-07 53.5 2.5 113 15-132 321-448 (513)
24 3f7p_A Plectin-1; plakin, hemi 92.8 0.035 1.2E-06 46.8 1.5 65 14-80 110-176 (296)
25 1sjj_A Actinin; 3-helix bundle 87.3 0.23 7.8E-06 45.6 2.0 60 14-75 45-107 (863)
26 3hoc_A Filamin-A; calponin hom 79.6 0.7 2.4E-05 38.3 1.7 63 15-79 85-152 (272)
27 1wjo_A T-plastin; CH domain, a 74.7 0.69 2.3E-05 34.5 0.3 46 14-61 47-98 (124)
28 2vzc_A Alpha-parvin; membrane, 57.2 1.9 6.4E-05 31.9 -0.4 34 28-62 79-112 (131)
29 1pxy_A Fimbrin-like protein; c 55.2 6 0.00021 34.8 2.5 58 15-74 312-376 (506)
30 3zyl_A Phosphatidylinositol-bi 47.8 5.9 0.0002 32.6 1.1 22 31-52 250-271 (271)
31 3l23_A Sugar phosphate isomera 45.4 20 0.00069 28.5 3.9 53 32-84 107-159 (303)
32 2d89_A EHBP1 protein; all alph 43.2 17 0.00058 26.1 2.9 58 15-74 48-108 (119)
33 3nrw_A Phage integrase/site-sp 36.0 57 0.0019 21.8 4.6 67 33-102 34-111 (117)
34 2wa7_A Filamin-B; disease muta 35.6 16 0.00054 29.1 1.8 56 15-72 179-237 (245)
35 3u0h_A Xylose isomerase domain 35.4 31 0.0011 26.1 3.4 52 33-84 84-137 (281)
36 1wyl_A NEDD9 interacting prote 34.3 23 0.00078 25.3 2.3 39 31-71 63-102 (116)
37 3obe_A Sugar phosphate isomera 34.2 31 0.0011 27.4 3.4 52 33-84 114-165 (305)
38 2d87_A Smoothelin splice isofo 32.6 57 0.002 23.6 4.3 67 15-83 46-116 (128)
39 1wku_A Alpha-actinin 3; calpon 30.7 28 0.00094 27.9 2.5 60 15-76 179-242 (254)
40 3omt_A Uncharacterized protein 28.1 36 0.0012 20.8 2.3 25 33-57 48-72 (73)
41 1aoa_A T-fimbrin; actin-bindin 26.0 44 0.0015 26.8 2.9 34 31-67 233-266 (275)
42 3tva_A Xylose isomerase domain 25.9 59 0.002 24.9 3.6 51 32-84 101-154 (290)
43 2q02_A Putative cytoplasmic pr 24.1 93 0.0032 23.3 4.4 50 33-84 85-135 (272)
44 1wyq_A Spectrin beta chain, br 24.0 1.1E+02 0.0039 21.9 4.7 62 15-78 46-110 (127)
45 3ngf_A AP endonuclease, family 22.8 76 0.0026 24.2 3.7 52 33-84 93-146 (269)
46 3hoc_A Filamin-A; calponin hom 22.7 33 0.0011 28.0 1.6 45 15-61 206-253 (272)
47 3dx5_A Uncharacterized protein 22.0 81 0.0028 24.0 3.7 52 33-84 84-138 (286)
48 3gna_A RAG-1, V(D)J recombinat 21.1 70 0.0024 22.6 2.8 23 57-79 52-74 (96)
No 1
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.94 E-value=3e-28 Score=188.44 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=84.8
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC-CCCccc
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL-NVPDFD 89 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~-~~P~lg 89 (156)
+|+|+||+|+||+. +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|+++|.++|+ ++|.+|
T Consensus 52 ~N~l~P~~v~kin~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~~~p~~g 131 (146)
T 1wyn_A 52 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSGVDIG 131 (146)
T ss_dssp HHHHCTTSCSCCCCSSCHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCSHHHHHHHHHHHHHHGGGTSCCCSCCC
T ss_pred HHHhCCCCccccccccccccHHHHHHHHHHHHHHcCCCcccccChhHHHhcCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 68999999999975 58889999999999999999999999999999999999999999999999999998 689999
Q ss_pred CCCccccCCcchhhhhhhhhhh
Q 031634 90 KVTCTVAMPTDNVGCIRRRLEQ 111 (156)
Q Consensus 90 ~~~~~v~~pk~~~~~~R~~le~ 111 (156)
|+.+++|.|+|.|+
T Consensus 132 --------~k~a~~~~r~f~e~ 145 (146)
T 1wyn_A 132 --------VKYSEKQERSGPSS 145 (146)
T ss_dssp --------CCCCCCCCCCSSCC
T ss_pred --------eeccccCCCCCCCC
Confidence 89999999999774
No 2
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.1e-27 Score=184.13 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=82.9
Q ss_pred eeecCC---CCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCc
Q 031634 14 AYKYEL---FAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPD 87 (156)
Q Consensus 14 ~n~l~P---gsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~ 87 (156)
+|+|+| |+|+||+. +|++||||++||+||+.||||++++|+|+||||++|+++|+.||++|+++|+++|. +|.
T Consensus 58 ~N~l~P~~~~~i~kIn~~~~~F~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~-gp~ 136 (155)
T 1wym_A 58 INALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDD-GLF 136 (155)
T ss_dssp HHHHSCTTTCSCCCCCCCCCHHHHHHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCSS-SCC
T ss_pred HHHhccccCCCcCcccCCCccccHHHHHHHHHHHHHHcCCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCCC-CCc
Confidence 688999 99999975 48899999999999999999999999999999999999999999999999999997 888
Q ss_pred ccCCCccccCCcchhhhhhhh
Q 031634 88 FDKVTCTVAMPTDNVGCIRRR 108 (156)
Q Consensus 88 lg~~~~~v~~pk~~~~~~R~~ 108 (156)
+|.+ -+.||.+++|.|+.
T Consensus 137 ~g~p---~~~~k~a~~n~r~~ 154 (155)
T 1wym_A 137 SGDP---NWFPKKSKESGPSS 154 (155)
T ss_dssp CSCS---SSSCCCCCCCCSSC
T ss_pred CCCC---CCCCcccccCCCCC
Confidence 8744 35689999999974
No 3
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-26 Score=175.48 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=71.7
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD 89 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg 89 (156)
+|+++||+|+||+. +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|+++|+++| .+|.+|
T Consensus 52 ~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g-~~p~~g 129 (136)
T 1wyp_A 52 INKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKG-NKVNVG 129 (136)
T ss_dssp HHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCSHHHHHHHHHHHHHHHHHT-CCCCCC
T ss_pred HHhhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcccccCchHHhcCCCHHHHHHHHHHHHHHHHHCC-CCCcCc
Confidence 68999999999964 5888999999999999999999999999999999999999999999999999999 899999
No 4
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.91 E-value=3.1e-25 Score=173.50 Aligned_cols=105 Identities=28% Similarity=0.320 Sum_probs=86.1
Q ss_pred eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634 14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD 89 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg 89 (156)
+|+|+||+|+||+. +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|++.|++.|. +|.++
T Consensus 48 ~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~Vi~~L~aL~~~~~~~g~-~p~~~ 126 (159)
T 1p2x_A 48 VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLI 126 (159)
T ss_dssp HHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTTS-SCCCC
T ss_pred HHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CCCch
Confidence 68999999999953 69999999999999999999999999999999999999999999999999999986 68776
Q ss_pred CCCccccCCcchhhhhhhhhhhcccccCCC
Q 031634 90 KVTCTVAMPTDNVGCIRRRLEQSQRRFLSN 119 (156)
Q Consensus 90 ~~~~~v~~pk~~~~~~R~~le~~~~~~~~~ 119 (156)
.......+..|-...-+..|+..+...+++
T Consensus 127 ~~~~~~~fseeql~~~~~~l~~~g~~~~~f 156 (159)
T 1p2x_A 127 KSDENLSFTDEDVSIIVRRLRQSNVILPNF 156 (159)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCCCCCCCG
T ss_pred hhhccCCCCHHHHHHHHHHHHHcCCCCCCc
Confidence 544444555555545556676655554443
No 5
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.90 E-value=3.9e-25 Score=170.51 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=70.5
Q ss_pred eeecCC---CCcc-cCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcC---C
Q 031634 14 AYKYEL---FAPR-KSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ---L 83 (156)
Q Consensus 14 ~n~l~P---gsv~-Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g---~ 83 (156)
+|+|+| |+|+ ||+. +|++||||++||+||++||||++++|+|+||||++|+++|+.||++|+++|.+++ +
T Consensus 50 ~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~~~~~~~ 129 (144)
T 1ujo_A 50 VNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKNDGNY 129 (144)
T ss_dssp HHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHHHHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 688888 8888 8874 5889999999999999999999999999999999999999999999999999885 6
Q ss_pred CC-CcccC
Q 031634 84 NV-PDFDK 90 (156)
Q Consensus 84 ~~-P~lg~ 90 (156)
.+ |.+|+
T Consensus 130 ~g~P~~~~ 137 (144)
T 1ujo_A 130 RGDPNWFM 137 (144)
T ss_dssp SSCSTTTC
T ss_pred CCCCCCCc
Confidence 77 88883
No 6
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.89 E-value=5e-24 Score=172.84 Aligned_cols=106 Identities=27% Similarity=0.314 Sum_probs=86.8
Q ss_pred eeecCCCCcccCC----CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634 14 AYKYELFAPRKSS----RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD 89 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~----~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg 89 (156)
+|+|+||+|+||+ .+|+++|||++||+||++||||++++|+|+||||++|+++|+.||++|++.|+++|+ +|.++
T Consensus 92 iN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g~-~p~l~ 170 (203)
T 1p5s_A 92 VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLI 170 (203)
T ss_dssp HHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTTS-SCCCC
T ss_pred HHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhcCC-CCchh
Confidence 6899999999994 369999999999999999999999999999999999999999999999999999987 47776
Q ss_pred CCCccccCCcchhhhhhhhhhhcccccCCCC
Q 031634 90 KVTCTVAMPTDNVGCIRRRLEQSQRRFLSNA 120 (156)
Q Consensus 90 ~~~~~v~~pk~~~~~~R~~le~~~~~~~~~~ 120 (156)
.......+..|....-+..+++.+...++++
T Consensus 171 ~l~~~~~Fseeql~~~n~~l~q~G~~~~~F~ 201 (203)
T 1p5s_A 171 KSDENLSFTDEDVSIIVRRLRQSNVILPNFK 201 (203)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCCCCCCCST
T ss_pred hhcccCCCCHHHHHHHHHHHHHcCCCCCCCC
Confidence 5433344444444345567777776655554
No 7
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.89 E-value=4.9e-24 Score=171.89 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=78.9
Q ss_pred eeecCCCCcc--cC-----------CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634 14 AYKYELFAPR--KS-----------SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS 80 (156)
Q Consensus 14 ~n~l~Pgsv~--Ki-----------~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~ 80 (156)
+|+|+||+|+ || ..+|++||||++||+||+++|||+.++|+|+||||++|+++|+.||++||++|.+
T Consensus 84 ~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~~ 163 (193)
T 3i6x_A 84 GNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFK 163 (193)
T ss_dssp HHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 5677777773 55 2479999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCccccCCcchhhhhhhhh
Q 031634 81 RQLNVPDFDKVTCTVAMPTDNVGCIRRRL 109 (156)
Q Consensus 81 ~g~~~P~lg~~~~~v~~pk~~~~~~R~~l 109 (156)
+|+. |.++.+...+.+..+-....+..|
T Consensus 164 ~G~~-P~i~~l~g~~~Ft~eei~~~~~~l 191 (193)
T 3i6x_A 164 LGLA-PQIQDLYGKVDFTEEEINNMKTEL 191 (193)
T ss_dssp TTSS-CCCCCCTTTCCCCHHHHHHHHHHT
T ss_pred CCCC-CCcccccCCCCcCHHHHHHHHHHh
Confidence 9986 888876555666555544444444
No 8
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.89 E-value=8.9e-24 Score=169.46 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=66.7
Q ss_pred eeecCCCCc--ccC-----------CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634 14 AYKYELFAP--RKS-----------SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS 80 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki-----------~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~ 80 (156)
+|+|+||+| +|| ..+|++||||++||+||++||||++++|+|+||||++|+++|+.||++||++|++
T Consensus 62 ~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~~ 141 (190)
T 2rr8_A 62 GNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFK 141 (190)
T ss_dssp HHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 466777766 454 3479999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccC
Q 031634 81 RQLNVPDFDK 90 (156)
Q Consensus 81 ~g~~~P~lg~ 90 (156)
+|+ +|.++.
T Consensus 142 ~g~-~P~~~~ 150 (190)
T 2rr8_A 142 LGL-APQIQD 150 (190)
T ss_dssp SSC-CCCCCC
T ss_pred CCC-CCCccc
Confidence 996 566653
No 9
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.88 E-value=2.7e-24 Score=158.22 Aligned_cols=68 Identities=22% Similarity=0.373 Sum_probs=64.0
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhc
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~ 81 (156)
+|+++||+|+||+. +|+++|||++||+||+.+|||+.++|+|+||||++|+++|+.||++||++|.++
T Consensus 38 ~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~~l~aL~~~a~~k 108 (108)
T 1h67_A 38 INKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108 (108)
T ss_dssp HHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcccccChhHHHhCCChHHHHHHHHHHHHHHccC
Confidence 68899999999964 688889999999999999999999999999999999999999999999999864
No 10
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-22 Score=150.24 Aligned_cols=67 Identities=24% Similarity=0.237 Sum_probs=62.0
Q ss_pred eeecCCCCcccCCC----CCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC
Q 031634 14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~ 83 (156)
+|+++||+|+||+. +|+++|||++||+||++ +|+ ++|+|+||||++|+++|+.||++||++|++.|.
T Consensus 55 iN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~ 126 (126)
T 2l3g_A 55 LERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL 126 (126)
T ss_dssp HHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHHHHHHHHHHHHHHHHHccC
Confidence 68999999999953 38889999999999999 996 999999999999999999999999999998773
No 11
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-21 Score=146.99 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=59.9
Q ss_pred eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634 14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS 80 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~ 80 (156)
+|+++||+|+||+. .|+++|||++||+||+.+|+ ++|+|+||||++|+++|+.||++|+|+|++
T Consensus 49 ~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~---~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~ 116 (121)
T 1wyr_A 49 INRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFSKVLSTLLAVNKATES 116 (121)
T ss_dssp HHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHTCSCHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCC---CccCHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 68999999999953 38899999999999999997 999999999999999999999999999986
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.69 E-value=2.8e-18 Score=154.10 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=62.6
Q ss_pred eeecCCCCc--ccCCC-----CCCCcccHHHHHHHH-HHcCCCCCCCCCcCccccccChHHHHHHHHHHHH--HHHhcCC
Q 031634 14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKIC-KILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK--KARSRQL 83 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ac-k~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr--~A~~~g~ 83 (156)
+|+|+||+| ++|+. .|++||||++||+|| +++|||+.++|+|+||||++|+++|+.||++||+ .|.+.|.
T Consensus 50 ~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~ 129 (587)
T 3ky9_A 50 LNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGI 129 (587)
T ss_dssp HHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCCHHHHHTCSCHHHHHHHHHHHHHSTTTGGGTC
T ss_pred HHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHcCCCHHHcCCchhhhccCCcchHHHHHHHHhhhhhhhccCC
Confidence 688889998 47753 488999999999999 7899999999999999999999999999999999 4555576
Q ss_pred C
Q 031634 84 N 84 (156)
Q Consensus 84 ~ 84 (156)
.
T Consensus 130 ~ 130 (587)
T 3ky9_A 130 M 130 (587)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.5e-08 Score=71.84 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=56.6
Q ss_pred eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634 14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS 80 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~ 80 (156)
+|.|.|+++++++. .|+.+|||+.||++++.+|++..++ .+.|++| +|+..|+.+|.+|.|+-+.
T Consensus 57 le~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~~~i-~~~DI~d-gn~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 57 IQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGINIQGL-SAEEIRN-GNLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp HHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHHTCCCTTC-CHHHHHH-TCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHhCCcccCC-Chhhhhc-CCHhHHHHHHHHHHHHHhh
Confidence 46788999988863 5777899999999999999999887 6999997 9999999999999987653
No 14
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.75 E-value=5e-06 Score=73.95 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=43.9
Q ss_pred eeecCCCCc--ccCCC-----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccCh
Q 031634 14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNT 64 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~ 64 (156)
+|++.||++ ++++. .|+++|||+.||++|+.+|++..++ +++||+|+++.
T Consensus 53 in~l~~~~i~~~~in~~~~~~~~~~~eNi~~~L~~~k~~g~~~~~i-~~~Dl~dg~~~ 109 (506)
T 1pxy_A 53 INVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNI-GTQDLAEGRPH 109 (506)
T ss_dssp HHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHHTCHH
T ss_pred HHHHcCCCCCccccCccccccHHHHHHHHHHHHHHHHHhCCCcCCC-CHHHHhcCChH
Confidence 578899999 77763 3678899999999999999999998 99999999874
No 15
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=97.10 E-value=0.0001 Score=60.41 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=49.5
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~ 79 (156)
+|.|.|+.+++++. .|+++|||+.||++++++||+-.++ ++.|++|+ |...+.--|..|-++-+
T Consensus 64 le~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~lv~I-~~~DIvdG-~~kliLgLlW~li~~~~ 130 (254)
T 1wku_A 64 LEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSI-GAEEIVDG-NLKMTLGMIWTIILRFA 130 (254)
T ss_dssp HHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCCCSC-CHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCccCC-CHHHHhcc-chHHHHHHHHHHHHHHh
Confidence 46678888887643 4677799999999999999998876 99999987 56666665666655544
No 16
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=96.78 E-value=0.00017 Score=64.30 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=48.3
Q ss_pred eeecCCCCc--ccCCC--------CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAP--RKSSR--------SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 14 ~n~l~Pgsv--~Ki~~--------~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~ 79 (156)
+|++.||++ ++++. .|+++|||+.||++++.+|++...-|++.||+|++. ..++--|..|-++-+
T Consensus 58 ie~l~~~~i~~~~i~~~~~~~~~~~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~-~liLgLiW~li~~~~ 132 (513)
T 1rt8_A 58 INDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE-HLILGLVWQIIRRGL 132 (513)
T ss_dssp HHHHSTTSSCGGGSCCCC---CCCHHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCH-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCCcchhhcCCccccCcccHHHHHHHHHHHHHHHHHcCCCccCCcCHHhhhcCCH-HHHHHHHHHHHHHhh
Confidence 577888888 46653 356779999999999999998889999999999763 344444444444443
No 17
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=96.64 E-value=0.00025 Score=58.38 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=45.3
Q ss_pred eeecCCCCcc--cCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHH
Q 031634 14 AYKYELFAPR--KSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK 76 (156)
Q Consensus 14 ~n~l~Pgsv~--Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr 76 (156)
+|.+.||+++ +++. .|+.+|||+.||++++++|++-.++ ++.||+|++ ...++.-|..|-+
T Consensus 70 le~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~-~~liLgLlw~li~ 136 (275)
T 1aoa_A 70 INLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAGK-PHLVLGLLWQIIK 136 (275)
T ss_dssp HHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHcCc-HHHHHHHHHHHHH
Confidence 4678899885 6653 3667899999999999999998875 999999975 3344444444444
No 18
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=96.52 E-value=0.00088 Score=54.32 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=43.3
Q ss_pred eecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHH
Q 031634 15 YKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLS 75 (156)
Q Consensus 15 n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLg 75 (156)
++|.|+.+++.++ .|+.+|||+.+|++++++|++-.. +++.|++|+. ...+..-|..|-
T Consensus 55 e~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~-I~~~DIvdg~-~~liL~Llw~li 115 (246)
T 1dxx_A 55 EGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVN-IGSTDIVDGN-HKLTLGLIWNII 115 (246)
T ss_dssp HHHHSCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHcCCcCCCCCCccHHHHHHHHHHHHHHHHHcCCcccc-CCHHHhhccc-HHHHHHHHHHHH
Confidence 4566677766543 477889999999999999999887 8999999984 344433333443
No 19
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=96.43 E-value=0.00087 Score=54.16 Aligned_cols=112 Identities=10% Similarity=0.038 Sum_probs=67.0
Q ss_pred eeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 031634 14 AYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKV 91 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~ 91 (156)
++.|.|+.+++.+. .|+.+|||+.+|+++++.|++-.++ ++.|++|+. ...++.-|..|-++-+-...... | .
T Consensus 54 le~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~-~k~iLgLlw~li~~~~i~~i~~~--g-~ 128 (245)
T 1sh5_A 54 LEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGN-PKLTLGLIWTIILHFQISDIQVS--G-Q 128 (245)
T ss_dssp HHHHHCCCCCCCCCCSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTC-HHHHHHHHHHHHHHHTTTTCCCT--T-C
T ss_pred HHHhcCccccCCCCcchHHHHHhHHHHHHHHHHcCCcccCC-ChHhhhccc-HHHHHHHHHHHHHhhcccccccc--c-c
Confidence 35667777776543 5778899999999999999998887 899999984 45555555666665443222110 1 0
Q ss_pred CccccCCc-chhhhhhhhhhhc-ccccCCC-CCCCcccchhhh
Q 031634 92 TCTVAMPT-DNVGCIRRRLEQS-QRRFLSN-ANLNSDRVLTAD 131 (156)
Q Consensus 92 ~~~v~~pk-~~~~~~R~~le~~-~~~~~~~-~~~n~~r~~~~~ 131 (156)
.... -++ .+..+.+..++.- .....+. ++-+.++.+.+.
T Consensus 129 ~~~~-~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aL 170 (245)
T 1sh5_A 129 SEDM-TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAI 170 (245)
T ss_dssp CSSC-CHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHH
T ss_pred cccC-CHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHH
Confidence 1111 123 3566777776642 1122232 345556666443
No 20
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=95.89 E-value=0.0023 Score=51.92 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=45.8
Q ss_pred eeecCCCCc-ccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAP-RKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA 78 (156)
Q Consensus 14 ~n~l~Pgsv-~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A 78 (156)
++.|.|+.+ ++++. .++.+|||+.+|++++++|++-..+ ++.|++|++ ...+.--|..|-++-
T Consensus 57 le~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~lv~I-~~~DIvdG~-~kliLgLlW~li~~~ 124 (245)
T 2wa7_A 57 LEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGN-LKLILGLVWTLILHY 124 (245)
T ss_dssp HHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCCcccCC-CHHHhhCCC-HHHHHHHHHHHHHHH
Confidence 356778888 67653 2456799999999999999988775 899999985 444444445555443
No 21
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=95.77 E-value=0.0035 Score=47.12 Aligned_cols=62 Identities=13% Similarity=-0.042 Sum_probs=43.6
Q ss_pred eeecCCCCcc--cCC-C---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAPR--KSS-R---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA 78 (156)
Q Consensus 14 ~n~l~Pgsv~--Ki~-~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A 78 (156)
+|.|.||+|+ |++ . .|..++||..|.++++++||++. +....|.-++-. -=..=+.++-+.-
T Consensus 38 md~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~--i~v~kLvkgk~q-dnleflqW~k~f~ 105 (123)
T 2qjz_A 38 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI--IPVDKLVKGKFQ-DNFEFVQWFKKFF 105 (123)
T ss_dssp HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTCCHH-HHHHHHHHHHHHH
T ss_pred HHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCc--cCHHHHHcCCch-hHHHHHHHHHHHH
Confidence 4789999998 886 3 46677999999999999999964 555556666532 2234455554444
No 22
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.34 E-value=0.0079 Score=47.14 Aligned_cols=63 Identities=14% Similarity=0.002 Sum_probs=45.7
Q ss_pred eeecCCCCcc--cCC-C---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634 14 AYKYELFAPR--KSS-R---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 14 ~n~l~Pgsv~--Ki~-~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~ 79 (156)
+|.|.||+|+ |++ . .|..++||..|.++++++||++. +....|.-++-... ..=|.++-+.-.
T Consensus 55 md~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~--ipV~kLvkgk~qdN-lEFlqWfk~f~d 123 (159)
T 1wyo_A 55 MDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI--IPVEKLVKGKFQDN-FEFIQWFKKFFD 123 (159)
T ss_dssp HHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTTCSHHH-HHHHHHHHHHHH
T ss_pred HHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcCCchhH-HHHHHHHHHHHH
Confidence 4789999998 886 3 56677999999999999999974 66666666664332 344555555443
No 23
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=95.21 E-value=0.008 Score=53.50 Aligned_cols=113 Identities=10% Similarity=0.107 Sum_probs=65.6
Q ss_pred eecCCCCc--ccCCC---------CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC
Q 031634 15 YKYELFAP--RKSSR---------SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83 (156)
Q Consensus 15 n~l~Pgsv--~Ki~~---------~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~ 83 (156)
+++.||++ ++++. .|+.+|||+.+|++++++|++-.. +++.|+++++ ...+.--|..|-|+-...-+
T Consensus 321 e~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~-i~~~DIvdg~-~~~~LgLlW~li~~~~~~~l 398 (513)
T 1rt8_A 321 DKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVG-IQGADITDGS-RTLTLALVWQMMRMNITKTL 398 (513)
T ss_dssp HHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeec-cchhhhhcCC-chhhHHHHHHHHHHHHHHHH
Confidence 45778876 45542 266779999999999999998877 9999999975 44444444445443321100
Q ss_pred CCCcccCCCccccCCcchhhhhhhhhhhcc--cccCCCC--CCCcccchhhhh
Q 031634 84 NVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ--RRFLSNA--NLNSDRVLTADL 132 (156)
Q Consensus 84 ~~P~lg~~~~~v~~pk~~~~~~R~~le~~~--~~~~~~~--~~n~~r~~~~~~ 132 (156)
. .+..-.. -..++++..+.++.++... ....+.+ +-+.++.+.+.+
T Consensus 399 ~--~l~~~~~-~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi 448 (513)
T 1rt8_A 399 H--SLSRGGK-TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVL 448 (513)
T ss_dssp T--C-------CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHH
T ss_pred H--hhccCCC-cCCHHHHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHH
Confidence 0 1110000 1124567777787776432 2233443 456666664433
No 24
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=92.79 E-value=0.035 Score=46.82 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=49.4
Q ss_pred eeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634 14 AYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS 80 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~ 80 (156)
++.|.|+.+++.+. .|+.+|||+.+|++++..|++-.. ....|++++ |...++--|..|-++-+-
T Consensus 110 le~L~~~~l~~~~~~~r~~kleNvn~aL~~lk~~gv~lv~-I~~~DIvdG-n~kliLgLlW~Li~~~~i 176 (296)
T 3f7p_A 110 LEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVN-IRNDDIADG-NPKLTLGLIWTIILHFQI 176 (296)
T ss_dssp HHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTT-CHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcccccCCcChhhhhhhHHHHHHHHHHhCccccC-CChhhhhcc-chHHHHHHHHHhhcccce
Confidence 35677777776543 467779999999999999987654 467899998 777777777777776543
No 25
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=87.25 E-value=0.23 Score=45.63 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=43.3
Q ss_pred eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHH
Q 031634 14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLS 75 (156)
Q Consensus 14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLg 75 (156)
++.|.|+.+++++. .++.+|||+.+|++++..|++-.. -.+.|++++ |...+.--|..|-
T Consensus 45 ~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~~~-i~~~di~~g-~~~~~l~l~w~l~ 107 (863)
T 1sjj_A 45 LEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVS-IGAEEIVDG-NVKMTLGMIWTII 107 (863)
T ss_dssp HHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCSHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCccCC-CChHHhhcC-CHHHHHHHHHHHH
Confidence 45678888887653 366679999999999999997654 567888888 4555444444443
No 26
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=79.56 E-value=0.7 Score=38.27 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=44.1
Q ss_pred eecCCCCc-ccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634 15 YKYELFAP-RKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 15 n~l~Pgsv-~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~ 79 (156)
+.|.|+.+ ++++. .++.+||++..|++++..|++-..+ .+.|++++ |...++--|..|-++-+
T Consensus 85 e~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~lvnI-~~~DIvdG-n~kliLgLlW~Li~~~~ 152 (272)
T 3hoc_A 85 EVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDG-NLKLILGLIWTLILHYS 152 (272)
T ss_dssp HHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSSC-CHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCccccc-ccchhhcC-CHHHHHHHHHHHHHHHh
Confidence 44666776 66643 2445799999999999999976543 57788887 45666666666666554
No 27
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=74.72 E-value=0.69 Score=34.51 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=33.6
Q ss_pred eeecCCCCcccC--CC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc
Q 031634 14 AYKYELFAPRKS--SR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK 61 (156)
Q Consensus 14 ~n~l~Pgsv~Ki--~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~ 61 (156)
.+.|.|++|..- .. ....++|....++.|+++|++. .-.+.|+.|.
T Consensus 47 l~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~~~--~l~pEDIve~ 98 (124)
T 1wjo_A 47 IDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARV--YALPEDLVEV 98 (124)
T ss_dssp HHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCCSC--CCCHHHHHHT
T ss_pred HHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCc--ccCHHHHhcC
Confidence 345677777322 11 1234599999999999999986 7789999987
No 28
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=57.22 E-value=1.9 Score=31.87 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=27.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCCCCcCcccccc
Q 031634 28 SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKK 62 (156)
Q Consensus 28 ~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~k 62 (156)
.++..||++.-|+++++.|+.-.. -.+.|++++.
T Consensus 79 r~~kieNv~~aL~~lk~~gi~l~~-I~~~DIvdGn 112 (131)
T 2vzc_A 79 FEQKVLNVSFAFELMQDGGLEKPK-PRPEDIVNCD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCS-SCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCC-CCHHHhhCCC
Confidence 466669999999999999987553 5788888875
No 29
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=55.20 E-value=6 Score=34.79 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.3
Q ss_pred eecCCCCcc--cCC-----CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHH
Q 031634 15 YKYELFAPR--KSS-----RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSL 74 (156)
Q Consensus 15 n~l~Pgsv~--Ki~-----~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aL 74 (156)
++|.|+++. +++ ..++.+||++..|+++++.|+.-.. -.+.|++++. ...++.-|..|
T Consensus 312 e~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k~~~v~l~~-I~~~dIvdg~-~kl~L~Liw~l 376 (506)
T 1pxy_A 312 DKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVN-VAGNDIVQGN-KKLILGLLWQL 376 (506)
T ss_dssp HHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCCS-CCHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHcCCccccccccCCccccHHHHHHHHHHHHHHHHHcCCcccC-CCHHHHhcCC-HHHHHHHHHHH
Confidence 456677662 332 2466779999999999999986543 5778888864 34444434444
No 30
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=47.82 E-value=5.9 Score=32.59 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.9
Q ss_pred CcccHHHHHHHHHHcCCCCCCC
Q 031634 31 PYSNVDSFLKICKILGLTGIDL 52 (156)
Q Consensus 31 ~~ENIs~FL~ack~lGV~~~dL 52 (156)
|.|.+..|+++|+.+||...|+
T Consensus 250 Q~~~L~~Fy~~ck~~gi~~~~~ 271 (271)
T 3zyl_A 250 RMTRISEFLKVAEQVGIDRGDI 271 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCcCcCCC
Confidence 5589999999999999987663
No 31
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=45.38 E-value=20 Score=28.47 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 32 YSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
.+.+...+++|+.+|.+-.-..-...-.......+++..|..++..|...|+.
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 107 MEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 46788889999999988765542221123446788999999999999999987
No 32
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.19 E-value=17 Score=26.07 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=36.1
Q ss_pred eecCCCCcccCCC-CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc--cChHHHHHHHHHH
Q 031634 15 YKYELFAPRKSSR-SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK--KNTRKVCMCIRSL 74 (156)
Q Consensus 15 n~l~Pgsv~Ki~~-~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~--kN~~qVv~cL~aL 74 (156)
+.+.|+.|.--.. .--..+|...=++.++++|++. +..+.|+.+. -|-..|+.-+..+
T Consensus 48 ~~~~P~lid~~~l~~~~~~~n~~~af~~a~~LGi~~--ll~peDi~~~~~pD~ksvmtYvs~l 108 (119)
T 2d89_A 48 HHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISR--LLEPSDMVLLAIPDKLTVMTYLYQI 108 (119)
T ss_dssp HHHCTTTSCGGGCCTTCSHHHHHHHHHHHHHHTCCC--CSCHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHCcCcCChhhhcccCHHHHHHHHHHHHHHhCCCc--ccCHHHHhccCCCcHHHHHHHHHHH
Confidence 3456666532111 2335588888888889999986 6788998764 3555554444433
No 33
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=35.99 E-value=57 Score=21.75 Aligned_cols=67 Identities=7% Similarity=0.031 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccc-----------cccChHHHHHHHHHHHHHHHhcCCCCCcccCCCccccCCcch
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVV-----------EKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDN 101 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLy-----------E~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~~~~v~~pk~~ 101 (156)
..|..|++||...|+.+..-....|+- ...-+...+.+|.++=+.+...|+-. .++...+..|+..
T Consensus 34 ~~l~~f~~~l~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~lr~f~~~l~~~g~i~---~nP~~~v~~pk~~ 110 (117)
T 3nrw_A 34 YRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVD---EDLPEKVHVPTIL 110 (117)
T ss_dssp HHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSSC---TTSGGGCCCC---
T ss_pred HHHHHHHHHHHHcCCCChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCcc---cCHHHHccCCchh
Confidence 467788888888776443333333332 11234566777888888888877632 1122235556644
Q ss_pred h
Q 031634 102 V 102 (156)
Q Consensus 102 ~ 102 (156)
+
T Consensus 111 ~ 111 (117)
T 3nrw_A 111 E 111 (117)
T ss_dssp -
T ss_pred c
Confidence 3
No 34
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=35.56 E-value=16 Score=29.05 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=35.7
Q ss_pred eecCCCCcccCCC--CCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHHH
Q 031634 15 YKYELFAPRKSSR--SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCIR 72 (156)
Q Consensus 15 n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL~ 72 (156)
+.+.|+.++.... .-...+|...-++.|++ +|+| .+-.+.|+.++.--.+.+.+..
T Consensus 179 ~~~~P~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~--~~l~peDi~~~~~d~ksi~tyv 237 (245)
T 2wa7_A 179 DSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVP--QVITPEEIIHPDVDEHSVMTYL 237 (245)
T ss_dssp HHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCC--CSSCHHHHTCTTCCHHHHHHHH
T ss_pred HHHCccccccccccCcccHHHHHHHHHHHHHHhCCCC--ccCCHHHhccCCCcHHHHHHHH
Confidence 3456777643221 23355888888999987 9998 4678889988533334444443
No 35
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=35.37 E-value=31 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHcCCCCCCC--CCcCccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDL--FSPSDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dL--FqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+...+++|+.+|.+-.-. ....+-.......+++..|..++..|...|+.
T Consensus 84 ~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 137 (281)
T 3u0h_A 84 SLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR 137 (281)
T ss_dssp HTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE
Confidence 45667889999999987652 22122222346778899999999999998874
No 36
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=34.33 E-value=23 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHH
Q 031634 31 PYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCI 71 (156)
Q Consensus 31 ~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL 71 (156)
..+|...=++.+++ +|+|. +..+.|+.+.-|-..|+.-+
T Consensus 63 ~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~~d~ksv~tYv 102 (116)
T 1wyl_A 63 ALEATAWALKVAENELGITP--VVSAQAVVAGSDPLGLIAYL 102 (116)
T ss_dssp HHHHHHHHHHHHHHTTCCCC--CSCHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcc--ccCHHHHhcCCchhHHHHHH
Confidence 45888888888886 99985 67889988765554444333
No 37
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=34.20 E-value=31 Score=27.39 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+...++.|+.+|.+-.-..-...-.......+++..|..++..|...|+.
T Consensus 114 ~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 165 (305)
T 3obe_A 114 EFWKKATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGIL 165 (305)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 5677888889999987665432111112345778889999999999988864
No 38
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=32.60 E-value=57 Score=23.64 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=40.4
Q ss_pred eecCCCCcccCCC-CCCCcccHHHHHHHHHH-cCCCCCCCCCcCcccccc--ChHHHHHHHHHHHHHHHhcCC
Q 031634 15 YKYELFAPRKSSR-SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKK--NTRKVCMCIRSLSKKARSRQL 83 (156)
Q Consensus 15 n~l~Pgsv~Ki~~-~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~k--N~~qVv~cL~aLgr~A~~~g~ 83 (156)
+.+.|+.|.--.. .-...+|...-++.+++ +|+|. +..+.|+.+.. |-..|+.-+..+=......|+
T Consensus 46 h~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~--lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~~~~ 116 (128)
T 2d87_A 46 HNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQ--LLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGL 116 (128)
T ss_dssp HHHCTTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCc--ccCHHHHhccCCccHHHHHHHHHHHHHHHhhccc
Confidence 3455665532111 23345888888998986 89985 47888887543 455665555555555444443
No 39
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=30.70 E-value=28 Score=27.88 Aligned_cols=60 Identities=8% Similarity=0.178 Sum_probs=38.0
Q ss_pred eecCCCCcccCCC-CCCCcccHHHHHHHHHH-cCCCCCCCCCcCcccccc--ChHHHHHHHHHHHH
Q 031634 15 YKYELFAPRKSSR-SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKK--NTRKVCMCIRSLSK 76 (156)
Q Consensus 15 n~l~Pgsv~Ki~~-~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~k--N~~qVv~cL~aLgr 76 (156)
+.+.|+.+.--.. .--..+|...-++.|++ +|+|. +..+.|+.+.. |-..|+.-+..|=.
T Consensus 179 ~~~~P~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~--~l~peDiv~~~~pD~k~imtyva~l~~ 242 (254)
T 1wku_A 179 HRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPK--MLDAEDIVNTPKPDEKAIMTYVSCFYH 242 (254)
T ss_dssp HHHCTTSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCC--CSCHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCcccccccCcCCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCCCcHHHHHHHHHHHHH
Confidence 3456666632111 12345889888999986 99985 78999998764 44555554444433
No 40
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.07 E-value=36 Score=20.84 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCc
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSD 57 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~D 57 (156)
-.+....+.|+.+||+..++|...|
T Consensus 48 ~~~~~l~~ia~~l~v~~~~l~~~~~ 72 (73)
T 3omt_A 48 PSLETLFDIAEALNVDVRELIVSTK 72 (73)
T ss_dssp CCHHHHHHHHHHHTSCGGGGBCCCC
T ss_pred CCHHHHHHHHHHHCcCHHHHhcCCC
Confidence 4788899999999999998887654
No 41
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=25.96 E-value=44 Score=26.79 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHH
Q 031634 31 PYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKV 67 (156)
Q Consensus 31 ~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qV 67 (156)
..+|...-++.|+++|++. +-.+.|+.+. |...+
T Consensus 233 ~~~n~~~a~~~A~~lGi~~--~l~peDi~~~-~~k~i 266 (275)
T 1aoa_A 233 DLKRAESMLQQADKLGCRQ--FVTPADVVSG-NPKLN 266 (275)
T ss_dssp HHHHHHHHHHHHTTTTCCC--SCCHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--cCCHHHcCCC-ChhHH
Confidence 3488999999999999976 6788899875 54433
No 42
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=25.85 E-value=59 Score=24.88 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHcCCCCCCCCC---cCccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 32 YSNVDSFLKICKILGLTGIDLFS---PSDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 32 ~ENIs~FL~ack~lGV~~~dLFq---T~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
.+.+...+++|+.+|.+-.-++- +.+ ......+++..|..++..|...|+.
T Consensus 101 ~~~~~~~i~~a~~lG~~~v~~~~G~~~~~--~~~~~~~~~~~l~~l~~~a~~~Gv~ 154 (290)
T 3tva_A 101 VAEMKEISDFASWVGCPAIGLHIGFVPES--SSPDYSELVRVTQDLLTHAANHGQA 154 (290)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCCCT--TSHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCccc--chHHHHHHHHHHHHHHHHHHHcCCE
Confidence 36778888999999988776542 233 3446788899999999999988864
No 43
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=24.09 E-value=93 Score=23.29 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCccccccChHHH-HHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKV-CMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qV-v~cL~aLgr~A~~~g~~ 84 (156)
+.+...+++|+.+|.+-.-++-..+ ......++ +..|..++..|...|+.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~--~~~~~~~~~~~~l~~l~~~a~~~gv~ 135 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLND--GTIVPPEVTVEAIKRLSDLFARYDIQ 135 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCS--SBCCCHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCC--chhHHHHHHHHHHHHHHHHHHHcCCE
Confidence 5677788888999987665543322 12566788 99999999999988764
No 44
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=24.02 E-value=1.1e+02 Score=21.90 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=35.4
Q ss_pred eecCCCCcccCCC-CCCCcccHHHHHHHHH-HcCCCCCCCCCcCccccc-cChHHHHHHHHHHHHHH
Q 031634 15 YKYELFAPRKSSR-SYMPYSNVDSFLKICK-ILGLTGIDLFSPSDVVEK-KNTRKVCMCIRSLSKKA 78 (156)
Q Consensus 15 n~l~Pgsv~Ki~~-~f~~~ENIs~FL~ack-~lGV~~~dLFqT~DLyE~-kN~~qVv~cL~aLgr~A 78 (156)
+.+.|+.|.--.. .--..+|...=++.++ ++|+|. +..+.|+... -|-..|+.-+..+=...
T Consensus 46 h~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~--ll~~eDv~~~~pDeksimtYvs~l~~~~ 110 (127)
T 1wyq_A 46 HKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTK--LLDPEDVNVDQPDEKSIITYVATYYHYF 110 (127)
T ss_dssp HHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCC--CSCTTTSCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCc--ccCHHHhccCCCcHHHHHHHHHHHHHHh
Confidence 3455665532111 2335588888888887 699985 4578887543 34444444444443333
No 45
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=22.83 E-value=76 Score=24.15 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCc--CccccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSP--SDVVEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT--~DLyE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+..-+++|+.+|.+-.-++-. .+.-......+++..|..++..|...|+.
T Consensus 93 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 146 (269)
T 3ngf_A 93 DNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT 146 (269)
T ss_dssp HHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 66778888999999887765433 11112335778899999999999988864
No 46
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=22.73 E-value=33 Score=28.05 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred eecCCCCcccCCC--CCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccc
Q 031634 15 YKYELFAPRKSSR--SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEK 61 (156)
Q Consensus 15 n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~ 61 (156)
+.+.|+.++.... .-...+|...-++.+++ +|+|. +-.+.|+.+.
T Consensus 206 ~~~~P~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~--ll~peDiv~~ 253 (272)
T 3hoc_A 206 DSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQ--VITPEEIVDP 253 (272)
T ss_dssp HHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCC--SSCHHHHTCT
T ss_pred HHhCcccccchhhcCccCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence 4567777743221 23455899999999987 99984 7788888874
No 47
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=21.97 E-value=81 Score=23.99 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCcCcc---ccccChHHHHHHHHHHHHHHHhcCCC
Q 031634 33 SNVDSFLKICKILGLTGIDLFSPSDV---VEKKNTRKVCMCIRSLSKKARSRQLN 84 (156)
Q Consensus 33 ENIs~FL~ack~lGV~~~dLFqT~DL---yE~kN~~qVv~cL~aLgr~A~~~g~~ 84 (156)
+.+...+++|..+|.+-.-++-..+- .......+++..|..++..|...|+.
T Consensus 84 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 138 (286)
T 3dx5_A 84 EKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY 138 (286)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 66777888899999988766543321 22345688899999999999998874
No 48
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=21.12 E-value=70 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.1
Q ss_pred ccccccChHHHHHHHHHHHHHHH
Q 031634 57 DVVEKKNTRKVCMCIRSLSKKAR 79 (156)
Q Consensus 57 DLyE~kN~~qVv~cL~aLgr~A~ 79 (156)
|--|+.|+..||.+|.-|+-.|.
T Consensus 52 dkEegGDvksvCltLfLlalRa~ 74 (96)
T 3gna_A 52 DKEEGGDVKAVCLTLFLLALRAR 74 (96)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHT
T ss_pred hHhhCCcHHHHHHHHHHHHHHcc
Confidence 44578899999999999987764
Done!