BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031636
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UPS|A Chain A, Crystal Structure Of Iojap-Like Protein From Zymomonas
Mobilis
Length = 136
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D +A ++ IP+ K DY VIA+GRS+ V AQ + + K A +
Sbjct: 32 DDQALEIATIPLAGKSSIADYXVIASGRSSRQVTAXAQKLADRIK-------AATGYVSK 84
Query: 87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
++G WV++D+G +I+H R++YNLE W
Sbjct: 85 IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERXW 120
>pdb|2O5A|A Chain A, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
pdb|2O5A|B Chain B, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
Length = 125
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 22 VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
VN D KA+ V + D+ +I G S V QAI ++ K+ +E G +
Sbjct: 11 VNAVDDKKAEQVVALNXKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQGIE- 65
Query: 82 MMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
+ ++G + +WV+ID G V+VH ++ RAYYNLE LW P+
Sbjct: 66 --IKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109
>pdb|2ID1|A Chain A, X-Ray Crystal Structure Of Protein Cv0518 From
Chromobacterium Violaceum, Northeast Structural Genomics
Consortium Target Cvr5.
pdb|2ID1|B Chain B, X-Ray Crystal Structure Of Protein Cv0518 From
Chromobacterium Violaceum, Northeast Structural Genomics
Consortium Target Cvr5
Length = 130
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+K D+ + + ++ATG S VK +A ++ K K+ ++ +
Sbjct: 16 DIKGKDIIELDTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAGVDIVGSE----- 70
Query: 87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE-PS 127
G ++G+WV++D+G V+VH R YY++E LW + PS
Sbjct: 71 --GHESGEWVLVDAGDVVVHVXLPAVRDYYDIEALWGGQKPS 110
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 3 GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGR 54
G +E T A + P+ V NP A+++ +P G DW + R
Sbjct: 389 GTAREVGTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAVEQDR 440
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 67 IYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGK 102
+ +A +R RE GA + LP+ +G G +D+G+
Sbjct: 72 LARAFERAREQGAPERWLPAFEGGFAGVVATLDTGR 107
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 67 IYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEP 126
+Y + + G Q MLP ++ Q G I+D + + NA ++Y L D
Sbjct: 385 LYMSGSAEFSNGELQAMLPVLKQQAKGPIYIMDLRQETHGVFNGNAVSWYGLRDWGNLGK 444
Query: 127 SKSATVQD 134
+K+ ++D
Sbjct: 445 NKAEVLKD 452
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 104 IVHALDENARAYYNLEDLWTSEPSKSATVQDLQKAFV 140
V ALDEN ++ + LW SE ++ QD+ + +
Sbjct: 1012 FVPALDENFEYWFKKDSLWQSEDIEAVYGQDVGRTCI 1048
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,472,091
Number of Sequences: 62578
Number of extensions: 167379
Number of successful extensions: 344
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 14
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)