BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031636
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana
GN=At1g67620 PE=2 SV=1
Length = 184
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 111/156 (71%), Gaps = 10/156 (6%)
Query: 3 GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNI 62
G++ SE L ++ V D+KAD+V VIP C W D+ VIATGRS WH++NI
Sbjct: 37 GISNVSEIL-----TLPEVEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNI 91
Query: 63 AQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
AQA++Y+AKQ+Q+ GAK +MLPSVQG ++ KW++ID GK +VHALDE AR Y+NLE LW
Sbjct: 92 AQALVYRAKQKQK--GAKHVMLPSVQGYNS-KWIVIDYGKFVVHALDEKARGYFNLESLW 148
Query: 123 TSEPSKSATV-QDLQKAFVKVRRKNNSK-KPVEKSA 156
++E S + T QDLQ FVKVR KNNSK KP + S+
Sbjct: 149 SAESSGTDTSDQDLQNVFVKVRPKNNSKRKPAKVSS 184
>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3
SV=1
Length = 105
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
+LP V+G+++ W+++D G VIVH + E +R Y LE LW+
Sbjct: 64 --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12)
GN=rsfS PE=1 SV=1
Length = 105
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
+LP V+G+++ W+++D G VIVH + E +R Y LE LW+
Sbjct: 64 --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1
Length = 105
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
+LP V+G+++ W+++D G VIVH + E +R Y LE LW+
Sbjct: 64 --LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1
Length = 133
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D +A ++ IP+ K DYMVIA+GRS+ V +AQ + + K A +
Sbjct: 29 DDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK-------AATGYVSK 81
Query: 87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
++G WV++D+G +I+H R++YNLE +W
Sbjct: 82 IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMW 117
>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo
sapiens GN=MALSU1 PE=1 SV=1
Length = 234
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 23 NPTFDL----------KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAII--YKA 70
P FD+ A D+ VI V + +TDY VI +G ST H+ +A ++ YK
Sbjct: 89 GPKFDIDMMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKH 148
Query: 71 KQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 123
+ +R+ K ++G+DT W+ +D G +++H + R Y LE LWT
Sbjct: 149 LKCKRDPHVK------IEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLWT 195
>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rsfS PE=1 SV=1
Length = 117
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 22 VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
VN D KA+ V + + D+ +I G S V QAI ++ K+ +E G +
Sbjct: 11 VNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQGIE- 65
Query: 82 MMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
+ ++G + +WV+ID G V+VH ++ RAYYNLE LW P+
Sbjct: 66 --IKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109
>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1
SV=1
Length = 117
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 14 KRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73
++ + VV + +A+D+ + V + TDY+VI + ++ + IA I +++
Sbjct: 3 EKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANI----REK 58
Query: 74 QREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPS 127
+ G K V+G G WV++D G V+VH E RA+YNLE LW S
Sbjct: 59 VAQAGFKG---SHVEGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANS 109
>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1
Length = 102
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 17 SMTSVVNPTFD-LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQR 75
++ + T D LK D+ V K TD M+I TG S+ V +A +I + K+
Sbjct: 2 ALVEFLMETLDGLKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNLITECKKAGF 61
Query: 76 EVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
E ++ G++T W+++D G+ IVH + +AR Y LE LW
Sbjct: 62 ETFGEE-------GKNTADWIVVDLGQAIVHIMQRDAREMYQLEKLW 101
>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus
musculus GN=Malsu1 PE=2 SV=1
Length = 228
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 12 ARKRPSMTSVVNPTFDL----------KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKN 61
AR +P + FD+ A D+ VI V + +TDY VI +G ST H+
Sbjct: 72 ARLQPGPADHIGAKFDIDMLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHA 131
Query: 62 IAQAII--YKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLE 119
+ ++ YK + + + K ++G+D W+ +D G +++H + R Y LE
Sbjct: 132 MVHYLVKMYKHLKCRSDPYVK------IEGKDADDWLCVDFGSMVIHLMLPETRETYELE 185
Query: 120 DLWT 123
LWT
Sbjct: 186 KLWT 189
>sp|O83720|IOJAP_TREPA Ribosomal silencing factor RsfS OS=Treponema pallidum (strain
Nichols) GN=rsfS PE=1 SV=1
Length = 111
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 17 SMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKN---IAQAIIYKAKQR 73
+ ++V D +A+DV V V +C W D+ V+AT H + QA A+
Sbjct: 6 AASAVAEALCDARAEDVCVFDVSARCGWADFAVVATVPGLLHGTHRLVCEQA----ARFG 61
Query: 74 QREVGAKQMMLPSVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
REV K+ L Q W ++D G ++VH + ARA+Y+L+ LW
Sbjct: 62 LREVHRKKRGLCEEQ------WRVLDFGSILVHLMSAQARAFYDLDRLW 104
>sp|Q7P0P8|IOJAP_CHRVO Ribosomal silencing factor RsfS OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=rsfS PE=1 SV=1
Length = 122
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+K D+ + + M++ATG S VK +A ++ K K+ ++ +
Sbjct: 16 DIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSE----- 70
Query: 87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSE-PS 127
G ++G+WV++D+G V+VH + R YY++E LW + PS
Sbjct: 71 --GHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPS 110
>sp|Q41822|IOJAP_MAIZE Protein Iojap, chloroplast OS=Zea mays GN=Ij PE=1 SV=1
Length = 228
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
++KA D++V+ V WT + +I T S + I+ + R++G KQ
Sbjct: 126 EIKATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISS--------KMRDIGEKQFS--K 175
Query: 87 VQGQDT--GKWVIIDSGKVIVHALDENARAYYNLEDLW 122
V DT W ++D G V+VH RA+YNLE+ +
Sbjct: 176 VASGDTKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFY 213
>sp|Q9LDY9|IOJAC_ARATH Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2
SV=1
Length = 238
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+KA D+KV+ V WT + +IAT S + I R R++ K+ +
Sbjct: 133 DVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGS--------RMRDLAEKKYGKVA 184
Query: 87 VQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLW 122
W ++D G V++H R +YNLED +
Sbjct: 185 NGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFY 220
>sp|P73658|IOJAP_SYNY3 Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rsfS PE=1 SV=1
Length = 154
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 29 KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS-V 87
KA D+ ++ V + DY VI TG S V+ IA I ++Q E+ Q LP+
Sbjct: 42 KAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNI-----EKQVELVHGQ--LPTHT 94
Query: 88 QGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWTSEPSKSATVQDLQKA 138
+G WV+ D G V+VH R +Y LE W ++ T+ D+ A
Sbjct: 95 EGNSESIWVLQDFGDVLVHTFMPEEREFYKLEAFWGH--AQEQTLADIATA 143
>sp|P54457|IOJAP_BACSU Ribosomal silencing factor RsfS OS=Bacillus subtilis (strain 168)
GN=rsfS PE=3 SV=1
Length = 118
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 45 TDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSGKVI 104
DY +I G S V+ IA+ I K + E G + + ++G D +WV++D G V+
Sbjct: 34 ADYFLICHGNSDKQVQAIAREI----KDQADENG---IQVKKMEGFDEARWVLVDLGDVV 86
Query: 105 VHALDENARAYYNLEDLWTSEP 126
VH ++ R+YYNLE LW P
Sbjct: 87 VHVFHKDERSYYNLEKLWGDAP 108
>sp|C5DZB2|ATP25_ZYGRC ATPase synthesis protein 25, mitochondrial OS=Zygosaccharomyces
rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC
568 / NRRL Y-229) GN=ATP25 PE=3 SV=1
Length = 583
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 22/103 (21%)
Query: 45 TDYMVIATGRSTWH-----------VKNIAQAIIY--------KAKQRQREVGAK-QMML 84
+D+MVIAT RS H +K +++ Y + K+RQR + K ++
Sbjct: 118 SDFMVIATARSPKHCQTSFDKLNSLIKQEYESVAYVEGQFNAREEKKRQRRLARKPKLSS 177
Query: 85 PSVQGQDTGKWVIIDS--GKVIVHALDENARAYYNLEDLWTSE 125
S T W +ID K+ V+ L EN R NLE+L+ E
Sbjct: 178 NSTSNVPTESWFLIDCKVDKIFVNILTENRRQEINLEELYAPE 220
>sp|C4QZ25|ATP25_PICPG ATPase synthesis protein 25, mitochondrial OS=Komagataella pastoris
(strain GS115 / ATCC 20864) GN=ATP25 PE=3 SV=1
Length = 634
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 40/146 (27%)
Query: 27 DLKADDVKVIPVG----EKCDWTD----YMVIATGRSTWHVKN----------------- 61
DL +D+KV + E+ D + YMVI TG+S H+
Sbjct: 86 DLGIEDIKVFDLSMNEEEEVDGSKFLGKYMVIGTGKSNKHLAKAGTEMMNFLKHEYGTPS 145
Query: 62 ------IAQAIIYKAKQRQREVGAKQMMLPSVQGQDTG----KWVIIDSG--KVIVHALD 109
+ ++ + ++R + G K L S Q D G W++ID+ + VH L
Sbjct: 146 SNIEGLVKDTLLIRQQKRLKRKGGK---LSSPQSNDFGVSANSWIMIDTNIDDIYVHFLT 202
Query: 110 ENARAYYNLEDLWTSEPSKSATVQDL 135
E R NLE LW S + Q++
Sbjct: 203 EKRRKELNLEYLWCSAEDRPLYHQEV 228
>sp|Q6BXN8|ATP25_DEBHA ATPase synthesis protein 25, mitochondrial OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=ATP25 PE=3 SV=2
Length = 648
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 47/139 (33%)
Query: 45 TDYMVIATGRSTWHVKNIAQAIIYKAKQRQRE-VGAKQMMLPSVQG-------------- 89
TDYM+I TG+S H IYKA R + ++P ++G
Sbjct: 145 TDYMIICTGKSEKH--------IYKASNELRTYIKHNYNLIPKIEGMASNSKTPAARRRM 196
Query: 90 ------------QDTGK----WVIIDSG--KVIVHALDENARAYYNLEDLWTSE------ 125
D G+ WV+ D+ +H L ++ R NLE LW E
Sbjct: 197 LRRARKGPLATDNDYGRTPNSWVMCDTAVNNTCIHILTDSRRDELNLETLWCREEDIEKY 256
Query: 126 PSKSATVQDLQKAFVKVRR 144
+ + ++ F+ +RR
Sbjct: 257 STPESATEESDDIFIGIRR 275
>sp|C4XVT2|ATP25_CLAL4 ATPase synthesis protein 25, mitochondrial OS=Clavispora lusitaniae
(strain ATCC 42720) GN=ATP25 PE=3 SV=1
Length = 600
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 39/108 (36%)
Query: 46 DYMVIATGRSTWHVKNIAQAIIYKAKQRQR-EVGAKQMMLPSVQG--------------- 89
D++V+ATG+S H IYKA R + K +PS++G
Sbjct: 129 DFIVVATGKSEKH--------IYKAANELRTHLKHKYNAMPSIEGMVSSAITPSMRRRLL 180
Query: 90 -----------QDTGK----WVIIDSGKVIVHALDENARAYYNLEDLW 122
D GK WVI + +H L R NLE LW
Sbjct: 181 RRARKGPLATDNDYGKAANSWVICHHDGIDMHMLTAPRREELNLESLW 228
>sp|P87020|PRA1_CANAL pH-regulated antigen PRA1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PRA1 PE=2 SV=2
Length = 299
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 23 NPT-FDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
+PT +D +AD VK P+ C+ T Y ++TG AQ + A+ G+K
Sbjct: 27 SPTGYDWRADWVKGFPIDSSCNATQYNQLSTGLQE------AQLLAEHARDHTLRFGSKS 80
Query: 82 MMLPSVQGQDTGKWVIIDSGKVIVHA 107
G DT ++ + +V A
Sbjct: 81 PFFRKYFGNDTASAEVVGHFENVVGA 106
>sp|Q5UR19|YR656_MIMIV Uncharacterized protein R656 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R656 PE=4 SV=1
Length = 492
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 37 PVGEKCDWTDYMV-IATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKW 95
P GE DW DY V + + ++ + + K +R +G + ++G D +
Sbjct: 75 PEGETVDWIDYGVQLFMNTTQLNLTGVGSWSLATDKFAERFIGPNATL--PLEGNDINLY 132
Query: 96 VIIDSGKVIVHALDENAR-----AYYNLEDL--WTSEPSKSATV 132
V +++G++++ ++E A Y+ L + WTS+ + T+
Sbjct: 133 VNMETGELVIPNVNETALNNALGVYFYLLSMYPWTSDGKYTGTI 176
>sp|B9IRL0|LUTA2_BACCQ Lactate utilization protein A 2 OS=Bacillus cereus (strain Q1)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNNWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|Q638X2|LUTA2_BACCZ Lactate utilization protein A 2 OS=Bacillus cereus (strain ZK /
E33L) GN=lutA2 PE=3 SV=1
Length = 242
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C1EKT5|LUTA2_BACC3 Lactate utilization protein A 2 OS=Bacillus cereus (strain 03BB102)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|B7JF51|LUTA2_BACC0 Lactate utilization protein A 2 OS=Bacillus cereus (strain AH820)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|Q81ND5|LUTA2_BACAN Lactate utilization protein A 2 OS=Bacillus anthracis GN=lutA2 PE=3
SV=1
Length = 242
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C3P1X2|LUTA2_BACAA Lactate utilization protein A 2 OS=Bacillus anthracis (strain
A0248) GN=lutA2 PE=3 SV=1
Length = 242
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C3LCL5|LUTA1_BACAC Lactate utilization protein A 1 OS=Bacillus anthracis (strain CDC
684 / NRRL 3495) GN=lutA1 PE=3 SV=1
Length = 242
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,066,696
Number of Sequences: 539616
Number of extensions: 2143430
Number of successful extensions: 4114
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4077
Number of HSP's gapped (non-prelim): 33
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)