Query 031640
Match_columns 156
No_of_seqs 139 out of 1123
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 8.2E-28 1.8E-32 174.5 13.8 106 43-155 30-136 (142)
2 PRK10743 heat shock protein Ib 100.0 6.5E-28 1.4E-32 174.3 13.2 102 46-154 35-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 2.5E-27 5.5E-32 173.1 14.4 108 44-154 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.1E-26 2.4E-31 157.3 12.2 92 47-138 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.8E-24 3.9E-29 148.5 14.1 102 49-154 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.4E-24 3E-29 147.1 11.8 90 47-138 2-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.6E-24 1E-28 144.1 12.7 89 46-138 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 4.1E-23 8.9E-28 138.3 11.2 82 49-138 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.9E-22 4.2E-27 134.3 11.1 82 49-138 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2.6E-22 5.6E-27 133.9 11.0 82 50-139 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 2.8E-22 6.1E-27 132.7 9.5 79 49-138 2-81 (81)
12 cd06481 ACD_HspB9_like Alpha c 99.9 9.2E-22 2E-26 132.1 10.6 83 52-138 4-87 (87)
13 cd06475 ACD_HspB1_like Alpha c 99.9 1.3E-21 2.8E-26 131.1 10.8 82 48-137 3-85 (86)
14 cd06476 ACD_HspB2_like Alpha c 99.9 2E-21 4.2E-26 129.4 10.9 81 50-138 2-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 9.1E-21 2E-25 125.8 11.5 88 49-138 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 8.3E-21 1.8E-25 127.2 10.5 80 53-137 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.3E-20 2.9E-25 125.2 10.8 79 51-137 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 2.5E-20 5.5E-25 123.9 9.2 77 54-138 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 7.7E-19 1.7E-23 134.1 7.2 112 42-155 81-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 7.4E-18 1.6E-22 113.7 10.1 81 50-138 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 1.9E-16 4E-21 118.6 12.1 100 46-155 63-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2.3E-14 5E-19 91.9 10.0 80 50-138 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1E-11 2.2E-16 80.9 9.2 71 50-141 1-71 (78)
24 cd06463 p23_like Proteins cont 99.0 2.9E-09 6.3E-14 69.2 9.5 75 51-141 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 2.6E-09 5.6E-14 79.7 10.1 81 43-143 89-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.2E-08 7E-13 65.0 8.2 77 49-141 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.7E-06 3.8E-11 55.5 11.3 77 46-138 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 1.5E-05 3.3E-10 55.0 10.2 78 46-140 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.2 2.2E-05 4.7E-10 51.7 9.0 78 49-142 1-78 (84)
30 PF08190 PIH1: pre-RNA process 98.1 1.9E-05 4.2E-10 64.1 8.8 65 54-137 260-327 (328)
31 cd06488 p23_melusin_like p23_l 98.0 0.00014 3E-09 48.4 10.2 81 47-143 2-82 (87)
32 cd06468 p23_CacyBP p23_like do 97.9 0.00021 4.5E-09 47.7 10.1 79 47-141 3-85 (92)
33 cd06467 p23_NUDC_like p23_like 97.9 0.00015 3.4E-09 47.4 9.0 75 48-141 1-77 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00047 1E-08 45.5 9.5 76 48-142 1-78 (85)
35 cd00237 p23 p23 binds heat sho 97.6 0.0022 4.7E-08 44.4 10.8 78 46-141 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.3 0.0034 7.4E-08 42.4 9.1 78 45-142 5-84 (93)
37 PLN03088 SGT1, suppressor of 97.1 0.0046 1E-07 51.2 9.4 81 45-141 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.9 0.0058 1.3E-07 46.0 7.3 81 45-141 3-83 (196)
39 cd06490 p23_NCB5OR p23_like do 96.7 0.057 1.2E-06 35.8 10.4 78 48-143 1-82 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.0 0.1 2.2E-06 34.7 8.5 74 49-141 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.8 0.59 1.3E-05 32.0 9.2 80 45-140 4-86 (102)
42 PF13349 DUF4097: Domain of un 88.4 7.4 0.00016 27.9 9.3 82 46-135 66-147 (166)
43 KOG3158 HSP90 co-chaperone p23 88.4 2.6 5.6E-05 31.7 6.7 80 43-140 5-84 (180)
44 KOG1667 Zn2+-binding protein M 85.1 6.7 0.00015 31.4 7.7 86 44-144 213-298 (320)
45 cd06482 ACD_HspB10 Alpha cryst 85.1 2.3 5E-05 28.2 4.5 34 107-141 9-42 (87)
46 PF14913 DPCD: DPCD protein fa 81.5 16 0.00034 27.9 8.2 79 43-140 84-170 (194)
47 COG5091 SGT1 Suppressor of G2 80.2 0.87 1.9E-05 36.9 1.1 83 44-141 175-257 (368)
48 cd06470 ACD_IbpA-B_like Alpha- 79.8 5.2 0.00011 26.3 4.7 35 107-142 12-46 (90)
49 KOG2265 Nuclear distribution p 79.8 19 0.00041 27.1 8.0 79 44-141 17-97 (179)
50 PF08308 PEGA: PEGA domain; I 79.3 9.3 0.0002 23.6 5.6 41 47-87 26-67 (71)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 77.6 6.8 0.00015 25.4 4.7 32 107-139 8-39 (83)
52 cd06476 ACD_HspB2_like Alpha c 76.6 6.5 0.00014 25.6 4.4 33 107-140 8-40 (83)
53 cd06471 ACD_LpsHSP_like Group 76.4 4.6 0.0001 26.5 3.7 30 55-85 62-91 (93)
54 cd06497 ACD_alphaA-crystallin_ 76.4 7.3 0.00016 25.5 4.6 33 107-140 11-43 (86)
55 cd06477 ACD_HspB3_Like Alpha c 75.7 7.9 0.00017 25.4 4.6 34 107-141 8-41 (83)
56 cd06464 ACD_sHsps-like Alpha-c 73.8 8 0.00017 24.4 4.3 31 54-85 55-86 (88)
57 cd06479 ACD_HspB7_like Alpha c 73.8 9.7 0.00021 24.8 4.6 33 107-140 9-41 (81)
58 PRK10743 heat shock protein Ib 73.6 8.8 0.00019 27.6 4.8 29 112-141 51-79 (137)
59 cd06526 metazoan_ACD Alpha-cry 73.4 8.6 0.00019 24.7 4.3 34 107-141 8-41 (83)
60 cd06475 ACD_HspB1_like Alpha c 70.6 14 0.0003 24.2 4.9 33 107-140 11-43 (86)
61 cd06481 ACD_HspB9_like Alpha c 70.6 12 0.00025 24.6 4.5 34 107-141 8-41 (87)
62 PRK05518 rpl6p 50S ribosomal p 69.9 27 0.00058 26.3 6.8 46 67-137 12-57 (180)
63 cd06498 ACD_alphaB-crystallin_ 68.7 14 0.00031 24.0 4.6 33 107-140 8-40 (84)
64 PF12992 DUF3876: Domain of un 68.3 27 0.00059 23.6 5.9 41 43-84 23-68 (95)
65 TIGR03654 L6_bact ribosomal pr 68.2 29 0.00063 25.9 6.7 44 68-137 11-54 (175)
66 cd06472 ACD_ScHsp26_like Alpha 67.8 12 0.00026 24.5 4.1 31 54-85 59-90 (92)
67 TIGR03653 arch_L6P archaeal ri 66.9 37 0.00081 25.3 7.0 45 68-137 7-51 (170)
68 cd06480 ACD_HspB8_like Alpha-c 66.8 14 0.00031 24.7 4.3 29 56-85 59-89 (91)
69 PRK11597 heat shock chaperone 66.7 14 0.00031 26.7 4.6 32 108-140 45-76 (142)
70 PF00011 HSP20: Hsp20/alpha cr 65.9 20 0.00043 23.6 5.0 32 107-139 8-39 (102)
71 PRK05498 rplF 50S ribosomal pr 65.3 32 0.00069 25.7 6.5 44 68-137 12-55 (178)
72 PF01954 DUF104: Protein of un 63.6 7.4 0.00016 24.0 2.3 15 121-135 3-17 (60)
73 COG0071 IbpA Molecular chapero 62.3 26 0.00056 25.1 5.3 36 55-91 100-136 (146)
74 cd06469 p23_DYX1C1_like p23_li 61.7 29 0.00063 21.5 5.0 33 55-88 36-69 (78)
75 PTZ00027 60S ribosomal protein 58.7 44 0.00095 25.4 6.2 47 68-137 13-59 (190)
76 PF04972 BON: BON domain; Int 56.8 25 0.00054 21.0 3.9 26 64-90 12-37 (64)
77 KOG3591 Alpha crystallins [Pos 56.2 22 0.00048 26.6 4.2 33 60-92 120-153 (173)
78 KOG3260 Calcyclin-binding prot 54.5 66 0.0014 24.6 6.4 79 48-142 77-156 (224)
79 CHL00140 rpl6 ribosomal protei 51.4 59 0.0013 24.4 5.8 44 68-137 12-55 (178)
80 cd06467 p23_NUDC_like p23_like 51.1 56 0.0012 20.5 5.1 31 107-137 9-39 (85)
81 PTZ00179 60S ribosomal protein 46.4 85 0.0018 23.8 6.0 47 68-137 12-58 (189)
82 PF00347 Ribosomal_L6: Ribosom 40.8 78 0.0017 19.6 4.4 44 68-137 2-47 (77)
83 cd06494 p23_NUDCD2_like p23-li 40.7 1.1E+02 0.0023 20.3 5.8 31 106-136 15-45 (93)
84 PF07076 DUF1344: Protein of u 39.3 36 0.00078 21.1 2.5 15 110-124 25-39 (61)
85 PRK10568 periplasmic protein; 39.1 79 0.0017 24.0 5.0 27 63-90 72-98 (203)
86 PF05455 GvpH: GvpH; InterPro 38.6 1.3E+02 0.0028 22.7 5.9 38 54-92 135-172 (177)
87 cd02175 GH16_lichenase lichena 36.1 1.3E+02 0.0027 22.8 5.7 48 67-117 30-80 (212)
88 PF14913 DPCD: DPCD protein fa 34.4 48 0.001 25.4 3.0 43 47-90 122-171 (194)
89 COG0097 RplF Ribosomal protein 34.4 1.9E+02 0.0042 21.8 6.2 47 66-137 10-56 (178)
90 PF08845 SymE_toxin: Toxin Sym 32.1 72 0.0016 19.4 3.0 23 61-84 33-56 (57)
91 PF01491 Frataxin_Cyay: Fratax 30.5 66 0.0014 22.0 3.0 18 121-138 30-47 (109)
92 PF07873 YabP: YabP family; I 30.0 43 0.00093 20.7 1.8 23 65-88 22-44 (66)
93 PF12624 Chorein_N: N-terminal 30.0 95 0.0021 21.3 3.8 20 64-84 18-37 (118)
94 PRK00446 cyaY frataxin-like pr 29.8 51 0.0011 22.6 2.3 16 123-138 29-44 (105)
95 TIGR03421 FeS_CyaY iron donor 29.5 49 0.0011 22.5 2.2 16 123-138 27-42 (102)
96 PF03983 SHD1: SLA1 homology d 29.4 64 0.0014 20.6 2.5 33 49-81 14-46 (70)
97 PF13620 CarboxypepD_reg: Carb 29.3 82 0.0018 19.4 3.1 30 54-83 47-77 (82)
98 PRK11198 LysM domain/BON super 29.2 76 0.0017 22.8 3.3 27 64-91 38-64 (147)
99 cd00503 Frataxin Frataxin is a 28.8 59 0.0013 22.2 2.5 17 121-137 28-44 (105)
100 KOG3413 Mitochondrial matrix p 28.7 27 0.0006 25.6 0.8 23 115-137 66-88 (156)
101 PF06977 SdiA-regulated: SdiA- 28.2 3E+02 0.0065 21.7 7.1 65 61-135 15-81 (248)
102 COG4004 Uncharacterized protei 28.2 1.6E+02 0.0034 19.9 4.3 33 48-85 26-58 (96)
103 cd02178 GH16_beta_agarase Beta 28.0 1.7E+02 0.0038 22.8 5.4 44 73-117 60-110 (258)
104 TIGR00251 conserved hypothetic 27.9 1.3E+02 0.0028 19.9 3.9 37 50-88 1-40 (87)
105 cd08023 GH16_laminarinase_like 27.2 2.8E+02 0.0061 21.0 7.0 51 64-117 33-91 (235)
106 TIGR02856 spore_yqfC sporulati 26.2 55 0.0012 21.5 1.9 25 62-87 37-61 (85)
107 PF14814 UB2H: Bifunctional tr 25.9 1.9E+02 0.0041 18.6 4.8 39 97-135 32-72 (85)
108 TIGR02892 spore_yabP sporulati 24.7 62 0.0013 21.3 1.9 22 65-87 21-42 (85)
109 TIGR03422 mito_frataxin fratax 24.0 53 0.0012 22.2 1.5 15 124-138 30-44 (97)
110 PF00722 Glyco_hydro_16: Glyco 23.9 2.3E+02 0.0049 20.4 5.1 45 73-117 14-59 (185)
111 PF14014 DUF4230: Protein of u 23.5 55 0.0012 23.3 1.7 30 113-142 47-81 (157)
112 cd02182 GH16_Strep_laminarinas 22.5 1.9E+02 0.0042 22.5 4.7 19 68-89 45-64 (259)
113 cd00413 Glyco_hydrolase_16 gly 21.8 3.2E+02 0.007 20.0 5.7 48 67-117 28-79 (210)
114 smart00813 Alpha-L-AF_C Alpha- 21.4 2.8E+02 0.006 20.5 5.2 27 113-139 161-188 (189)
115 PF13715 DUF4480: Domain of un 20.8 2.3E+02 0.0049 17.7 5.1 30 49-78 38-67 (88)
116 KOG3247 Uncharacterized conser 20.0 56 0.0012 28.1 1.2 78 44-142 2-82 (466)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=8.2e-28 Score=174.52 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=91.8
Q ss_pred CCCccceEEe-CCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccC
Q 031640 43 MIPTRIDWHD-TPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVD 121 (156)
Q Consensus 43 ~~~p~~di~e-~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 121 (156)
...|++||.| ++++|+|+++|||++++||+|++++ +.|+|+|+++.+ .++..|+++|+++|+|+|+|.||++||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 3458899998 4779999999999999999999997 699999997643 35678999999999999999999999998
Q ss_pred ceEEEEeCCEEEEEEeccCCCCCCCCceEEEeee
Q 031640 122 RITAHIANSTLTVTVPKKDIKKHHGHSRSIKITG 155 (156)
Q Consensus 122 ~i~A~~~~GvL~I~~pK~~~~~~~~~~~~I~I~~ 155 (156)
+|+|+||||+|+|||..+... +.++|+|+-
T Consensus 107 --~A~~~nGVL~I~lPK~~~~~~--~~rkI~I~~ 136 (142)
T PRK11597 107 --GATFVNGLLHIDLIRNEPEAI--APQRIAISE 136 (142)
T ss_pred --cCEEcCCEEEEEEeccCcccc--CCcEEEECC
Confidence 699999999999999754433 458999863
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=6.5e-28 Score=174.35 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=90.2
Q ss_pred ccceEEe-CCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceE
Q 031640 46 TRIDWHD-TPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRIT 124 (156)
Q Consensus 46 p~~di~e-~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 124 (156)
|++||.+ ++++|.|+++|||++++||+|++++ +.|+|+|+++.+. ++.+++++|+++|+|.|+|.||.+|+.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8899994 8999999999999999999999998 5999999976543 4567999999999999999999999998 4
Q ss_pred EEEeCCEEEEEEeccCCCCCCCCceEEEee
Q 031640 125 AHIANSTLTVTVPKKDIKKHHGHSRSIKIT 154 (156)
Q Consensus 125 A~~~~GvL~I~~pK~~~~~~~~~~~~I~I~ 154 (156)
|+|+||||+|++||..+... +.++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~--~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAK--KPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCcccc--CCeEEeeC
Confidence 99999999999999754443 55999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-27 Score=173.15 Aligned_cols=108 Identities=33% Similarity=0.505 Sum_probs=100.2
Q ss_pred CCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCce
Q 031640 44 IPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123 (156)
Q Consensus 44 ~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 123 (156)
..|++||+++++.|+|.++|||++++||+|++++ +.|+|+|++..+...+...++++|+.+|+|.|+|.||..|+.+.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 6799999999999999999999999999999998 599999999987777788999999999999999999999999999
Q ss_pred EEEEeCCEEEEEEeccCCCCCCCCceEEEee
Q 031640 124 TAHIANSTLTVTVPKKDIKKHHGHSRSIKIT 154 (156)
Q Consensus 124 ~A~~~~GvL~I~~pK~~~~~~~~~~~~I~I~ 154 (156)
+|+|+||+|+|+|||.++.+. +.+.|+|+
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~--~~~~i~I~ 146 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEK--KPKRIEIE 146 (146)
T ss_pred eeEeeCcEEEEEEeccccccc--cCceeecC
Confidence 999999999999999998754 55888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=1.1e-26 Score=157.32 Aligned_cols=92 Identities=61% Similarity=0.996 Sum_probs=85.7
Q ss_pred cceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEE
Q 031640 47 RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH 126 (156)
Q Consensus 47 ~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 126 (156)
++||.|++++|.|.++|||++++||+|++.+++.|+|+|++..+...++..++++|+.+|+|.|+|.||..++.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999864589999998876666678899999999999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 031640 127 IANSTLTVTVPK 138 (156)
Q Consensus 127 ~~~GvL~I~~pK 138 (156)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=1.8e-24 Score=148.55 Aligned_cols=102 Identities=37% Similarity=0.623 Sum_probs=83.4
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA 128 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 128 (156)
||.+++++|.|.++|||+++++|+|++++ +.|+|+|++. ....+..++..|+..++|.|+|.||+++|.++|+|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 78999999999999999999999999998 4999999999 33445677888999999999999999999999999999
Q ss_pred CCEEEEEEeccCCCCCCCCceEEEee
Q 031640 129 NSTLTVTVPKKDIKKHHGHSRSIKIT 154 (156)
Q Consensus 129 ~GvL~I~~pK~~~~~~~~~~~~I~I~ 154 (156)
||+|+|++||....+. ...++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~-~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEED-SQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTT-SSSCEE-ET
T ss_pred CCEEEEEEEccccccC-CCCeEEEeC
Confidence 9999999999887642 256999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.92 E-value=1.4e-24 Score=147.13 Aligned_cols=90 Identities=36% Similarity=0.561 Sum_probs=82.2
Q ss_pred cceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccc--cCCccEEEEeeeeeeEEEEEECCCCcccCceE
Q 031640 47 RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKE--ERTDEGHRLEVAVGKFSRRFQLPENAMVDRIT 124 (156)
Q Consensus 47 ~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 124 (156)
++||.|+++.|+|.++|||+++++|+|++++ +.|+|+|+++...+ +.+..++++|+.+|+|.|+|.|| +++.++|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 6899999999999999999999999999997 59999999986533 23457999999999999999999 79999999
Q ss_pred EEEeCCEEEEEEec
Q 031640 125 AHIANSTLTVTVPK 138 (156)
Q Consensus 125 A~~~~GvL~I~~pK 138 (156)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=4.6e-24 Score=144.06 Aligned_cols=89 Identities=24% Similarity=0.393 Sum_probs=81.4
Q ss_pred ccceEEeCC-CeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceE
Q 031640 46 TRIDWHDTP-ECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRIT 124 (156)
Q Consensus 46 p~~di~e~~-~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 124 (156)
|+++|.+++ +.|.|.++|||+++++|+|++++ +.|+|+|+++.... ++.+|+++|+.+|+|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 578999975 89999999999999999999997 59999999988765 5678999999999999999999999874 8
Q ss_pred EEEeCCEEEEEEec
Q 031640 125 AHIANSTLTVTVPK 138 (156)
Q Consensus 125 A~~~~GvL~I~~pK 138 (156)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=4.1e-23 Score=138.35 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=72.8
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE-
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI- 127 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~- 127 (156)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|.++| |.|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 78999999999999999999999999997 5999999875443 234565544 99999999999999999999
Q ss_pred eCCEEEEEEec
Q 031640 128 ANSTLTVTVPK 138 (156)
Q Consensus 128 ~~GvL~I~~pK 138 (156)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.9e-22 Score=134.26 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=71.5
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE-
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI- 127 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~- 127 (156)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++..+.. ...++++ .|.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~--~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQD--EHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcC--CCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 47789999999999999999999999997 59999998764332 3345554 499999999999999999999
Q ss_pred eCCEEEEEEec
Q 031640 128 ANSTLTVTVPK 138 (156)
Q Consensus 128 ~~GvL~I~~pK 138 (156)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 79999999997
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=2.6e-22 Score=133.90 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=71.3
Q ss_pred EEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe-
Q 031640 50 WHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA- 128 (156)
Q Consensus 50 i~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 128 (156)
+.+++++|.|.++|||++++||+|++.+ +.|+|+|++..+.+ ...++++ .|.|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQD--EHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeC--CCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 6778999999999999999999999997 69999998765432 3445543 5999999999999999999995
Q ss_pred CCEEEEEEecc
Q 031640 129 NSTLTVTVPKK 139 (156)
Q Consensus 129 ~GvL~I~~pK~ 139 (156)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=2.8e-22 Score=132.74 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=71.3
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE-
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI- 127 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~- 127 (156)
+|.|++++|.|.++|||++++||+|++++ +.|+|+|+++.+. + ..+|+|.|+|.||.+||.++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----~------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----G------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----C------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68899999999999999999999999997 6999999986432 1 2478999999999999999999997
Q ss_pred eCCEEEEEEec
Q 031640 128 ANSTLTVTVPK 138 (156)
Q Consensus 128 ~~GvL~I~~pK 138 (156)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=9.2e-22 Score=132.08 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=72.9
Q ss_pred eCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE-eCC
Q 031640 52 DTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI-ANS 130 (156)
Q Consensus 52 e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~~G 130 (156)
+.++.|.|.++||||+++||+|++++ +.|+|+|++..+.......+. +.+|+|.|+|.||++||.+.|+|.| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45779999999999999999999997 699999998766554445554 3489999999999999999999999 999
Q ss_pred EEEEEEec
Q 031640 131 TLTVTVPK 138 (156)
Q Consensus 131 vL~I~~pK 138 (156)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.3e-21 Score=131.09 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=71.9
Q ss_pred ceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE
Q 031640 48 IDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI 127 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 127 (156)
.+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|+++.+.. ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 589999999999999999999999999997 59999999865332 22232 45899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 031640 128 A-NSTLTVTVP 137 (156)
Q Consensus 128 ~-~GvL~I~~p 137 (156)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=2e-21 Score=129.36 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=69.1
Q ss_pred EEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe-
Q 031640 50 WHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA- 128 (156)
Q Consensus 50 i~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 128 (156)
+..++++|.|.++|||++++||+|++.+ +.|+|+|++.... +...+. .+.|+|+|.||.+||.++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFV-----SREFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEE-----EEEEEEEEECCCCCChhhEEEEecC
Confidence 4456889999999999999999999998 5999999986433 222343 345999999999999999999995
Q ss_pred CCEEEEEEec
Q 031640 129 NSTLTVTVPK 138 (156)
Q Consensus 129 ~GvL~I~~pK 138 (156)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=9.1e-21 Score=125.84 Aligned_cols=88 Identities=49% Similarity=0.722 Sum_probs=80.7
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA 128 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 128 (156)
++.|+++.|.|.++|||+++++|+|++.+ +.|.|+|++........ .+...++..+.|.|+|.||.+++.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 46788999999999999999999999998 59999999997765443 67788999999999999999999999999999
Q ss_pred CCEEEEEEec
Q 031640 129 NSTLTVTVPK 138 (156)
Q Consensus 129 ~GvL~I~~pK 138 (156)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=8.3e-21 Score=127.25 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCC-E
Q 031640 53 TPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANS-T 131 (156)
Q Consensus 53 ~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G-v 131 (156)
++++|+|.++|||++++||+|++.+ +.|+|+|+++.+.+.+. ..|+.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 4679999999999999999999998 59999999876543322 2478899999999999999999999999776 9
Q ss_pred EEEEEe
Q 031640 132 LTVTVP 137 (156)
Q Consensus 132 L~I~~p 137 (156)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999876
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.3e-20 Score=125.24 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=68.4
Q ss_pred EeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE-eC
Q 031640 51 HDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI-AN 129 (156)
Q Consensus 51 ~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~~ 129 (156)
.|++++|.|+++|||++++||+|++.+ +.|+|+|++..+.. ..++. .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 467889999999999999999999998 59999999876542 23332 34899999999999999999998 89
Q ss_pred CEEEEEEe
Q 031640 130 STLTVTVP 137 (156)
Q Consensus 130 GvL~I~~p 137 (156)
|+|+|+.|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=2.5e-20 Score=123.87 Aligned_cols=77 Identities=29% Similarity=0.548 Sum_probs=67.8
Q ss_pred CCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeC-CEE
Q 031640 54 PECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIAN-STL 132 (156)
Q Consensus 54 ~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~-GvL 132 (156)
+++|.|.++||||++++|+|++++ +.|+|+|+++.... .. ++.+++|.|+|.||.+||.++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 359999999999999999999997 69999999876543 11 2346889999999999999999999998 999
Q ss_pred EEEEec
Q 031640 133 TVTVPK 138 (156)
Q Consensus 133 ~I~~pK 138 (156)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.7e-19 Score=134.09 Aligned_cols=112 Identities=48% Similarity=0.726 Sum_probs=99.2
Q ss_pred CCCCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEeccccc--CCccEEEEeeeeeeEEEEEECCCCcc
Q 031640 42 MMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEE--RTDEGHRLEVAVGKFSRRFQLPENAM 119 (156)
Q Consensus 42 ~~~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~~~f~r~~~LP~~vd 119 (156)
....++.++.+.++.|.+.+++||+.+++++|.+++++.|.|+|++..+.+. ....+...|+..|.|.|.+.||++++
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~ 160 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD 160 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc
Confidence 3455677889999999999999999999999999986579999999988664 45678888999999999999999999
Q ss_pred cCceEEEEeCCEEEEEEeccCC--CCCCCCceEEEeee
Q 031640 120 VDRITAHIANSTLTVTVPKKDI--KKHHGHSRSIKITG 155 (156)
Q Consensus 120 ~~~i~A~~~~GvL~I~~pK~~~--~~~~~~~~~I~I~~ 155 (156)
.+.|+|.|+||||+|++||... .+. ..+.|.|.+
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~--~v~~i~i~~ 196 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKP--KVRQIAISG 196 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCC--ccceeeccC
Confidence 9999999999999999999888 466 778887764
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.76 E-value=7.4e-18 Score=113.72 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=70.1
Q ss_pred EEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe-
Q 031640 50 WHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA- 128 (156)
Q Consensus 50 i~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 128 (156)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|+++.+..+ ..+. .++|.|+|.||++||.+.|+|.+.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4456889999999999999999999997 699999999876532 2332 478999999999999999999996
Q ss_pred CCEEEEEEec
Q 031640 129 NSTLTVTVPK 138 (156)
Q Consensus 129 ~GvL~I~~pK 138 (156)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-16 Score=118.57 Aligned_cols=100 Identities=23% Similarity=0.391 Sum_probs=86.2
Q ss_pred ccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 46 TRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 46 p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
...++..++++|.|.+++..|++++|+|++.+ +.|.|+|++++..++ .+ +. .++|.|.|.||++||++.|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~-~G-~v-----~R~F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDE-HG-YV-----SRSFVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCC-CC-eE-----EEEEEEEecCCCCCChhheEE
Confidence 45688889999999999999999999999997 599999999877532 22 22 457999999999999999999
Q ss_pred EE-eCCEEEEEEeccCCCCCCCCceEEEeee
Q 031640 126 HI-ANSTLTVTVPKKDIKKHHGHSRSIKITG 155 (156)
Q Consensus 126 ~~-~~GvL~I~~pK~~~~~~~~~~~~I~I~~ 155 (156)
++ .||+|+|.+||....+. ..+.|+|+.
T Consensus 135 ~LS~dGvLtI~ap~~~~~~~--~er~ipI~~ 163 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPPPKQD--NERSIPIEQ 163 (173)
T ss_pred eeCCCceEEEEccCCCCcCc--cceEEeEee
Confidence 99 99999999999987764 458888874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.58 E-value=2.3e-14 Score=91.88 Aligned_cols=80 Identities=43% Similarity=0.715 Sum_probs=70.6
Q ss_pred EEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeC
Q 031640 50 WHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIAN 129 (156)
Q Consensus 50 i~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~ 129 (156)
+.++++.|.|++++||+.+++++|.+.+ +.|.|+|....... .+...++|.+++.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 3577899999999999999999999998 69999998765433 33456789999999999999999999999
Q ss_pred CEEEEEEec
Q 031640 130 STLTVTVPK 138 (156)
Q Consensus 130 GvL~I~~pK 138 (156)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.35 E-value=1e-11 Score=80.93 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=63.8
Q ss_pred EEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeC
Q 031640 50 WHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIAN 129 (156)
Q Consensus 50 i~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~ 129 (156)
+.++++.+.|++.+||+++++++|++++ +.|.|++ ..|.+++.||..|+++.++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--------------------~~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--------------------PPYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--------------------CCEEEEEeCcccccccccEEEEeC
Confidence 3578899999999999999999999997 5898886 137788999999999999999999
Q ss_pred CEEEEEEeccCC
Q 031640 130 STLTVTVPKKDI 141 (156)
Q Consensus 130 GvL~I~~pK~~~ 141 (156)
|.|+|+|+|.+.
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999865
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.04 E-value=2.9e-09 Score=69.24 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=65.4
Q ss_pred EeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCC
Q 031640 51 HDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANS 130 (156)
Q Consensus 51 ~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~G 130 (156)
.++++.+.|.+.+||..++++.|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++++|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~~ 65 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVEDR 65 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeCC
Confidence 467889999999999999999999997 69999986430 13477888999999999999999999
Q ss_pred EEEEEEeccCC
Q 031640 131 TLTVTVPKKDI 141 (156)
Q Consensus 131 vL~I~~pK~~~ 141 (156)
.|.|+|+|+.+
T Consensus 66 ~l~i~L~K~~~ 76 (84)
T cd06463 66 KIEITLKKKEP 76 (84)
T ss_pred EEEEEEEECCC
Confidence 99999999876
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.04 E-value=2.6e-09 Score=79.70 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=63.6
Q ss_pred CCCccceEEeCCC-eEEEEEEeCCCCCCC-eEEEEeCC-cEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcc
Q 031640 43 MIPTRIDWHDTPE-CHVFKADLSGFHKHD-VKVEIEDG-RVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAM 119 (156)
Q Consensus 43 ~~~p~~di~e~~~-~y~i~~~lPG~~~ed-i~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd 119 (156)
...+.+++.+.++ .++|.++|||+.+++ |+|.++.+ ..|+|+.. +.+.+++.||.. +
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~ 148 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-D 148 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-c
Confidence 3457789998777 588999999999888 99999842 34555421 125578999976 6
Q ss_pred cCceEEEEeCCEEEEEEeccCCCC
Q 031640 120 VDRITAHIANSTLTVTVPKKDIKK 143 (156)
Q Consensus 120 ~~~i~A~~~~GvL~I~~pK~~~~~ 143 (156)
.+.++|.|+||||+|++-+.++..
T Consensus 149 ~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 149 PEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred cceeeEEEeCceEEEEEeecCCCC
Confidence 788999999999999999877654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.82 E-value=3.2e-08 Score=65.01 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=66.3
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA 128 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 128 (156)
|+.++++.+.|.+.+||+.++++.|.+++ +.|.|++... ..+.|...+.|+..|+++..++.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~---------------~~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP---------------GGSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC---------------CCCeEEEecccccccCchhcEEEEe
Confidence 56788999999999999999999999997 6899986632 0124777889999999999999999
Q ss_pred CCEEEEEEeccCC
Q 031640 129 NSTLTVTVPKKDI 141 (156)
Q Consensus 129 ~GvL~I~~pK~~~ 141 (156)
+|.|+|+|.|...
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.61 E-value=1.7e-06 Score=55.53 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=63.5
Q ss_pred ccceEEeCCCeEEEEEEeCCCC--CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCce
Q 031640 46 TRIDWHDTPECHVFKADLSGFH--KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123 (156)
Q Consensus 46 p~~di~e~~~~y~i~~~lPG~~--~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 123 (156)
|.+++.++++...|.+.+++.. +++++|.+++ +.|.|+...... ..|.....|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 5689999999999999996664 9999999998 599999654322 136677889999999999
Q ss_pred EEEEeCCEEEEEEec
Q 031640 124 TAHIANSTLTVTVPK 138 (156)
Q Consensus 124 ~A~~~~GvL~I~~pK 138 (156)
+..+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.29 E-value=1.5e-05 Score=55.04 Aligned_cols=78 Identities=12% Similarity=0.213 Sum_probs=65.6
Q ss_pred ccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 46 TRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 46 p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
|.+++..+.+.+.|.+.+||. +++.|.++. +.|.|++.... + ...|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~-----~---------~~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG-----G---------GKKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC-----C---------CeeEEEEeEhhhhccccccEE
Confidence 468899999999999999998 889999998 59999975321 0 113566778999999999999
Q ss_pred EEeCCEEEEEEeccC
Q 031640 126 HIANSTLTVTVPKKD 140 (156)
Q Consensus 126 ~~~~GvL~I~~pK~~ 140 (156)
++.++.|+|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.20 E-value=2.2e-05 Score=51.74 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=64.2
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEe
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIA 128 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 128 (156)
|+.++++...|.+.++|+.++++.|.+++ +.|.+++..... ..|.-.+.|...|+++..+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~~---------------~~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPSG---------------NDYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCCC---------------CcEEEeeecCceecchhcEEEEe
Confidence 56788899999999999999999999998 589998754211 12556678989999998888889
Q ss_pred CCEEEEEEeccCCC
Q 031640 129 NSTLTVTVPKKDIK 142 (156)
Q Consensus 129 ~GvL~I~~pK~~~~ 142 (156)
.+.++|.|.|.+..
T Consensus 65 ~~kiei~L~K~~~~ 78 (84)
T cd06489 65 STKIEIKLKKTEAI 78 (84)
T ss_pred CcEEEEEEEcCCCC
Confidence 99999999998643
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.10 E-value=1.9e-05 Score=64.14 Aligned_cols=65 Identities=31% Similarity=0.468 Sum_probs=56.2
Q ss_pred CCeEEEEEEeCCC-CCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEE--eCC
Q 031640 54 PECHVFKADLSGF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI--ANS 130 (156)
Q Consensus 54 ~~~y~i~~~lPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~--~~G 130 (156)
.+.++|++.|||+ +..+|+|.|.+ ..|.|..... .|.-.+.||..|+.+..+|.| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4689999999999 88899999998 5898885421 366789999999999999999 668
Q ss_pred EEEEEEe
Q 031640 131 TLTVTVP 137 (156)
Q Consensus 131 vL~I~~p 137 (156)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.02 E-value=0.00014 Score=48.39 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=67.0
Q ss_pred cceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEE
Q 031640 47 RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH 126 (156)
Q Consensus 47 ~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 126 (156)
+.|++.+++...|.+.+.|+.++++.|.+++ +.|.|+...... ..|.-.+.|-..|+++..+-.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEGN---------------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCCC---------------ceEEEEeeccceEChhHcEEE
Confidence 4689999999999999999999999999987 588887543310 136677789889999998888
Q ss_pred EeCCEEEEEEeccCCCC
Q 031640 127 IANSTLTVTVPKKDIKK 143 (156)
Q Consensus 127 ~~~GvL~I~~pK~~~~~ 143 (156)
...+.++|++.|+++..
T Consensus 66 v~~~kvei~L~K~~~~~ 82 (87)
T cd06488 66 MLPTKVEIKLRKAEPGS 82 (87)
T ss_pred ecCcEEEEEEEeCCCCc
Confidence 99999999999987543
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.94 E-value=0.00021 Score=47.66 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=63.4
Q ss_pred cceEEeCCCeEEEEEEeCCCCC---CCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEE-CCCCcccCc
Q 031640 47 RIDWHDTPECHVFKADLSGFHK---HDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQ-LPENAMVDR 122 (156)
Q Consensus 47 ~~di~e~~~~y~i~~~lPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~-LP~~vd~~~ 122 (156)
.+++.++++...|.+.+|+... ++++|.++. +.|.|++.... +. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~-----~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN-----GK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC-----Cc----------EEEEEehHhhCccCccc
Confidence 4688999999999999999976 999999998 58999874211 11 1333443 888899999
Q ss_pred eEEEEeCCEEEEEEeccCC
Q 031640 123 ITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 123 i~A~~~~GvL~I~~pK~~~ 141 (156)
.+..+..+-++|+|.|+++
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999875
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.92 E-value=0.00015 Score=47.45 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=60.2
Q ss_pred ceEEeCCCeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEE
Q 031640 48 IDWHDTPECHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH 126 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 126 (156)
+.+.++++...|.+.+| ++.+++++|.+.+ +.|.|+... + .+.-.-.|...|+++..+-.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~-----------~~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------G-----------EPLLDGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------C-----------CceEcCcccCceeEcCCEEE
Confidence 35788899999999997 7899999999998 589888631 0 01122358888999998888
Q ss_pred EeC-CEEEEEEeccCC
Q 031640 127 IAN-STLTVTVPKKDI 141 (156)
Q Consensus 127 ~~~-GvL~I~~pK~~~ 141 (156)
+++ ..|.|+|+|+++
T Consensus 62 ~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 62 LEDGKLLEITLEKRNE 77 (85)
T ss_pred EeCCCEEEEEEEECCC
Confidence 999 999999999876
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.78 E-value=0.00047 Score=45.52 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=58.8
Q ss_pred ceEEeCCCeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEE
Q 031640 48 IDWHDTPECHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH 126 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 126 (156)
+++.++.+...|.+.+| |+.+++++|+++. +.|.|... .+. .+ -.-.|...|+++..+=.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~~~---------------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--DQA---------------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--CCC---------------eE-EeCcccCcccccCcEEE
Confidence 35788899999999996 9999999999998 58888642 000 01 22368888999998877
Q ss_pred EeCC-EEEEEEeccCCC
Q 031640 127 IANS-TLTVTVPKKDIK 142 (156)
Q Consensus 127 ~~~G-vL~I~~pK~~~~ 142 (156)
+++| .|.|+|.|+++.
T Consensus 62 i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 62 IKENKSLEVSLIKKDEG 78 (85)
T ss_pred EeCCCEEEEEEEECCCC
Confidence 8777 799999998753
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.58 E-value=0.0022 Score=44.38 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=61.9
Q ss_pred ccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 46 TRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 46 p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
|.+++.++.+.+.|++.+|+ .++++|.+++ +.|.++|... ++. .|.-++.|-..|+++..+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCeE
Confidence 67899999999999999999 5899999998 5999998431 111 1344667778899998888
Q ss_pred EEeCCEEEEEEeccCC
Q 031640 126 HIANSTLTVTVPKKDI 141 (156)
Q Consensus 126 ~~~~GvL~I~~pK~~~ 141 (156)
....-.+.|.|.|+++
T Consensus 64 ~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDRSILCCLRKGKE 79 (106)
T ss_pred EeCCceEEEEEEeCCC
Confidence 8878889999999764
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.33 E-value=0.0034 Score=42.40 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=61.0
Q ss_pred CccceEEeCCCeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCce
Q 031640 45 PTRIDWHDTPECHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123 (156)
Q Consensus 45 ~p~~di~e~~~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 123 (156)
.+.+.+..+.+...|++.+| |...+|+.|.+.. +.|.|.... .. .-.| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g--------~~-----~l~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG--------QE-----VLKG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC--------EE-----EEcC------cccCccCcccC
Confidence 45689999999999999998 8999999999998 588887421 00 0112 57788888988
Q ss_pred EEEEeCCE-EEEEEeccCCC
Q 031640 124 TAHIANST-LTVTVPKKDIK 142 (156)
Q Consensus 124 ~A~~~~Gv-L~I~~pK~~~~ 142 (156)
.=.+++|. |.|.|.|....
T Consensus 65 tWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred EEEEECCcEEEEEEEeCCCC
Confidence 88888875 89999997643
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.10 E-value=0.0046 Score=51.23 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=67.3
Q ss_pred CccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceE
Q 031640 45 PTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRIT 124 (156)
Q Consensus 45 ~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 124 (156)
..+.+++.+++.+.|.|-+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE---------------DAYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC---------------cceeecccccccccccccE
Confidence 367899999999999999999999999999997 588888643211 1255567888889999999
Q ss_pred EEEeCCEEEEEEeccCC
Q 031640 125 AHIANSTLTVTVPKKDI 141 (156)
Q Consensus 125 A~~~~GvL~I~~pK~~~ 141 (156)
..+.-..++|+|.|.+.
T Consensus 220 ~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEEecceEEEEEecCCC
Confidence 99988899999999864
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.89 E-value=0.0058 Score=45.96 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=63.0
Q ss_pred CccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceE
Q 031640 45 PTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRIT 124 (156)
Q Consensus 45 ~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~ 124 (156)
.+++|+++++...+|.+-.+++.++|+.|.+.+ +.|.+..+.+.+.. |.-...|-..|.+++.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~~---------------~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGSE---------------YNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCchh---------------hhhhHHhccccccccee
Confidence 457899999999999999999999999999997 68888866542221 33333466668888877
Q ss_pred EEEeCCEEEEEEeccCC
Q 031640 125 AHIANSTLTVTVPKKDI 141 (156)
Q Consensus 125 A~~~~GvL~I~~pK~~~ 141 (156)
-++----++|+|+|.+.
T Consensus 67 ~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAEI 83 (196)
T ss_pred eEeeeeeEEEEeccccc
Confidence 77777888999998654
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.68 E-value=0.057 Score=35.79 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=55.8
Q ss_pred ceEEeCCCeEEEEEEeCC--CCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 48 IDWHDTPECHVFKADLSG--FHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lPG--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
.|++.+++...|.+-..+ ....++.+.... +.|.|+-... . ..|...+.|=..++.+. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-~---------------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-D---------------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-C---------------ceEEEeeeccccCCCCc-EE
Confidence 478999999999999885 455555566565 4788875432 1 02666778877788775 55
Q ss_pred EE--eCCEEEEEEeccCCCC
Q 031640 126 HI--ANSTLTVTVPKKDIKK 143 (156)
Q Consensus 126 ~~--~~GvL~I~~pK~~~~~ 143 (156)
++ .-|.++|+|.|.++.+
T Consensus 63 ~~~~~~~KVEI~L~K~e~~~ 82 (87)
T cd06490 63 RISTETGKIELVLKKKEPEK 82 (87)
T ss_pred EEcccCceEEEEEEcCCCCc
Confidence 55 4889999999987654
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.00 E-value=0.1 Score=34.67 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=53.7
Q ss_pred eEEeCCCeEEEEEEeC-C--CCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 49 DWHDTPECHVFKADLS-G--FHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 49 di~e~~~~y~i~~~lP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
.+..+.+...|.+.+| + .+.++++|.+.. +.|.|.-+.+ ... + .=.|...|+.+...=
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~~--------i--~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PPI--------I--DGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ceE--------E--eCcccCcccccccEE
Confidence 3456777888999986 3 889999999998 5888864211 000 1 115778888888777
Q ss_pred EEeCC-EEEEEEeccCC
Q 031640 126 HIANS-TLTVTVPKKDI 141 (156)
Q Consensus 126 ~~~~G-vL~I~~pK~~~ 141 (156)
.+++| .|.|+|-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 78886 89999999754
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.76 E-value=0.59 Score=32.02 Aligned_cols=80 Identities=8% Similarity=0.108 Sum_probs=58.0
Q ss_pred CccceEEeCCCeEEEEEEeC-CC-CCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCc
Q 031640 45 PTRIDWHDTPECHVFKADLS-GF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDR 122 (156)
Q Consensus 45 ~p~~di~e~~~~y~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 122 (156)
...+.+..+-+...|++.+| |. +.++|.|.+.. +.|.|.-+..... ..+ -.| .|+..|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~----~~~-----i~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGE----KVL-----MEG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCC----ceE-----EeC------cccCcccCcc
Confidence 35678899999999999999 54 67899999998 5888875310000 001 011 5778888888
Q ss_pred eEEEEeCC-EEEEEEeccC
Q 031640 123 ITAHIANS-TLTVTVPKKD 140 (156)
Q Consensus 123 i~A~~~~G-vL~I~~pK~~ 140 (156)
..=.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 77778886 5899999974
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=88.41 E-value=7.4 Score=27.89 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=50.4
Q ss_pred ccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEE
Q 031640 46 TRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125 (156)
Q Consensus 46 p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A 125 (156)
..+.|...++ ..+++.. ..+.++++.++ +.|.|+.+....... ..+..... ...-.-.+.||+....++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~~--~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFFF--KGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEeccccccc--ceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 3456666443 4445554 22268888887 599999762211111 11211111 334567889999998899999
Q ss_pred EEeCCEEEEE
Q 031640 126 HIANSTLTVT 135 (156)
Q Consensus 126 ~~~~GvL~I~ 135 (156)
...+|-+.|.
T Consensus 138 ~~~~G~i~i~ 147 (166)
T PF13349_consen 138 KTSSGDITIE 147 (166)
T ss_pred EeccccEEEE
Confidence 9999977765
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=2.6 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCc
Q 031640 43 MIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDR 122 (156)
Q Consensus 43 ~~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 122 (156)
...|.+.+.++.+.+.+++.++-- .+..|.++. +.|+++|+..... -.+..+|.|=..|++++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d~--------------~~~~~~ief~~eIdpe~ 67 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGADN--------------HKYENEIEFFDEIDPEK 67 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCCc--------------eeeEEeeehhhhcCHhh
Confidence 456788889999999999999866 566688886 5899998764221 12556688888899999
Q ss_pred eEEEEeCCEEEEEEeccC
Q 031640 123 ITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 123 i~A~~~~GvL~I~~pK~~ 140 (156)
.+.+-. +-....++++.
T Consensus 68 sk~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 68 SKHKRT-SRSIFCILRKK 84 (180)
T ss_pred cccccc-ceEEEEEEEcc
Confidence 888876 55555555443
No 44
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=85.15 E-value=6.7 Score=31.40 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=69.0
Q ss_pred CCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCce
Q 031640 44 IPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123 (156)
Q Consensus 44 ~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 123 (156)
..-+.|+..+++.+.|.+..-|.-++.-.|..+. ..|.|.-..... -.+|...+.|=.-|+.+..
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~s 277 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEES 277 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC--------------Cceeeccceeeeeechhhc
Confidence 3445789999999999999999999988888875 688888654322 1247777778777999999
Q ss_pred EEEEeCCEEEEEEeccCCCCC
Q 031640 124 TAHIANSTLTVTVPKKDIKKH 144 (156)
Q Consensus 124 ~A~~~~GvL~I~~pK~~~~~~ 144 (156)
.+.+-.-.++|+|+|+++.+.
T Consensus 278 ~v~m~~tkVEIsl~k~ep~sW 298 (320)
T KOG1667|consen 278 SVVMGETKVEISLKKAEPGSW 298 (320)
T ss_pred eEEeecceEEEEEeccCCCCc
Confidence 999999999999999988665
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.12 E-value=2.3 Score=28.19 Aligned_cols=34 Identities=6% Similarity=0.174 Sum_probs=29.6
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 141 (156)
.|.-+..|| +++++.|+-++++|.|+|..-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 467778999 8999999999999999999987553
No 46
>PF14913 DPCD: DPCD protein family
Probab=81.47 E-value=16 Score=27.93 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=56.6
Q ss_pred CCCccceEEeCCCeEEEEE-EeCCCCCCCeEEEEeCC-cEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCC---
Q 031640 43 MIPTRIDWHDTPECHVFKA-DLSGFHKHDVKVEIEDG-RVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPEN--- 117 (156)
Q Consensus 43 ~~~p~~di~e~~~~y~i~~-~lPG~~~edi~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~--- 117 (156)
...|-+-=.++...|.-++ +|| +.++-.+|+++++ +.++|+.+. ..|.+.|.+|+-
T Consensus 84 s~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~R~ 144 (194)
T PF14913_consen 84 SSNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLDRC 144 (194)
T ss_pred CCCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHHhh
Confidence 4455555577888999998 677 4567777777653 478888432 136678888853
Q ss_pred ---cccCceEEEEeCCEEEEEEeccC
Q 031640 118 ---AMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 118 ---vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
.+.+.++....|..|.|+..|..
T Consensus 145 ~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 145 GLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred CCCcchhhceeeeecCeEEEEecCcH
Confidence 35667888889999999998854
No 47
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=80.17 E-value=0.87 Score=36.86 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCce
Q 031640 44 IPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123 (156)
Q Consensus 44 ~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i 123 (156)
....+++.++.+...|-+.-|-+..++|++.++. |.|.|+.+.+... --+.....|-..|+++..
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~ 239 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLR--------------LWNDITISLYKEVYPDIR 239 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccc--------------hHHHhhhhhhhhcCcchh
Confidence 3456778888899999999999999999999996 7999996644321 124456677788888887
Q ss_pred EEEEeCCEEEEEEeccCC
Q 031640 124 TAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 124 ~A~~~~GvL~I~~pK~~~ 141 (156)
.-+.---+++|++.|.+.
T Consensus 240 s~k~fsK~~e~~l~KV~~ 257 (368)
T COG5091 240 SIKSFSKRVEVHLRKVEM 257 (368)
T ss_pred hhhhcchhheehhhhhhh
Confidence 777666888888887654
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=79.78 E-value=5.2 Score=26.31 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.9
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccCCC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDIK 142 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~~ 142 (156)
+|.-.+.|| ++..+.|+-.++++.|+|...+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 577788999 69999999999999999998765543
No 49
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=79.77 E-value=19 Score=27.14 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=54.7
Q ss_pred CCccceEEeCCCeEEEEEEeC-CC-CCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccC
Q 031640 44 IPTRIDWHDTPECHVFKADLS-GF-HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVD 121 (156)
Q Consensus 44 ~~p~~di~e~~~~y~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 121 (156)
..+.+.+..+=..+.|.+.+| |+ +..+|.|.+.. +.|.|.-+.+.. +. .| .|...|+.+
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~--------il----dG------~L~~~vk~d 77 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP--------IL----DG------ELSHSVKVD 77 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc--------ee----cC------ccccccccc
Confidence 345667777777788888886 77 88899999997 677777432211 10 11 466678888
Q ss_pred ceEEEEeCCEEEEEEeccCC
Q 031640 122 RITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 122 ~i~A~~~~GvL~I~~pK~~~ 141 (156)
...=.+++|.+.|.+-++..
T Consensus 78 es~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 78 ESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred cceEEecCCEEEEEEeeccc
Confidence 88888899977777665543
No 50
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=79.35 E-value=9.3 Score=23.61 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=31.8
Q ss_pred cceEE-eCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEE
Q 031640 47 RIDWH-DTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEK 87 (156)
Q Consensus 47 ~~di~-e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~ 87 (156)
++.+. -..+.|.|++..+|+....-.|.+..|....|+.+-
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 34555 457899999999999998888888866677777553
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=77.63 E-value=6.8 Score=25.42 Aligned_cols=32 Identities=6% Similarity=0.222 Sum_probs=28.3
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKK 139 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 139 (156)
.|.-.+.|| +++++.|+-.+.++.|+|...+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 577788998 89999999999999999998654
No 52
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=76.58 E-value=6.5 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=28.5
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
+|.-.+.|| ++.++.|+.+++||.|+|..-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788998 799999999999999999987643
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=76.36 E-value=4.6 Score=26.48 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=25.2
Q ss_pred CeEEEEEEeCCCCCCCeEEEEeCCcEEEEEE
Q 031640 55 ECHVFKADLSGFHKHDVKVEIEDGRVLCISG 85 (156)
Q Consensus 55 ~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g 85 (156)
+.|.-.+.||.++.+.++-++++| .|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 456667889999999999999987 999984
No 54
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=76.35 E-value=7.3 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=28.4
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
.|.-.+.|| +++++.|+-.+++|.|+|.-.+.+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788898 799999999999999999987543
No 55
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=75.66 E-value=7.9 Score=25.36 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=29.2
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 141 (156)
.|.-.+.|| +++++.|+-.+++|.|+|+--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 477788898 7999999999999999999977543
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.85 E-value=8 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEE
Q 031640 54 PECHVFKADLS-GFHKHDVKVEIEDGRVLCISG 85 (156)
Q Consensus 54 ~~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g 85 (156)
...|.-.+.|| +++.+.++..+.+| .|+|+.
T Consensus 55 ~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~ 86 (88)
T cd06464 55 YGSFSRSFRLPEDVDPDKIKASLENG-VLTITL 86 (88)
T ss_pred CcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEE
Confidence 56788899999 77889999999986 999985
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=73.75 E-value=9.7 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=28.7
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
.|.-.+.|| +++++.|+-++++|.|+|.--+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477788999 899999999999999999987643
No 58
>PRK10743 heat shock protein IbpA; Provisional
Probab=73.57 E-value=8.8 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.9
Q ss_pred EECCCCcccCceEEEEeCCEEEEEEeccCC
Q 031640 112 FQLPENAMVDRITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 112 ~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 141 (156)
..|| +++.+.|+-.+++|+|+|..-+...
T Consensus 51 aelP-Gv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 51 IAVA-GFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EECC-CCCHHHeEEEEECCEEEEEEEECcc
Confidence 4688 8999999999999999999876543
No 59
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.44 E-value=8.6 Score=24.71 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=29.9
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 141 (156)
.|.-.+.|| ++.++.|+-.++++.|+|...+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588889999 6999999999999999999987654
No 60
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=70.64 E-value=14 Score=24.19 Aligned_cols=33 Identities=3% Similarity=0.209 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
.|.-.+.|| +++++.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 577788998 799999999999999999997654
No 61
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=70.57 E-value=12 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccCC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDI 141 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 141 (156)
.|.-.+.|| ++.++.|+-.++++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 477788898 7999999999999999999976543
No 62
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=69.85 E-value=27 Score=26.34 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 67 HKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 67 ~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
=|++++|++++ +.++|+|. .|...+.|.-+ .++...++|.|.|...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp------------------~G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGP------------------KGELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECC------------------CeEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 36889999997 69999986 34455544322 4566778898887754
No 63
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=68.72 E-value=14 Score=24.01 Aligned_cols=33 Identities=9% Similarity=0.243 Sum_probs=28.2
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
.|.-.+.|| +++++.|+-.+.++.|+|.--+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788897 799999999999999999996543
No 64
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=68.27 E-value=27 Score=23.56 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=31.6
Q ss_pred CCCccceEEeCCCeEEEEEEeCCC-----CCCCeEEEEeCCcEEEEE
Q 031640 43 MIPTRIDWHDTPECHVFKADLSGF-----HKHDVKVEIEDGRVLCIS 84 (156)
Q Consensus 43 ~~~p~~di~e~~~~y~i~~~lPG~-----~~edi~V~v~~~~~L~I~ 84 (156)
...|.+.|+++++.|.|.+--+.. +++...|+-++| .|.|.
T Consensus 23 ~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 346899999999999999866554 667777887776 66665
No 65
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=68.22 E-value=29 Score=25.92 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++|+|++++ +.|+|+|. .|...+.+ |. .++...+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp------------------~G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGP------------------KGELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcC------------------CeEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5889999987 69999986 34455544 53 4556678888777754
No 66
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.80 E-value=12 Score=24.50 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEE
Q 031640 54 PECHVFKADLS-GFHKHDVKVEIEDGRVLCISG 85 (156)
Q Consensus 54 ~~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g 85 (156)
.+.|.-.+.|| +++.+.++-.+++| .|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45788889999 78999999999997 999874
No 67
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=66.93 E-value=37 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++++|++++ +.++|+|.+ |+..+.+. |. .++...+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5789999997 699999863 44544442 32 4556778898888754
No 68
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=66.83 E-value=14 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=23.8
Q ss_pred eEEEEEEeC-CCCCCCeEEEEe-CCcEEEEEE
Q 031640 56 CHVFKADLS-GFHKHDVKVEIE-DGRVLCISG 85 (156)
Q Consensus 56 ~y~i~~~lP-G~~~edi~V~v~-~~~~L~I~g 85 (156)
.|.=++.|| +++.++|+-.+. +| .|+|++
T Consensus 59 ~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 59 NFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 456677898 889999999998 65 999986
No 69
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=66.66 E-value=14 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceEEEEeCCEEEEEEeccC
Q 031640 108 FSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140 (156)
Q Consensus 108 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 140 (156)
|.-+..|| +++.+.|.-.+++|.|+|.--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 33345688 899999999999999999997654
No 70
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.90 E-value=20 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=26.9
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEecc
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKK 139 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 139 (156)
.|.-.+.|| +++.+.|+-.++++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 577788999 78999999999999999999877
No 71
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=65.33 E-value=32 Score=25.74 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=30.9
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++|+|++++ +.|+|+|. .|...+.| |. .++...+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp------------------~G~l~~~~--~~-----~v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGP------------------KGELSRTL--NP-----DVTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECC------------------CEEEEEEc--CC-----CeEEEEECCEEEEEcC
Confidence 5899999997 69999986 34455544 43 3455668887777654
No 72
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=63.59 E-value=7.4 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.6
Q ss_pred CceEEEEeCCEEEEE
Q 031640 121 DRITAHIANSTLTVT 135 (156)
Q Consensus 121 ~~i~A~~~~GvL~I~ 135 (156)
..|.|.|+||+|.-.
T Consensus 3 ~~I~aiYe~GvlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENGVLKPL 17 (60)
T ss_dssp --EEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEEC
Confidence 468999999999765
No 73
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.32 E-value=26 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=25.0
Q ss_pred CeEEEEEEeC-CCCCCCeEEEEeCCcEEEEEEEEeccc
Q 031640 55 ECHVFKADLS-GFHKHDVKVEIEDGRVLCISGEKKIEK 91 (156)
Q Consensus 55 ~~y~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~ 91 (156)
+.|.-.+.|| +++.+.++-++.+| .|+|+-.+....
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~~ 136 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEPE 136 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEeccccc
Confidence 3455566666 45667788888887 899987665543
No 74
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=61.69 E-value=29 Score=21.53 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.2
Q ss_pred CeEEEEEEeCC-CCCCCeEEEEeCCcEEEEEEEEe
Q 031640 55 ECHVFKADLSG-FHKHDVKVEIEDGRVLCISGEKK 88 (156)
Q Consensus 55 ~~y~i~~~lPG-~~~edi~V~v~~~~~L~I~g~~~ 88 (156)
+.|.+.++|++ +++++.+..+.++ .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56888999985 5999999999985 899986664
No 75
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=58.74 E-value=44 Score=25.42 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++++|++++ +.++|+|. .|+..+.| |... ..+....+||.|.|.-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp------------------~G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGK------------------YGELTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECC------------------CceEEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 6899999997 69999976 34454443 3211 24666778898777744
No 76
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=56.84 E-value=25 Score=21.03 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=20.4
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEecc
Q 031640 64 SGFHKHDVKVEIEDGRVLCISGEKKIE 90 (156)
Q Consensus 64 PG~~~edi~V~v~~~~~L~I~g~~~~~ 90 (156)
++++..+|+|.+.+| .+.++|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 467777999999986 99999998654
No 77
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=22 Score=26.64 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=26.4
Q ss_pred EEEeC-CCCCCCeEEEEeCCcEEEEEEEEecccc
Q 031640 60 KADLS-GFHKHDVKVEIEDGRVLCISGEKKIEKE 92 (156)
Q Consensus 60 ~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~ 92 (156)
+..|| |++++.|+-++..+..|+|+|.+.....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~ 153 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQ 153 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCcC
Confidence 45677 9999999999975459999998776543
No 78
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=54.48 E-value=66 Score=24.60 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=52.2
Q ss_pred ceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEE-ECCCCcccCceEEE
Q 031640 48 IDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRF-QLPENAMVDRITAH 126 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~LP~~vd~~~i~A~ 126 (156)
+-|-..++-+.+.+.|-|++.|+++|++.. +.|-+.-..-.. .+ |.-.+ .|-.+++.++.+-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlqG-----K~----------y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQG-----KN----------YRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecCC-----cc----------eeeehhhhccccChhhcccc
Confidence 344455677888999999999999999997 577776432211 11 22111 23455777887777
Q ss_pred EeCCEEEEEEeccCCC
Q 031640 127 IANSTLTVTVPKKDIK 142 (156)
Q Consensus 127 ~~~GvL~I~~pK~~~~ 142 (156)
.+-....|.+.|.+..
T Consensus 141 vKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 141 VKTDTVLILCKKVENT 156 (224)
T ss_pred cccceEEEeehhhhcc
Confidence 8777777888665543
No 79
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=51.43 E-value=59 Score=24.35 Aligned_cols=44 Identities=34% Similarity=0.646 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++++|++++ +.|+|+|.. |+..+ .||. .++...+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------------------G~l~~--~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------------------GTLSR--KIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEE--ECCC-----CeEEEEeCCEEEEEcC
Confidence 4789999987 699999763 33433 5554 3556678887777654
No 80
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=51.07 E-value=56 Score=20.54 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.5
Q ss_pred eEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 107 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
...-+|.+|..+..+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3556778999999999999999999999886
No 81
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=46.44 E-value=85 Score=23.83 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
|++++|++++ +.|+|+|.+ |+..+ .||..- -.+....+++.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpk------------------G~Ls~--~~~~~~--~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKR------------------GTLTK--DLRHLQ--LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------cEEEE--EcCCCC--cEEEEEecCCEEEEEeC
Confidence 5899999997 699999863 33433 444310 13556677888777744
No 82
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=40.84 E-value=78 Score=19.58 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEE--EeCCEEEEEEe
Q 031640 68 KHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH--IANSTLTVTVP 137 (156)
Q Consensus 68 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~--~~~GvL~I~~p 137 (156)
++.++|++++ +.+++.|.+ |. .++.+|.. ++.. .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~------------------g~--l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPK------------------GE--LSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSS------------------SE--EEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCC------------------Ee--EEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 5789999997 699999752 22 34567754 4455 56887777665
No 83
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=40.71 E-value=1.1e+02 Score=20.33 Aligned_cols=31 Identities=6% Similarity=0.263 Sum_probs=27.2
Q ss_pred eeEEEEEECCCCcccCceEEEEeCCEEEEEE
Q 031640 106 GKFSRRFQLPENAMVDRITAHIANSTLTVTV 136 (156)
Q Consensus 106 ~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~ 136 (156)
....-+|+||.++..+.++..++..-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3466778999999999999999999999988
No 84
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=39.30 E-value=36 Score=21.13 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=10.0
Q ss_pred EEEECCCCcccCceE
Q 031640 110 RRFQLPENAMVDRIT 124 (156)
Q Consensus 110 r~~~LP~~vd~~~i~ 124 (156)
+++.||+.++.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 356788887766644
No 85
>PRK10568 periplasmic protein; Provisional
Probab=39.09 E-value=79 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=21.6
Q ss_pred eCCCCCCCeEEEEeCCcEEEEEEEEecc
Q 031640 63 LSGFHKHDVKVEIEDGRVLCISGEKKIE 90 (156)
Q Consensus 63 lPG~~~edi~V~v~~~~~L~I~g~~~~~ 90 (156)
-++++..+|+|.+.+| .+.++|.-...
T Consensus 72 ~~~i~~~~I~V~v~~G-~V~L~G~V~s~ 98 (203)
T PRK10568 72 HDNIKSTDISVKTHQK-VVTLSGFVESQ 98 (203)
T ss_pred CCCCCCCceEEEEECC-EEEEEEEeCCH
Confidence 3667777899999986 89999998753
No 86
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=38.58 E-value=1.3e+02 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccc
Q 031640 54 PECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKE 92 (156)
Q Consensus 54 ~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~ 92 (156)
++.|+=++.||--..+-.++++++| .|.|.-++.++..
T Consensus 135 ~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 135 GEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred CCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 4456668889977788889999996 9999988776643
No 87
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=36.14 E-value=1.3e+02 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCcEEEEEEEEeccc--ccCCccEEE-EeeeeeeEEEEEECCCC
Q 031640 67 HKHDVKVEIEDGRVLCISGEKKIEK--EERTDEGHR-LEVAVGKFSRRFQLPEN 117 (156)
Q Consensus 67 ~~edi~V~v~~~~~L~I~g~~~~~~--~~~~~~~~~-~e~~~~~f~r~~~LP~~ 117 (156)
.+++++|. +| .|+|++.+.... .-..+.+.. ....+|.|+-++.+|..
T Consensus 30 ~~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35665554 65 798988765421 111122221 23457899999999854
No 88
>PF14913 DPCD: DPCD protein family
Probab=34.41 E-value=48 Score=25.35 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=32.6
Q ss_pred cceEEeCCCeEEEEEEeCCCC-------CCCeEEEEeCCcEEEEEEEEecc
Q 031640 47 RIDWHDTPECHVFKADLSGFH-------KHDVKVEIEDGRVLCISGEKKIE 90 (156)
Q Consensus 47 ~~di~e~~~~y~i~~~lPG~~-------~edi~V~v~~~~~L~I~g~~~~~ 90 (156)
-+-|.-++.+|.=++.+|.++ .+.|++...+ |.|+|+-+++.+
T Consensus 122 ~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~n-NTLIIsYkKP~~ 171 (194)
T PF14913_consen 122 CIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQN-NTLIISYKKPKE 171 (194)
T ss_pred EEEEECcCccceeEecCCcHHhhCCCcchhhceeeeec-CeEEEEecCcHH
Confidence 355666777899999999553 3477788887 799999888764
No 89
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=1.9e+02 Score=21.81 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=30.5
Q ss_pred CCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEEEe
Q 031640 66 FHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 66 ~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 137 (156)
..|++++|++++ +.++++|.+ |...+.| +..+ ++-..+|+++.+...
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpk------------------GeL~~~~--~~~~----v~v~~~~~~~vv~~~ 56 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPK------------------GELTREF--HDNV----VKVEVEDNILVVRPV 56 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCC------------------cEEEEEe--cCcc----eEEEecCCEEEEeec
Confidence 348999999996 699999763 3344433 3222 566677776666543
No 90
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=32.10 E-value=72 Score=19.36 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEeCCCCC-CCeEEEEeCCcEEEEE
Q 031640 61 ADLSGFHK-HDVKVEIEDGRVLCIS 84 (156)
Q Consensus 61 ~~lPG~~~-edi~V~v~~~~~L~I~ 84 (156)
++-.||.. +.|+|++.+| .|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECC-EEEEe
Confidence 45568855 5899999986 89887
No 91
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=30.52 E-value=66 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.1
Q ss_pred CceEEEEeCCEEEEEEec
Q 031640 121 DRITAHIANSTLTVTVPK 138 (156)
Q Consensus 121 ~~i~A~~~~GvL~I~~pK 138 (156)
..+.+.+.+|||+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 357899999999999953
No 92
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=30.05 E-value=43 Score=20.68 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=18.3
Q ss_pred CCCCCCeEEEEeCCcEEEEEEEEe
Q 031640 65 GFHKHDVKVEIEDGRVLCISGEKK 88 (156)
Q Consensus 65 G~~~edi~V~v~~~~~L~I~g~~~ 88 (156)
-|+.+.|.|....| .|.|+|+.=
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECceE
Confidence 46778899999875 899998753
No 93
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=30.00 E-value=95 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=16.2
Q ss_pred CCCCCCCeEEEEeCCcEEEEE
Q 031640 64 SGFHKHDVKVEIEDGRVLCIS 84 (156)
Q Consensus 64 PG~~~edi~V~v~~~~~L~I~ 84 (156)
-|+++++++|.+-+| .+.++
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~ 37 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELR 37 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEE
Confidence 478899999999877 67766
No 94
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=29.75 E-value=51 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.8
Q ss_pred eEEEEeCCEEEEEEec
Q 031640 123 ITAHIANSTLTVTVPK 138 (156)
Q Consensus 123 i~A~~~~GvL~I~~pK 138 (156)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6788899999999974
No 95
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=29.48 E-value=49 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.7
Q ss_pred eEEEEeCCEEEEEEec
Q 031640 123 ITAHIANSTLTVTVPK 138 (156)
Q Consensus 123 i~A~~~~GvL~I~~pK 138 (156)
+.+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 6788899999999973
No 96
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=29.45 E-value=64 Score=20.55 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=24.4
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEE
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDGRVL 81 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L 81 (156)
.|.+..+.|.|++.+=|+....|.+.-.+|..+
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i 46 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKI 46 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEE
Confidence 567788899999999999988999988877333
No 97
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=29.32 E-value=82 Score=19.42 Aligned_cols=30 Identities=13% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCeEEEEEEeCCCCCCCe-EEEEeCCcEEEE
Q 031640 54 PECHVFKADLSGFHKHDV-KVEIEDGRVLCI 83 (156)
Q Consensus 54 ~~~y~i~~~lPG~~~edi-~V~v~~~~~L~I 83 (156)
.+.|.|.+..+|+..... .|.+..++...+
T Consensus 47 ~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 47 PGTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp SEEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred CEeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 378999999999988887 477775544444
No 98
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=29.17 E-value=76 Score=22.83 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=22.5
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEeccc
Q 031640 64 SGFHKHDVKVEIEDGRVLCISGEKKIEK 91 (156)
Q Consensus 64 PG~~~edi~V~v~~~~~L~I~g~~~~~~ 91 (156)
.|+...++.|.+++| .++++|......
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~~ 64 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQE 64 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCHH
Confidence 578888899999986 999999987643
No 99
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=28.81 E-value=59 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.4
Q ss_pred CceEEEEeCCEEEEEEe
Q 031640 121 DRITAHIANSTLTVTVP 137 (156)
Q Consensus 121 ~~i~A~~~~GvL~I~~p 137 (156)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999997
No 100
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=28.67 E-value=27 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=17.3
Q ss_pred CCCcccCceEEEEeCCEEEEEEe
Q 031640 115 PENAMVDRITAHIANSTLTVTVP 137 (156)
Q Consensus 115 P~~vd~~~i~A~~~~GvL~I~~p 137 (156)
-+.+..+.--+.|.||||+|.++
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HhhcCccccccccccceEEEEec
Confidence 34444456668899999999986
No 101
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=28.22 E-value=3e+02 Score=21.70 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=33.9
Q ss_pred EEeCCCCCCCeE-EEEeC-CcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCcccCceEEEEeCCEEEEE
Q 031640 61 ADLSGFHKHDVK-VEIED-GRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVT 135 (156)
Q Consensus 61 ~~lPG~~~edi~-V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~ 135 (156)
-.|||+..+ ++ |++.. .+.|.... ++...++.-. ..|..-|+++|...-|++.|.. +.||.+.|+
T Consensus 15 ~~l~g~~~e-~SGLTy~pd~~tLfaV~-------d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 15 KPLPGILDE-LSGLTYNPDTGTLFAVQ-------DEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp EE-TT--S--EEEEEEETTTTEEEEEE-------TTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE--STTEEEEE
T ss_pred eECCCccCC-ccccEEcCCCCeEEEEE-------CCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-ECCCEEEEE
Confidence 479999886 44 66652 24544431 2222333333 2578899999988788888866 577766664
No 102
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.17 E-value=1.6e+02 Score=19.87 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=26.6
Q ss_pred ceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEE
Q 031640 48 IDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISG 85 (156)
Q Consensus 48 ~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g 85 (156)
+++.+++| .|....||. +.|.+..+++ .|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgi--s~ieik~E~k-kL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGI--SRIEIKPENK-KLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCc--eEEEEecccc-eEEEec
Confidence 67888888 667789999 5688888884 898987
No 103
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=28.01 E-value=1.7e+02 Score=22.80 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=26.5
Q ss_pred EEEeCCcEEEEEEEEeccccc-CC-----ccEE-EEeeeeeeEEEEEECCCC
Q 031640 73 VEIEDGRVLCISGEKKIEKEE-RT-----DEGH-RLEVAVGKFSRRFQLPEN 117 (156)
Q Consensus 73 V~v~~~~~L~I~g~~~~~~~~-~~-----~~~~-~~e~~~~~f~r~~~LP~~ 117 (156)
|.+++| .|+|++.+...... .. +.+. .....+|.|+-++.||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566777 89999987753210 01 1111 123456889999999864
No 104
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=27.91 E-value=1.3e+02 Score=19.90 Aligned_cols=37 Identities=3% Similarity=0.021 Sum_probs=25.4
Q ss_pred EEeCCCeEEEEEEe-CCCCCCCeEEEEeC--CcEEEEEEEEe
Q 031640 50 WHDTPECHVFKADL-SGFHKHDVKVEIED--GRVLCISGEKK 88 (156)
Q Consensus 50 i~e~~~~y~i~~~l-PG~~~edi~V~v~~--~~~L~I~g~~~ 88 (156)
|.++++++.|.+.+ |+.+++.|. .+.+ + .|.|+-.-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~-g~~~~~~-~Lki~v~Ap 40 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIV-GYNEWRK-RVEVKIKAP 40 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceec-cccCCCC-eEEEEEecC
Confidence 35678888888877 899888874 3444 4 677765433
No 105
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=27.18 E-value=2.8e+02 Score=21.02 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEecccccCC-----ccEEE---EeeeeeeEEEEEECCCC
Q 031640 64 SGFHKHDVKVEIEDGRVLCISGEKKIEKEERT-----DEGHR---LEVAVGKFSRRFQLPEN 117 (156)
Q Consensus 64 PG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~-----~~~~~---~e~~~~~f~r~~~LP~~ 117 (156)
..+.++++. +++| .|+|++.+........ +.+.. ....+|.|+-++.+|..
T Consensus 33 ~~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 33 YTYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EeCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 345667755 4576 8999988764321111 11111 13445788888888854
No 106
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=26.18 E-value=55 Score=21.50 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=20.1
Q ss_pred EeCCCCCCCeEEEEeCCcEEEEEEEE
Q 031640 62 DLSGFHKHDVKVEIEDGRVLCISGEK 87 (156)
Q Consensus 62 ~lPG~~~edi~V~v~~~~~L~I~g~~ 87 (156)
.+=-|+.+.|.+....| .|.|+|+.
T Consensus 37 ~I~~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 37 GLVVFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred ceEEECCCEEEEEcCce-EEEEEccc
Confidence 44457889999999986 99999874
No 107
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=25.87 E-value=1.9e+02 Score=18.63 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=22.9
Q ss_pred cEEEEeeeeeeEEEEEECCCCcccCc-eEEEEeCCEEE-EE
Q 031640 97 EGHRLEVAVGKFSRRFQLPENAMVDR-ITAHIANSTLT-VT 135 (156)
Q Consensus 97 ~~~~~e~~~~~f~r~~~LP~~vd~~~-i~A~~~~GvL~-I~ 135 (156)
.|.++....-=+.|.|.+|++..+.. +.-.|.+|.+. |.
T Consensus 32 ~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 32 EYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp EEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred EEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 34444333445789999999966665 88888888443 44
No 108
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=24.71 E-value=62 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=16.4
Q ss_pred CCCCCCeEEEEeCCcEEEEEEEE
Q 031640 65 GFHKHDVKVEIEDGRVLCISGEK 87 (156)
Q Consensus 65 G~~~edi~V~v~~~~~L~I~g~~ 87 (156)
-|+.+.|.+....| .|.|+|+.
T Consensus 21 sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcE-EEEEEcce
Confidence 45677888888776 88888763
No 109
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.98 E-value=53 Score=22.17 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.3
Q ss_pred EEEEeCCEEEEEEec
Q 031640 124 TAHIANSTLTVTVPK 138 (156)
Q Consensus 124 ~A~~~~GvL~I~~pK 138 (156)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 577799999999853
No 110
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=23.94 E-value=2.3e+02 Score=20.45 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=24.7
Q ss_pred EEEeCCcEEEEEEEEecccccCCccEE-EEeeeeeeEEEEEECCCC
Q 031640 73 VEIEDGRVLCISGEKKIEKEERTDEGH-RLEVAVGKFSRRFQLPEN 117 (156)
Q Consensus 73 V~v~~~~~L~I~g~~~~~~~~~~~~~~-~~e~~~~~f~r~~~LP~~ 117 (156)
|.+.+|+.|.|++.+.....-..+.+. .....+|.|+-++.+|..
T Consensus 14 v~~~~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~ 59 (185)
T PF00722_consen 14 VTVEDGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG 59 (185)
T ss_dssp EEEETTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS
T ss_pred EEEcCCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC
Confidence 445553477777776542221122222 223567889888887643
No 111
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=23.51 E-value=55 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=21.3
Q ss_pred ECCCCcccCceE---EEE--eCCEEEEEEeccCCC
Q 031640 113 QLPENAMVDRIT---AHI--ANSTLTVTVPKKDIK 142 (156)
Q Consensus 113 ~LP~~vd~~~i~---A~~--~~GvL~I~~pK~~~~ 142 (156)
.+-.++|.++++ -.. +++.|+|++|..+-.
T Consensus 47 ~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i~ 81 (157)
T PF14014_consen 47 TVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEIL 81 (157)
T ss_pred EEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEEe
Confidence 344456777777 556 888999999986543
No 112
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=22.48 E-value=1.9e+02 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=12.9
Q ss_pred CCCeEEEEe-CCcEEEEEEEEec
Q 031640 68 KHDVKVEIE-DGRVLCISGEKKI 89 (156)
Q Consensus 68 ~edi~V~v~-~~~~L~I~g~~~~ 89 (156)
++++. ++ +| .|+|++++..
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~~ 64 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRDG 64 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEecC
Confidence 45544 45 66 8999988763
No 113
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.84 E-value=3.2e+02 Score=20.04 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=26.4
Q ss_pred CCCCeEEEEeC-CcEEEEEEEEecc-cccCCccEE--EEeeeeeeEEEEEECCCC
Q 031640 67 HKHDVKVEIED-GRVLCISGEKKIE-KEERTDEGH--RLEVAVGKFSRRFQLPEN 117 (156)
Q Consensus 67 ~~edi~V~v~~-~~~L~I~g~~~~~-~~~~~~~~~--~~e~~~~~f~r~~~LP~~ 117 (156)
.++++ .+++ | .|.|++.+... ..-..+.+. .....+|.|+-++.+|..
T Consensus 28 ~~~nv--~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNV--YVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCE--EEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 45554 3444 5 78888776542 001111121 224556889999999865
No 114
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=21.42 E-value=2.8e+02 Score=20.55 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=17.3
Q ss_pred ECCCCcccCceE-EEEeCCEEEEEEecc
Q 031640 113 QLPENAMVDRIT-AHIANSTLTVTVPKK 139 (156)
Q Consensus 113 ~LP~~vd~~~i~-A~~~~GvL~I~~pK~ 139 (156)
.=|+.|.+.... +...+|.|++++|+.
T Consensus 161 ~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 161 EDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 445555555433 445778999999863
No 115
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=20.77 E-value=2.3e+02 Score=17.69 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=21.4
Q ss_pred eEEeCCCeEEEEEEeCCCCCCCeEEEEeCC
Q 031640 49 DWHDTPECHVFKADLSGFHKHDVKVEIEDG 78 (156)
Q Consensus 49 di~e~~~~y~i~~~lPG~~~edi~V~v~~~ 78 (156)
.+.-..+.|.|.+..+|+....+.|....+
T Consensus 38 ~i~~~~g~~~l~is~~Gy~~~~~~i~~~~~ 67 (88)
T PF13715_consen 38 SIKLPEGDYTLKISYIGYETKTITISVNSN 67 (88)
T ss_pred EEEEcCCCeEEEEEEeCEEEEEEEEEecCC
Confidence 333445668888888888888888887653
No 116
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=56 Score=28.09 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCccceEEeCCCeEEEEEEeCCCCCCCeEEEEeCCcEEEEEEEEecccccCCccEEEEeeeeeeEEEEEECCCCc-ccCc
Q 031640 44 IPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENA-MVDR 122 (156)
Q Consensus 44 ~~p~~di~e~~~~y~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v-d~~~ 122 (156)
-.|.+.+...++...|.+..|-.+-.++.+..-+ |....++ +.+.-...+|-.+ +-..
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~~--------------------~pyflrl~~p~~~~~d~~ 60 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFSA--------------------GPYFLRLAGPGMVEDDAR 60 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhcc--------------------chhHHhhcCcchhhhhcc
Confidence 3577888899999999999997777777776665 4554442 2233344455442 2223
Q ss_pred eEEEE--eCCEEEEEEeccCCC
Q 031640 123 ITAHI--ANSTLTVTVPKKDIK 142 (156)
Q Consensus 123 i~A~~--~~GvL~I~~pK~~~~ 142 (156)
-.|+| ++|..-|.+||..+.
T Consensus 61 ~n~s~d~kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 61 PNASYDAKDGYAHVKVPKFHPG 82 (466)
T ss_pred ccCccccccceeEEeecCCCcc
Confidence 44444 678888888885543
Done!