RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 031640
         (156 letters)



>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
           alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
           b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
          Length = 151

 Score =  136 bits (345), Expect = 3e-42
 Identities = 58/117 (49%), Positives = 80/117 (68%), Gaps = 2/117 (1%)

Query: 39  SPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEG 98
                   R+DW +TPE HVFKADL G  K +VKVE+EDG VL +SGE+  EKE++ D+ 
Sbjct: 37  ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKW 96

Query: 99  HRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDIKKHHGHSRSIKITG 155
           HR+E + GKF RRF+L E+A V+ + A + N  LTVTVPK ++KK     ++I+I+G
Sbjct: 97  HRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP--EVKAIQISG 151


>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
           resolution, stress response, chaperone; 1.64A
           {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
          Length = 100

 Score =  117 bits (297), Expect = 1e-35
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 37  QFSPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTD 96
           Q+ P      R+D  +     V  ADL G     ++V+++ G +L I GE+K E    T+
Sbjct: 2   QWVP------RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETE 54

Query: 97  EGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVPKK 139
              R+E   G F RRF LP++A  D ITA   N  L + +PK+
Sbjct: 55  RFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97


>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
           chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
          Length = 123

 Score =  109 bits (274), Expect = 7e-32
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 43  MIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLE 102
           ++   +D ++     V  ADL+GF+K  +K  +     L I  E++I +         L 
Sbjct: 22  LVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGV----KYLT 77

Query: 103 VAVGKFSRRFQLPENAMVD-RITAHIANSTLTVTVPKKDIKK 143
                  +  +LP N   D  I+    N  LT+ +P      
Sbjct: 78  QRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSV 119


>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
           {Methanocaldococcus jannaschii} PDB: 1shs_A
          Length = 161

 Score =  108 bits (272), Expect = 4e-31
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 9/154 (5%)

Query: 1   MSQISRSRFAGAVGYHHPPFPLSDDTWNGGQFQHVYQFSPPMMIPTRIDWHDTPECHVFK 60
             +   +   G                +      +       M    I   +  +     
Sbjct: 15  FKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFM---PISIIEGDQHIKVI 71

Query: 61  ADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEV-AVGKFSRRFQLPENAM 119
           A L G +K D+ +       L I  ++       ++     E+    +  R  +LP    
Sbjct: 72  AWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVK 130

Query: 120 VDRITAHIANSTLTVTVPKKDIKKHHGHSRSIKI 153
            +  +A   N  L+V +PK +        + I I
Sbjct: 131 EENASAKFENGVLSVILPKAESSI----KKGINI 160


>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
           intermolecular INTE chaperone, SHSP, human, small
           heat-shock protein, cataract; NMR {Homo sapiens} PDB:
           2ygd_A
          Length = 175

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 20  FPLSDDTWNGGQFQHVYQFSPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGR 79
           FP S            +  +P        +     +      D+  F   ++KV++    
Sbjct: 38  FPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV 97

Query: 80  VLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI-ANSTLTVTVPK 138
            + + G    + EER DE   +     +F R++++P +     IT+ + ++  LTV  P+
Sbjct: 98  -IEVHG----KHEERQDEHGFIS---REFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149

Query: 139 KDIKKHHGHSRSIKIT 154
           K +       R+I IT
Sbjct: 150 KQVSGPE---RTIPIT 162


>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
           charcot-marie-tooth DISE neuronopathy, IG-like fold,
           stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
          Length = 85

 Score = 65.1 bits (159), Expect = 6e-15
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 52  DTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRR 111
            T +      D++ F   ++ V+ +DG  + I+G    +   R DE   +      F+R+
Sbjct: 4   HTADRWRVSLDVNHFAPDELTVKTKDGV-VEITG----KHAARQDEHGYIS---RCFTRK 55

Query: 112 FQLPENAMVDRITAHI-ANSTLTVTVPKK 139
           + LP      ++++ +    TLTV  P  
Sbjct: 56  YTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84


>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
           response; 1.12A {Rattus norvegicus}
          Length = 101

 Score = 63.3 bits (154), Expect = 4e-14
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 52  DTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRR 111
             P       D+  F   ++ V++     + +        EER DE   +     +F RR
Sbjct: 8   TDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHA----RHEERPDEHGFIA---REFHRR 59

Query: 112 FQLPENAMVDRITAHI-ANSTLTVTVPKKDIKK 143
           ++LP       +T+ +     L++       + 
Sbjct: 60  YRLPPGVDPAAVTSALSPEGVLSIQATPASAQA 92


>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
           stress protein, eye LEN protein, cataract; HET: MSE;
           2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
          Length = 90

 Score = 62.8 bits (153), Expect = 5e-14
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 58  VFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPEN 117
               D+  F   ++KV++    V+ + G    + EER DE   +     +F R++++P +
Sbjct: 9   SVNLDVKHFSPEELKVKVLG-DVIEVHG----KHEERQDEHGFIS---REFHRKYRIPAD 60

Query: 118 AMVDRITAHI-ANSTLTVTVPKKDIKK 143
                IT+ + ++  LTV  P+K +  
Sbjct: 61  VDPLTITSSMSSDGVLTVNGPRKQVSG 87


>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
           protein aggregation, CRYS eye lens protein, chaperone;
           1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
          Length = 106

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 52  DTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRR 111
              +  V   D+  F   D+ V++++  V  I G    +  ER D+   +     +F RR
Sbjct: 9   SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHG----KHNERQDDHGYIS---REFHRR 60

Query: 112 FQLPENAMVDRITAHI-ANSTLTVTVPKKDIKKHHGHS-RSIKIT 154
           ++LP N     ++  + A+  LT + PK       GHS R+I ++
Sbjct: 61  YRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105


>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
           2.5A {Taenia saginata}
          Length = 314

 Score = 63.7 bits (154), Expect = 6e-13
 Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 4   ISRSRFAGAVGYHHPPFPLSDDTWNGGQFQHVYQFSPPMMIPTRIDWHDTPECHVFKADL 63
           I                            +          +        + + H+     
Sbjct: 183 IEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVD 242

Query: 64  SGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRI 123
             F   DVKV  +  +V  + G     KEE+T+          +F + F  PE     + 
Sbjct: 243 PHFAPKDVKVWAKGNKV-YVHGVTG--KEEKTENASH--SEHREFYKAFVTPEVVDASKT 297

Query: 124 TAHIANSTLTVTVPK 138
            A I +  + V  P 
Sbjct: 298 QAEIVDGLMVVEAPL 312



 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 14/122 (11%)

Query: 31  QFQHVYQFSPPMMIPTRIDWHDTPE----CHVFKADLSGFHKHDVKVEIEDGRVLCISGE 86
           +F    +++ P  +    D ++  +          ++  F   ++ ++ +    L +  +
Sbjct: 84  EFHPELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQ 142

Query: 87  KKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHI-ANSTLTVTVPKKDIKKHH 145
           K +   +                R   LP +   + I A I  +  L +  P  +     
Sbjct: 143 KSVACGDAAMSES--------VGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKA 194

Query: 146 GH 147
             
Sbjct: 195 IK 196


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.021
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 39/140 (27%)

Query: 19  PFPLSDDTWNGGQFQHVYQFSPPMMIPTRIDWH-----DTPECHVFKADLS----GFHKH 69
           P  LS      G  +HV      +++PT   +      +      F   L     GF   
Sbjct: 8   PLTLSH-----GSLEHV------LLVPTASFFIASQLQEQ-----FNKILPEPTEGFAAD 51

Query: 70  D---VKVEIEDGRVLC-ISGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITA 125
           D      E+  G+ L  +S    +E  +       L + + +F   + L  N   D I  
Sbjct: 52  DEPTTPAELV-GKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCY-LEGN---D-I-- 101

Query: 126 HIANSTLTVTVPKKDIKKHH 145
           H   + L        +K   
Sbjct: 102 HALAAKLLQENDTTLVKTKE 121



 Score = 25.8 bits (56), Expect = 8.4
 Identities = 6/61 (9%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 73   VEI----EDGRVLCISGEKK-IEK-EERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAH 126
            VEI     + +    +G+ + ++      +     ++ + +      L ++  ++ +  H
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE------LQKSLSLEEVEGH 1894

Query: 127  I 127
            +
Sbjct: 1895 L 1895


>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
           {Staphylococcus aureus subsp} SCOP: e.60.1.1
          Length = 418

 Score = 31.7 bits (71), Expect = 0.071
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 63  LSGFHKHDVKVEIEDGRV---LCISGEKKIEKEERTDEGHRL--EVAVG----KFSRRFQ 113
            +G      K+  +DG +       GE  ++    TDEG R   EVA+       S R  
Sbjct: 278 YNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNT 337

Query: 114 LPENAMVDR-ITAHIA 128
           +  N + D     H+A
Sbjct: 338 IFYNTLFDENAACHLA 353


>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus
           thermophilus} SCOP: e.60.1.1
          Length = 408

 Score = 30.5 bits (68), Expect = 0.22
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 63  LSGFHKHDVKVEIEDGRV---LCISGEKKIEKEERTDEGHRL--EVAVG 106
           L G     +    E G         GE+ + +   TDEG R   EVA+ 
Sbjct: 272 LGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALV 320


>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
          strands, similar to P23, lacking LAST beta strand SEEN
          in P23, protein degradation; NMR {Homo sapiens} SCOP:
          b.15.1.3
          Length = 114

 Score = 27.6 bits (61), Expect = 0.86
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 47 RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRV 80
          + DW+ T    V    +    K+DV VE  +  +
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44


>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
          chaperone-protein binding complex, stress response;
          HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
          Length = 92

 Score = 27.1 bits (60), Expect = 1.2
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 47 RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRV 80
          R +++  PE  V      G  K +V ++  +  +
Sbjct: 4  RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37


>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
           joint center F structural genomics, JCSG; HET: PG4;
           2.07A {Bacteroides fragilis nctc 9343}
          Length = 221

 Score = 27.6 bits (61), Expect = 1.5
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 82  CISGEKKIEKEERT-DEGHRLEVAVG-----------KFSRRFQLPENAMVDRITAHIAN 129
            I   KK+   +    E ++++               K   +   P+N +V  I   + +
Sbjct: 4   GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDN-IVALIQVAVKD 62

Query: 130 STLTVTVPKKDIKKHHGHSRSIKIT 154
           +TL +++  K  K  +     I IT
Sbjct: 63  NTLFLSI-DKSKKVRNFKKMKITIT 86


>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
           2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
           NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
          Length = 368

 Score = 27.7 bits (62), Expect = 1.6
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 17/59 (28%)

Query: 98  GHRLE------------VAVG-----KFSRRFQLPENAMVDRITAHIANSTLTVTVPKK 139
           GH +E            +AVG     K + R  L     V      +        +P K
Sbjct: 249 GHAIELAEQGGITHGEAIAVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLK 307


>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
           biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
           lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
          Length = 343

 Score = 27.6 bits (62), Expect = 1.6
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 18/64 (28%)

Query: 98  GHRLE-------------VAVG-----KFSRRFQLPENAMVDRITAHIANSTLTVTVPKK 139
           GH +E             +A+G       +    +      +RI   +    L       
Sbjct: 234 GHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKIL 293

Query: 140 DIKK 143
           D++K
Sbjct: 294 DLQK 297


>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex,
           pteridine tetrahydrobiopterin, structural genomics,
           NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP:
           d.96.1.1 PDB: 1wm9_A* 1wuq_A*
          Length = 220

 Score = 26.5 bits (59), Expect = 4.0
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 105 VGKFSRRFQLPENAMVDRITAHIANSTLTVTVPK 138
           V  F+RR Q+ E     R+   IA +   V  P+
Sbjct: 139 VDMFARRLQVQE-----RLAVQIAEAIQEVLEPQ 167


>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
           acid biosynthesis, DHQS, O form J, domain movement,
           cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
           SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
           1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
          Length = 393

 Score = 26.5 bits (59), Expect = 4.2
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 17/63 (26%)

Query: 98  GHRLE------------VAVG-----KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140
           GH +E            VA+G     + +R   + +   V RI   +A   L  ++    
Sbjct: 274 GHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDAR 333

Query: 141 IKK 143
           I+K
Sbjct: 334 IRK 336


>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
           tuberculosis, nicotinamide adenine dinucleotide
           (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
           PDB: 3qbd_A
          Length = 368

 Score = 26.1 bits (58), Expect = 6.1
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 17/61 (27%)

Query: 98  GHRLE------------VAVG-----KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140
           GH +E            V+VG     + +R     ++A   R    +++  L V+     
Sbjct: 258 GHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPDA 317

Query: 141 I 141
           +
Sbjct: 318 L 318


>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
           factor, RNA polymerase recycling, activator,
           ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
          Length = 968

 Score = 25.8 bits (56), Expect = 8.4
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 96  DEGHRLEVAVGKFSRRFQL 114
           DE H L  +    SR +Q 
Sbjct: 280 DEAHHLVWSEDAPSREYQA 298


>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
           serine/threonine-protein kinase, ATP-binding, I
           membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
           3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
           1bak_A
          Length = 695

 Score = 25.6 bits (56), Expect = 8.6
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 29  GGQFQHVYQFSPPMMIPTRIDWHDTPECH---VFKADLSGFHKHDVK------VEIEDGR 79
           G  F   +Q     + P R++W    E     +   ++    +  +K      ++I  G+
Sbjct: 569 GNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKERKCLLLKIRGGK 628

Query: 80  VLCISGEKKIEKEE 93
              +  +   E  +
Sbjct: 629 QFVLQCDSDPELVQ 642


>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain
           dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens}
           SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
          Length = 493

 Score = 25.3 bits (56), Expect = 9.7
 Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 13/39 (33%)

Query: 98  GHRLEVAVGKFSRRFQLPE------------NAMVDRIT 124
           G     A+  F+      E            NAMVDRIT
Sbjct: 196 GAVTRKALLAFAALHN-AELHDWIKAHVSFPNAMVDRIT 233


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,615,099
Number of extensions: 151390
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 27
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)